Multiple sequence alignment - TraesCS4D01G052100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G052100 chr4D 100.000 8204 0 0 1 8204 28450060 28441857 0.000000e+00 15151.0
1 TraesCS4D01G052100 chr4D 86.170 94 12 1 7891 7984 477366282 477366374 5.240000e-17 100.0
2 TraesCS4D01G052100 chr4D 100.000 49 0 0 8156 8204 477366931 477366979 3.150000e-14 91.6
3 TraesCS4D01G052100 chr4D 100.000 47 0 0 8158 8204 509223396 509223350 4.080000e-13 87.9
4 TraesCS4D01G052100 chr4A 95.565 5051 144 23 564 5577 575423345 575428352 0.000000e+00 8013.0
5 TraesCS4D01G052100 chr4A 94.914 2261 76 15 5573 7810 575428472 575430716 0.000000e+00 3502.0
6 TraesCS4D01G052100 chr4A 81.423 253 25 11 6 241 575422449 575422696 3.910000e-43 187.0
7 TraesCS4D01G052100 chr4A 81.081 222 22 14 245 451 575422737 575422953 8.520000e-35 159.0
8 TraesCS4D01G052100 chr4B 97.754 2850 46 8 2745 5577 40751374 40748526 0.000000e+00 4892.0
9 TraesCS4D01G052100 chr4B 94.534 2360 77 17 5576 7892 40748403 40746053 0.000000e+00 3596.0
10 TraesCS4D01G052100 chr4B 92.427 2324 94 35 380 2685 40753667 40751408 0.000000e+00 3241.0
11 TraesCS4D01G052100 chr4B 96.296 135 5 0 1349 1483 40753666 40753800 1.070000e-53 222.0
12 TraesCS4D01G052100 chr4B 82.041 245 11 13 1 241 40754108 40753893 2.350000e-40 178.0
13 TraesCS4D01G052100 chr4B 92.405 79 3 1 7649 7724 40644186 40644108 8.710000e-20 110.0
14 TraesCS4D01G052100 chr5D 94.006 317 15 4 7890 8204 469797265 469797579 2.070000e-130 477.0
15 TraesCS4D01G052100 chr3A 92.254 284 21 1 7922 8204 120839782 120840065 1.280000e-107 401.0
16 TraesCS4D01G052100 chr7A 92.199 282 21 1 7922 8202 38528880 38529161 1.660000e-106 398.0
17 TraesCS4D01G052100 chr6D 93.827 243 15 0 7951 8193 431213006 431213248 4.680000e-97 366.0
18 TraesCS4D01G052100 chr3D 87.179 195 23 2 8009 8202 8539853 8540046 3.850000e-53 220.0
19 TraesCS4D01G052100 chr2B 96.850 127 4 0 8078 8204 707252930 707253056 6.450000e-51 213.0
20 TraesCS4D01G052100 chr1D 85.106 141 21 0 8064 8204 407221492 407221632 2.390000e-30 145.0
21 TraesCS4D01G052100 chr7D 81.098 164 28 3 7888 8050 51711743 51711904 2.400000e-25 128.0
22 TraesCS4D01G052100 chr7D 86.139 101 13 1 7890 7990 577380298 577380199 3.130000e-19 108.0
23 TraesCS4D01G052100 chr7D 86.000 100 9 5 7887 7984 180852209 180852305 1.460000e-17 102.0
24 TraesCS4D01G052100 chr2D 85.437 103 10 5 7890 7990 552085488 552085389 1.460000e-17 102.0
25 TraesCS4D01G052100 chrUn 85.149 101 12 3 7891 7990 92584302 92584204 5.240000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G052100 chr4D 28441857 28450060 8203 True 15151.00 15151 100.00000 1 8204 1 chr4D.!!$R1 8203
1 TraesCS4D01G052100 chr4A 575422449 575430716 8267 False 2965.25 8013 88.24575 6 7810 4 chr4A.!!$F1 7804
2 TraesCS4D01G052100 chr4B 40746053 40754108 8055 True 2976.75 4892 91.68900 1 7892 4 chr4B.!!$R2 7891

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
721 1182 0.598562 TCGTGCTTCCTCACTCACTC 59.401 55.000 0.00 0.00 34.92 3.51 F
793 1255 0.720590 CTCGCTCTTCTTCTTGCTGC 59.279 55.000 0.00 0.00 0.00 5.25 F
1763 2235 0.846427 AGGCAACCTGATGAGGGGAA 60.846 55.000 2.36 0.00 44.84 3.97 F
2486 2959 1.351017 TCCACTTCGCTTCTTGGGAAT 59.649 47.619 0.00 0.00 44.75 3.01 F
3533 4034 1.003580 ACATTCAGGTGGAAGACGCAT 59.996 47.619 0.00 0.00 39.30 4.73 F
4170 4671 1.003928 AGTGATGCTGCTGACATTGGA 59.996 47.619 0.00 0.00 0.00 3.53 F
4278 4779 2.288702 GAGACACTCTCAGCAAGAAGCA 60.289 50.000 0.00 0.00 42.90 3.91 F
4401 4902 2.642154 TTTCTTTTCCACCGCCACTA 57.358 45.000 0.00 0.00 0.00 2.74 F
4572 5073 4.751767 AAGGAGCTCTCGAGATGAAATT 57.248 40.909 17.03 6.08 0.00 1.82 F
6287 7040 0.389948 CTTACCGTGCACCTGAGGTC 60.390 60.000 16.22 0.00 38.12 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1763 2235 1.120530 CCCCGAGTAATACTGCCTGT 58.879 55.000 0.00 0.00 0.00 4.00 R
2207 2680 1.392589 AGTTGCAGTTTCCTGTGGTG 58.607 50.000 0.00 0.00 41.02 4.17 R
3533 4034 3.560453 GGATAACCAACTACTGCCAACCA 60.560 47.826 0.00 0.00 35.97 3.67 R
4170 4671 1.139058 AGACTTTCACGCACCTCACTT 59.861 47.619 0.00 0.00 0.00 3.16 R
4825 5326 4.670765 AGCAATCAAGGAATCAAGGACTT 58.329 39.130 0.00 0.00 0.00 3.01 R
5326 5827 6.980577 TCCATGGGAACTAAATAAGACCAAT 58.019 36.000 13.02 0.00 33.23 3.16 R
5564 6067 7.572523 TTAGATCATTTGGCCAAGATAACTG 57.427 36.000 19.48 10.43 0.00 3.16 R
6287 7040 3.646162 TGTCATAAGGTAGGCCCAGTATG 59.354 47.826 0.00 1.04 35.93 2.39 R
6520 7275 7.912250 ACATTAAAGAAATATGCGCTGAAAGAG 59.088 33.333 9.73 0.00 34.07 2.85 R
7331 8088 0.034756 GTTTGTTTCCATGGGTGGCC 59.965 55.000 13.02 0.00 45.63 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.188460 GGCGCACATTCTTCTTCACTTTA 59.812 43.478 10.83 0.00 0.00 1.85
24 25 4.151798 GCGCACATTCTTCTTCACTTTAC 58.848 43.478 0.30 0.00 0.00 2.01
26 27 5.140177 CGCACATTCTTCTTCACTTTACAC 58.860 41.667 0.00 0.00 0.00 2.90
27 28 5.277297 CGCACATTCTTCTTCACTTTACACA 60.277 40.000 0.00 0.00 0.00 3.72
31 38 7.959651 CACATTCTTCTTCACTTTACACATAGC 59.040 37.037 0.00 0.00 0.00 2.97
35 42 3.512329 TCTTCACTTTACACATAGCCGGA 59.488 43.478 5.05 0.00 0.00 5.14
38 45 4.839121 TCACTTTACACATAGCCGGAAAT 58.161 39.130 5.05 0.00 0.00 2.17
60 67 2.325509 AAAGCCGCACATTTCGTAAC 57.674 45.000 0.00 0.00 0.00 2.50
67 74 4.613944 CCGCACATTTCGTAACCTCTATA 58.386 43.478 0.00 0.00 0.00 1.31
77 84 8.894768 TTTCGTAACCTCTATACTACTAGTCC 57.105 38.462 0.00 0.00 0.00 3.85
78 85 7.603180 TCGTAACCTCTATACTACTAGTCCA 57.397 40.000 0.00 0.00 0.00 4.02
79 86 7.665690 TCGTAACCTCTATACTACTAGTCCAG 58.334 42.308 0.00 0.00 0.00 3.86
82 89 7.695074 AACCTCTATACTACTAGTCCAGAGT 57.305 40.000 17.71 0.00 35.85 3.24
83 90 7.307131 ACCTCTATACTACTAGTCCAGAGTC 57.693 44.000 17.71 0.00 35.85 3.36
84 91 6.270695 ACCTCTATACTACTAGTCCAGAGTCC 59.729 46.154 17.71 0.00 35.85 3.85
85 92 6.270463 CCTCTATACTACTAGTCCAGAGTCCA 59.730 46.154 17.71 0.00 35.85 4.02
86 93 7.305813 TCTATACTACTAGTCCAGAGTCCAG 57.694 44.000 0.00 0.00 0.00 3.86
89 96 3.847780 ACTACTAGTCCAGAGTCCAGAGT 59.152 47.826 0.00 0.00 0.00 3.24
90 97 5.031495 ACTACTAGTCCAGAGTCCAGAGTA 58.969 45.833 0.00 0.00 0.00 2.59
91 98 5.668535 ACTACTAGTCCAGAGTCCAGAGTAT 59.331 44.000 0.00 0.00 0.00 2.12
92 99 5.043737 ACTAGTCCAGAGTCCAGAGTATC 57.956 47.826 0.00 0.00 0.00 2.24
123 133 2.677542 TACAGCGAGATACCTGGGAT 57.322 50.000 0.00 0.00 33.43 3.85
124 134 2.677542 ACAGCGAGATACCTGGGATA 57.322 50.000 0.00 0.00 33.43 2.59
249 302 1.378514 GCCCAATCGCCCAAGAGAA 60.379 57.895 0.00 0.00 0.00 2.87
251 304 1.544724 CCCAATCGCCCAAGAGAAAA 58.455 50.000 0.00 0.00 0.00 2.29
252 305 1.474077 CCCAATCGCCCAAGAGAAAAG 59.526 52.381 0.00 0.00 0.00 2.27
253 306 1.474077 CCAATCGCCCAAGAGAAAAGG 59.526 52.381 0.00 0.00 0.00 3.11
264 317 6.014584 GCCCAAGAGAAAAGGAAAAGGATTTA 60.015 38.462 0.00 0.00 37.28 1.40
300 354 2.565841 CACAAATCCCTCCTCGATTCC 58.434 52.381 0.00 0.00 0.00 3.01
301 355 1.490910 ACAAATCCCTCCTCGATTCCC 59.509 52.381 0.00 0.00 0.00 3.97
302 356 1.141185 AAATCCCTCCTCGATTCCCC 58.859 55.000 0.00 0.00 0.00 4.81
303 357 1.122019 AATCCCTCCTCGATTCCCCG 61.122 60.000 0.00 0.00 0.00 5.73
304 358 2.313749 ATCCCTCCTCGATTCCCCGT 62.314 60.000 0.00 0.00 0.00 5.28
305 359 2.064581 CCCTCCTCGATTCCCCGTT 61.065 63.158 0.00 0.00 0.00 4.44
308 362 2.029307 CTCCTCGATTCCCCGTTCCC 62.029 65.000 0.00 0.00 0.00 3.97
310 364 2.284773 TCGATTCCCCGTTCCCCA 60.285 61.111 0.00 0.00 0.00 4.96
311 365 1.691337 TCGATTCCCCGTTCCCCAT 60.691 57.895 0.00 0.00 0.00 4.00
314 368 1.691337 ATTCCCCGTTCCCCATCGA 60.691 57.895 0.00 0.00 0.00 3.59
315 369 1.060163 ATTCCCCGTTCCCCATCGAT 61.060 55.000 0.00 0.00 0.00 3.59
316 370 1.276140 TTCCCCGTTCCCCATCGATT 61.276 55.000 0.00 0.00 0.00 3.34
317 371 1.227853 CCCCGTTCCCCATCGATTC 60.228 63.158 0.00 0.00 0.00 2.52
318 372 1.594293 CCCGTTCCCCATCGATTCG 60.594 63.158 0.00 0.00 0.00 3.34
319 373 1.440060 CCGTTCCCCATCGATTCGA 59.560 57.895 11.73 11.73 41.13 3.71
321 375 1.540363 CCGTTCCCCATCGATTCGATT 60.540 52.381 18.52 2.33 44.59 3.34
379 450 1.601477 GGAACGGGCCGAGGAAAAA 60.601 57.895 35.78 0.00 0.00 1.94
470 642 2.199535 CCCCCTGATCCCCAATGC 59.800 66.667 0.00 0.00 0.00 3.56
718 1179 1.066858 GGATTCGTGCTTCCTCACTCA 60.067 52.381 0.00 0.00 34.92 3.41
721 1182 0.598562 TCGTGCTTCCTCACTCACTC 59.401 55.000 0.00 0.00 34.92 3.51
730 1191 1.643868 CTCACTCACTCGCTCGCTCT 61.644 60.000 0.00 0.00 0.00 4.09
793 1255 0.720590 CTCGCTCTTCTTCTTGCTGC 59.279 55.000 0.00 0.00 0.00 5.25
967 1439 2.830370 CCTCCCGCCAAGCATTCC 60.830 66.667 0.00 0.00 0.00 3.01
1106 1578 2.978010 CACCACCAACGGGCAGAC 60.978 66.667 0.00 0.00 37.90 3.51
1110 1582 4.329545 ACCAACGGGCAGACGCAT 62.330 61.111 0.00 0.00 41.24 4.73
1111 1583 2.125310 CCAACGGGCAGACGCATA 60.125 61.111 0.00 0.00 41.24 3.14
1112 1584 2.173669 CCAACGGGCAGACGCATAG 61.174 63.158 0.00 0.00 41.24 2.23
1114 1586 4.530857 ACGGGCAGACGCATAGGC 62.531 66.667 0.00 0.00 41.24 3.93
1155 1627 2.754658 GAGGAGGACGAGCGGGAA 60.755 66.667 0.00 0.00 0.00 3.97
1319 1791 1.376553 GCCTGCCTCTGGAGAACAC 60.377 63.158 0.00 0.00 0.00 3.32
1458 1930 4.585216 AGGGACCGGGGTGTTGGA 62.585 66.667 6.32 0.00 0.00 3.53
1472 1944 2.818169 TTGGAACCGAGCAGCCTGT 61.818 57.895 0.00 0.00 0.00 4.00
1515 1987 0.960861 CGTTTGGAAGAGGGAAGGGC 60.961 60.000 0.00 0.00 0.00 5.19
1671 2143 5.931146 CCCGTCGTCTAGTTATCATAGTACT 59.069 44.000 0.00 0.00 0.00 2.73
1749 2221 1.069049 GGAAAAGCAGCAAAGAGGCAA 59.931 47.619 0.00 0.00 35.83 4.52
1763 2235 0.846427 AGGCAACCTGATGAGGGGAA 60.846 55.000 2.36 0.00 44.84 3.97
1779 2251 2.483188 GGGGAACAGGCAGTATTACTCG 60.483 54.545 0.00 0.00 0.00 4.18
2101 2574 6.539649 TTTAGTTACAACAGTAGCTGCAAG 57.460 37.500 4.12 0.00 34.37 4.01
2207 2680 1.536284 GCGACTGTGTAGCTCATACCC 60.536 57.143 0.00 0.00 33.01 3.69
2445 2918 9.233232 CTACTTGAATGGTTTTGTTTACAGTTC 57.767 33.333 0.00 0.00 0.00 3.01
2486 2959 1.351017 TCCACTTCGCTTCTTGGGAAT 59.649 47.619 0.00 0.00 44.75 3.01
2673 3146 2.906389 TCTTGGTTCTGTAGGACAGCAT 59.094 45.455 1.60 0.00 45.54 3.79
3166 3653 7.468922 GTTTTCTGGAAACTTTGATCTTTGG 57.531 36.000 4.28 0.00 43.44 3.28
3387 3888 6.205464 CAGTGAAATGTTTCTTGCTCTAGGAA 59.795 38.462 6.99 0.00 38.02 3.36
3484 3985 8.951243 ACTTATCTGAGTTTGGCTAATCTTTTC 58.049 33.333 0.00 0.00 0.00 2.29
3533 4034 1.003580 ACATTCAGGTGGAAGACGCAT 59.996 47.619 0.00 0.00 39.30 4.73
3834 4335 6.016360 ACGATGACCAATCATTTGTTGAAGAA 60.016 34.615 0.00 0.00 46.01 2.52
4170 4671 1.003928 AGTGATGCTGCTGACATTGGA 59.996 47.619 0.00 0.00 0.00 3.53
4276 4777 3.940209 AGAGACACTCTCAGCAAGAAG 57.060 47.619 2.20 0.00 45.73 2.85
4278 4779 2.288702 GAGACACTCTCAGCAAGAAGCA 60.289 50.000 0.00 0.00 42.90 3.91
4401 4902 2.642154 TTTCTTTTCCACCGCCACTA 57.358 45.000 0.00 0.00 0.00 2.74
4572 5073 4.751767 AAGGAGCTCTCGAGATGAAATT 57.248 40.909 17.03 6.08 0.00 1.82
4825 5326 9.756571 TGCATAGGAAAAATAGGTACCTTTTTA 57.243 29.630 24.97 13.19 35.02 1.52
5326 5827 7.778185 TTTTTAATCTTTTCCCGACCCATTA 57.222 32.000 0.00 0.00 0.00 1.90
5394 5895 7.888514 TTAGGGTTGAGATATATGTTCCCAT 57.111 36.000 15.67 4.59 36.45 4.00
5973 6726 5.801531 ACGATGCCAAGATTACAGGTATA 57.198 39.130 0.00 0.00 0.00 1.47
6287 7040 0.389948 CTTACCGTGCACCTGAGGTC 60.390 60.000 16.22 0.00 38.12 3.85
6576 7331 7.275920 ACCATAGATCTATGTTTCAGGTTCAC 58.724 38.462 31.44 0.00 40.90 3.18
6869 7624 4.510340 CACAGGGGCGTGATACTTATAAAC 59.490 45.833 0.00 0.00 39.34 2.01
6920 7675 7.707104 TGAAAGAAATCAGGTTTGAACTCTTC 58.293 34.615 0.00 0.00 37.34 2.87
6921 7676 7.557719 TGAAAGAAATCAGGTTTGAACTCTTCT 59.442 33.333 0.00 0.00 37.34 2.85
6932 7687 4.090761 TGAACTCTTCTGCCATGTTTCT 57.909 40.909 0.00 0.00 0.00 2.52
6943 7698 4.681744 TGCCATGTTTCTTTTTCACTCAC 58.318 39.130 0.00 0.00 0.00 3.51
6946 7701 3.046285 TGTTTCTTTTTCACTCACGCG 57.954 42.857 3.53 3.53 0.00 6.01
6963 7718 0.659957 GCGCACCTGATTCAGATTCC 59.340 55.000 15.36 0.27 32.44 3.01
6975 7730 7.943447 CCTGATTCAGATTCCTCCTTGAAATAT 59.057 37.037 15.36 0.00 32.44 1.28
6977 7732 9.705103 TGATTCAGATTCCTCCTTGAAATATTT 57.295 29.630 0.00 0.00 0.00 1.40
6980 7735 9.532494 TTCAGATTCCTCCTTGAAATATTTTCA 57.468 29.630 1.43 0.00 0.00 2.69
7017 7772 2.608752 GCAATTGGTTGTGCTTCAGGAG 60.609 50.000 7.72 0.00 37.78 3.69
7131 7886 2.094182 CCTTCTCGAGGTGAATCCGAAA 60.094 50.000 13.56 0.00 40.95 3.46
7286 8043 1.681780 GGCACCTAAGCAAGCACCATA 60.682 52.381 0.00 0.00 35.83 2.74
7300 8057 6.222389 CAAGCACCATAAAGTTTTGATGGAA 58.778 36.000 19.84 0.00 42.41 3.53
7302 8059 5.774690 AGCACCATAAAGTTTTGATGGAAGA 59.225 36.000 19.84 0.00 42.41 2.87
7303 8060 6.438425 AGCACCATAAAGTTTTGATGGAAGAT 59.562 34.615 19.84 10.35 42.41 2.40
7304 8061 6.753744 GCACCATAAAGTTTTGATGGAAGATC 59.246 38.462 19.84 4.78 42.41 2.75
7331 8088 4.183865 TGATGAAATCTGTTCTAGCACGG 58.816 43.478 0.00 0.00 45.81 4.94
7523 8283 5.046950 GGCCATTTGGTTAGGTACATTTTGA 60.047 40.000 0.00 0.00 37.57 2.69
7697 8477 3.491342 TGCCAGGTTTTACACATGCTAA 58.509 40.909 0.00 0.00 35.74 3.09
7724 8504 4.281657 AGTCTTAGGATTGGGCCAAAATC 58.718 43.478 24.97 17.03 34.00 2.17
7725 8505 3.066760 GTCTTAGGATTGGGCCAAAATCG 59.933 47.826 24.97 9.89 35.31 3.34
7769 8566 2.280628 GGGATTCGCAGAAAATCGAGT 58.719 47.619 0.00 0.00 45.90 4.18
7846 8643 6.209986 TGATTCTTTAGTTCTCCCGTAGTTGA 59.790 38.462 0.00 0.00 0.00 3.18
7859 8656 7.548075 TCTCCCGTAGTTGATTTTCAATCTTAC 59.452 37.037 0.00 0.00 38.79 2.34
7892 8689 2.950309 AGTTTCCATCATCTGCAGCATC 59.050 45.455 9.47 0.00 0.00 3.91
7893 8690 1.977056 TTCCATCATCTGCAGCATCC 58.023 50.000 9.47 0.00 0.00 3.51
7894 8691 0.841289 TCCATCATCTGCAGCATCCA 59.159 50.000 9.47 0.00 0.00 3.41
7895 8692 1.202770 TCCATCATCTGCAGCATCCAG 60.203 52.381 9.47 0.00 0.00 3.86
7896 8693 1.202770 CCATCATCTGCAGCATCCAGA 60.203 52.381 9.47 0.50 42.91 3.86
7898 8695 3.307480 CCATCATCTGCAGCATCCAGATA 60.307 47.826 9.47 0.00 45.60 1.98
7899 8696 4.518249 CATCATCTGCAGCATCCAGATAT 58.482 43.478 9.47 0.00 45.60 1.63
7900 8697 5.396436 CCATCATCTGCAGCATCCAGATATA 60.396 44.000 9.47 5.98 45.60 0.86
7901 8698 5.750352 TCATCTGCAGCATCCAGATATAA 57.250 39.130 9.47 0.00 45.60 0.98
7902 8699 5.731591 TCATCTGCAGCATCCAGATATAAG 58.268 41.667 9.47 3.12 45.60 1.73
7903 8700 5.247792 TCATCTGCAGCATCCAGATATAAGT 59.752 40.000 9.47 0.00 45.60 2.24
7904 8701 5.557576 TCTGCAGCATCCAGATATAAGTT 57.442 39.130 9.47 0.00 34.59 2.66
7905 8702 6.670695 TCTGCAGCATCCAGATATAAGTTA 57.329 37.500 9.47 0.00 34.59 2.24
7906 8703 6.695429 TCTGCAGCATCCAGATATAAGTTAG 58.305 40.000 9.47 0.00 34.59 2.34
7907 8704 6.268617 TCTGCAGCATCCAGATATAAGTTAGT 59.731 38.462 9.47 0.00 34.59 2.24
7908 8705 6.830912 TGCAGCATCCAGATATAAGTTAGTT 58.169 36.000 0.00 0.00 0.00 2.24
7909 8706 6.707608 TGCAGCATCCAGATATAAGTTAGTTG 59.292 38.462 0.00 0.00 0.00 3.16
7910 8707 6.148480 GCAGCATCCAGATATAAGTTAGTTGG 59.852 42.308 0.00 0.00 0.00 3.77
7911 8708 6.652481 CAGCATCCAGATATAAGTTAGTTGGG 59.348 42.308 0.00 0.00 0.00 4.12
7912 8709 6.558775 AGCATCCAGATATAAGTTAGTTGGGA 59.441 38.462 0.00 0.00 0.00 4.37
7913 8710 6.876257 GCATCCAGATATAAGTTAGTTGGGAG 59.124 42.308 0.00 0.00 0.00 4.30
7914 8711 7.256332 GCATCCAGATATAAGTTAGTTGGGAGA 60.256 40.741 0.00 0.00 0.00 3.71
7915 8712 8.651389 CATCCAGATATAAGTTAGTTGGGAGAA 58.349 37.037 0.00 0.00 0.00 2.87
7916 8713 8.019656 TCCAGATATAAGTTAGTTGGGAGAAC 57.980 38.462 0.00 0.00 0.00 3.01
7917 8714 7.622081 TCCAGATATAAGTTAGTTGGGAGAACA 59.378 37.037 0.00 0.00 0.00 3.18
7918 8715 8.432805 CCAGATATAAGTTAGTTGGGAGAACAT 58.567 37.037 0.00 0.00 0.00 2.71
7919 8716 9.265901 CAGATATAAGTTAGTTGGGAGAACATG 57.734 37.037 0.00 0.00 0.00 3.21
7920 8717 9.213777 AGATATAAGTTAGTTGGGAGAACATGA 57.786 33.333 0.00 0.00 0.00 3.07
7921 8718 9.482627 GATATAAGTTAGTTGGGAGAACATGAG 57.517 37.037 0.00 0.00 0.00 2.90
7922 8719 4.559862 AGTTAGTTGGGAGAACATGAGG 57.440 45.455 0.00 0.00 0.00 3.86
7923 8720 3.010420 GTTAGTTGGGAGAACATGAGGC 58.990 50.000 0.00 0.00 0.00 4.70
7924 8721 1.366319 AGTTGGGAGAACATGAGGCT 58.634 50.000 0.00 0.00 0.00 4.58
7925 8722 1.707427 AGTTGGGAGAACATGAGGCTT 59.293 47.619 0.00 0.00 0.00 4.35
7926 8723 2.087646 GTTGGGAGAACATGAGGCTTC 58.912 52.381 0.00 0.00 0.00 3.86
7927 8724 1.661463 TGGGAGAACATGAGGCTTCT 58.339 50.000 0.00 0.00 0.00 2.85
7928 8725 1.556911 TGGGAGAACATGAGGCTTCTC 59.443 52.381 12.98 12.98 41.15 2.87
7936 8733 3.370798 TGAGGCTTCTCAGAGCTCA 57.629 52.632 17.77 2.26 42.13 4.26
7937 8734 1.184431 TGAGGCTTCTCAGAGCTCAG 58.816 55.000 17.77 8.39 42.13 3.35
7938 8735 0.179103 GAGGCTTCTCAGAGCTCAGC 60.179 60.000 17.77 15.16 42.32 4.26
7939 8736 1.519013 GGCTTCTCAGAGCTCAGCG 60.519 63.158 17.77 2.58 42.32 5.18
7940 8737 1.510383 GCTTCTCAGAGCTCAGCGA 59.490 57.895 17.77 5.47 39.57 4.93
7941 8738 0.801836 GCTTCTCAGAGCTCAGCGAC 60.802 60.000 17.77 0.00 39.57 5.19
7942 8739 0.810648 CTTCTCAGAGCTCAGCGACT 59.189 55.000 17.77 0.00 0.00 4.18
7943 8740 0.808125 TTCTCAGAGCTCAGCGACTC 59.192 55.000 17.77 0.00 0.00 3.36
7944 8741 0.035534 TCTCAGAGCTCAGCGACTCT 60.036 55.000 17.77 0.00 44.06 3.24
7945 8742 0.378257 CTCAGAGCTCAGCGACTCTC 59.622 60.000 17.77 0.00 41.31 3.20
7946 8743 0.322008 TCAGAGCTCAGCGACTCTCA 60.322 55.000 17.77 0.00 41.31 3.27
7947 8744 0.099259 CAGAGCTCAGCGACTCTCAG 59.901 60.000 17.77 0.00 41.31 3.35
7948 8745 1.226660 GAGCTCAGCGACTCTCAGC 60.227 63.158 9.40 0.00 0.00 4.26
7949 8746 1.656818 GAGCTCAGCGACTCTCAGCT 61.657 60.000 9.40 0.00 45.74 4.24
7953 8750 4.983628 AGCGACTCTCAGCTGTTG 57.016 55.556 14.67 8.33 42.82 3.33
7954 8751 1.291588 AGCGACTCTCAGCTGTTGG 59.708 57.895 14.67 7.27 42.82 3.77
7955 8752 1.181741 AGCGACTCTCAGCTGTTGGA 61.182 55.000 14.67 9.74 42.82 3.53
7956 8753 0.108424 GCGACTCTCAGCTGTTGGAT 60.108 55.000 14.67 0.00 0.00 3.41
7957 8754 1.919918 CGACTCTCAGCTGTTGGATC 58.080 55.000 14.67 5.73 0.00 3.36
7958 8755 1.796982 CGACTCTCAGCTGTTGGATCG 60.797 57.143 14.67 13.56 0.00 3.69
7959 8756 1.203523 GACTCTCAGCTGTTGGATCGT 59.796 52.381 14.67 6.22 0.00 3.73
7960 8757 1.620819 ACTCTCAGCTGTTGGATCGTT 59.379 47.619 14.67 0.00 0.00 3.85
7961 8758 2.037772 ACTCTCAGCTGTTGGATCGTTT 59.962 45.455 14.67 0.00 0.00 3.60
7962 8759 3.070018 CTCTCAGCTGTTGGATCGTTTT 58.930 45.455 14.67 0.00 0.00 2.43
7963 8760 2.807967 TCTCAGCTGTTGGATCGTTTTG 59.192 45.455 14.67 0.00 0.00 2.44
7964 8761 1.266718 TCAGCTGTTGGATCGTTTTGC 59.733 47.619 14.67 0.00 0.00 3.68
7965 8762 1.267806 CAGCTGTTGGATCGTTTTGCT 59.732 47.619 5.25 0.00 0.00 3.91
7966 8763 1.956477 AGCTGTTGGATCGTTTTGCTT 59.044 42.857 0.00 0.00 0.00 3.91
7967 8764 2.053627 GCTGTTGGATCGTTTTGCTTG 58.946 47.619 0.00 0.00 0.00 4.01
7968 8765 2.287547 GCTGTTGGATCGTTTTGCTTGA 60.288 45.455 0.00 0.00 0.00 3.02
7969 8766 3.612479 GCTGTTGGATCGTTTTGCTTGAT 60.612 43.478 0.00 0.00 0.00 2.57
7970 8767 3.899734 TGTTGGATCGTTTTGCTTGATG 58.100 40.909 0.00 0.00 0.00 3.07
7971 8768 2.634982 TGGATCGTTTTGCTTGATGC 57.365 45.000 0.00 0.00 43.25 3.91
7972 8769 1.135717 TGGATCGTTTTGCTTGATGCG 60.136 47.619 0.00 0.00 46.63 4.73
7973 8770 1.135689 GGATCGTTTTGCTTGATGCGT 60.136 47.619 0.00 0.00 46.63 5.24
7974 8771 2.584791 GATCGTTTTGCTTGATGCGTT 58.415 42.857 0.00 0.00 46.63 4.84
7975 8772 2.483583 TCGTTTTGCTTGATGCGTTT 57.516 40.000 0.00 0.00 46.63 3.60
7976 8773 2.115595 TCGTTTTGCTTGATGCGTTTG 58.884 42.857 0.00 0.00 46.63 2.93
7977 8774 1.189884 CGTTTTGCTTGATGCGTTTGG 59.810 47.619 0.00 0.00 46.63 3.28
7978 8775 1.526464 GTTTTGCTTGATGCGTTTGGG 59.474 47.619 0.00 0.00 46.63 4.12
7979 8776 1.035923 TTTGCTTGATGCGTTTGGGA 58.964 45.000 0.00 0.00 46.63 4.37
7980 8777 0.313672 TTGCTTGATGCGTTTGGGAC 59.686 50.000 0.00 0.00 46.63 4.46
7981 8778 1.212751 GCTTGATGCGTTTGGGACC 59.787 57.895 0.00 0.00 0.00 4.46
7982 8779 1.501741 CTTGATGCGTTTGGGACCG 59.498 57.895 0.00 0.00 0.00 4.79
7983 8780 1.228003 TTGATGCGTTTGGGACCGT 60.228 52.632 0.00 0.00 0.00 4.83
7984 8781 1.231958 TTGATGCGTTTGGGACCGTC 61.232 55.000 0.00 0.00 0.00 4.79
7985 8782 1.669760 GATGCGTTTGGGACCGTCA 60.670 57.895 0.00 0.00 0.00 4.35
7986 8783 1.635663 GATGCGTTTGGGACCGTCAG 61.636 60.000 0.00 0.00 0.00 3.51
7987 8784 2.029964 GCGTTTGGGACCGTCAGA 59.970 61.111 0.00 0.00 0.00 3.27
7988 8785 1.375523 GCGTTTGGGACCGTCAGAT 60.376 57.895 0.00 0.00 0.00 2.90
7989 8786 1.359459 GCGTTTGGGACCGTCAGATC 61.359 60.000 0.00 0.00 0.00 2.75
7990 8787 1.076533 CGTTTGGGACCGTCAGATCG 61.077 60.000 0.00 0.00 0.00 3.69
7991 8788 0.245539 GTTTGGGACCGTCAGATCGA 59.754 55.000 0.00 0.00 0.00 3.59
7992 8789 0.530744 TTTGGGACCGTCAGATCGAG 59.469 55.000 0.00 0.00 0.00 4.04
7993 8790 1.945354 TTGGGACCGTCAGATCGAGC 61.945 60.000 0.00 0.00 0.00 5.03
7994 8791 2.413765 GGACCGTCAGATCGAGCC 59.586 66.667 0.00 0.00 0.00 4.70
7995 8792 2.413765 GACCGTCAGATCGAGCCC 59.586 66.667 0.00 0.00 0.00 5.19
7996 8793 2.043852 ACCGTCAGATCGAGCCCT 60.044 61.111 0.00 0.00 0.00 5.19
7997 8794 2.065906 GACCGTCAGATCGAGCCCTC 62.066 65.000 0.00 0.00 0.00 4.30
7998 8795 2.121538 CCGTCAGATCGAGCCCTCA 61.122 63.158 0.00 0.00 0.00 3.86
7999 8796 1.358402 CGTCAGATCGAGCCCTCAG 59.642 63.158 0.00 0.00 0.00 3.35
8000 8797 1.739049 GTCAGATCGAGCCCTCAGG 59.261 63.158 0.00 0.00 0.00 3.86
8022 8819 4.794648 CCCAGCCGCCGGATTGAA 62.795 66.667 7.68 0.00 0.00 2.69
8023 8820 3.508840 CCAGCCGCCGGATTGAAC 61.509 66.667 7.68 0.00 0.00 3.18
8024 8821 2.436646 CAGCCGCCGGATTGAACT 60.437 61.111 7.68 0.00 0.00 3.01
8025 8822 2.436646 AGCCGCCGGATTGAACTG 60.437 61.111 7.68 0.00 0.00 3.16
8026 8823 2.435938 GCCGCCGGATTGAACTGA 60.436 61.111 7.68 0.00 0.00 3.41
8027 8824 2.038269 GCCGCCGGATTGAACTGAA 61.038 57.895 7.68 0.00 0.00 3.02
8028 8825 1.582610 GCCGCCGGATTGAACTGAAA 61.583 55.000 7.68 0.00 0.00 2.69
8029 8826 0.878416 CCGCCGGATTGAACTGAAAA 59.122 50.000 5.05 0.00 0.00 2.29
8030 8827 1.401018 CCGCCGGATTGAACTGAAAAC 60.401 52.381 5.05 0.00 0.00 2.43
8031 8828 1.265635 CGCCGGATTGAACTGAAAACA 59.734 47.619 5.05 0.00 0.00 2.83
8032 8829 2.661594 GCCGGATTGAACTGAAAACAC 58.338 47.619 5.05 0.00 0.00 3.32
8033 8830 2.916111 CCGGATTGAACTGAAAACACG 58.084 47.619 0.00 0.00 0.00 4.49
8034 8831 2.350388 CCGGATTGAACTGAAAACACGG 60.350 50.000 0.00 0.00 0.00 4.94
8035 8832 2.289547 CGGATTGAACTGAAAACACGGT 59.710 45.455 0.00 0.00 0.00 4.83
8036 8833 3.242936 CGGATTGAACTGAAAACACGGTT 60.243 43.478 0.00 0.00 41.30 4.44
8037 8834 4.041723 GGATTGAACTGAAAACACGGTTG 58.958 43.478 0.00 0.00 39.13 3.77
8038 8835 2.553079 TGAACTGAAAACACGGTTGC 57.447 45.000 0.00 0.00 39.13 4.17
8039 8836 1.813178 TGAACTGAAAACACGGTTGCA 59.187 42.857 0.00 0.00 39.13 4.08
8040 8837 2.229062 TGAACTGAAAACACGGTTGCAA 59.771 40.909 0.00 0.00 39.13 4.08
8041 8838 3.119316 TGAACTGAAAACACGGTTGCAAT 60.119 39.130 0.59 0.00 39.13 3.56
8042 8839 2.808244 ACTGAAAACACGGTTGCAATG 58.192 42.857 0.59 0.00 0.00 2.82
8043 8840 2.425312 ACTGAAAACACGGTTGCAATGA 59.575 40.909 0.59 0.00 0.00 2.57
8044 8841 3.119316 ACTGAAAACACGGTTGCAATGAA 60.119 39.130 0.59 0.00 0.00 2.57
8045 8842 4.050553 CTGAAAACACGGTTGCAATGAAT 58.949 39.130 0.59 0.00 0.00 2.57
8046 8843 5.188327 TGAAAACACGGTTGCAATGAATA 57.812 34.783 0.59 0.00 0.00 1.75
8047 8844 5.218885 TGAAAACACGGTTGCAATGAATAG 58.781 37.500 0.59 0.00 0.00 1.73
8048 8845 4.846779 AAACACGGTTGCAATGAATAGT 57.153 36.364 0.59 0.00 0.00 2.12
8049 8846 4.846779 AACACGGTTGCAATGAATAGTT 57.153 36.364 0.59 0.85 0.00 2.24
8050 8847 4.846779 ACACGGTTGCAATGAATAGTTT 57.153 36.364 0.59 0.00 0.00 2.66
8051 8848 4.545610 ACACGGTTGCAATGAATAGTTTG 58.454 39.130 0.59 0.00 0.00 2.93
8052 8849 3.364621 CACGGTTGCAATGAATAGTTTGC 59.635 43.478 0.59 0.88 46.53 3.68
8053 8850 3.255642 ACGGTTGCAATGAATAGTTTGCT 59.744 39.130 0.59 0.00 46.50 3.91
8054 8851 4.236935 CGGTTGCAATGAATAGTTTGCTT 58.763 39.130 0.59 0.00 46.50 3.91
8055 8852 4.324402 CGGTTGCAATGAATAGTTTGCTTC 59.676 41.667 0.59 2.78 46.50 3.86
8056 8853 4.627035 GGTTGCAATGAATAGTTTGCTTCC 59.373 41.667 0.59 7.32 46.50 3.46
8057 8854 4.454728 TGCAATGAATAGTTTGCTTCCC 57.545 40.909 8.84 0.00 46.50 3.97
8058 8855 3.831333 TGCAATGAATAGTTTGCTTCCCA 59.169 39.130 8.84 0.00 46.50 4.37
8059 8856 4.082081 TGCAATGAATAGTTTGCTTCCCAG 60.082 41.667 8.84 0.00 46.50 4.45
8060 8857 7.576451 TGCAATGAATAGTTTGCTTCCCAGC 62.576 44.000 8.84 0.00 46.50 4.85
8074 8871 6.456795 GCTTCCCAGCTAAAATATCTTGTT 57.543 37.500 0.00 0.00 43.51 2.83
8075 8872 6.499172 GCTTCCCAGCTAAAATATCTTGTTC 58.501 40.000 0.00 0.00 43.51 3.18
8076 8873 6.460261 GCTTCCCAGCTAAAATATCTTGTTCC 60.460 42.308 0.00 0.00 43.51 3.62
8077 8874 6.073447 TCCCAGCTAAAATATCTTGTTCCA 57.927 37.500 0.00 0.00 0.00 3.53
8078 8875 5.885912 TCCCAGCTAAAATATCTTGTTCCAC 59.114 40.000 0.00 0.00 0.00 4.02
8079 8876 5.067805 CCCAGCTAAAATATCTTGTTCCACC 59.932 44.000 0.00 0.00 0.00 4.61
8080 8877 5.220854 CCAGCTAAAATATCTTGTTCCACCG 60.221 44.000 0.00 0.00 0.00 4.94
8081 8878 4.335594 AGCTAAAATATCTTGTTCCACCGC 59.664 41.667 0.00 0.00 0.00 5.68
8082 8879 4.497507 GCTAAAATATCTTGTTCCACCGCC 60.498 45.833 0.00 0.00 0.00 6.13
8083 8880 1.663695 AATATCTTGTTCCACCGCCG 58.336 50.000 0.00 0.00 0.00 6.46
8084 8881 0.539986 ATATCTTGTTCCACCGCCGT 59.460 50.000 0.00 0.00 0.00 5.68
8085 8882 0.322322 TATCTTGTTCCACCGCCGTT 59.678 50.000 0.00 0.00 0.00 4.44
8086 8883 0.322322 ATCTTGTTCCACCGCCGTTA 59.678 50.000 0.00 0.00 0.00 3.18
8087 8884 0.322322 TCTTGTTCCACCGCCGTTAT 59.678 50.000 0.00 0.00 0.00 1.89
8088 8885 1.161843 CTTGTTCCACCGCCGTTATT 58.838 50.000 0.00 0.00 0.00 1.40
8089 8886 2.028294 TCTTGTTCCACCGCCGTTATTA 60.028 45.455 0.00 0.00 0.00 0.98
8090 8887 1.724429 TGTTCCACCGCCGTTATTAC 58.276 50.000 0.00 0.00 0.00 1.89
8100 8897 2.011453 CGTTATTACGGTGCCCTGC 58.989 57.895 0.00 0.00 43.94 4.85
8101 8898 1.433837 CGTTATTACGGTGCCCTGCC 61.434 60.000 0.00 0.00 43.94 4.85
8102 8899 0.393267 GTTATTACGGTGCCCTGCCA 60.393 55.000 0.00 0.00 0.00 4.92
8103 8900 0.328592 TTATTACGGTGCCCTGCCAA 59.671 50.000 0.00 0.00 0.00 4.52
8104 8901 0.107410 TATTACGGTGCCCTGCCAAG 60.107 55.000 0.00 0.00 0.00 3.61
8105 8902 2.837031 ATTACGGTGCCCTGCCAAGG 62.837 60.000 0.00 0.00 44.06 3.61
8120 8917 1.066454 CCAAGGGCGTTTTCGTCTTTT 59.934 47.619 0.00 0.00 44.26 2.27
8121 8918 2.381589 CAAGGGCGTTTTCGTCTTTTC 58.618 47.619 0.00 0.00 44.26 2.29
8122 8919 2.018515 AAGGGCGTTTTCGTCTTTTCA 58.981 42.857 0.00 0.00 44.26 2.69
8123 8920 2.223409 AAGGGCGTTTTCGTCTTTTCAC 60.223 45.455 0.00 0.00 44.26 3.18
8124 8921 2.461897 GGCGTTTTCGTCTTTTCACA 57.538 45.000 0.00 0.00 45.16 3.58
8125 8922 2.994849 GGCGTTTTCGTCTTTTCACAT 58.005 42.857 0.00 0.00 45.16 3.21
8126 8923 2.719046 GGCGTTTTCGTCTTTTCACATG 59.281 45.455 0.00 0.00 45.16 3.21
8127 8924 3.359654 GCGTTTTCGTCTTTTCACATGT 58.640 40.909 0.00 0.00 46.03 3.21
8128 8925 3.789224 GCGTTTTCGTCTTTTCACATGTT 59.211 39.130 0.00 0.00 46.03 2.71
8129 8926 4.316377 GCGTTTTCGTCTTTTCACATGTTG 60.316 41.667 0.00 0.00 46.03 3.33
8130 8927 4.204168 CGTTTTCGTCTTTTCACATGTTGG 59.796 41.667 0.00 0.00 38.65 3.77
8131 8928 3.347958 TTCGTCTTTTCACATGTTGGC 57.652 42.857 0.00 0.00 0.00 4.52
8132 8929 1.606668 TCGTCTTTTCACATGTTGGCC 59.393 47.619 0.00 0.00 0.00 5.36
8133 8930 1.335872 CGTCTTTTCACATGTTGGCCC 60.336 52.381 0.00 0.00 0.00 5.80
8134 8931 1.686052 GTCTTTTCACATGTTGGCCCA 59.314 47.619 0.00 0.00 0.00 5.36
8135 8932 2.299867 GTCTTTTCACATGTTGGCCCAT 59.700 45.455 0.00 0.00 0.00 4.00
8136 8933 2.299582 TCTTTTCACATGTTGGCCCATG 59.700 45.455 17.57 17.57 46.14 3.66
8137 8934 2.006805 TTTCACATGTTGGCCCATGA 57.993 45.000 23.89 5.31 43.99 3.07
8138 8935 1.255882 TTCACATGTTGGCCCATGAC 58.744 50.000 23.89 8.51 43.99 3.06
8139 8936 0.959867 TCACATGTTGGCCCATGACG 60.960 55.000 23.89 15.60 43.99 4.35
8140 8937 2.342650 ACATGTTGGCCCATGACGC 61.343 57.895 23.89 0.00 43.99 5.19
8141 8938 3.133464 ATGTTGGCCCATGACGCG 61.133 61.111 3.53 3.53 0.00 6.01
8142 8939 3.918253 ATGTTGGCCCATGACGCGT 62.918 57.895 13.85 13.85 0.00 6.01
8143 8940 3.361977 GTTGGCCCATGACGCGTT 61.362 61.111 15.53 0.00 0.00 4.84
8144 8941 3.361158 TTGGCCCATGACGCGTTG 61.361 61.111 15.53 8.89 0.00 4.10
8145 8942 3.834013 TTGGCCCATGACGCGTTGA 62.834 57.895 15.53 3.23 0.00 3.18
8146 8943 2.824041 GGCCCATGACGCGTTGAT 60.824 61.111 15.53 5.98 0.00 2.57
8147 8944 2.709475 GCCCATGACGCGTTGATC 59.291 61.111 15.53 0.00 0.00 2.92
8148 8945 2.823829 GCCCATGACGCGTTGATCC 61.824 63.158 15.53 0.00 0.00 3.36
8149 8946 2.180204 CCCATGACGCGTTGATCCC 61.180 63.158 15.53 0.00 0.00 3.85
8150 8947 1.153369 CCATGACGCGTTGATCCCT 60.153 57.895 15.53 0.00 0.00 4.20
8151 8948 1.431488 CCATGACGCGTTGATCCCTG 61.431 60.000 15.53 3.00 0.00 4.45
8152 8949 1.153369 ATGACGCGTTGATCCCTGG 60.153 57.895 15.53 0.00 0.00 4.45
8153 8950 1.899437 ATGACGCGTTGATCCCTGGT 61.899 55.000 15.53 0.00 0.00 4.00
8154 8951 1.375523 GACGCGTTGATCCCTGGTT 60.376 57.895 15.53 0.00 0.00 3.67
8155 8952 1.635663 GACGCGTTGATCCCTGGTTG 61.636 60.000 15.53 0.00 0.00 3.77
8156 8953 2.398554 CGCGTTGATCCCTGGTTGG 61.399 63.158 0.00 0.00 0.00 3.77
8157 8954 2.700773 GCGTTGATCCCTGGTTGGC 61.701 63.158 0.00 0.00 0.00 4.52
8158 8955 2.046285 CGTTGATCCCTGGTTGGCC 61.046 63.158 0.00 0.00 0.00 5.36
8159 8956 1.682344 GTTGATCCCTGGTTGGCCC 60.682 63.158 0.00 0.00 0.00 5.80
8160 8957 3.280938 TTGATCCCTGGTTGGCCCG 62.281 63.158 0.00 0.00 35.15 6.13
8161 8958 3.728373 GATCCCTGGTTGGCCCGT 61.728 66.667 0.00 0.00 35.15 5.28
8162 8959 3.699134 GATCCCTGGTTGGCCCGTC 62.699 68.421 0.00 0.00 35.15 4.79
8164 8961 4.278513 CCCTGGTTGGCCCGTCAA 62.279 66.667 0.00 0.00 35.15 3.18
8165 8962 2.035626 CCTGGTTGGCCCGTCAAT 59.964 61.111 0.00 0.00 35.15 2.57
8166 8963 2.342650 CCTGGTTGGCCCGTCAATG 61.343 63.158 0.00 0.00 35.15 2.82
8167 8964 2.282816 TGGTTGGCCCGTCAATGG 60.283 61.111 0.00 0.00 35.15 3.16
8168 8965 2.034999 GGTTGGCCCGTCAATGGA 59.965 61.111 0.00 0.00 0.00 3.41
8169 8966 1.379843 GGTTGGCCCGTCAATGGAT 60.380 57.895 0.00 0.00 0.00 3.41
8170 8967 1.666209 GGTTGGCCCGTCAATGGATG 61.666 60.000 0.00 0.00 0.00 3.51
8171 8968 0.679640 GTTGGCCCGTCAATGGATGA 60.680 55.000 0.00 0.00 35.05 2.92
8172 8969 0.394216 TTGGCCCGTCAATGGATGAG 60.394 55.000 0.00 0.00 39.19 2.90
8173 8970 1.271127 TGGCCCGTCAATGGATGAGA 61.271 55.000 0.00 0.00 39.19 3.27
8174 8971 0.815615 GGCCCGTCAATGGATGAGAC 60.816 60.000 0.00 0.00 39.19 3.36
8179 8976 2.231215 GTCAATGGATGAGACGAGGG 57.769 55.000 0.00 0.00 39.19 4.30
8180 8977 1.757118 GTCAATGGATGAGACGAGGGA 59.243 52.381 0.00 0.00 39.19 4.20
8181 8978 2.034878 TCAATGGATGAGACGAGGGAG 58.965 52.381 0.00 0.00 33.04 4.30
8182 8979 1.069823 CAATGGATGAGACGAGGGAGG 59.930 57.143 0.00 0.00 0.00 4.30
8183 8980 0.470833 ATGGATGAGACGAGGGAGGG 60.471 60.000 0.00 0.00 0.00 4.30
8184 8981 2.503382 GGATGAGACGAGGGAGGGC 61.503 68.421 0.00 0.00 0.00 5.19
8185 8982 2.835431 ATGAGACGAGGGAGGGCG 60.835 66.667 0.00 0.00 0.00 6.13
8186 8983 3.663815 ATGAGACGAGGGAGGGCGT 62.664 63.158 0.00 0.00 44.33 5.68
8200 8997 4.443266 GCGTCTGCCTCGCCTCTT 62.443 66.667 6.09 0.00 46.61 2.85
8201 8998 2.202676 CGTCTGCCTCGCCTCTTC 60.203 66.667 0.00 0.00 0.00 2.87
8202 8999 2.202676 GTCTGCCTCGCCTCTTCG 60.203 66.667 0.00 0.00 0.00 3.79
8203 9000 2.676822 TCTGCCTCGCCTCTTCGT 60.677 61.111 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.142249 GGCTTTTTATTTCCGGCTATGTGT 60.142 41.667 0.00 0.00 0.00 3.72
24 25 4.359706 GGCTTTTTATTTCCGGCTATGTG 58.640 43.478 0.00 0.00 0.00 3.21
26 27 3.628017 CGGCTTTTTATTTCCGGCTATG 58.372 45.455 0.00 0.00 38.35 2.23
27 28 2.034179 GCGGCTTTTTATTTCCGGCTAT 59.966 45.455 0.00 0.00 41.96 2.97
31 38 1.068194 TGTGCGGCTTTTTATTTCCGG 60.068 47.619 0.00 0.00 41.96 5.14
35 42 4.303282 ACGAAATGTGCGGCTTTTTATTT 58.697 34.783 0.00 1.38 0.00 1.40
38 45 4.220572 GTTACGAAATGTGCGGCTTTTTA 58.779 39.130 0.00 0.00 0.00 1.52
60 67 6.270463 TGGACTCTGGACTAGTAGTATAGAGG 59.730 46.154 29.01 18.99 40.13 3.69
67 74 3.847780 ACTCTGGACTCTGGACTAGTAGT 59.152 47.826 1.37 1.37 0.00 2.73
74 81 4.274147 TCTTGATACTCTGGACTCTGGAC 58.726 47.826 0.00 0.00 0.00 4.02
76 83 4.501229 GCATCTTGATACTCTGGACTCTGG 60.501 50.000 0.00 0.00 0.00 3.86
77 84 4.099113 TGCATCTTGATACTCTGGACTCTG 59.901 45.833 0.00 0.00 0.00 3.35
78 85 4.099266 GTGCATCTTGATACTCTGGACTCT 59.901 45.833 0.00 0.00 0.00 3.24
79 86 4.099266 AGTGCATCTTGATACTCTGGACTC 59.901 45.833 0.00 0.00 33.96 3.36
82 89 5.426689 AAAGTGCATCTTGATACTCTGGA 57.573 39.130 0.00 0.00 36.40 3.86
83 90 6.108687 TGTAAAGTGCATCTTGATACTCTGG 58.891 40.000 0.00 0.00 36.40 3.86
84 91 6.238049 GCTGTAAAGTGCATCTTGATACTCTG 60.238 42.308 0.00 0.00 36.40 3.35
85 92 5.814705 GCTGTAAAGTGCATCTTGATACTCT 59.185 40.000 0.00 0.00 36.40 3.24
86 93 5.276584 CGCTGTAAAGTGCATCTTGATACTC 60.277 44.000 0.00 0.00 36.40 2.59
89 96 4.754322 TCGCTGTAAAGTGCATCTTGATA 58.246 39.130 0.00 0.00 36.40 2.15
90 97 3.599343 TCGCTGTAAAGTGCATCTTGAT 58.401 40.909 0.00 0.00 36.40 2.57
91 98 2.995939 CTCGCTGTAAAGTGCATCTTGA 59.004 45.455 0.00 0.00 36.40 3.02
92 99 2.995939 TCTCGCTGTAAAGTGCATCTTG 59.004 45.455 0.00 0.00 36.40 3.02
148 166 2.808206 GGTCTCGCGGGGATGGATT 61.808 63.158 5.94 0.00 0.00 3.01
198 216 3.692406 GTCCCTCCTGCGTTCCGT 61.692 66.667 0.00 0.00 0.00 4.69
264 317 6.251471 GGATTTGTGGGGAGATGATGATAAT 58.749 40.000 0.00 0.00 0.00 1.28
270 323 2.444766 GAGGGATTTGTGGGGAGATGAT 59.555 50.000 0.00 0.00 0.00 2.45
271 324 1.846439 GAGGGATTTGTGGGGAGATGA 59.154 52.381 0.00 0.00 0.00 2.92
300 354 1.594293 CGAATCGATGGGGAACGGG 60.594 63.158 0.00 0.00 0.00 5.28
301 355 0.033504 ATCGAATCGATGGGGAACGG 59.966 55.000 18.03 0.00 45.24 4.44
302 356 1.865865 AATCGAATCGATGGGGAACG 58.134 50.000 19.44 0.00 46.30 3.95
303 357 2.221055 CGAAATCGAATCGATGGGGAAC 59.779 50.000 19.44 6.45 46.30 3.62
304 358 2.101750 TCGAAATCGAATCGATGGGGAA 59.898 45.455 19.44 1.71 46.30 3.97
305 359 1.684450 TCGAAATCGAATCGATGGGGA 59.316 47.619 19.44 12.81 46.30 4.81
317 371 1.227853 GGGGTGGGGATCGAAATCG 60.228 63.158 0.00 0.00 41.45 3.34
318 372 1.227853 CGGGGTGGGGATCGAAATC 60.228 63.158 0.00 0.00 0.00 2.17
319 373 2.752807 CCGGGGTGGGGATCGAAAT 61.753 63.158 0.00 0.00 0.00 2.17
320 374 3.404438 CCGGGGTGGGGATCGAAA 61.404 66.667 0.00 0.00 0.00 3.46
362 433 4.068280 TTTTTCCTCGGCCCGTTC 57.932 55.556 1.63 0.00 0.00 3.95
379 450 6.573434 AGAAGCGAAAAGAAAGAAATGGTTT 58.427 32.000 0.00 0.00 0.00 3.27
558 730 2.040359 GAGGAAGGGAGGGAGGGG 60.040 72.222 0.00 0.00 0.00 4.79
561 733 1.074850 GGAGGAGGAAGGGAGGGAG 60.075 68.421 0.00 0.00 0.00 4.30
562 734 3.010226 CGGAGGAGGAAGGGAGGGA 62.010 68.421 0.00 0.00 0.00 4.20
643 1104 4.475444 CCCTAGCCGTCCCCTGGA 62.475 72.222 0.00 0.00 0.00 3.86
955 1427 4.183686 CTGGCGGAATGCTTGGCG 62.184 66.667 0.00 0.00 45.43 5.69
1266 1738 4.387211 CCCTTCTTCCCATCAGATCCATTT 60.387 45.833 0.00 0.00 0.00 2.32
1458 1930 2.032681 GGAACAGGCTGCTCGGTT 59.967 61.111 15.89 0.00 0.00 4.44
1494 1966 1.339151 CCCTTCCCTCTTCCAAACGAG 60.339 57.143 0.00 0.00 0.00 4.18
1515 1987 0.817634 TCCCTGCGGTGTCAACTTTG 60.818 55.000 0.00 0.00 0.00 2.77
1671 2143 2.507058 CCTCTCATTTCCATCCTGGTGA 59.493 50.000 0.00 0.00 39.03 4.02
1749 2221 1.566298 GCCTGTTCCCCTCATCAGGT 61.566 60.000 10.94 0.00 46.23 4.00
1763 2235 1.120530 CCCCGAGTAATACTGCCTGT 58.879 55.000 0.00 0.00 0.00 4.00
2082 2555 4.272504 TCAACTTGCAGCTACTGTTGTAAC 59.727 41.667 16.93 0.00 39.03 2.50
2101 2574 5.813157 GGCTCAAGAGTAAGGTAGAATCAAC 59.187 44.000 0.00 0.00 0.00 3.18
2175 2648 2.558795 ACACAGTCGCAGTTCTGTAGAT 59.441 45.455 1.78 0.00 40.16 1.98
2207 2680 1.392589 AGTTGCAGTTTCCTGTGGTG 58.607 50.000 0.00 0.00 41.02 4.17
2420 2893 8.962679 AGAACTGTAAACAAAACCATTCAAGTA 58.037 29.630 0.00 0.00 0.00 2.24
2445 2918 8.567948 AGTGGACAATTGTTACAAGTTCATTAG 58.432 33.333 21.53 0.00 0.00 1.73
2486 2959 6.170506 ACGGCAATGACTCTAGAACAATTAA 58.829 36.000 0.00 0.00 0.00 1.40
2673 3146 7.607607 ACAGTACAAATCATGTTATCTCAAGCA 59.392 33.333 0.00 0.00 43.63 3.91
3087 3574 4.005487 TCAACAAGCAAATGGGAAATGG 57.995 40.909 0.00 0.00 0.00 3.16
3144 3631 6.790232 ACCAAAGATCAAAGTTTCCAGAAA 57.210 33.333 0.00 0.00 0.00 2.52
3166 3653 8.894768 AGATTCAATTTGCCTACTGATACTAC 57.105 34.615 0.00 0.00 0.00 2.73
3484 3985 5.106712 ACATGTAGGTCAAGTGTTAAATGCG 60.107 40.000 0.00 0.00 0.00 4.73
3533 4034 3.560453 GGATAACCAACTACTGCCAACCA 60.560 47.826 0.00 0.00 35.97 3.67
3834 4335 6.326064 ACTGCTCACCAGATATGTAAGAATCT 59.674 38.462 0.00 0.00 44.64 2.40
4170 4671 1.139058 AGACTTTCACGCACCTCACTT 59.861 47.619 0.00 0.00 0.00 3.16
4276 4777 5.689961 TCGCATTAACCTTTTTCTTTTCTGC 59.310 36.000 0.00 0.00 0.00 4.26
4278 4779 7.384932 CCATTCGCATTAACCTTTTTCTTTTCT 59.615 33.333 0.00 0.00 0.00 2.52
4572 5073 9.996554 TTTCTTGATCTAACAACATCAGAAGTA 57.003 29.630 0.00 0.00 30.68 2.24
4825 5326 4.670765 AGCAATCAAGGAATCAAGGACTT 58.329 39.130 0.00 0.00 0.00 3.01
4866 5367 8.189119 TGTCCATTTCCTTTTAAGCTTAACAT 57.811 30.769 18.45 2.18 0.00 2.71
4946 5447 6.498304 ACAAGCATCTTTACACAGAAACAAG 58.502 36.000 0.00 0.00 0.00 3.16
5323 5824 9.367160 CCATGGGAACTAAATAAGACCAATAAT 57.633 33.333 2.85 0.00 33.23 1.28
5326 5827 6.980577 TCCATGGGAACTAAATAAGACCAAT 58.019 36.000 13.02 0.00 33.23 3.16
5394 5895 8.816640 GAAGGAAAATGCTTCAGTAAAATCAA 57.183 30.769 6.72 0.00 43.23 2.57
5564 6067 7.572523 TTAGATCATTTGGCCAAGATAACTG 57.427 36.000 19.48 10.43 0.00 3.16
6287 7040 3.646162 TGTCATAAGGTAGGCCCAGTATG 59.354 47.826 0.00 1.04 35.93 2.39
6520 7275 7.912250 ACATTAAAGAAATATGCGCTGAAAGAG 59.088 33.333 9.73 0.00 34.07 2.85
6576 7331 7.868415 GCCTCATTTCCATACTAGTACTGTTAG 59.132 40.741 4.31 0.00 0.00 2.34
6695 7450 7.812191 GCATGTGTAAGATGAAACACCAAATAA 59.188 33.333 3.39 0.00 40.63 1.40
6749 7504 9.466497 TTGAAAAAGAACCTGAAGAGCATATAT 57.534 29.630 0.00 0.00 0.00 0.86
6838 7593 4.124351 CGCCCCTGTGCAAGCATG 62.124 66.667 0.00 0.00 0.00 4.06
6869 7624 6.267817 ACAACATGTGATTCTTTGTGAAGTG 58.732 36.000 0.00 0.00 38.18 3.16
6920 7675 4.741676 GTGAGTGAAAAAGAAACATGGCAG 59.258 41.667 0.00 0.00 0.00 4.85
6921 7676 4.681744 GTGAGTGAAAAAGAAACATGGCA 58.318 39.130 0.00 0.00 0.00 4.92
6932 7687 1.092921 AGGTGCGCGTGAGTGAAAAA 61.093 50.000 8.43 0.00 46.66 1.94
6943 7698 0.302890 GAATCTGAATCAGGTGCGCG 59.697 55.000 10.71 0.00 31.51 6.86
6946 7701 2.172293 AGGAGGAATCTGAATCAGGTGC 59.828 50.000 10.71 0.82 31.51 5.01
7003 7758 2.289072 TGCTACTCTCCTGAAGCACAAC 60.289 50.000 0.00 0.00 39.92 3.32
7017 7772 5.776173 TCAAGTATTCTAGCCTGCTACTC 57.224 43.478 0.00 0.00 0.00 2.59
7080 7835 2.586258 ACTCGATGAAACCCTGATCG 57.414 50.000 0.00 0.00 40.26 3.69
7083 7838 3.485463 ACAAACTCGATGAAACCCTGA 57.515 42.857 0.00 0.00 0.00 3.86
7086 7841 4.561735 TGAAACAAACTCGATGAAACCC 57.438 40.909 0.00 0.00 0.00 4.11
7286 8043 8.413309 TCATCTTGATCTTCCATCAAAACTTT 57.587 30.769 0.00 0.00 37.55 2.66
7300 8057 9.767228 CTAGAACAGATTTCATCATCTTGATCT 57.233 33.333 0.00 0.00 34.28 2.75
7302 8059 7.991460 TGCTAGAACAGATTTCATCATCTTGAT 59.009 33.333 0.00 0.00 37.65 2.57
7303 8060 7.279536 GTGCTAGAACAGATTTCATCATCTTGA 59.720 37.037 0.00 0.00 30.50 3.02
7304 8061 7.408123 GTGCTAGAACAGATTTCATCATCTTG 58.592 38.462 0.00 0.00 30.50 3.02
7331 8088 0.034756 GTTTGTTTCCATGGGTGGCC 59.965 55.000 13.02 0.00 45.63 5.36
7523 8283 8.593679 CCTATTCCTACAAGAAAAATGGGTTTT 58.406 33.333 0.00 0.00 42.28 2.43
7697 8477 5.466127 TGGCCCAATCCTAAGACTAAAAT 57.534 39.130 0.00 0.00 0.00 1.82
7724 8504 5.324697 GCATGTTAAAAAGAAGGTAGCTCG 58.675 41.667 0.00 0.00 0.00 5.03
7725 8505 5.324697 CGCATGTTAAAAAGAAGGTAGCTC 58.675 41.667 0.00 0.00 0.00 4.09
7769 8566 3.876914 AGAACTTCGCATGAGTTTCACAA 59.123 39.130 0.00 0.00 0.00 3.33
7812 8609 8.293157 GGGAGAACTAAAGAATCAAAACTCAAG 58.707 37.037 0.00 0.00 0.00 3.02
7826 8623 7.386848 TGAAAATCAACTACGGGAGAACTAAAG 59.613 37.037 0.00 0.00 0.00 1.85
7831 8628 5.934935 TTGAAAATCAACTACGGGAGAAC 57.065 39.130 0.00 0.00 30.26 3.01
7835 8632 6.596497 GGTAAGATTGAAAATCAACTACGGGA 59.404 38.462 3.03 0.00 39.45 5.14
7846 8643 8.421249 TGAATGGTTCAGGTAAGATTGAAAAT 57.579 30.769 0.00 0.00 35.29 1.82
7892 8689 7.792032 TGTTCTCCCAACTAACTTATATCTGG 58.208 38.462 0.00 0.00 0.00 3.86
7893 8690 9.265901 CATGTTCTCCCAACTAACTTATATCTG 57.734 37.037 0.00 0.00 0.00 2.90
7894 8691 9.213777 TCATGTTCTCCCAACTAACTTATATCT 57.786 33.333 0.00 0.00 0.00 1.98
7895 8692 9.482627 CTCATGTTCTCCCAACTAACTTATATC 57.517 37.037 0.00 0.00 0.00 1.63
7896 8693 8.432805 CCTCATGTTCTCCCAACTAACTTATAT 58.567 37.037 0.00 0.00 0.00 0.86
7897 8694 7.635089 GCCTCATGTTCTCCCAACTAACTTATA 60.635 40.741 0.00 0.00 0.00 0.98
7898 8695 6.653989 CCTCATGTTCTCCCAACTAACTTAT 58.346 40.000 0.00 0.00 0.00 1.73
7899 8696 5.570844 GCCTCATGTTCTCCCAACTAACTTA 60.571 44.000 0.00 0.00 0.00 2.24
7900 8697 4.807643 GCCTCATGTTCTCCCAACTAACTT 60.808 45.833 0.00 0.00 0.00 2.66
7901 8698 3.307762 GCCTCATGTTCTCCCAACTAACT 60.308 47.826 0.00 0.00 0.00 2.24
7902 8699 3.010420 GCCTCATGTTCTCCCAACTAAC 58.990 50.000 0.00 0.00 0.00 2.34
7903 8700 2.912956 AGCCTCATGTTCTCCCAACTAA 59.087 45.455 0.00 0.00 0.00 2.24
7904 8701 2.551270 AGCCTCATGTTCTCCCAACTA 58.449 47.619 0.00 0.00 0.00 2.24
7905 8702 1.366319 AGCCTCATGTTCTCCCAACT 58.634 50.000 0.00 0.00 0.00 3.16
7906 8703 2.087646 GAAGCCTCATGTTCTCCCAAC 58.912 52.381 0.00 0.00 0.00 3.77
7907 8704 1.988107 AGAAGCCTCATGTTCTCCCAA 59.012 47.619 0.00 0.00 0.00 4.12
7908 8705 1.556911 GAGAAGCCTCATGTTCTCCCA 59.443 52.381 11.07 0.00 41.93 4.37
7909 8706 1.556911 TGAGAAGCCTCATGTTCTCCC 59.443 52.381 16.81 0.46 45.53 4.30
7918 8715 1.184431 CTGAGCTCTGAGAAGCCTCA 58.816 55.000 16.19 10.24 46.48 3.86
7919 8716 0.179103 GCTGAGCTCTGAGAAGCCTC 60.179 60.000 23.35 6.01 43.56 4.70
7920 8717 1.899617 GCTGAGCTCTGAGAAGCCT 59.100 57.895 23.35 0.00 43.56 4.58
7921 8718 1.519013 CGCTGAGCTCTGAGAAGCC 60.519 63.158 23.35 4.43 43.56 4.35
7922 8719 0.801836 GTCGCTGAGCTCTGAGAAGC 60.802 60.000 24.46 18.27 42.82 3.86
7923 8720 0.810648 AGTCGCTGAGCTCTGAGAAG 59.189 55.000 24.46 10.66 0.00 2.85
7924 8721 0.808125 GAGTCGCTGAGCTCTGAGAA 59.192 55.000 24.46 9.68 0.00 2.87
7925 8722 0.035534 AGAGTCGCTGAGCTCTGAGA 60.036 55.000 23.35 21.74 40.24 3.27
7926 8723 0.378257 GAGAGTCGCTGAGCTCTGAG 59.622 60.000 23.35 19.82 41.63 3.35
7927 8724 0.322008 TGAGAGTCGCTGAGCTCTGA 60.322 55.000 23.35 11.72 41.63 3.27
7928 8725 0.099259 CTGAGAGTCGCTGAGCTCTG 59.901 60.000 16.19 15.96 41.63 3.35
7929 8726 2.481212 CTGAGAGTCGCTGAGCTCT 58.519 57.895 16.19 0.00 43.95 4.09
7936 8733 1.181741 TCCAACAGCTGAGAGTCGCT 61.182 55.000 23.35 0.00 36.83 4.93
7937 8734 0.108424 ATCCAACAGCTGAGAGTCGC 60.108 55.000 23.35 0.00 0.00 5.19
7938 8735 1.796982 CGATCCAACAGCTGAGAGTCG 60.797 57.143 23.35 17.81 0.00 4.18
7939 8736 1.203523 ACGATCCAACAGCTGAGAGTC 59.796 52.381 23.35 10.35 0.00 3.36
7940 8737 1.261480 ACGATCCAACAGCTGAGAGT 58.739 50.000 23.35 7.27 0.00 3.24
7941 8738 2.376808 AACGATCCAACAGCTGAGAG 57.623 50.000 23.35 9.25 0.00 3.20
7942 8739 2.807967 CAAAACGATCCAACAGCTGAGA 59.192 45.455 23.35 14.25 0.00 3.27
7943 8740 2.666619 GCAAAACGATCCAACAGCTGAG 60.667 50.000 23.35 12.34 0.00 3.35
7944 8741 1.266718 GCAAAACGATCCAACAGCTGA 59.733 47.619 23.35 0.00 0.00 4.26
7945 8742 1.267806 AGCAAAACGATCCAACAGCTG 59.732 47.619 13.48 13.48 0.00 4.24
7946 8743 1.609208 AGCAAAACGATCCAACAGCT 58.391 45.000 0.00 0.00 0.00 4.24
7947 8744 2.053627 CAAGCAAAACGATCCAACAGC 58.946 47.619 0.00 0.00 0.00 4.40
7948 8745 3.624326 TCAAGCAAAACGATCCAACAG 57.376 42.857 0.00 0.00 0.00 3.16
7949 8746 3.856638 GCATCAAGCAAAACGATCCAACA 60.857 43.478 0.00 0.00 44.79 3.33
7950 8747 2.663119 GCATCAAGCAAAACGATCCAAC 59.337 45.455 0.00 0.00 44.79 3.77
7951 8748 2.668001 CGCATCAAGCAAAACGATCCAA 60.668 45.455 0.00 0.00 46.13 3.53
7952 8749 1.135717 CGCATCAAGCAAAACGATCCA 60.136 47.619 0.00 0.00 46.13 3.41
7953 8750 1.135689 ACGCATCAAGCAAAACGATCC 60.136 47.619 0.00 0.00 46.13 3.36
7954 8751 2.247311 ACGCATCAAGCAAAACGATC 57.753 45.000 0.00 0.00 46.13 3.69
7955 8752 2.704725 AACGCATCAAGCAAAACGAT 57.295 40.000 0.00 0.00 46.13 3.73
7956 8753 2.115595 CAAACGCATCAAGCAAAACGA 58.884 42.857 0.00 0.00 46.13 3.85
7957 8754 1.189884 CCAAACGCATCAAGCAAAACG 59.810 47.619 0.00 0.00 46.13 3.60
7958 8755 1.526464 CCCAAACGCATCAAGCAAAAC 59.474 47.619 0.00 0.00 46.13 2.43
7959 8756 1.410517 TCCCAAACGCATCAAGCAAAA 59.589 42.857 0.00 0.00 46.13 2.44
7960 8757 1.035923 TCCCAAACGCATCAAGCAAA 58.964 45.000 0.00 0.00 46.13 3.68
7961 8758 0.313672 GTCCCAAACGCATCAAGCAA 59.686 50.000 0.00 0.00 46.13 3.91
7962 8759 1.523154 GGTCCCAAACGCATCAAGCA 61.523 55.000 0.00 0.00 46.13 3.91
7963 8760 1.212751 GGTCCCAAACGCATCAAGC 59.787 57.895 0.00 0.00 40.87 4.01
7964 8761 1.234615 ACGGTCCCAAACGCATCAAG 61.235 55.000 0.00 0.00 0.00 3.02
7965 8762 1.228003 ACGGTCCCAAACGCATCAA 60.228 52.632 0.00 0.00 0.00 2.57
7966 8763 1.669760 GACGGTCCCAAACGCATCA 60.670 57.895 0.00 0.00 0.00 3.07
7967 8764 1.635663 CTGACGGTCCCAAACGCATC 61.636 60.000 5.55 0.00 0.00 3.91
7968 8765 1.671054 CTGACGGTCCCAAACGCAT 60.671 57.895 5.55 0.00 0.00 4.73
7969 8766 2.107041 ATCTGACGGTCCCAAACGCA 62.107 55.000 5.55 0.00 0.00 5.24
7970 8767 1.359459 GATCTGACGGTCCCAAACGC 61.359 60.000 5.55 0.00 0.00 4.84
7971 8768 1.076533 CGATCTGACGGTCCCAAACG 61.077 60.000 5.55 2.06 0.00 3.60
7972 8769 0.245539 TCGATCTGACGGTCCCAAAC 59.754 55.000 5.55 0.00 0.00 2.93
7973 8770 0.530744 CTCGATCTGACGGTCCCAAA 59.469 55.000 5.55 0.00 0.00 3.28
7974 8771 1.945354 GCTCGATCTGACGGTCCCAA 61.945 60.000 5.55 0.00 0.00 4.12
7975 8772 2.415608 GCTCGATCTGACGGTCCCA 61.416 63.158 5.55 0.00 0.00 4.37
7976 8773 2.413765 GCTCGATCTGACGGTCCC 59.586 66.667 5.55 0.00 0.00 4.46
7977 8774 2.413765 GGCTCGATCTGACGGTCC 59.586 66.667 5.55 0.00 0.00 4.46
7978 8775 2.065906 GAGGGCTCGATCTGACGGTC 62.066 65.000 0.00 0.00 0.00 4.79
7979 8776 2.043852 AGGGCTCGATCTGACGGT 60.044 61.111 0.00 0.00 0.00 4.83
7980 8777 2.069465 CTGAGGGCTCGATCTGACGG 62.069 65.000 0.00 0.00 0.00 4.79
7981 8778 1.358402 CTGAGGGCTCGATCTGACG 59.642 63.158 0.00 0.00 0.00 4.35
7982 8779 1.739049 CCTGAGGGCTCGATCTGAC 59.261 63.158 0.00 0.00 0.00 3.51
7983 8780 4.266962 CCTGAGGGCTCGATCTGA 57.733 61.111 0.00 0.00 0.00 3.27
8005 8802 4.794648 TTCAATCCGGCGGCTGGG 62.795 66.667 26.86 15.33 0.00 4.45
8006 8803 3.508840 GTTCAATCCGGCGGCTGG 61.509 66.667 23.83 22.11 0.00 4.85
8007 8804 2.436646 AGTTCAATCCGGCGGCTG 60.437 61.111 23.83 20.57 0.00 4.85
8008 8805 2.436646 CAGTTCAATCCGGCGGCT 60.437 61.111 23.83 9.44 0.00 5.52
8009 8806 1.582610 TTTCAGTTCAATCCGGCGGC 61.583 55.000 23.83 5.87 0.00 6.53
8010 8807 0.878416 TTTTCAGTTCAATCCGGCGG 59.122 50.000 22.51 22.51 0.00 6.13
8011 8808 1.265635 TGTTTTCAGTTCAATCCGGCG 59.734 47.619 0.00 0.00 0.00 6.46
8012 8809 2.661594 GTGTTTTCAGTTCAATCCGGC 58.338 47.619 0.00 0.00 0.00 6.13
8013 8810 2.350388 CCGTGTTTTCAGTTCAATCCGG 60.350 50.000 0.00 0.00 0.00 5.14
8014 8811 2.289547 ACCGTGTTTTCAGTTCAATCCG 59.710 45.455 0.00 0.00 0.00 4.18
8015 8812 3.982576 ACCGTGTTTTCAGTTCAATCC 57.017 42.857 0.00 0.00 0.00 3.01
8016 8813 3.485743 GCAACCGTGTTTTCAGTTCAATC 59.514 43.478 0.00 0.00 0.00 2.67
8017 8814 3.119316 TGCAACCGTGTTTTCAGTTCAAT 60.119 39.130 0.00 0.00 0.00 2.57
8018 8815 2.229062 TGCAACCGTGTTTTCAGTTCAA 59.771 40.909 0.00 0.00 0.00 2.69
8019 8816 1.813178 TGCAACCGTGTTTTCAGTTCA 59.187 42.857 0.00 0.00 0.00 3.18
8020 8817 2.553079 TGCAACCGTGTTTTCAGTTC 57.447 45.000 0.00 0.00 0.00 3.01
8021 8818 3.119316 TCATTGCAACCGTGTTTTCAGTT 60.119 39.130 0.00 0.00 0.00 3.16
8022 8819 2.425312 TCATTGCAACCGTGTTTTCAGT 59.575 40.909 0.00 0.00 0.00 3.41
8023 8820 3.077229 TCATTGCAACCGTGTTTTCAG 57.923 42.857 0.00 0.00 0.00 3.02
8024 8821 3.510388 TTCATTGCAACCGTGTTTTCA 57.490 38.095 0.00 0.00 0.00 2.69
8025 8822 5.219633 ACTATTCATTGCAACCGTGTTTTC 58.780 37.500 0.00 0.00 0.00 2.29
8026 8823 5.195001 ACTATTCATTGCAACCGTGTTTT 57.805 34.783 0.00 0.00 0.00 2.43
8027 8824 4.846779 ACTATTCATTGCAACCGTGTTT 57.153 36.364 0.00 0.00 0.00 2.83
8028 8825 4.846779 AACTATTCATTGCAACCGTGTT 57.153 36.364 0.00 0.00 0.00 3.32
8029 8826 4.545610 CAAACTATTCATTGCAACCGTGT 58.454 39.130 0.00 0.00 0.00 4.49
8038 8835 4.159135 AGCTGGGAAGCAAACTATTCATTG 59.841 41.667 0.00 0.00 37.25 2.82
8039 8836 4.347607 AGCTGGGAAGCAAACTATTCATT 58.652 39.130 0.00 0.00 37.25 2.57
8040 8837 3.973425 AGCTGGGAAGCAAACTATTCAT 58.027 40.909 0.00 0.00 37.25 2.57
8041 8838 3.439857 AGCTGGGAAGCAAACTATTCA 57.560 42.857 0.00 0.00 37.25 2.57
8042 8839 5.897377 TTTAGCTGGGAAGCAAACTATTC 57.103 39.130 0.00 0.00 37.25 1.75
8043 8840 6.857437 ATTTTAGCTGGGAAGCAAACTATT 57.143 33.333 0.00 0.00 37.25 1.73
8044 8841 8.001292 AGATATTTTAGCTGGGAAGCAAACTAT 58.999 33.333 0.00 3.80 37.25 2.12
8045 8842 7.346471 AGATATTTTAGCTGGGAAGCAAACTA 58.654 34.615 0.00 0.00 37.25 2.24
8046 8843 6.190587 AGATATTTTAGCTGGGAAGCAAACT 58.809 36.000 0.00 0.00 37.25 2.66
8047 8844 6.456795 AGATATTTTAGCTGGGAAGCAAAC 57.543 37.500 0.00 0.00 37.25 2.93
8048 8845 6.437162 ACAAGATATTTTAGCTGGGAAGCAAA 59.563 34.615 0.00 0.00 37.25 3.68
8049 8846 5.951747 ACAAGATATTTTAGCTGGGAAGCAA 59.048 36.000 0.00 0.00 37.25 3.91
8050 8847 5.509498 ACAAGATATTTTAGCTGGGAAGCA 58.491 37.500 0.00 0.00 37.25 3.91
8051 8848 6.456795 AACAAGATATTTTAGCTGGGAAGC 57.543 37.500 0.00 0.00 0.00 3.86
8052 8849 6.603201 TGGAACAAGATATTTTAGCTGGGAAG 59.397 38.462 0.00 0.00 31.92 3.46
8053 8850 6.377146 GTGGAACAAGATATTTTAGCTGGGAA 59.623 38.462 0.00 0.00 44.16 3.97
8054 8851 5.885912 GTGGAACAAGATATTTTAGCTGGGA 59.114 40.000 0.00 0.00 44.16 4.37
8055 8852 5.067805 GGTGGAACAAGATATTTTAGCTGGG 59.932 44.000 0.00 0.00 44.16 4.45
8056 8853 5.220854 CGGTGGAACAAGATATTTTAGCTGG 60.221 44.000 0.00 0.00 44.16 4.85
8057 8854 5.730568 GCGGTGGAACAAGATATTTTAGCTG 60.731 44.000 0.00 0.00 44.16 4.24
8058 8855 4.335594 GCGGTGGAACAAGATATTTTAGCT 59.664 41.667 0.00 0.00 44.16 3.32
8059 8856 4.497507 GGCGGTGGAACAAGATATTTTAGC 60.498 45.833 0.00 0.00 44.16 3.09
8060 8857 4.260620 CGGCGGTGGAACAAGATATTTTAG 60.261 45.833 0.00 0.00 44.16 1.85
8061 8858 3.623960 CGGCGGTGGAACAAGATATTTTA 59.376 43.478 0.00 0.00 44.16 1.52
8062 8859 2.422127 CGGCGGTGGAACAAGATATTTT 59.578 45.455 0.00 0.00 44.16 1.82
8063 8860 2.014128 CGGCGGTGGAACAAGATATTT 58.986 47.619 0.00 0.00 44.16 1.40
8064 8861 1.065709 ACGGCGGTGGAACAAGATATT 60.066 47.619 13.24 0.00 44.16 1.28
8065 8862 0.539986 ACGGCGGTGGAACAAGATAT 59.460 50.000 13.24 0.00 44.16 1.63
8066 8863 0.322322 AACGGCGGTGGAACAAGATA 59.678 50.000 13.24 0.00 44.16 1.98
8067 8864 0.322322 TAACGGCGGTGGAACAAGAT 59.678 50.000 8.19 0.00 44.16 2.40
8068 8865 0.322322 ATAACGGCGGTGGAACAAGA 59.678 50.000 8.19 0.00 44.16 3.02
8069 8866 1.161843 AATAACGGCGGTGGAACAAG 58.838 50.000 8.19 0.00 44.16 3.16
8070 8867 2.075338 GTAATAACGGCGGTGGAACAA 58.925 47.619 8.19 0.00 44.16 2.83
8071 8868 1.724429 GTAATAACGGCGGTGGAACA 58.276 50.000 8.19 0.00 39.98 3.18
8072 8869 0.646895 CGTAATAACGGCGGTGGAAC 59.353 55.000 8.19 0.94 45.50 3.62
8073 8870 3.047752 CGTAATAACGGCGGTGGAA 57.952 52.632 8.19 0.00 45.50 3.53
8074 8871 4.810730 CGTAATAACGGCGGTGGA 57.189 55.556 8.19 0.00 45.50 4.02
8099 8896 1.792118 AAGACGAAAACGCCCTTGGC 61.792 55.000 0.00 0.00 46.75 4.52
8100 8897 0.666374 AAAGACGAAAACGCCCTTGG 59.334 50.000 0.00 0.00 0.00 3.61
8101 8898 2.223386 TGAAAAGACGAAAACGCCCTTG 60.223 45.455 0.00 0.00 0.00 3.61
8102 8899 2.018515 TGAAAAGACGAAAACGCCCTT 58.981 42.857 0.00 0.00 0.00 3.95
8103 8900 1.332686 GTGAAAAGACGAAAACGCCCT 59.667 47.619 0.00 0.00 0.00 5.19
8104 8901 1.064357 TGTGAAAAGACGAAAACGCCC 59.936 47.619 0.00 0.00 0.00 6.13
8105 8902 2.461897 TGTGAAAAGACGAAAACGCC 57.538 45.000 0.00 0.00 0.00 5.68
8106 8903 3.359654 ACATGTGAAAAGACGAAAACGC 58.640 40.909 0.00 0.00 0.00 4.84
8107 8904 4.204168 CCAACATGTGAAAAGACGAAAACG 59.796 41.667 0.00 0.00 0.00 3.60
8108 8905 4.026886 GCCAACATGTGAAAAGACGAAAAC 60.027 41.667 0.00 0.00 0.00 2.43
8109 8906 4.109050 GCCAACATGTGAAAAGACGAAAA 58.891 39.130 0.00 0.00 0.00 2.29
8110 8907 3.490078 GGCCAACATGTGAAAAGACGAAA 60.490 43.478 0.00 0.00 0.00 3.46
8111 8908 2.034053 GGCCAACATGTGAAAAGACGAA 59.966 45.455 0.00 0.00 0.00 3.85
8112 8909 1.606668 GGCCAACATGTGAAAAGACGA 59.393 47.619 0.00 0.00 0.00 4.20
8113 8910 1.335872 GGGCCAACATGTGAAAAGACG 60.336 52.381 4.39 0.00 0.00 4.18
8114 8911 1.686052 TGGGCCAACATGTGAAAAGAC 59.314 47.619 2.13 0.00 0.00 3.01
8115 8912 2.079170 TGGGCCAACATGTGAAAAGA 57.921 45.000 2.13 0.00 0.00 2.52
8116 8913 2.299582 TCATGGGCCAACATGTGAAAAG 59.700 45.455 11.89 0.00 46.39 2.27
8117 8914 2.036992 GTCATGGGCCAACATGTGAAAA 59.963 45.455 11.89 0.35 46.39 2.29
8118 8915 1.617850 GTCATGGGCCAACATGTGAAA 59.382 47.619 11.89 0.67 46.39 2.69
8119 8916 1.255882 GTCATGGGCCAACATGTGAA 58.744 50.000 11.89 0.98 46.39 3.18
8120 8917 0.959867 CGTCATGGGCCAACATGTGA 60.960 55.000 11.89 6.47 46.39 3.58
8121 8918 1.507630 CGTCATGGGCCAACATGTG 59.492 57.895 11.89 3.49 46.39 3.21
8122 8919 2.342650 GCGTCATGGGCCAACATGT 61.343 57.895 11.89 0.00 46.39 3.21
8124 8921 3.133464 CGCGTCATGGGCCAACAT 61.133 61.111 11.89 0.00 0.00 2.71
8125 8922 4.634703 ACGCGTCATGGGCCAACA 62.635 61.111 11.89 0.00 0.00 3.33
8126 8923 3.361977 AACGCGTCATGGGCCAAC 61.362 61.111 14.44 3.81 0.00 3.77
8127 8924 3.361158 CAACGCGTCATGGGCCAA 61.361 61.111 14.44 0.00 0.00 4.52
8128 8925 3.620419 ATCAACGCGTCATGGGCCA 62.620 57.895 14.44 9.61 0.00 5.36
8129 8926 2.823829 GATCAACGCGTCATGGGCC 61.824 63.158 14.44 0.00 0.00 5.80
8130 8927 2.709475 GATCAACGCGTCATGGGC 59.291 61.111 14.44 0.00 0.00 5.36
8131 8928 2.180204 GGGATCAACGCGTCATGGG 61.180 63.158 14.44 0.00 0.00 4.00
8132 8929 1.153369 AGGGATCAACGCGTCATGG 60.153 57.895 14.44 2.63 36.53 3.66
8133 8930 1.431488 CCAGGGATCAACGCGTCATG 61.431 60.000 14.44 8.74 36.53 3.07
8134 8931 1.153369 CCAGGGATCAACGCGTCAT 60.153 57.895 14.44 7.96 36.53 3.06
8135 8932 2.107041 AACCAGGGATCAACGCGTCA 62.107 55.000 14.44 1.83 36.53 4.35
8136 8933 1.375523 AACCAGGGATCAACGCGTC 60.376 57.895 14.44 0.00 36.53 5.19
8137 8934 1.671054 CAACCAGGGATCAACGCGT 60.671 57.895 5.58 5.58 36.53 6.01
8138 8935 2.398554 CCAACCAGGGATCAACGCG 61.399 63.158 3.53 3.53 36.53 6.01
8139 8936 2.700773 GCCAACCAGGGATCAACGC 61.701 63.158 0.00 0.00 38.09 4.84
8140 8937 2.046285 GGCCAACCAGGGATCAACG 61.046 63.158 0.00 0.00 38.09 4.10
8141 8938 1.682344 GGGCCAACCAGGGATCAAC 60.682 63.158 4.39 0.00 39.85 3.18
8142 8939 2.770130 GGGCCAACCAGGGATCAA 59.230 61.111 4.39 0.00 39.85 2.57
8143 8940 3.727258 CGGGCCAACCAGGGATCA 61.727 66.667 4.39 0.00 40.22 2.92
8144 8941 3.699134 GACGGGCCAACCAGGGATC 62.699 68.421 4.39 0.00 40.22 3.36
8145 8942 3.728373 GACGGGCCAACCAGGGAT 61.728 66.667 4.39 0.00 40.22 3.85
8147 8944 3.583882 ATTGACGGGCCAACCAGGG 62.584 63.158 4.39 0.00 40.22 4.45
8148 8945 2.035626 ATTGACGGGCCAACCAGG 59.964 61.111 4.39 0.00 40.22 4.45
8149 8946 2.342650 CCATTGACGGGCCAACCAG 61.343 63.158 4.39 0.00 40.22 4.00
8150 8947 2.148723 ATCCATTGACGGGCCAACCA 62.149 55.000 4.39 0.00 40.22 3.67
8151 8948 1.379843 ATCCATTGACGGGCCAACC 60.380 57.895 4.39 0.00 0.00 3.77
8152 8949 0.679640 TCATCCATTGACGGGCCAAC 60.680 55.000 4.39 0.00 0.00 3.77
8153 8950 0.394216 CTCATCCATTGACGGGCCAA 60.394 55.000 4.39 0.00 0.00 4.52
8154 8951 1.224315 CTCATCCATTGACGGGCCA 59.776 57.895 4.39 0.00 0.00 5.36
8155 8952 0.815615 GTCTCATCCATTGACGGGCC 60.816 60.000 0.00 0.00 0.00 5.80
8156 8953 1.154205 CGTCTCATCCATTGACGGGC 61.154 60.000 6.83 0.00 46.45 6.13
8157 8954 2.977700 CGTCTCATCCATTGACGGG 58.022 57.895 6.83 0.00 46.45 5.28
8160 8957 1.757118 TCCCTCGTCTCATCCATTGAC 59.243 52.381 0.00 0.00 0.00 3.18
8161 8958 2.034878 CTCCCTCGTCTCATCCATTGA 58.965 52.381 0.00 0.00 0.00 2.57
8162 8959 1.069823 CCTCCCTCGTCTCATCCATTG 59.930 57.143 0.00 0.00 0.00 2.82
8163 8960 1.418334 CCTCCCTCGTCTCATCCATT 58.582 55.000 0.00 0.00 0.00 3.16
8164 8961 0.470833 CCCTCCCTCGTCTCATCCAT 60.471 60.000 0.00 0.00 0.00 3.41
8165 8962 1.075970 CCCTCCCTCGTCTCATCCA 60.076 63.158 0.00 0.00 0.00 3.41
8166 8963 2.503382 GCCCTCCCTCGTCTCATCC 61.503 68.421 0.00 0.00 0.00 3.51
8167 8964 2.851071 CGCCCTCCCTCGTCTCATC 61.851 68.421 0.00 0.00 0.00 2.92
8168 8965 2.835431 CGCCCTCCCTCGTCTCAT 60.835 66.667 0.00 0.00 0.00 2.90
8169 8966 4.361971 ACGCCCTCCCTCGTCTCA 62.362 66.667 0.00 0.00 33.09 3.27
8184 8981 2.202676 GAAGAGGCGAGGCAGACG 60.203 66.667 0.00 0.00 0.00 4.18
8185 8982 2.202676 CGAAGAGGCGAGGCAGAC 60.203 66.667 0.00 0.00 0.00 3.51
8186 8983 2.676822 ACGAAGAGGCGAGGCAGA 60.677 61.111 0.00 0.00 34.83 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.