Multiple sequence alignment - TraesCS4D01G050600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G050600 chr4D 100.000 3443 0 0 1 3443 26479008 26482450 0.000000e+00 6359.0
1 TraesCS4D01G050600 chr4D 81.641 1438 256 7 997 2430 94592339 94593772 0.000000e+00 1186.0
2 TraesCS4D01G050600 chr4D 96.364 55 2 0 2720 2774 123624959 123624905 1.320000e-14 91.6
3 TraesCS4D01G050600 chr4A 95.228 2724 103 14 1 2710 576932963 576930253 0.000000e+00 4285.0
4 TraesCS4D01G050600 chr4A 81.831 1442 252 9 997 2433 486126018 486124582 0.000000e+00 1203.0
5 TraesCS4D01G050600 chr4B 94.551 2716 105 11 1 2710 39013890 39016568 0.000000e+00 4156.0
6 TraesCS4D01G050600 chr4B 81.711 1438 255 7 997 2430 133853136 133854569 0.000000e+00 1192.0
7 TraesCS4D01G050600 chr4B 81.387 1456 252 15 995 2441 73609981 73608536 0.000000e+00 1170.0
8 TraesCS4D01G050600 chr4B 95.833 96 3 1 2768 2862 629939745 629939840 1.650000e-33 154.0
9 TraesCS4D01G050600 chr4B 93.137 102 7 0 2772 2873 538950480 538950581 2.140000e-32 150.0
10 TraesCS4D01G050600 chr4B 96.364 55 2 0 2720 2774 209171087 209171033 1.320000e-14 91.6
11 TraesCS4D01G050600 chr5B 90.849 1508 129 7 946 2446 577227179 577228684 0.000000e+00 2012.0
12 TraesCS4D01G050600 chr5D 90.614 1481 135 3 975 2452 469501768 469503247 0.000000e+00 1962.0
13 TraesCS4D01G050600 chr5A 89.987 1508 142 7 946 2446 590539984 590541489 0.000000e+00 1940.0
14 TraesCS4D01G050600 chr5A 86.675 788 58 19 250 1030 500583535 500582788 0.000000e+00 830.0
15 TraesCS4D01G050600 chr5A 93.137 102 5 2 2771 2870 547393327 547393428 7.700000e-32 148.0
16 TraesCS4D01G050600 chr5A 91.667 108 8 1 2753 2859 622194397 622194504 7.700000e-32 148.0
17 TraesCS4D01G050600 chr5A 91.667 108 6 3 2754 2859 677160955 677160849 2.770000e-31 147.0
18 TraesCS4D01G050600 chr2A 87.472 878 63 20 162 1030 732301628 732300789 0.000000e+00 968.0
19 TraesCS4D01G050600 chr2A 87.340 782 53 19 255 1030 777177843 777178584 0.000000e+00 854.0
20 TraesCS4D01G050600 chr2A 86.185 789 61 19 250 1030 39913232 39913980 0.000000e+00 809.0
21 TraesCS4D01G050600 chr2A 85.185 594 46 9 255 846 777209384 777209937 3.850000e-159 571.0
22 TraesCS4D01G050600 chr2A 94.898 98 4 1 2772 2868 628780925 628781022 5.950000e-33 152.0
23 TraesCS4D01G050600 chr2B 86.171 875 76 15 164 1030 506804263 506803426 0.000000e+00 904.0
24 TraesCS4D01G050600 chr2B 93.659 552 32 3 2893 3443 533541468 533540919 0.000000e+00 822.0
25 TraesCS4D01G050600 chr2B 91.382 557 43 5 2889 3443 790326223 790325670 0.000000e+00 758.0
26 TraesCS4D01G050600 chrUn 94.492 581 27 4 2864 3443 1604319 1603743 0.000000e+00 891.0
27 TraesCS4D01G050600 chr1D 94.320 581 29 4 2864 3443 83718022 83718599 0.000000e+00 887.0
28 TraesCS4D01G050600 chr7A 93.287 581 36 3 2864 3443 510492802 510492224 0.000000e+00 854.0
29 TraesCS4D01G050600 chr7A 93.229 576 37 2 2869 3443 91858848 91858274 0.000000e+00 846.0
30 TraesCS4D01G050600 chr7B 86.802 788 57 19 250 1030 595213605 595212858 0.000000e+00 835.0
31 TraesCS4D01G050600 chr7B 92.746 579 39 3 2866 3443 470853725 470854301 0.000000e+00 833.0
32 TraesCS4D01G050600 chr1A 92.388 578 40 3 2869 3443 375329002 375329578 0.000000e+00 821.0
33 TraesCS4D01G050600 chr1A 85.805 789 64 20 250 1030 10728229 10727481 0.000000e+00 793.0
34 TraesCS4D01G050600 chr1A 95.789 95 4 0 2764 2858 286008401 286008307 1.650000e-33 154.0
35 TraesCS4D01G050600 chr3A 86.294 788 61 19 250 1030 603855941 603855194 0.000000e+00 813.0
36 TraesCS4D01G050600 chr3D 95.411 414 16 2 3031 3443 614988061 614988472 0.000000e+00 656.0
37 TraesCS4D01G050600 chr3D 96.364 55 2 0 2720 2774 154709936 154709882 1.320000e-14 91.6
38 TraesCS4D01G050600 chr3D 96.364 55 2 0 2720 2774 213382846 213382792 1.320000e-14 91.6
39 TraesCS4D01G050600 chr3D 96.364 55 2 0 2720 2774 344045052 344044998 1.320000e-14 91.6
40 TraesCS4D01G050600 chr3D 96.364 55 2 0 2720 2774 358755064 358755010 1.320000e-14 91.6
41 TraesCS4D01G050600 chr6D 92.308 442 30 4 2898 3339 28744625 28745062 2.920000e-175 625.0
42 TraesCS4D01G050600 chr2D 94.898 98 4 1 2772 2869 394531915 394532011 5.950000e-33 152.0
43 TraesCS4D01G050600 chr6B 86.923 130 10 6 2732 2857 657255908 657255782 4.630000e-29 139.0
44 TraesCS4D01G050600 chr1B 96.364 55 2 0 2720 2774 583522285 583522231 1.320000e-14 91.6
45 TraesCS4D01G050600 chr1B 96.364 55 2 0 2720 2774 683719657 683719603 1.320000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G050600 chr4D 26479008 26482450 3442 False 6359 6359 100.000 1 3443 1 chr4D.!!$F1 3442
1 TraesCS4D01G050600 chr4D 94592339 94593772 1433 False 1186 1186 81.641 997 2430 1 chr4D.!!$F2 1433
2 TraesCS4D01G050600 chr4A 576930253 576932963 2710 True 4285 4285 95.228 1 2710 1 chr4A.!!$R2 2709
3 TraesCS4D01G050600 chr4A 486124582 486126018 1436 True 1203 1203 81.831 997 2433 1 chr4A.!!$R1 1436
4 TraesCS4D01G050600 chr4B 39013890 39016568 2678 False 4156 4156 94.551 1 2710 1 chr4B.!!$F1 2709
5 TraesCS4D01G050600 chr4B 133853136 133854569 1433 False 1192 1192 81.711 997 2430 1 chr4B.!!$F2 1433
6 TraesCS4D01G050600 chr4B 73608536 73609981 1445 True 1170 1170 81.387 995 2441 1 chr4B.!!$R1 1446
7 TraesCS4D01G050600 chr5B 577227179 577228684 1505 False 2012 2012 90.849 946 2446 1 chr5B.!!$F1 1500
8 TraesCS4D01G050600 chr5D 469501768 469503247 1479 False 1962 1962 90.614 975 2452 1 chr5D.!!$F1 1477
9 TraesCS4D01G050600 chr5A 590539984 590541489 1505 False 1940 1940 89.987 946 2446 1 chr5A.!!$F2 1500
10 TraesCS4D01G050600 chr5A 500582788 500583535 747 True 830 830 86.675 250 1030 1 chr5A.!!$R1 780
11 TraesCS4D01G050600 chr2A 732300789 732301628 839 True 968 968 87.472 162 1030 1 chr2A.!!$R1 868
12 TraesCS4D01G050600 chr2A 777177843 777178584 741 False 854 854 87.340 255 1030 1 chr2A.!!$F3 775
13 TraesCS4D01G050600 chr2A 39913232 39913980 748 False 809 809 86.185 250 1030 1 chr2A.!!$F1 780
14 TraesCS4D01G050600 chr2A 777209384 777209937 553 False 571 571 85.185 255 846 1 chr2A.!!$F4 591
15 TraesCS4D01G050600 chr2B 506803426 506804263 837 True 904 904 86.171 164 1030 1 chr2B.!!$R1 866
16 TraesCS4D01G050600 chr2B 533540919 533541468 549 True 822 822 93.659 2893 3443 1 chr2B.!!$R2 550
17 TraesCS4D01G050600 chr2B 790325670 790326223 553 True 758 758 91.382 2889 3443 1 chr2B.!!$R3 554
18 TraesCS4D01G050600 chrUn 1603743 1604319 576 True 891 891 94.492 2864 3443 1 chrUn.!!$R1 579
19 TraesCS4D01G050600 chr1D 83718022 83718599 577 False 887 887 94.320 2864 3443 1 chr1D.!!$F1 579
20 TraesCS4D01G050600 chr7A 510492224 510492802 578 True 854 854 93.287 2864 3443 1 chr7A.!!$R2 579
21 TraesCS4D01G050600 chr7A 91858274 91858848 574 True 846 846 93.229 2869 3443 1 chr7A.!!$R1 574
22 TraesCS4D01G050600 chr7B 595212858 595213605 747 True 835 835 86.802 250 1030 1 chr7B.!!$R1 780
23 TraesCS4D01G050600 chr7B 470853725 470854301 576 False 833 833 92.746 2866 3443 1 chr7B.!!$F1 577
24 TraesCS4D01G050600 chr1A 375329002 375329578 576 False 821 821 92.388 2869 3443 1 chr1A.!!$F1 574
25 TraesCS4D01G050600 chr1A 10727481 10728229 748 True 793 793 85.805 250 1030 1 chr1A.!!$R1 780
26 TraesCS4D01G050600 chr3A 603855194 603855941 747 True 813 813 86.294 250 1030 1 chr3A.!!$R1 780

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
65 66 0.251341 ATCGGAGCACTTTGCCCTTT 60.251 50.000 0.0 0.0 46.52 3.11 F
67 68 1.005748 GGAGCACTTTGCCCTTTGC 60.006 57.895 0.0 0.0 46.52 3.68 F
68 69 1.005748 GAGCACTTTGCCCTTTGCC 60.006 57.895 0.0 0.0 46.52 4.52 F
201 207 1.192146 GGGCAGTGTGGAGAGTGGTA 61.192 60.000 0.0 0.0 0.00 3.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1501 1527 2.564771 CACTCTGTCAGGCTTGAACAA 58.435 47.619 0.00 0.0 34.49 2.83 R
2046 2072 4.772231 CCCAGCAGGCCCTTGCAT 62.772 66.667 18.35 2.0 46.47 3.96 R
2190 2216 2.281070 ACCACGCTCACCTGCTTG 60.281 61.111 0.00 0.0 32.88 4.01 R
2466 2492 5.528870 CCTCCGCAAAAGTTTGTAGAATTT 58.471 37.500 5.71 0.0 40.24 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 3.056313 GCATCGGAGCACTTTGCCC 62.056 63.158 0.00 0.00 46.52 5.36
63 64 1.377725 CATCGGAGCACTTTGCCCT 60.378 57.895 0.00 0.00 46.52 5.19
64 65 0.962356 CATCGGAGCACTTTGCCCTT 60.962 55.000 0.00 0.00 46.52 3.95
65 66 0.251341 ATCGGAGCACTTTGCCCTTT 60.251 50.000 0.00 0.00 46.52 3.11
66 67 1.172180 TCGGAGCACTTTGCCCTTTG 61.172 55.000 0.00 0.00 46.52 2.77
67 68 1.005748 GGAGCACTTTGCCCTTTGC 60.006 57.895 0.00 0.00 46.52 3.68
68 69 1.005748 GAGCACTTTGCCCTTTGCC 60.006 57.895 0.00 0.00 46.52 4.52
101 102 3.243907 ACAAACACCTGCTAGTCTGTCTC 60.244 47.826 0.00 0.00 0.00 3.36
113 114 6.154192 TGCTAGTCTGTCTCTCATGATTTCTT 59.846 38.462 0.00 0.00 0.00 2.52
200 206 2.520536 GGGCAGTGTGGAGAGTGGT 61.521 63.158 0.00 0.00 0.00 4.16
201 207 1.192146 GGGCAGTGTGGAGAGTGGTA 61.192 60.000 0.00 0.00 0.00 3.25
353 360 7.767198 CCTGATCCATGCATCAATTTTTACTTT 59.233 33.333 0.03 0.00 32.24 2.66
355 362 6.724694 TCCATGCATCAATTTTTACTTTGC 57.275 33.333 0.00 0.00 0.00 3.68
380 387 4.762251 TGTAGTCTGGTATCTCATCCATCG 59.238 45.833 0.00 0.00 33.01 3.84
389 396 6.548251 TGGTATCTCATCCATCGTGTAAGTAA 59.452 38.462 0.00 0.00 0.00 2.24
441 448 8.689251 TCTCATGTTTTCTGAAGATACTTACG 57.311 34.615 0.00 0.00 0.00 3.18
489 496 3.317430 GGATCCATTGACTTTGCTGATCC 59.683 47.826 6.95 0.00 39.81 3.36
515 523 4.519540 CTGGTTTGATTTGGTAACCTGG 57.480 45.455 0.00 0.00 41.47 4.45
597 605 7.716612 ACCTTTCTTTTTACTGATTGTTCCTG 58.283 34.615 0.00 0.00 0.00 3.86
646 655 8.948631 TGTGATATTCTTCAGTCTGTATTTCC 57.051 34.615 0.00 0.00 0.00 3.13
658 667 4.947388 GTCTGTATTTCCCCTTACATGCAA 59.053 41.667 0.00 0.00 0.00 4.08
667 676 6.204852 TCCCCTTACATGCAATAGATCATT 57.795 37.500 0.00 0.00 0.00 2.57
727 737 8.428852 AGTTTATTTTACTTTTGCCACCTCAAT 58.571 29.630 0.00 0.00 0.00 2.57
729 739 8.825667 TTATTTTACTTTTGCCACCTCAATTC 57.174 30.769 0.00 0.00 0.00 2.17
774 784 8.125448 GCCAATATCTGACTGTTTACTGAATTC 58.875 37.037 0.00 0.00 0.00 2.17
838 848 2.096248 GTGTCAACCCTTTTCCACACA 58.904 47.619 0.00 0.00 35.31 3.72
840 850 3.056465 GTGTCAACCCTTTTCCACACAAA 60.056 43.478 0.00 0.00 35.31 2.83
1179 1205 1.826709 TGACGAGGTTGTCAAGGCA 59.173 52.632 0.00 0.00 45.40 4.75
1314 1340 2.435693 GGCTGCCGACCTCACCTAT 61.436 63.158 1.35 0.00 0.00 2.57
1501 1527 2.491022 GGCACGGCTATCGAGGACT 61.491 63.158 0.00 0.00 42.43 3.85
1533 1559 1.204941 GACAGAGTGCTTATCGGTGGT 59.795 52.381 0.00 0.00 0.00 4.16
2235 2261 3.006728 TACGAGGCCACCAAGGGG 61.007 66.667 5.01 0.00 38.09 4.79
2472 2498 0.393537 CAGGAGCTGCGGGAAATTCT 60.394 55.000 0.00 0.00 0.00 2.40
2659 2687 7.879070 TCCAATGAGCTTATAGCAATTTGATC 58.121 34.615 0.00 0.00 45.56 2.92
2665 2693 7.503230 TGAGCTTATAGCAATTTGATCATTCCA 59.497 33.333 0.00 0.00 45.56 3.53
2666 2694 8.418597 AGCTTATAGCAATTTGATCATTCCAT 57.581 30.769 0.00 0.00 45.56 3.41
2667 2695 8.867097 AGCTTATAGCAATTTGATCATTCCATT 58.133 29.630 0.00 0.00 45.56 3.16
2668 2696 9.485206 GCTTATAGCAATTTGATCATTCCATTT 57.515 29.630 0.00 0.00 41.89 2.32
2675 2703 9.337091 GCAATTTGATCATTCCATTTCTTTTTG 57.663 29.630 0.00 0.00 0.00 2.44
2684 2715 9.541143 TCATTCCATTTCTTTTTGTCCTAAAAC 57.459 29.630 0.00 0.00 0.00 2.43
2688 2719 9.148879 TCCATTTCTTTTTGTCCTAAAACCATA 57.851 29.630 0.00 0.00 0.00 2.74
2693 2724 8.754991 TCTTTTTGTCCTAAAACCATAACAGA 57.245 30.769 0.00 0.00 0.00 3.41
2694 2725 8.846211 TCTTTTTGTCCTAAAACCATAACAGAG 58.154 33.333 0.00 0.00 0.00 3.35
2696 2727 8.528044 TTTTGTCCTAAAACCATAACAGAGTT 57.472 30.769 0.00 0.00 0.00 3.01
2697 2728 7.504924 TTGTCCTAAAACCATAACAGAGTTG 57.495 36.000 0.00 0.00 0.00 3.16
2701 2732 6.374333 TCCTAAAACCATAACAGAGTTGATGC 59.626 38.462 0.00 0.00 0.00 3.91
2710 2741 3.568538 ACAGAGTTGATGCATTTTTCGC 58.431 40.909 0.00 0.00 0.00 4.70
2711 2742 3.004629 ACAGAGTTGATGCATTTTTCGCA 59.995 39.130 0.00 0.00 44.94 5.10
2712 2743 3.982701 CAGAGTTGATGCATTTTTCGCAA 59.017 39.130 0.00 0.00 43.84 4.85
2713 2744 4.445052 CAGAGTTGATGCATTTTTCGCAAA 59.555 37.500 0.00 0.00 43.84 3.68
2714 2745 4.445385 AGAGTTGATGCATTTTTCGCAAAC 59.555 37.500 0.00 0.00 43.84 2.93
2715 2746 4.118410 AGTTGATGCATTTTTCGCAAACA 58.882 34.783 0.00 0.00 43.84 2.83
2716 2747 4.209703 AGTTGATGCATTTTTCGCAAACAG 59.790 37.500 0.00 0.00 43.84 3.16
2717 2748 3.974912 TGATGCATTTTTCGCAAACAGA 58.025 36.364 0.00 0.00 43.84 3.41
2718 2749 4.366586 TGATGCATTTTTCGCAAACAGAA 58.633 34.783 0.00 0.00 43.84 3.02
2719 2750 4.445052 TGATGCATTTTTCGCAAACAGAAG 59.555 37.500 0.00 0.00 43.84 2.85
2720 2751 4.039151 TGCATTTTTCGCAAACAGAAGA 57.961 36.364 0.00 0.00 36.17 2.87
2721 2752 3.796178 TGCATTTTTCGCAAACAGAAGAC 59.204 39.130 0.00 0.00 36.17 3.01
2722 2753 3.796178 GCATTTTTCGCAAACAGAAGACA 59.204 39.130 0.00 0.00 0.00 3.41
2723 2754 4.317348 GCATTTTTCGCAAACAGAAGACAC 60.317 41.667 0.00 0.00 0.00 3.67
2724 2755 4.695217 TTTTTCGCAAACAGAAGACACT 57.305 36.364 0.00 0.00 0.00 3.55
2725 2756 3.944422 TTTCGCAAACAGAAGACACTC 57.056 42.857 0.00 0.00 0.00 3.51
2726 2757 2.890808 TCGCAAACAGAAGACACTCT 57.109 45.000 0.00 0.00 0.00 3.24
2727 2758 4.316205 TTCGCAAACAGAAGACACTCTA 57.684 40.909 0.00 0.00 0.00 2.43
2728 2759 4.521130 TCGCAAACAGAAGACACTCTAT 57.479 40.909 0.00 0.00 0.00 1.98
2729 2760 4.486090 TCGCAAACAGAAGACACTCTATC 58.514 43.478 0.00 0.00 0.00 2.08
2730 2761 4.218635 TCGCAAACAGAAGACACTCTATCT 59.781 41.667 0.00 0.00 0.00 1.98
2731 2762 4.926238 CGCAAACAGAAGACACTCTATCTT 59.074 41.667 0.00 0.00 39.15 2.40
2738 2769 5.669164 GAAGACACTCTATCTTCTTGGGT 57.331 43.478 7.36 0.00 45.77 4.51
2739 2770 6.777213 GAAGACACTCTATCTTCTTGGGTA 57.223 41.667 7.36 0.00 45.77 3.69
2740 2771 6.783708 AAGACACTCTATCTTCTTGGGTAG 57.216 41.667 0.00 0.00 30.33 3.18
2741 2772 6.080969 AGACACTCTATCTTCTTGGGTAGA 57.919 41.667 0.00 0.00 0.00 2.59
2742 2773 6.678547 AGACACTCTATCTTCTTGGGTAGAT 58.321 40.000 0.00 0.00 34.67 1.98
2743 2774 7.129425 AGACACTCTATCTTCTTGGGTAGATT 58.871 38.462 0.00 0.00 32.95 2.40
2744 2775 7.286775 AGACACTCTATCTTCTTGGGTAGATTC 59.713 40.741 0.00 0.00 32.95 2.52
2745 2776 7.129425 ACACTCTATCTTCTTGGGTAGATTCT 58.871 38.462 0.00 0.00 32.95 2.40
2746 2777 8.282982 ACACTCTATCTTCTTGGGTAGATTCTA 58.717 37.037 0.00 0.00 32.95 2.10
2747 2778 8.792633 CACTCTATCTTCTTGGGTAGATTCTAG 58.207 40.741 0.00 0.00 32.95 2.43
2748 2779 8.729047 ACTCTATCTTCTTGGGTAGATTCTAGA 58.271 37.037 0.00 0.00 32.95 2.43
2749 2780 9.753674 CTCTATCTTCTTGGGTAGATTCTAGAT 57.246 37.037 0.00 0.00 33.43 1.98
2750 2781 9.747898 TCTATCTTCTTGGGTAGATTCTAGATC 57.252 37.037 0.00 0.00 31.97 2.75
2751 2782 6.885952 TCTTCTTGGGTAGATTCTAGATCG 57.114 41.667 0.00 0.00 31.54 3.69
2752 2783 6.366340 TCTTCTTGGGTAGATTCTAGATCGT 58.634 40.000 0.00 0.00 31.54 3.73
2753 2784 6.487331 TCTTCTTGGGTAGATTCTAGATCGTC 59.513 42.308 0.00 0.00 31.54 4.20
2754 2785 5.942961 TCTTGGGTAGATTCTAGATCGTCT 58.057 41.667 0.00 0.76 0.00 4.18
2755 2786 6.366340 TCTTGGGTAGATTCTAGATCGTCTT 58.634 40.000 7.78 0.00 0.00 3.01
2756 2787 6.834451 TCTTGGGTAGATTCTAGATCGTCTTT 59.166 38.462 7.78 0.00 0.00 2.52
2757 2788 6.636562 TGGGTAGATTCTAGATCGTCTTTC 57.363 41.667 7.78 3.82 0.00 2.62
2758 2789 6.127101 TGGGTAGATTCTAGATCGTCTTTCA 58.873 40.000 7.78 3.58 0.00 2.69
2759 2790 6.778069 TGGGTAGATTCTAGATCGTCTTTCAT 59.222 38.462 7.78 0.00 0.00 2.57
2760 2791 7.287927 TGGGTAGATTCTAGATCGTCTTTCATT 59.712 37.037 7.78 0.00 0.00 2.57
2761 2792 8.145122 GGGTAGATTCTAGATCGTCTTTCATTT 58.855 37.037 7.78 0.00 0.00 2.32
2762 2793 9.535878 GGTAGATTCTAGATCGTCTTTCATTTT 57.464 33.333 7.78 0.00 0.00 1.82
2765 2796 9.442047 AGATTCTAGATCGTCTTTCATTTTGTT 57.558 29.630 0.00 0.00 0.00 2.83
2766 2797 9.483062 GATTCTAGATCGTCTTTCATTTTGTTG 57.517 33.333 0.00 0.00 0.00 3.33
2767 2798 7.364522 TCTAGATCGTCTTTCATTTTGTTGG 57.635 36.000 0.00 0.00 0.00 3.77
2768 2799 6.934645 TCTAGATCGTCTTTCATTTTGTTGGT 59.065 34.615 0.00 0.00 0.00 3.67
2769 2800 5.762045 AGATCGTCTTTCATTTTGTTGGTG 58.238 37.500 0.00 0.00 0.00 4.17
2770 2801 5.530915 AGATCGTCTTTCATTTTGTTGGTGA 59.469 36.000 0.00 0.00 0.00 4.02
2771 2802 5.168526 TCGTCTTTCATTTTGTTGGTGAG 57.831 39.130 0.00 0.00 0.00 3.51
2772 2803 4.638421 TCGTCTTTCATTTTGTTGGTGAGT 59.362 37.500 0.00 0.00 0.00 3.41
2773 2804 5.818336 TCGTCTTTCATTTTGTTGGTGAGTA 59.182 36.000 0.00 0.00 0.00 2.59
2774 2805 5.907391 CGTCTTTCATTTTGTTGGTGAGTAC 59.093 40.000 0.00 0.00 0.00 2.73
2775 2806 6.238374 CGTCTTTCATTTTGTTGGTGAGTACT 60.238 38.462 0.00 0.00 0.00 2.73
2776 2807 7.132863 GTCTTTCATTTTGTTGGTGAGTACTC 58.867 38.462 16.32 16.32 0.00 2.59
2777 2808 6.262273 TCTTTCATTTTGTTGGTGAGTACTCC 59.738 38.462 20.11 11.08 0.00 3.85
2778 2809 4.394729 TCATTTTGTTGGTGAGTACTCCC 58.605 43.478 20.11 19.17 0.00 4.30
2779 2810 4.104102 TCATTTTGTTGGTGAGTACTCCCT 59.896 41.667 20.11 1.18 0.00 4.20
2780 2811 3.764237 TTTGTTGGTGAGTACTCCCTC 57.236 47.619 20.11 15.83 0.00 4.30
2781 2812 2.696526 TGTTGGTGAGTACTCCCTCT 57.303 50.000 20.11 0.00 32.50 3.69
2782 2813 2.248248 TGTTGGTGAGTACTCCCTCTG 58.752 52.381 20.11 0.00 32.50 3.35
2783 2814 2.249139 GTTGGTGAGTACTCCCTCTGT 58.751 52.381 20.11 0.00 32.50 3.41
2784 2815 3.181426 TGTTGGTGAGTACTCCCTCTGTA 60.181 47.826 20.11 2.47 32.50 2.74
2785 2816 3.820195 TGGTGAGTACTCCCTCTGTAA 57.180 47.619 20.11 1.82 32.50 2.41
2786 2817 4.122337 TGGTGAGTACTCCCTCTGTAAA 57.878 45.455 20.11 1.18 32.50 2.01
2787 2818 3.830755 TGGTGAGTACTCCCTCTGTAAAC 59.169 47.826 20.11 7.90 32.50 2.01
2788 2819 4.087907 GGTGAGTACTCCCTCTGTAAACT 58.912 47.826 20.11 0.00 32.50 2.66
2789 2820 5.222192 TGGTGAGTACTCCCTCTGTAAACTA 60.222 44.000 20.11 3.52 32.50 2.24
2790 2821 5.713861 GGTGAGTACTCCCTCTGTAAACTAA 59.286 44.000 20.11 0.00 32.50 2.24
2791 2822 6.380560 GGTGAGTACTCCCTCTGTAAACTAAT 59.619 42.308 20.11 0.00 32.50 1.73
2792 2823 7.559170 GGTGAGTACTCCCTCTGTAAACTAATA 59.441 40.741 20.11 0.00 32.50 0.98
2793 2824 9.134055 GTGAGTACTCCCTCTGTAAACTAATAT 57.866 37.037 20.11 0.00 32.50 1.28
2799 2830 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
2800 2831 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
2801 2832 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
2802 2833 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
2803 2834 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
2851 2882 8.862550 AACGTTCTTATATTAGTTTACGGAGG 57.137 34.615 0.00 0.00 32.54 4.30
2852 2883 7.428826 ACGTTCTTATATTAGTTTACGGAGGG 58.571 38.462 13.71 0.00 32.54 4.30
2853 2884 7.285401 ACGTTCTTATATTAGTTTACGGAGGGA 59.715 37.037 13.71 0.00 32.54 4.20
2854 2885 7.806960 CGTTCTTATATTAGTTTACGGAGGGAG 59.193 40.741 0.00 0.00 0.00 4.30
2855 2886 8.637099 GTTCTTATATTAGTTTACGGAGGGAGT 58.363 37.037 0.00 0.00 0.00 3.85
2856 2887 9.866655 TTCTTATATTAGTTTACGGAGGGAGTA 57.133 33.333 0.00 0.00 0.00 2.59
2857 2888 9.512588 TCTTATATTAGTTTACGGAGGGAGTAG 57.487 37.037 0.00 0.00 0.00 2.57
2858 2889 9.294614 CTTATATTAGTTTACGGAGGGAGTAGT 57.705 37.037 0.00 0.00 0.00 2.73
2859 2890 9.646522 TTATATTAGTTTACGGAGGGAGTAGTT 57.353 33.333 0.00 0.00 0.00 2.24
2860 2891 6.864151 ATTAGTTTACGGAGGGAGTAGTTT 57.136 37.500 0.00 0.00 0.00 2.66
2861 2892 6.670695 TTAGTTTACGGAGGGAGTAGTTTT 57.329 37.500 0.00 0.00 0.00 2.43
2862 2893 5.144692 AGTTTACGGAGGGAGTAGTTTTC 57.855 43.478 0.00 0.00 0.00 2.29
2919 2950 2.529389 AGGAAACGAGGGGCCTGT 60.529 61.111 0.84 0.00 0.00 4.00
2922 2953 1.375326 GAAACGAGGGGCCTGTCTT 59.625 57.895 0.84 0.00 0.00 3.01
3022 3054 7.255139 CCTTTACTTTGAAAAACGACCAGATCT 60.255 37.037 0.00 0.00 0.00 2.75
3277 3313 8.296713 TCAAAACCAAATTTAGAGCTACATGAC 58.703 33.333 0.00 0.00 0.00 3.06
3278 3314 8.299570 CAAAACCAAATTTAGAGCTACATGACT 58.700 33.333 0.00 0.00 0.00 3.41
3353 3389 1.471119 CAACTAGTCTACTGCCCCGA 58.529 55.000 0.00 0.00 0.00 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 2.359214 TGTTTGTTGCATCTTACGGCAA 59.641 40.909 0.00 0.00 46.84 4.52
65 66 1.950216 TGTTTGTTGCATCTTACGGCA 59.050 42.857 0.00 0.00 38.46 5.69
66 67 2.315901 GTGTTTGTTGCATCTTACGGC 58.684 47.619 0.00 0.00 0.00 5.68
67 68 2.552315 AGGTGTTTGTTGCATCTTACGG 59.448 45.455 0.00 0.00 0.00 4.02
68 69 3.554524 CAGGTGTTTGTTGCATCTTACG 58.445 45.455 0.00 0.00 0.00 3.18
101 102 5.393461 GGCAAGGTTGGTAAGAAATCATGAG 60.393 44.000 0.09 0.00 0.00 2.90
113 114 1.765230 AAAACGTGGCAAGGTTGGTA 58.235 45.000 4.04 0.00 34.71 3.25
200 206 5.960811 AGAAGGCTGCAGCTCCTTATATATA 59.039 40.000 35.82 0.00 42.37 0.86
201 207 4.782156 AGAAGGCTGCAGCTCCTTATATAT 59.218 41.667 35.82 11.07 42.37 0.86
253 259 3.119173 CCGCAGAGAAGAAACAGAGAGAT 60.119 47.826 0.00 0.00 0.00 2.75
353 360 4.342378 GGATGAGATACCAGACTACAAGCA 59.658 45.833 0.00 0.00 0.00 3.91
355 362 6.569418 CGATGGATGAGATACCAGACTACAAG 60.569 46.154 0.00 0.00 39.62 3.16
380 387 4.662145 GCATGAAGCCACATTACTTACAC 58.338 43.478 0.00 0.00 37.23 2.90
441 448 5.729510 AGCAAACTCTAAGATCTGAAGACC 58.270 41.667 0.00 0.00 0.00 3.85
489 496 1.616159 ACCAAATCAAACCAGGACCG 58.384 50.000 0.00 0.00 0.00 4.79
515 523 3.002965 TCATGACATCAATGAATGCGAGC 59.997 43.478 0.00 0.00 0.00 5.03
640 649 7.754624 TGATCTATTGCATGTAAGGGGAAATA 58.245 34.615 1.90 0.00 0.00 1.40
641 650 6.613699 TGATCTATTGCATGTAAGGGGAAAT 58.386 36.000 1.90 0.00 0.00 2.17
642 651 6.012337 TGATCTATTGCATGTAAGGGGAAA 57.988 37.500 1.90 0.00 0.00 3.13
646 655 5.391310 GCGAATGATCTATTGCATGTAAGGG 60.391 44.000 1.90 0.00 0.00 3.95
658 667 4.537135 ACGGGTAATGCGAATGATCTAT 57.463 40.909 0.00 0.00 0.00 1.98
667 676 0.101759 GCAGACTACGGGTAATGCGA 59.898 55.000 0.00 0.00 33.22 5.10
712 722 4.053295 CAGTTGAATTGAGGTGGCAAAAG 58.947 43.478 0.00 0.00 0.00 2.27
727 737 4.156556 GGCAACTTCATAGCATCAGTTGAA 59.843 41.667 13.71 2.18 46.08 2.69
729 739 3.441222 TGGCAACTTCATAGCATCAGTTG 59.559 43.478 6.54 6.54 45.98 3.16
774 784 0.173255 CTAACAAAGCCGCCCCAATG 59.827 55.000 0.00 0.00 0.00 2.82
840 850 7.164230 ACAGAAGTAACGAAGATTCAGATCT 57.836 36.000 0.00 0.00 44.51 2.75
1501 1527 2.564771 CACTCTGTCAGGCTTGAACAA 58.435 47.619 0.00 0.00 34.49 2.83
2046 2072 4.772231 CCCAGCAGGCCCTTGCAT 62.772 66.667 18.35 2.00 46.47 3.96
2190 2216 2.281070 ACCACGCTCACCTGCTTG 60.281 61.111 0.00 0.00 32.88 4.01
2466 2492 5.528870 CCTCCGCAAAAGTTTGTAGAATTT 58.471 37.500 5.71 0.00 40.24 1.82
2472 2498 0.589223 CGCCTCCGCAAAAGTTTGTA 59.411 50.000 5.71 0.00 40.24 2.41
2659 2687 8.773645 GGTTTTAGGACAAAAAGAAATGGAATG 58.226 33.333 0.00 0.00 0.00 2.67
2666 2694 9.810545 CTGTTATGGTTTTAGGACAAAAAGAAA 57.189 29.630 0.00 0.00 0.00 2.52
2667 2695 9.191479 TCTGTTATGGTTTTAGGACAAAAAGAA 57.809 29.630 0.00 0.00 0.00 2.52
2668 2696 8.754991 TCTGTTATGGTTTTAGGACAAAAAGA 57.245 30.769 0.00 0.00 0.00 2.52
2669 2697 8.630037 ACTCTGTTATGGTTTTAGGACAAAAAG 58.370 33.333 0.00 0.00 0.00 2.27
2675 2703 7.626452 GCATCAACTCTGTTATGGTTTTAGGAC 60.626 40.741 0.00 0.00 0.00 3.85
2684 2715 6.252015 CGAAAAATGCATCAACTCTGTTATGG 59.748 38.462 0.00 0.00 0.00 2.74
2688 2719 3.983344 GCGAAAAATGCATCAACTCTGTT 59.017 39.130 0.00 0.00 0.00 3.16
2693 2724 4.118410 TGTTTGCGAAAAATGCATCAACT 58.882 34.783 0.00 0.00 42.84 3.16
2694 2725 4.208873 TCTGTTTGCGAAAAATGCATCAAC 59.791 37.500 0.00 0.00 42.84 3.18
2696 2727 3.974912 TCTGTTTGCGAAAAATGCATCA 58.025 36.364 0.00 0.00 42.84 3.07
2697 2728 4.681025 TCTTCTGTTTGCGAAAAATGCATC 59.319 37.500 0.00 0.00 42.84 3.91
2701 2732 5.036737 AGTGTCTTCTGTTTGCGAAAAATG 58.963 37.500 0.00 0.00 0.00 2.32
2717 2748 6.494952 TCTACCCAAGAAGATAGAGTGTCTT 58.505 40.000 0.00 0.00 38.57 3.01
2718 2749 6.080969 TCTACCCAAGAAGATAGAGTGTCT 57.919 41.667 0.00 0.00 0.00 3.41
2719 2750 6.969993 ATCTACCCAAGAAGATAGAGTGTC 57.030 41.667 0.00 0.00 37.89 3.67
2720 2751 7.129425 AGAATCTACCCAAGAAGATAGAGTGT 58.871 38.462 0.00 0.00 37.89 3.55
2721 2752 7.595819 AGAATCTACCCAAGAAGATAGAGTG 57.404 40.000 0.00 0.00 37.89 3.51
2722 2753 8.729047 TCTAGAATCTACCCAAGAAGATAGAGT 58.271 37.037 0.00 0.00 37.89 3.24
2723 2754 9.753674 ATCTAGAATCTACCCAAGAAGATAGAG 57.246 37.037 0.00 0.00 37.89 2.43
2724 2755 9.747898 GATCTAGAATCTACCCAAGAAGATAGA 57.252 37.037 0.00 0.00 37.89 1.98
2725 2756 8.673711 CGATCTAGAATCTACCCAAGAAGATAG 58.326 40.741 0.00 0.00 37.89 2.08
2726 2757 8.164733 ACGATCTAGAATCTACCCAAGAAGATA 58.835 37.037 0.00 0.00 37.89 1.98
2727 2758 7.007723 ACGATCTAGAATCTACCCAAGAAGAT 58.992 38.462 0.00 0.00 37.89 2.40
2728 2759 6.366340 ACGATCTAGAATCTACCCAAGAAGA 58.634 40.000 0.00 0.00 37.89 2.87
2729 2760 6.488683 AGACGATCTAGAATCTACCCAAGAAG 59.511 42.308 0.00 0.00 37.89 2.85
2730 2761 6.366340 AGACGATCTAGAATCTACCCAAGAA 58.634 40.000 0.00 0.00 37.89 2.52
2731 2762 5.942961 AGACGATCTAGAATCTACCCAAGA 58.057 41.667 0.00 0.00 39.02 3.02
2732 2763 6.642707 AAGACGATCTAGAATCTACCCAAG 57.357 41.667 0.00 0.00 0.00 3.61
2733 2764 6.605995 TGAAAGACGATCTAGAATCTACCCAA 59.394 38.462 0.00 0.00 0.00 4.12
2734 2765 6.127101 TGAAAGACGATCTAGAATCTACCCA 58.873 40.000 0.00 0.00 0.00 4.51
2735 2766 6.636562 TGAAAGACGATCTAGAATCTACCC 57.363 41.667 0.00 0.00 0.00 3.69
2736 2767 9.535878 AAAATGAAAGACGATCTAGAATCTACC 57.464 33.333 0.00 0.00 0.00 3.18
2739 2770 9.442047 AACAAAATGAAAGACGATCTAGAATCT 57.558 29.630 0.00 0.00 0.00 2.40
2740 2771 9.483062 CAACAAAATGAAAGACGATCTAGAATC 57.517 33.333 0.00 0.00 0.00 2.52
2741 2772 8.454106 CCAACAAAATGAAAGACGATCTAGAAT 58.546 33.333 0.00 0.00 0.00 2.40
2742 2773 7.444183 ACCAACAAAATGAAAGACGATCTAGAA 59.556 33.333 0.00 0.00 0.00 2.10
2743 2774 6.934645 ACCAACAAAATGAAAGACGATCTAGA 59.065 34.615 0.00 0.00 0.00 2.43
2744 2775 7.017645 CACCAACAAAATGAAAGACGATCTAG 58.982 38.462 0.00 0.00 0.00 2.43
2745 2776 6.708502 TCACCAACAAAATGAAAGACGATCTA 59.291 34.615 0.00 0.00 0.00 1.98
2746 2777 5.530915 TCACCAACAAAATGAAAGACGATCT 59.469 36.000 0.00 0.00 0.00 2.75
2747 2778 5.757886 TCACCAACAAAATGAAAGACGATC 58.242 37.500 0.00 0.00 0.00 3.69
2748 2779 5.299279 ACTCACCAACAAAATGAAAGACGAT 59.701 36.000 0.00 0.00 0.00 3.73
2749 2780 4.638421 ACTCACCAACAAAATGAAAGACGA 59.362 37.500 0.00 0.00 0.00 4.20
2750 2781 4.920376 ACTCACCAACAAAATGAAAGACG 58.080 39.130 0.00 0.00 0.00 4.18
2751 2782 7.027778 AGTACTCACCAACAAAATGAAAGAC 57.972 36.000 0.00 0.00 0.00 3.01
2752 2783 6.262273 GGAGTACTCACCAACAAAATGAAAGA 59.738 38.462 23.91 0.00 0.00 2.52
2753 2784 6.438763 GGAGTACTCACCAACAAAATGAAAG 58.561 40.000 23.91 0.00 0.00 2.62
2754 2785 5.300792 GGGAGTACTCACCAACAAAATGAAA 59.699 40.000 23.91 0.00 0.00 2.69
2755 2786 4.825085 GGGAGTACTCACCAACAAAATGAA 59.175 41.667 23.91 0.00 0.00 2.57
2756 2787 4.104102 AGGGAGTACTCACCAACAAAATGA 59.896 41.667 21.68 0.00 32.15 2.57
2757 2788 4.398319 AGGGAGTACTCACCAACAAAATG 58.602 43.478 21.68 0.00 32.15 2.32
2758 2789 4.351111 AGAGGGAGTACTCACCAACAAAAT 59.649 41.667 21.68 0.00 39.97 1.82
2759 2790 3.714798 AGAGGGAGTACTCACCAACAAAA 59.285 43.478 21.68 0.00 39.97 2.44
2760 2791 3.071023 CAGAGGGAGTACTCACCAACAAA 59.929 47.826 21.68 0.00 39.97 2.83
2761 2792 2.632996 CAGAGGGAGTACTCACCAACAA 59.367 50.000 21.68 0.00 39.97 2.83
2762 2793 2.248248 CAGAGGGAGTACTCACCAACA 58.752 52.381 21.68 0.00 39.97 3.33
2763 2794 2.249139 ACAGAGGGAGTACTCACCAAC 58.751 52.381 21.68 16.69 39.97 3.77
2764 2795 2.696526 ACAGAGGGAGTACTCACCAA 57.303 50.000 21.68 0.00 39.97 3.67
2765 2796 3.820195 TTACAGAGGGAGTACTCACCA 57.180 47.619 21.68 2.89 39.97 4.17
2766 2797 4.087907 AGTTTACAGAGGGAGTACTCACC 58.912 47.826 21.68 19.49 39.97 4.02
2767 2798 6.830873 TTAGTTTACAGAGGGAGTACTCAC 57.169 41.667 23.91 21.11 39.97 3.51
2773 2804 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
2774 2805 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
2775 2806 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
2776 2807 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
2777 2808 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
2825 2856 9.305925 CCTCCGTAAACTAATATAAGAACGTTT 57.694 33.333 0.46 0.00 0.00 3.60
2826 2857 7.922811 CCCTCCGTAAACTAATATAAGAACGTT 59.077 37.037 0.00 0.00 0.00 3.99
2827 2858 7.285401 TCCCTCCGTAAACTAATATAAGAACGT 59.715 37.037 0.00 0.00 0.00 3.99
2828 2859 7.651808 TCCCTCCGTAAACTAATATAAGAACG 58.348 38.462 0.00 0.00 0.00 3.95
2829 2860 8.637099 ACTCCCTCCGTAAACTAATATAAGAAC 58.363 37.037 0.00 0.00 0.00 3.01
2830 2861 8.773033 ACTCCCTCCGTAAACTAATATAAGAA 57.227 34.615 0.00 0.00 0.00 2.52
2831 2862 9.512588 CTACTCCCTCCGTAAACTAATATAAGA 57.487 37.037 0.00 0.00 0.00 2.10
2832 2863 9.294614 ACTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
2833 2864 9.646522 AACTACTCCCTCCGTAAACTAATATAA 57.353 33.333 0.00 0.00 0.00 0.98
2834 2865 9.646522 AAACTACTCCCTCCGTAAACTAATATA 57.353 33.333 0.00 0.00 0.00 0.86
2835 2866 8.544687 AAACTACTCCCTCCGTAAACTAATAT 57.455 34.615 0.00 0.00 0.00 1.28
2836 2867 7.961326 AAACTACTCCCTCCGTAAACTAATA 57.039 36.000 0.00 0.00 0.00 0.98
2837 2868 6.864151 AAACTACTCCCTCCGTAAACTAAT 57.136 37.500 0.00 0.00 0.00 1.73
2838 2869 6.494835 AGAAAACTACTCCCTCCGTAAACTAA 59.505 38.462 0.00 0.00 0.00 2.24
2839 2870 6.012745 AGAAAACTACTCCCTCCGTAAACTA 58.987 40.000 0.00 0.00 0.00 2.24
2840 2871 4.837298 AGAAAACTACTCCCTCCGTAAACT 59.163 41.667 0.00 0.00 0.00 2.66
2841 2872 5.144692 AGAAAACTACTCCCTCCGTAAAC 57.855 43.478 0.00 0.00 0.00 2.01
2842 2873 5.813513 AAGAAAACTACTCCCTCCGTAAA 57.186 39.130 0.00 0.00 0.00 2.01
2843 2874 7.364144 GGAATAAGAAAACTACTCCCTCCGTAA 60.364 40.741 0.00 0.00 0.00 3.18
2844 2875 6.097412 GGAATAAGAAAACTACTCCCTCCGTA 59.903 42.308 0.00 0.00 0.00 4.02
2845 2876 5.105023 GGAATAAGAAAACTACTCCCTCCGT 60.105 44.000 0.00 0.00 0.00 4.69
2846 2877 5.358090 GGAATAAGAAAACTACTCCCTCCG 58.642 45.833 0.00 0.00 0.00 4.63
2847 2878 5.191124 TGGGAATAAGAAAACTACTCCCTCC 59.809 44.000 5.86 0.00 41.46 4.30
2848 2879 6.309389 TGGGAATAAGAAAACTACTCCCTC 57.691 41.667 5.86 0.00 41.46 4.30
2849 2880 6.713731 TTGGGAATAAGAAAACTACTCCCT 57.286 37.500 5.86 0.00 41.46 4.20
2850 2881 7.770366 TTTTGGGAATAAGAAAACTACTCCC 57.230 36.000 0.00 0.00 41.30 4.30
2851 2882 9.244292 AGATTTTGGGAATAAGAAAACTACTCC 57.756 33.333 0.00 0.00 0.00 3.85
2883 2914 2.360600 TAAAAGGTGCGCGGCCAT 60.361 55.556 20.52 8.03 0.00 4.40
2912 2943 2.820037 GCGCTGTAAGACAGGCCC 60.820 66.667 0.00 0.00 46.01 5.80
2919 2950 1.723273 GCATGCATGCGCTGTAAGA 59.277 52.632 33.99 0.00 44.67 2.10
3049 3082 9.087424 GGTTTGTAAGATATGGCTTTTTGAATC 57.913 33.333 0.00 0.00 0.00 2.52
3069 3102 2.884012 TGAATTCTGATGTGCGGTTTGT 59.116 40.909 7.05 0.00 0.00 2.83
3105 3138 2.101575 CGTCGCGAGGATTCGGAA 59.898 61.111 23.61 0.00 46.76 4.30
3277 3313 5.530915 TGTTGTAACCTCATTGGAAGTTCAG 59.469 40.000 5.01 0.00 39.71 3.02
3278 3314 5.441500 TGTTGTAACCTCATTGGAAGTTCA 58.558 37.500 5.01 0.00 39.71 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.