Multiple sequence alignment - TraesCS4D01G050200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G050200 chr4D 100.000 5659 0 0 1 5659 25991941 25986283 0.000000e+00 10451.0
1 TraesCS4D01G050200 chr4D 75.519 241 44 14 5205 5438 440037504 440037736 2.790000e-18 104.0
2 TraesCS4D01G050200 chr4D 82.883 111 1 5 5 102 25983386 25983491 3.630000e-12 84.2
3 TraesCS4D01G050200 chr4B 92.650 4354 213 44 892 5186 38284565 38280260 0.000000e+00 6168.0
4 TraesCS4D01G050200 chr4B 88.562 918 36 23 6 868 38285462 38284559 0.000000e+00 1050.0
5 TraesCS4D01G050200 chr4B 88.213 263 3 4 6 250 38276326 38276578 7.170000e-74 289.0
6 TraesCS4D01G050200 chr4B 80.083 241 38 10 5206 5439 379878672 379878435 2.710000e-38 171.0
7 TraesCS4D01G050200 chr4B 81.746 126 13 6 5460 5576 38280252 38280128 4.670000e-16 97.1
8 TraesCS4D01G050200 chr4B 100.000 51 0 0 5609 5659 38280128 38280078 1.680000e-15 95.3
9 TraesCS4D01G050200 chr4A 94.662 1686 72 12 2211 3885 577230329 577228651 0.000000e+00 2599.0
10 TraesCS4D01G050200 chr4A 91.031 1271 46 25 3821 5058 577228643 577227408 0.000000e+00 1653.0
11 TraesCS4D01G050200 chr4A 88.372 129 11 2 5060 5185 577226985 577226858 9.820000e-33 152.0
12 TraesCS4D01G050200 chr4A 88.785 107 7 3 5445 5550 577226840 577226738 5.950000e-25 126.0
13 TraesCS4D01G050200 chr4A 98.387 62 1 0 5598 5659 577226739 577226678 5.990000e-20 110.0
14 TraesCS4D01G050200 chr7D 83.475 236 35 4 5206 5438 149528924 149528690 3.430000e-52 217.0
15 TraesCS4D01G050200 chr7D 79.592 245 48 2 5196 5438 605228928 605228684 2.100000e-39 174.0
16 TraesCS4D01G050200 chr7D 79.343 213 36 7 5232 5439 605228712 605228921 5.910000e-30 143.0
17 TraesCS4D01G050200 chr1B 83.682 239 29 9 5206 5438 652569019 652568785 3.430000e-52 217.0
18 TraesCS4D01G050200 chr1B 82.700 237 36 5 5206 5438 487806579 487806344 7.430000e-49 206.0
19 TraesCS4D01G050200 chr1B 80.579 242 39 8 5203 5438 353348951 353349190 4.500000e-41 180.0
20 TraesCS4D01G050200 chr5B 77.559 254 48 9 5193 5439 583520677 583520426 1.640000e-30 145.0
21 TraesCS4D01G050200 chr5A 79.096 177 32 5 5206 5379 293396128 293396302 3.580000e-22 117.0
22 TraesCS4D01G050200 chr3B 76.168 214 34 14 5235 5438 31305658 31305452 4.670000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G050200 chr4D 25986283 25991941 5658 True 10451.0 10451 100.0000 1 5659 1 chr4D.!!$R1 5658
1 TraesCS4D01G050200 chr4B 38280078 38285462 5384 True 1852.6 6168 90.7395 6 5659 4 chr4B.!!$R2 5653
2 TraesCS4D01G050200 chr4A 577226678 577230329 3651 True 928.0 2599 92.2474 2211 5659 5 chr4A.!!$R1 3448

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
296 313 0.602905 CACTCCCGAACGAAAAGCCT 60.603 55.0 0.00 0.0 0.00 4.58 F
1396 1466 0.099082 CTCGCTCGAGTACCTCAACC 59.901 60.0 15.13 0.0 37.47 3.77 F
1731 1804 0.102481 TCAGCGGGTCGATTAGCTTC 59.898 55.0 8.43 0.0 37.94 3.86 F
2224 2300 0.319555 TGCCACACTTGAGACGCTAC 60.320 55.0 0.00 0.0 0.00 3.58 F
2959 3035 0.535335 GCTGACCAAGGTCCGTCATA 59.465 55.0 16.18 0.0 43.97 2.15 F
3914 4070 0.907704 TAGCCCCAGACCGTGAATGT 60.908 55.0 0.00 0.0 0.00 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2103 2179 0.033504 ATACAACGCCCGGCTGATAG 59.966 55.000 8.05 0.0 0.0 2.08 R
2959 3035 0.905357 AGCAGCGATACAAGGTTCCT 59.095 50.000 0.00 0.0 0.0 3.36 R
2970 3046 1.759445 AGACAGTATCCAAGCAGCGAT 59.241 47.619 0.00 0.0 0.0 4.58 R
4223 4380 0.471617 GGTGCATGCTATCCTCAGGT 59.528 55.000 20.33 0.0 0.0 4.00 R
4451 4608 0.247460 CGTCTGAATCTGGGTCTGCA 59.753 55.000 0.00 0.0 0.0 4.41 R
5537 6164 0.110238 CCATCGCACGACCAACTTTG 60.110 55.000 0.00 0.0 0.0 2.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 2.338500 CTTTCCTATTATCTCCGGCGC 58.662 52.381 0.00 0.00 0.00 6.53
44 45 0.606604 TTCCTATTATCTCCGGCGCC 59.393 55.000 19.07 19.07 0.00 6.53
45 46 1.153823 CCTATTATCTCCGGCGCCG 60.154 63.158 41.00 41.00 39.44 6.46
46 47 1.805945 CTATTATCTCCGGCGCCGC 60.806 63.158 42.39 8.75 38.24 6.53
47 48 3.291101 TATTATCTCCGGCGCCGCC 62.291 63.158 42.39 20.42 46.75 6.13
189 203 2.279851 CTGTGCCGTCACCGTCAA 60.280 61.111 0.00 0.00 42.46 3.18
240 257 9.438228 AAAACCCGAAAAAGATAAAACTGAAAA 57.562 25.926 0.00 0.00 0.00 2.29
255 272 8.556517 AAAACTGAAAAGAGCGTTACAAATAC 57.443 30.769 0.00 0.00 0.00 1.89
290 307 2.654877 GGAGCACTCCCGAACGAA 59.345 61.111 5.30 0.00 43.94 3.85
296 313 0.602905 CACTCCCGAACGAAAAGCCT 60.603 55.000 0.00 0.00 0.00 4.58
372 406 3.469970 ATCAGGCCGTCCATCGCA 61.470 61.111 0.00 0.00 38.35 5.10
499 548 2.638354 CGTAGTACACCCCACCGCA 61.638 63.158 0.38 0.00 0.00 5.69
503 552 3.315949 TACACCCCACCGCAGACC 61.316 66.667 0.00 0.00 0.00 3.85
510 559 1.982395 CCACCGCAGACCCTGACTA 60.982 63.158 0.00 0.00 32.44 2.59
548 597 0.820871 GCCTCCACTCTACTCCACTG 59.179 60.000 0.00 0.00 0.00 3.66
551 600 2.357257 CCTCCACTCTACTCCACTGCTA 60.357 54.545 0.00 0.00 0.00 3.49
688 743 1.452145 TTGGTGCGAGTTTCAAGGGC 61.452 55.000 0.00 0.00 0.00 5.19
693 748 1.587043 GCGAGTTTCAAGGGCTTCCC 61.587 60.000 0.00 0.00 45.90 3.97
748 803 1.076533 CGTGACGAATCCAAGACGGG 61.077 60.000 0.00 0.00 34.36 5.28
749 804 0.739813 GTGACGAATCCAAGACGGGG 60.740 60.000 0.00 0.00 34.36 5.73
868 924 2.202987 CGCATGTGCCCTCTCTCC 60.203 66.667 0.00 0.00 37.91 3.71
869 925 2.202987 GCATGTGCCCTCTCTCCG 60.203 66.667 0.00 0.00 34.31 4.63
870 926 2.202987 CATGTGCCCTCTCTCCGC 60.203 66.667 0.00 0.00 0.00 5.54
871 927 3.474570 ATGTGCCCTCTCTCCGCC 61.475 66.667 0.00 0.00 0.00 6.13
874 930 4.804420 TGCCCTCTCTCCGCCCAT 62.804 66.667 0.00 0.00 0.00 4.00
875 931 4.247380 GCCCTCTCTCCGCCCATG 62.247 72.222 0.00 0.00 0.00 3.66
876 932 2.765807 CCCTCTCTCCGCCCATGT 60.766 66.667 0.00 0.00 0.00 3.21
877 933 2.503061 CCTCTCTCCGCCCATGTG 59.497 66.667 0.00 0.00 0.00 3.21
878 934 2.202987 CTCTCTCCGCCCATGTGC 60.203 66.667 0.00 0.00 0.00 4.57
879 935 3.746949 CTCTCTCCGCCCATGTGCC 62.747 68.421 0.00 0.00 0.00 5.01
880 936 4.864334 CTCTCCGCCCATGTGCCC 62.864 72.222 0.00 0.00 0.00 5.36
897 953 3.591835 CGGCGCTCCCTCTCTCTC 61.592 72.222 7.64 0.00 0.00 3.20
938 994 2.025155 TCTGCATCCCGAGACTTACTC 58.975 52.381 0.00 0.00 41.79 2.59
939 995 1.067821 CTGCATCCCGAGACTTACTCC 59.932 57.143 0.00 0.00 42.18 3.85
943 999 0.708802 TCCCGAGACTTACTCCCCTT 59.291 55.000 0.00 0.00 42.18 3.95
983 1044 2.066393 CCCCCTTCCGCATCTCTCA 61.066 63.158 0.00 0.00 0.00 3.27
991 1052 1.358402 CGCATCTCTCACCTCTCCG 59.642 63.158 0.00 0.00 0.00 4.63
1017 1078 1.921346 AATGCAGTCCCCCACCGTA 60.921 57.895 0.00 0.00 0.00 4.02
1071 1132 3.174265 GGATCCCTCCTGGCCCTG 61.174 72.222 0.00 0.00 38.65 4.45
1191 1252 3.756727 GACGGGTGGGTCGACTCC 61.757 72.222 14.10 14.14 0.00 3.85
1233 1303 3.681835 GTGACCTGCGACTCCGGT 61.682 66.667 0.00 0.00 36.06 5.28
1261 1331 4.760047 CCGGCGTCCAGGTCAAGG 62.760 72.222 6.01 0.00 0.00 3.61
1334 1404 2.125912 GCGCCTCGAGCTCTTCAA 60.126 61.111 12.85 0.00 40.39 2.69
1396 1466 0.099082 CTCGCTCGAGTACCTCAACC 59.901 60.000 15.13 0.00 37.47 3.77
1408 1478 0.944311 CCTCAACCTCCACGACAACG 60.944 60.000 0.00 0.00 45.75 4.10
1418 1488 1.145377 ACGACAACGGCTTCACCTT 59.855 52.632 0.00 0.00 44.46 3.50
1427 1497 1.602237 GCTTCACCTTCATCCCGGA 59.398 57.895 0.73 0.00 0.00 5.14
1446 1516 2.373224 GAGGATTTCTTCAAGGGGCTG 58.627 52.381 0.00 0.00 0.00 4.85
1486 1556 0.107831 CCTCGACCACAACCCTTTCA 59.892 55.000 0.00 0.00 0.00 2.69
1487 1557 1.476110 CCTCGACCACAACCCTTTCAA 60.476 52.381 0.00 0.00 0.00 2.69
1489 1559 0.310854 CGACCACAACCCTTTCAAGC 59.689 55.000 0.00 0.00 0.00 4.01
1527 1597 2.202932 CTCGGGGACTGCCAATCG 60.203 66.667 0.00 0.00 35.15 3.34
1528 1598 2.682136 TCGGGGACTGCCAATCGA 60.682 61.111 0.00 0.00 35.15 3.59
1551 1621 1.576421 CAACTTCTCCGCCAACAGC 59.424 57.895 0.00 0.00 38.52 4.40
1582 1652 3.069318 GGACGCTCCCGGACTTCT 61.069 66.667 0.73 0.00 39.22 2.85
1606 1676 4.227134 CGATGCCGTCCCTCCAGG 62.227 72.222 0.00 0.00 0.00 4.45
1621 1691 0.464013 CCAGGAGCTCAATCTGGCAG 60.464 60.000 20.34 8.58 41.12 4.85
1622 1692 0.464013 CAGGAGCTCAATCTGGCAGG 60.464 60.000 17.19 0.00 0.00 4.85
1629 1699 1.280133 CTCAATCTGGCAGGGAACTCA 59.720 52.381 15.73 0.00 40.21 3.41
1638 1708 1.913762 AGGGAACTCACTGTCCGGG 60.914 63.158 0.00 0.00 32.90 5.73
1641 1711 2.847234 AACTCACTGTCCGGGCCA 60.847 61.111 2.12 0.00 0.00 5.36
1690 1763 1.376553 GAGGTGCTCTGGCTCAACC 60.377 63.158 0.00 0.00 39.59 3.77
1705 1778 4.565652 GGCTCAACCAGAAAATAGAGACCA 60.566 45.833 0.00 0.00 38.86 4.02
1706 1779 4.393371 GCTCAACCAGAAAATAGAGACCAC 59.607 45.833 0.00 0.00 0.00 4.16
1708 1781 3.611766 ACCAGAAAATAGAGACCACCG 57.388 47.619 0.00 0.00 0.00 4.94
1711 1784 2.093447 CAGAAAATAGAGACCACCGGCT 60.093 50.000 0.00 0.00 0.00 5.52
1731 1804 0.102481 TCAGCGGGTCGATTAGCTTC 59.898 55.000 8.43 0.00 37.94 3.86
1734 1807 1.207377 GCGGGTCGATTAGCTTCGTC 61.207 60.000 7.63 2.46 40.03 4.20
1740 1813 0.572590 CGATTAGCTTCGTCGCCAAG 59.427 55.000 0.00 0.00 34.46 3.61
1741 1814 1.797713 CGATTAGCTTCGTCGCCAAGA 60.798 52.381 0.00 0.00 34.46 3.02
1746 1819 1.696832 GCTTCGTCGCCAAGATGACC 61.697 60.000 0.00 0.00 44.01 4.02
1751 1824 1.377202 TCGCCAAGATGACCAAGGC 60.377 57.895 0.00 0.00 41.86 4.35
1756 1829 0.321564 CAAGATGACCAAGGCCACGA 60.322 55.000 5.01 0.00 0.00 4.35
1778 1851 2.280797 GTGGCTGCACTCCAACGA 60.281 61.111 0.50 0.00 35.01 3.85
1807 1880 2.646175 CCCTTGCCGGACTTCTCGA 61.646 63.158 5.05 0.00 33.16 4.04
1808 1881 1.292223 CCTTGCCGGACTTCTCGAA 59.708 57.895 5.05 0.00 33.16 3.71
1832 1905 1.928868 ACCAGCCTTTCTGATTTGGG 58.071 50.000 0.00 0.00 45.72 4.12
1839 1912 2.290323 CCTTTCTGATTTGGGTCTCCGT 60.290 50.000 0.00 0.00 35.24 4.69
1859 1932 2.738521 CAACCAGCTCACCGGTCG 60.739 66.667 2.59 0.00 33.17 4.79
1860 1933 2.915659 AACCAGCTCACCGGTCGA 60.916 61.111 2.59 5.23 33.17 4.20
1868 1941 3.680786 CACCGGTCGAGTGCCAGA 61.681 66.667 2.59 0.00 0.00 3.86
1934 2007 0.962356 AATTTGCTGCAGGGACCGAG 60.962 55.000 17.12 0.00 0.00 4.63
1956 2029 1.479389 CCCAACTTTGCTCCCTCTGTT 60.479 52.381 0.00 0.00 0.00 3.16
1967 2040 3.397482 CTCCCTCTGTTGAAGTTGACAG 58.603 50.000 8.89 8.89 43.54 3.51
1969 2042 2.104792 CCCTCTGTTGAAGTTGACAGGA 59.895 50.000 13.30 3.59 42.67 3.86
2111 2187 0.888285 GACCCATGCAGCTATCAGCC 60.888 60.000 0.00 0.00 43.77 4.85
2145 2221 5.407502 TGTGATAGTGGTAAGAACATCACG 58.592 41.667 7.71 0.00 43.20 4.35
2199 2275 1.274728 AGCATCTCACCATCTATCGGC 59.725 52.381 0.00 0.00 0.00 5.54
2219 2295 3.549299 CAAGATTGCCACACTTGAGAC 57.451 47.619 0.00 0.00 42.12 3.36
2224 2300 0.319555 TGCCACACTTGAGACGCTAC 60.320 55.000 0.00 0.00 0.00 3.58
2288 2364 3.011085 CTGAGTTGCCAGCACTGAA 57.989 52.632 0.00 0.00 0.00 3.02
2296 2372 1.032014 GCCAGCACTGAAAAAGGTCA 58.968 50.000 0.00 0.00 0.00 4.02
2379 2455 2.365293 ACTTGATGGCAACCCAAACTTC 59.635 45.455 0.00 0.00 46.14 3.01
2550 2626 4.214332 GCTGCATTAGGGTTCTATTGCTAC 59.786 45.833 16.17 8.45 45.65 3.58
2703 2779 1.140852 ACAAGCGAGCCATATAGCCAA 59.859 47.619 0.00 0.00 0.00 4.52
2829 2905 2.193786 GGTCGTGGTGGGTTTGGT 59.806 61.111 0.00 0.00 0.00 3.67
2916 2992 2.407340 TGGGCAACAAGGGGTTAAAT 57.593 45.000 0.00 0.00 37.72 1.40
2959 3035 0.535335 GCTGACCAAGGTCCGTCATA 59.465 55.000 16.18 0.00 43.97 2.15
2970 3046 2.762327 GGTCCGTCATAGGAACCTTGTA 59.238 50.000 0.00 0.00 42.09 2.41
3360 3436 6.039047 AGCATCCTGTATATTTTGTGCTTCAG 59.961 38.462 0.00 0.00 38.41 3.02
3441 3517 9.797556 CGTCATATCCAAAATAGTATCCGAATA 57.202 33.333 0.00 0.00 0.00 1.75
3493 3570 7.989826 ACTGCCATTTAGTTCTGATGATTTAC 58.010 34.615 0.00 0.00 0.00 2.01
3565 3642 9.515020 GGTGCTTCATAAATTCGAATATTCAAA 57.485 29.630 11.83 3.65 0.00 2.69
3649 3726 8.213518 ACATGTGTAGTATTGGACAATCAATC 57.786 34.615 0.00 0.00 38.24 2.67
3673 3750 6.053650 CCAATGATCAACTCTGATGAGCTTA 58.946 40.000 0.00 0.00 42.60 3.09
3713 3790 5.755409 TTTGACCAGAAGTTAGCATCCTA 57.245 39.130 0.00 0.00 0.00 2.94
3765 3842 5.530915 TGTATGTTGAGTTAACTGCTTTGCT 59.469 36.000 14.14 0.00 40.05 3.91
3770 3847 5.673337 TGAGTTAACTGCTTTGCTTACTG 57.327 39.130 14.14 0.00 0.00 2.74
3813 3899 2.030185 CACGGAGTAGCTGTGTACACTT 60.030 50.000 25.60 14.00 46.62 3.16
3814 3900 2.626743 ACGGAGTAGCTGTGTACACTTT 59.373 45.455 25.60 13.67 41.94 2.66
3815 3901 3.069158 ACGGAGTAGCTGTGTACACTTTT 59.931 43.478 25.60 13.35 41.94 2.27
3816 3902 4.056050 CGGAGTAGCTGTGTACACTTTTT 58.944 43.478 25.60 11.73 0.00 1.94
3849 3935 9.472361 AAACATGTTCATGAGAAGATTTCTTTG 57.528 29.630 12.39 0.00 40.87 2.77
3914 4070 0.907704 TAGCCCCAGACCGTGAATGT 60.908 55.000 0.00 0.00 0.00 2.71
3922 4078 4.503910 CCAGACCGTGAATGTATCTTCAA 58.496 43.478 0.00 0.00 36.92 2.69
3967 4123 3.067833 GCAACTTCCTGTCAGGAACTAC 58.932 50.000 27.39 14.67 46.88 2.73
3969 4125 4.058817 CAACTTCCTGTCAGGAACTACAC 58.941 47.826 27.39 0.00 46.88 2.90
4099 4255 3.971032 GCCACTTGCAATACCTGTATC 57.029 47.619 0.00 0.00 40.77 2.24
4223 4380 1.514678 GGGCGCTTGATGACACACAA 61.515 55.000 7.64 0.00 0.00 3.33
4436 4593 1.371183 CGTGCTCTCCACCCTTTCA 59.629 57.895 0.00 0.00 41.53 2.69
4451 4608 3.555966 CCTTTCAGAAGTGTGGAAACCT 58.444 45.455 0.00 0.00 0.00 3.50
4484 4641 1.271379 TCAGACGACAGTTACGGCATT 59.729 47.619 0.00 0.00 41.61 3.56
4667 4824 1.925052 CGGAAGATAAACCGCGCTC 59.075 57.895 5.56 0.00 42.55 5.03
4681 4848 2.029288 CGCTCGAAAGCCAGAAGCA 61.029 57.895 0.00 0.00 46.34 3.91
4682 4849 1.568612 CGCTCGAAAGCCAGAAGCAA 61.569 55.000 0.00 0.00 46.34 3.91
4683 4850 3.431254 CGCTCGAAAGCCAGAAGCAAG 62.431 57.143 0.00 0.00 46.34 4.01
4762 4949 5.559148 TTTAAATGTTGGTGGATTTGGCT 57.441 34.783 0.00 0.00 0.00 4.75
4804 4991 4.679373 AGCTGTCCTTCGATCATGTATT 57.321 40.909 0.00 0.00 0.00 1.89
4843 5033 0.912486 AGAATTCCCTGGAAGTCCGG 59.088 55.000 19.58 0.00 46.47 5.14
4983 5181 0.321122 CTCAACAGCTCCACTGGTCC 60.321 60.000 0.00 0.00 45.97 4.46
4986 5184 3.314331 CAGCTCCACTGGTCCGGT 61.314 66.667 0.00 0.00 43.19 5.28
4987 5185 3.314331 AGCTCCACTGGTCCGGTG 61.314 66.667 22.31 22.31 40.14 4.94
5004 5202 2.609984 CGGTGGTGTGGTCGTTGTTATA 60.610 50.000 0.00 0.00 0.00 0.98
5036 5240 5.359194 TTTCTTCCTGGGACTATCATGAC 57.641 43.478 0.00 0.00 0.00 3.06
5037 5241 4.271807 TCTTCCTGGGACTATCATGACT 57.728 45.455 0.00 0.00 0.00 3.41
5040 5244 4.204792 TCCTGGGACTATCATGACTCAT 57.795 45.455 0.00 0.00 0.00 2.90
5041 5245 3.899980 TCCTGGGACTATCATGACTCATG 59.100 47.826 12.25 12.25 42.60 3.07
5052 5256 5.426689 TCATGACTCATGAGGTAGCTTTT 57.573 39.130 26.08 2.66 44.60 2.27
5054 5258 4.890158 TGACTCATGAGGTAGCTTTTGA 57.110 40.909 26.08 1.87 0.00 2.69
5055 5259 4.825422 TGACTCATGAGGTAGCTTTTGAG 58.175 43.478 26.08 23.06 37.27 3.02
5057 5261 3.840666 ACTCATGAGGTAGCTTTTGAGGA 59.159 43.478 26.08 8.37 35.93 3.71
5058 5262 4.081198 ACTCATGAGGTAGCTTTTGAGGAG 60.081 45.833 26.08 16.28 35.93 3.69
5083 5701 5.803470 GCCTACCTCCATTAATTATTCGGCT 60.803 44.000 0.00 0.00 0.00 5.52
5151 5777 2.054799 ACACCCTGTCTAATGTGTGGT 58.945 47.619 0.00 0.00 40.24 4.16
5190 5816 6.136541 GGAAATACTCCAGCATAAAAGTGG 57.863 41.667 0.00 0.00 44.67 4.00
5191 5817 5.450550 GGAAATACTCCAGCATAAAAGTGGC 60.451 44.000 0.00 0.00 44.67 5.01
5192 5818 2.584835 ACTCCAGCATAAAAGTGGCA 57.415 45.000 0.00 0.00 0.00 4.92
5194 5820 1.133790 CTCCAGCATAAAAGTGGCAGC 59.866 52.381 0.00 0.00 0.00 5.25
5195 5821 1.180029 CCAGCATAAAAGTGGCAGCT 58.820 50.000 0.00 0.00 0.00 4.24
5196 5822 2.026356 TCCAGCATAAAAGTGGCAGCTA 60.026 45.455 0.00 0.00 0.00 3.32
5197 5823 2.357009 CCAGCATAAAAGTGGCAGCTAG 59.643 50.000 0.00 0.00 0.00 3.42
5199 5825 4.191544 CAGCATAAAAGTGGCAGCTAGTA 58.808 43.478 0.00 0.00 0.00 1.82
5200 5826 4.272018 CAGCATAAAAGTGGCAGCTAGTAG 59.728 45.833 0.00 0.00 0.00 2.57
5201 5827 4.080863 AGCATAAAAGTGGCAGCTAGTAGT 60.081 41.667 0.00 0.00 0.00 2.73
5202 5828 4.034510 GCATAAAAGTGGCAGCTAGTAGTG 59.965 45.833 0.00 0.00 0.00 2.74
5203 5829 3.771577 AAAAGTGGCAGCTAGTAGTGT 57.228 42.857 0.00 0.00 0.00 3.55
5204 5830 2.751166 AAGTGGCAGCTAGTAGTGTG 57.249 50.000 0.00 0.00 0.00 3.82
5205 5831 0.247736 AGTGGCAGCTAGTAGTGTGC 59.752 55.000 14.88 14.88 35.07 4.57
5206 5832 0.247736 GTGGCAGCTAGTAGTGTGCT 59.752 55.000 19.80 1.98 36.15 4.40
5207 5833 1.476891 GTGGCAGCTAGTAGTGTGCTA 59.523 52.381 19.80 14.35 36.15 3.49
5208 5834 1.476891 TGGCAGCTAGTAGTGTGCTAC 59.523 52.381 19.80 9.71 45.96 3.58
5209 5835 1.202428 GGCAGCTAGTAGTGTGCTACC 60.202 57.143 19.80 5.04 46.60 3.18
5210 5836 1.751924 GCAGCTAGTAGTGTGCTACCT 59.248 52.381 15.59 0.00 46.60 3.08
5211 5837 2.166664 GCAGCTAGTAGTGTGCTACCTT 59.833 50.000 15.59 0.00 46.60 3.50
5212 5838 3.735514 GCAGCTAGTAGTGTGCTACCTTC 60.736 52.174 15.59 0.00 46.60 3.46
5213 5839 2.683867 AGCTAGTAGTGTGCTACCTTCG 59.316 50.000 0.00 0.00 46.60 3.79
5214 5840 2.422832 GCTAGTAGTGTGCTACCTTCGT 59.577 50.000 0.00 0.00 46.60 3.85
5215 5841 3.487209 GCTAGTAGTGTGCTACCTTCGTC 60.487 52.174 0.00 0.00 46.60 4.20
5216 5842 1.817447 AGTAGTGTGCTACCTTCGTCC 59.183 52.381 1.63 0.00 46.60 4.79
5217 5843 1.817447 GTAGTGTGCTACCTTCGTCCT 59.183 52.381 0.00 0.00 41.21 3.85
5218 5844 0.603569 AGTGTGCTACCTTCGTCCTG 59.396 55.000 0.00 0.00 0.00 3.86
5219 5845 0.389948 GTGTGCTACCTTCGTCCTGG 60.390 60.000 0.00 0.00 0.00 4.45
5220 5846 0.830444 TGTGCTACCTTCGTCCTGGT 60.830 55.000 0.00 0.00 40.12 4.00
5221 5847 0.320697 GTGCTACCTTCGTCCTGGTT 59.679 55.000 0.00 0.00 37.74 3.67
5222 5848 1.053424 TGCTACCTTCGTCCTGGTTT 58.947 50.000 0.00 0.00 37.74 3.27
5223 5849 2.028748 GTGCTACCTTCGTCCTGGTTTA 60.029 50.000 0.00 0.00 37.74 2.01
5224 5850 2.835764 TGCTACCTTCGTCCTGGTTTAT 59.164 45.455 0.00 0.00 37.74 1.40
5225 5851 3.262405 TGCTACCTTCGTCCTGGTTTATT 59.738 43.478 0.00 0.00 37.74 1.40
5226 5852 3.621715 GCTACCTTCGTCCTGGTTTATTG 59.378 47.826 0.00 0.00 37.74 1.90
5227 5853 4.622220 GCTACCTTCGTCCTGGTTTATTGA 60.622 45.833 0.00 0.00 37.74 2.57
5228 5854 4.569719 ACCTTCGTCCTGGTTTATTGAT 57.430 40.909 0.00 0.00 31.62 2.57
5229 5855 4.918588 ACCTTCGTCCTGGTTTATTGATT 58.081 39.130 0.00 0.00 31.62 2.57
5230 5856 4.700213 ACCTTCGTCCTGGTTTATTGATTG 59.300 41.667 0.00 0.00 31.62 2.67
5231 5857 4.438744 CCTTCGTCCTGGTTTATTGATTGC 60.439 45.833 0.00 0.00 0.00 3.56
5232 5858 3.013921 TCGTCCTGGTTTATTGATTGCC 58.986 45.455 0.00 0.00 0.00 4.52
5233 5859 3.016736 CGTCCTGGTTTATTGATTGCCT 58.983 45.455 0.00 0.00 0.00 4.75
5234 5860 3.443681 CGTCCTGGTTTATTGATTGCCTT 59.556 43.478 0.00 0.00 0.00 4.35
5235 5861 4.082245 CGTCCTGGTTTATTGATTGCCTTT 60.082 41.667 0.00 0.00 0.00 3.11
5236 5862 5.170748 GTCCTGGTTTATTGATTGCCTTTG 58.829 41.667 0.00 0.00 0.00 2.77
5237 5863 4.837860 TCCTGGTTTATTGATTGCCTTTGT 59.162 37.500 0.00 0.00 0.00 2.83
5238 5864 6.013379 TCCTGGTTTATTGATTGCCTTTGTA 58.987 36.000 0.00 0.00 0.00 2.41
5239 5865 6.667414 TCCTGGTTTATTGATTGCCTTTGTAT 59.333 34.615 0.00 0.00 0.00 2.29
5240 5866 7.180051 TCCTGGTTTATTGATTGCCTTTGTATT 59.820 33.333 0.00 0.00 0.00 1.89
5241 5867 7.823799 CCTGGTTTATTGATTGCCTTTGTATTT 59.176 33.333 0.00 0.00 0.00 1.40
5242 5868 9.218440 CTGGTTTATTGATTGCCTTTGTATTTT 57.782 29.630 0.00 0.00 0.00 1.82
5243 5869 8.997323 TGGTTTATTGATTGCCTTTGTATTTTG 58.003 29.630 0.00 0.00 0.00 2.44
5244 5870 8.998377 GGTTTATTGATTGCCTTTGTATTTTGT 58.002 29.630 0.00 0.00 0.00 2.83
5245 5871 9.810231 GTTTATTGATTGCCTTTGTATTTTGTG 57.190 29.630 0.00 0.00 0.00 3.33
5246 5872 9.553064 TTTATTGATTGCCTTTGTATTTTGTGT 57.447 25.926 0.00 0.00 0.00 3.72
5247 5873 7.656707 ATTGATTGCCTTTGTATTTTGTGTC 57.343 32.000 0.00 0.00 0.00 3.67
5248 5874 6.154203 TGATTGCCTTTGTATTTTGTGTCA 57.846 33.333 0.00 0.00 0.00 3.58
5249 5875 6.577103 TGATTGCCTTTGTATTTTGTGTCAA 58.423 32.000 0.00 0.00 0.00 3.18
5250 5876 7.044181 TGATTGCCTTTGTATTTTGTGTCAAA 58.956 30.769 0.00 0.00 0.00 2.69
5251 5877 7.714377 TGATTGCCTTTGTATTTTGTGTCAAAT 59.286 29.630 0.00 0.00 31.08 2.32
5252 5878 7.856145 TTGCCTTTGTATTTTGTGTCAAATT 57.144 28.000 0.00 0.00 31.08 1.82
5253 5879 7.856145 TGCCTTTGTATTTTGTGTCAAATTT 57.144 28.000 0.00 0.00 31.08 1.82
5254 5880 8.273780 TGCCTTTGTATTTTGTGTCAAATTTT 57.726 26.923 0.00 0.00 31.08 1.82
5255 5881 8.180267 TGCCTTTGTATTTTGTGTCAAATTTTG 58.820 29.630 2.59 2.59 31.08 2.44
5256 5882 8.394121 GCCTTTGTATTTTGTGTCAAATTTTGA 58.606 29.630 7.74 7.74 37.33 2.69
5290 5916 9.549509 TTTAACTAACGAATGTTAATGCATGTC 57.450 29.630 0.00 0.00 39.95 3.06
5291 5917 6.735678 ACTAACGAATGTTAATGCATGTCA 57.264 33.333 0.00 0.14 39.95 3.58
5292 5918 6.542852 ACTAACGAATGTTAATGCATGTCAC 58.457 36.000 0.00 0.00 39.95 3.67
5293 5919 5.369685 AACGAATGTTAATGCATGTCACA 57.630 34.783 0.00 4.00 36.28 3.58
5294 5920 5.369685 ACGAATGTTAATGCATGTCACAA 57.630 34.783 0.00 0.00 0.00 3.33
5295 5921 5.767269 ACGAATGTTAATGCATGTCACAAA 58.233 33.333 0.00 0.00 0.00 2.83
5296 5922 6.212235 ACGAATGTTAATGCATGTCACAAAA 58.788 32.000 0.00 0.00 0.00 2.44
5297 5923 6.699204 ACGAATGTTAATGCATGTCACAAAAA 59.301 30.769 0.00 0.00 0.00 1.94
5356 5982 9.569167 CCAATGATAGAATATTTGATGACATGC 57.431 33.333 0.00 0.00 0.00 4.06
5370 5996 4.260139 TGACATGCATCAACATTTTGCT 57.740 36.364 0.00 0.00 37.28 3.91
5371 5997 5.388408 TGACATGCATCAACATTTTGCTA 57.612 34.783 0.00 0.00 37.28 3.49
5372 5998 5.404096 TGACATGCATCAACATTTTGCTAG 58.596 37.500 0.00 0.00 37.28 3.42
5373 5999 5.047872 TGACATGCATCAACATTTTGCTAGT 60.048 36.000 0.00 0.00 37.28 2.57
5374 6000 5.786311 ACATGCATCAACATTTTGCTAGTT 58.214 33.333 0.00 0.00 37.28 2.24
5375 6001 6.923012 ACATGCATCAACATTTTGCTAGTTA 58.077 32.000 0.00 0.00 37.28 2.24
5376 6002 7.377398 ACATGCATCAACATTTTGCTAGTTAA 58.623 30.769 0.00 0.00 37.28 2.01
5377 6003 7.871973 ACATGCATCAACATTTTGCTAGTTAAA 59.128 29.630 0.00 0.00 37.28 1.52
5378 6004 8.875803 CATGCATCAACATTTTGCTAGTTAAAT 58.124 29.630 0.00 0.00 37.28 1.40
5379 6005 8.464770 TGCATCAACATTTTGCTAGTTAAATC 57.535 30.769 0.00 0.00 37.28 2.17
5380 6006 8.306038 TGCATCAACATTTTGCTAGTTAAATCT 58.694 29.630 0.00 0.00 37.28 2.40
5381 6007 9.787532 GCATCAACATTTTGCTAGTTAAATCTA 57.212 29.630 0.00 0.00 33.61 1.98
5397 6023 8.980596 AGTTAAATCTATGATCAAAATTGGGCA 58.019 29.630 0.00 0.00 0.00 5.36
5398 6024 9.034544 GTTAAATCTATGATCAAAATTGGGCAC 57.965 33.333 0.00 0.00 0.00 5.01
5399 6025 6.795144 AATCTATGATCAAAATTGGGCACA 57.205 33.333 0.00 0.00 0.00 4.57
5400 6026 6.795144 ATCTATGATCAAAATTGGGCACAA 57.205 33.333 2.55 2.55 41.59 3.33
5401 6027 6.602410 TCTATGATCAAAATTGGGCACAAA 57.398 33.333 4.97 0.00 40.55 2.83
5402 6028 7.002250 TCTATGATCAAAATTGGGCACAAAA 57.998 32.000 4.97 0.00 40.55 2.44
5403 6029 7.622713 TCTATGATCAAAATTGGGCACAAAAT 58.377 30.769 4.97 0.00 40.55 1.82
5404 6030 8.756927 TCTATGATCAAAATTGGGCACAAAATA 58.243 29.630 4.97 0.00 40.55 1.40
5405 6031 7.614124 ATGATCAAAATTGGGCACAAAATAC 57.386 32.000 4.97 0.00 40.55 1.89
5406 6032 5.636965 TGATCAAAATTGGGCACAAAATACG 59.363 36.000 4.97 0.00 40.55 3.06
5407 6033 5.201713 TCAAAATTGGGCACAAAATACGA 57.798 34.783 4.97 0.00 40.55 3.43
5408 6034 5.601662 TCAAAATTGGGCACAAAATACGAA 58.398 33.333 4.97 0.00 40.55 3.85
5409 6035 5.694006 TCAAAATTGGGCACAAAATACGAAG 59.306 36.000 4.97 0.00 40.55 3.79
5410 6036 3.866883 ATTGGGCACAAAATACGAAGG 57.133 42.857 4.97 0.00 40.55 3.46
5411 6037 1.540267 TGGGCACAAAATACGAAGGG 58.460 50.000 0.00 0.00 0.00 3.95
5412 6038 1.074084 TGGGCACAAAATACGAAGGGA 59.926 47.619 0.00 0.00 0.00 4.20
5413 6039 1.471287 GGGCACAAAATACGAAGGGAC 59.529 52.381 0.00 0.00 0.00 4.46
5414 6040 1.471287 GGCACAAAATACGAAGGGACC 59.529 52.381 0.00 0.00 0.00 4.46
5415 6041 2.156098 GCACAAAATACGAAGGGACCA 58.844 47.619 0.00 0.00 0.00 4.02
5416 6042 2.554893 GCACAAAATACGAAGGGACCAA 59.445 45.455 0.00 0.00 0.00 3.67
5417 6043 3.192633 GCACAAAATACGAAGGGACCAAT 59.807 43.478 0.00 0.00 0.00 3.16
5418 6044 4.396790 GCACAAAATACGAAGGGACCAATA 59.603 41.667 0.00 0.00 0.00 1.90
5419 6045 5.106078 GCACAAAATACGAAGGGACCAATAA 60.106 40.000 0.00 0.00 0.00 1.40
5420 6046 6.570764 GCACAAAATACGAAGGGACCAATAAA 60.571 38.462 0.00 0.00 0.00 1.40
5421 6047 6.804783 CACAAAATACGAAGGGACCAATAAAC 59.195 38.462 0.00 0.00 0.00 2.01
5422 6048 6.071784 ACAAAATACGAAGGGACCAATAAACC 60.072 38.462 0.00 0.00 0.00 3.27
5423 6049 2.103537 ACGAAGGGACCAATAAACCG 57.896 50.000 0.00 0.00 0.00 4.44
5424 6050 1.339342 ACGAAGGGACCAATAAACCGG 60.339 52.381 0.00 0.00 0.00 5.28
5425 6051 1.758936 GAAGGGACCAATAAACCGGG 58.241 55.000 6.32 0.00 0.00 5.73
5426 6052 1.282738 GAAGGGACCAATAAACCGGGA 59.717 52.381 6.32 0.00 0.00 5.14
5427 6053 0.622136 AGGGACCAATAAACCGGGAC 59.378 55.000 6.32 0.00 0.00 4.46
5455 6081 1.197036 GTACCTCTTTGAAGCCGTTGC 59.803 52.381 0.00 0.00 37.95 4.17
5456 6082 1.207593 CCTCTTTGAAGCCGTTGCG 59.792 57.895 0.00 0.00 44.33 4.85
5528 6155 4.872691 CCAGCTAATCCGGCATTATTAGAG 59.127 45.833 19.63 12.58 37.72 2.43
5549 6176 7.745620 AGAGAAAATAATCAAAGTTGGTCGT 57.254 32.000 0.00 0.00 0.00 4.34
5550 6177 7.584987 AGAGAAAATAATCAAAGTTGGTCGTG 58.415 34.615 0.00 0.00 0.00 4.35
5551 6178 6.149633 AGAAAATAATCAAAGTTGGTCGTGC 58.850 36.000 0.00 0.00 0.00 5.34
5552 6179 3.740044 ATAATCAAAGTTGGTCGTGCG 57.260 42.857 0.00 0.00 0.00 5.34
5553 6180 1.588674 AATCAAAGTTGGTCGTGCGA 58.411 45.000 0.00 0.00 0.00 5.10
5554 6181 1.808411 ATCAAAGTTGGTCGTGCGAT 58.192 45.000 0.00 0.00 0.00 4.58
5555 6182 0.865111 TCAAAGTTGGTCGTGCGATG 59.135 50.000 0.00 0.00 0.00 3.84
5556 6183 0.110238 CAAAGTTGGTCGTGCGATGG 60.110 55.000 0.00 0.00 0.00 3.51
5557 6184 1.852067 AAAGTTGGTCGTGCGATGGC 61.852 55.000 0.00 0.00 40.52 4.40
5558 6185 3.799755 GTTGGTCGTGCGATGGCC 61.800 66.667 0.00 0.00 38.85 5.36
5559 6186 4.015406 TTGGTCGTGCGATGGCCT 62.015 61.111 3.32 0.00 38.85 5.19
5560 6187 3.545124 TTGGTCGTGCGATGGCCTT 62.545 57.895 3.32 0.00 38.85 4.35
5561 6188 3.499737 GGTCGTGCGATGGCCTTG 61.500 66.667 3.32 0.00 38.85 3.61
5562 6189 3.499737 GTCGTGCGATGGCCTTGG 61.500 66.667 3.32 0.00 38.85 3.61
5563 6190 3.700970 TCGTGCGATGGCCTTGGA 61.701 61.111 3.32 0.00 38.85 3.53
5564 6191 2.514592 CGTGCGATGGCCTTGGAT 60.515 61.111 3.32 0.00 38.85 3.41
5565 6192 2.114670 CGTGCGATGGCCTTGGATT 61.115 57.895 3.32 0.00 38.85 3.01
5566 6193 1.656818 CGTGCGATGGCCTTGGATTT 61.657 55.000 3.32 0.00 38.85 2.17
5567 6194 0.179129 GTGCGATGGCCTTGGATTTG 60.179 55.000 3.32 0.00 38.85 2.32
5568 6195 1.321805 TGCGATGGCCTTGGATTTGG 61.322 55.000 3.32 0.00 38.85 3.28
5569 6196 2.019897 GCGATGGCCTTGGATTTGGG 62.020 60.000 3.32 0.00 0.00 4.12
5570 6197 0.395586 CGATGGCCTTGGATTTGGGA 60.396 55.000 3.32 0.00 0.00 4.37
5571 6198 1.755265 CGATGGCCTTGGATTTGGGAT 60.755 52.381 3.32 0.00 0.00 3.85
5572 6199 1.966354 GATGGCCTTGGATTTGGGATC 59.034 52.381 3.32 0.00 0.00 3.36
5573 6200 0.709397 TGGCCTTGGATTTGGGATCA 59.291 50.000 3.32 0.00 0.00 2.92
5574 6201 1.342275 TGGCCTTGGATTTGGGATCAG 60.342 52.381 3.32 0.00 0.00 2.90
5575 6202 0.749049 GCCTTGGATTTGGGATCAGC 59.251 55.000 0.00 0.00 0.00 4.26
5576 6203 1.027357 CCTTGGATTTGGGATCAGCG 58.973 55.000 0.00 0.00 0.00 5.18
5577 6204 1.408683 CCTTGGATTTGGGATCAGCGA 60.409 52.381 0.00 0.00 0.00 4.93
5578 6205 1.945394 CTTGGATTTGGGATCAGCGAG 59.055 52.381 0.00 0.00 0.00 5.03
5579 6206 0.181114 TGGATTTGGGATCAGCGAGG 59.819 55.000 0.00 0.00 0.00 4.63
5580 6207 0.469917 GGATTTGGGATCAGCGAGGA 59.530 55.000 0.00 0.00 0.00 3.71
5581 6208 1.542108 GGATTTGGGATCAGCGAGGAG 60.542 57.143 0.00 0.00 0.00 3.69
5582 6209 0.471617 ATTTGGGATCAGCGAGGAGG 59.528 55.000 0.00 0.00 0.00 4.30
5583 6210 0.617535 TTTGGGATCAGCGAGGAGGA 60.618 55.000 0.00 0.00 0.00 3.71
5584 6211 1.330655 TTGGGATCAGCGAGGAGGAC 61.331 60.000 0.00 0.00 0.00 3.85
5585 6212 1.758514 GGGATCAGCGAGGAGGACA 60.759 63.158 0.00 0.00 0.00 4.02
5586 6213 1.739049 GGATCAGCGAGGAGGACAG 59.261 63.158 0.00 0.00 0.00 3.51
5587 6214 1.739049 GATCAGCGAGGAGGACAGG 59.261 63.158 0.00 0.00 0.00 4.00
5588 6215 1.000993 ATCAGCGAGGAGGACAGGT 59.999 57.895 0.00 0.00 0.00 4.00
5589 6216 1.040339 ATCAGCGAGGAGGACAGGTC 61.040 60.000 0.00 0.00 0.00 3.85
5590 6217 1.979155 CAGCGAGGAGGACAGGTCA 60.979 63.158 1.41 0.00 0.00 4.02
5591 6218 1.000993 AGCGAGGAGGACAGGTCAT 59.999 57.895 1.41 0.00 0.00 3.06
5592 6219 1.142748 GCGAGGAGGACAGGTCATG 59.857 63.158 1.41 0.00 0.00 3.07
5593 6220 1.819229 CGAGGAGGACAGGTCATGG 59.181 63.158 1.41 0.00 0.00 3.66
5594 6221 0.684479 CGAGGAGGACAGGTCATGGA 60.684 60.000 1.41 0.00 0.00 3.41
5595 6222 1.118838 GAGGAGGACAGGTCATGGAG 58.881 60.000 1.41 0.00 0.00 3.86
5596 6223 0.712979 AGGAGGACAGGTCATGGAGA 59.287 55.000 1.41 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 0.377203 GGAGAAAATAACGCAGGCGG 59.623 55.000 18.63 0.14 44.69 6.13
44 45 0.377203 GGGAGAAAATAACGCAGGCG 59.623 55.000 12.71 12.71 46.03 5.52
45 46 1.401905 CTGGGAGAAAATAACGCAGGC 59.598 52.381 0.00 0.00 39.66 4.85
46 47 1.401905 GCTGGGAGAAAATAACGCAGG 59.598 52.381 0.00 0.00 42.19 4.85
47 48 2.096496 CAGCTGGGAGAAAATAACGCAG 59.904 50.000 5.57 0.00 43.85 5.18
48 49 2.083774 CAGCTGGGAGAAAATAACGCA 58.916 47.619 5.57 0.00 0.00 5.24
49 50 2.084546 ACAGCTGGGAGAAAATAACGC 58.915 47.619 19.93 0.00 0.00 4.84
50 51 2.159517 GCACAGCTGGGAGAAAATAACG 60.160 50.000 23.23 0.00 0.00 3.18
51 52 2.164422 GGCACAGCTGGGAGAAAATAAC 59.836 50.000 23.23 0.00 0.00 1.89
218 232 7.114953 GCTCTTTTCAGTTTTATCTTTTTCGGG 59.885 37.037 0.00 0.00 0.00 5.14
221 235 8.561932 ACGCTCTTTTCAGTTTTATCTTTTTC 57.438 30.769 0.00 0.00 0.00 2.29
240 257 6.435428 CAACAAAAGGTATTTGTAACGCTCT 58.565 36.000 6.96 0.00 41.30 4.09
255 272 2.229784 CTCCTTGCTAGCCAACAAAAGG 59.770 50.000 18.67 18.67 36.36 3.11
309 326 4.047059 CACCAAAGGCGCTGCTGG 62.047 66.667 7.64 13.75 34.95 4.85
333 366 1.811266 CTTGATCTGTGACGGCCGG 60.811 63.158 31.76 11.50 0.00 6.13
334 367 1.078759 GACTTGATCTGTGACGGCCG 61.079 60.000 26.86 26.86 0.00 6.13
399 433 2.437359 ATGTTCTGCGGGCTCTGC 60.437 61.111 0.00 0.00 0.00 4.26
400 434 1.817099 GGATGTTCTGCGGGCTCTG 60.817 63.158 0.00 0.00 0.00 3.35
401 435 2.586792 GGATGTTCTGCGGGCTCT 59.413 61.111 0.00 0.00 0.00 4.09
413 455 4.733542 CGGTTTGGGGCGGGATGT 62.734 66.667 0.00 0.00 0.00 3.06
423 465 2.125991 AATGCATGCGCGGTTTGG 60.126 55.556 14.09 0.00 42.97 3.28
476 522 0.179163 GTGGGGTGTACTACGTACGC 60.179 60.000 16.72 8.72 45.37 4.42
485 531 2.047560 GTCTGCGGTGGGGTGTAC 60.048 66.667 0.00 0.00 0.00 2.90
491 540 4.394712 GTCAGGGTCTGCGGTGGG 62.395 72.222 0.00 0.00 0.00 4.61
499 548 2.363361 CCCGGGTAGTCAGGGTCT 59.637 66.667 14.18 0.00 40.27 3.85
677 732 1.272704 GGATGGGAAGCCCTTGAAACT 60.273 52.381 3.85 0.00 45.70 2.66
688 743 3.151906 CGGGGCTAGGATGGGAAG 58.848 66.667 0.00 0.00 0.00 3.46
721 776 2.789203 GATTCGTCACGTCGCTGGC 61.789 63.158 0.00 0.00 0.00 4.85
732 787 1.814169 GCCCCGTCTTGGATTCGTC 60.814 63.158 0.00 0.00 42.00 4.20
736 791 4.109675 CGGGCCCCGTCTTGGATT 62.110 66.667 18.66 0.00 42.73 3.01
802 858 2.900337 GGGCCTGCGGAATTACGG 60.900 66.667 12.95 0.00 0.00 4.02
852 908 2.202987 CGGAGAGAGGGCACATGC 60.203 66.667 0.00 0.00 41.14 4.06
880 936 3.591835 GAGAGAGAGGGAGCGCCG 61.592 72.222 2.29 0.00 33.83 6.46
881 937 2.123897 AGAGAGAGAGGGAGCGCC 60.124 66.667 2.29 0.00 0.00 6.53
882 938 1.152963 AGAGAGAGAGAGGGAGCGC 60.153 63.158 0.00 0.00 0.00 5.92
883 939 0.535102 GGAGAGAGAGAGAGGGAGCG 60.535 65.000 0.00 0.00 0.00 5.03
884 940 0.846693 AGGAGAGAGAGAGAGGGAGC 59.153 60.000 0.00 0.00 0.00 4.70
885 941 2.105477 CTGAGGAGAGAGAGAGAGGGAG 59.895 59.091 0.00 0.00 0.00 4.30
886 942 2.126882 CTGAGGAGAGAGAGAGAGGGA 58.873 57.143 0.00 0.00 0.00 4.20
887 943 1.846439 ACTGAGGAGAGAGAGAGAGGG 59.154 57.143 0.00 0.00 0.00 4.30
888 944 3.652057 AACTGAGGAGAGAGAGAGAGG 57.348 52.381 0.00 0.00 0.00 3.69
889 945 7.056635 AGATTTAACTGAGGAGAGAGAGAGAG 58.943 42.308 0.00 0.00 0.00 3.20
890 946 6.969043 AGATTTAACTGAGGAGAGAGAGAGA 58.031 40.000 0.00 0.00 0.00 3.10
891 947 7.467267 CGAAGATTTAACTGAGGAGAGAGAGAG 60.467 44.444 0.00 0.00 0.00 3.20
892 948 6.317642 CGAAGATTTAACTGAGGAGAGAGAGA 59.682 42.308 0.00 0.00 0.00 3.10
893 949 6.094881 ACGAAGATTTAACTGAGGAGAGAGAG 59.905 42.308 0.00 0.00 0.00 3.20
894 950 5.946972 ACGAAGATTTAACTGAGGAGAGAGA 59.053 40.000 0.00 0.00 0.00 3.10
895 951 6.094881 AGACGAAGATTTAACTGAGGAGAGAG 59.905 42.308 0.00 0.00 0.00 3.20
896 952 5.946972 AGACGAAGATTTAACTGAGGAGAGA 59.053 40.000 0.00 0.00 0.00 3.10
897 953 6.033341 CAGACGAAGATTTAACTGAGGAGAG 58.967 44.000 0.00 0.00 0.00 3.20
938 994 3.203040 AGAGAGAGAGAGAGAGAAAGGGG 59.797 52.174 0.00 0.00 0.00 4.79
939 995 4.164988 AGAGAGAGAGAGAGAGAGAAAGGG 59.835 50.000 0.00 0.00 0.00 3.95
943 999 4.164221 GGGAAGAGAGAGAGAGAGAGAGAA 59.836 50.000 0.00 0.00 0.00 2.87
1261 1331 2.359975 CCCCGTCAGGCCTTTGTC 60.360 66.667 0.00 0.00 35.76 3.18
1387 1457 1.342174 GTTGTCGTGGAGGTTGAGGTA 59.658 52.381 0.00 0.00 0.00 3.08
1388 1458 0.106149 GTTGTCGTGGAGGTTGAGGT 59.894 55.000 0.00 0.00 0.00 3.85
1396 1466 1.300620 TGAAGCCGTTGTCGTGGAG 60.301 57.895 0.00 0.00 35.01 3.86
1408 1478 1.452108 CCGGGATGAAGGTGAAGCC 60.452 63.158 0.00 0.00 37.58 4.35
1427 1497 1.995542 TCAGCCCCTTGAAGAAATCCT 59.004 47.619 0.00 0.00 0.00 3.24
1446 1516 3.991536 GACCTCCTTGAGCGCGGTC 62.992 68.421 30.17 30.17 37.57 4.79
1514 1584 0.815615 GGTGATCGATTGGCAGTCCC 60.816 60.000 0.00 0.00 0.00 4.46
1515 1585 0.107703 TGGTGATCGATTGGCAGTCC 60.108 55.000 0.00 0.00 0.00 3.85
1521 1591 2.939103 GGAGAAGTTGGTGATCGATTGG 59.061 50.000 0.00 0.00 0.00 3.16
1522 1592 2.604914 CGGAGAAGTTGGTGATCGATTG 59.395 50.000 0.00 0.00 0.00 2.67
1523 1593 2.893637 CGGAGAAGTTGGTGATCGATT 58.106 47.619 0.00 0.00 0.00 3.34
1524 1594 1.471676 GCGGAGAAGTTGGTGATCGAT 60.472 52.381 0.00 0.00 0.00 3.59
1527 1597 0.036388 TGGCGGAGAAGTTGGTGATC 60.036 55.000 0.00 0.00 0.00 2.92
1528 1598 0.400213 TTGGCGGAGAAGTTGGTGAT 59.600 50.000 0.00 0.00 0.00 3.06
1606 1676 0.254178 TTCCCTGCCAGATTGAGCTC 59.746 55.000 6.82 6.82 0.00 4.09
1621 1691 2.663196 CCCGGACAGTGAGTTCCC 59.337 66.667 0.73 0.00 0.00 3.97
1622 1692 2.047179 GCCCGGACAGTGAGTTCC 60.047 66.667 0.73 0.00 0.00 3.62
1666 1736 2.435586 CCAGAGCACCTCAAGCGG 60.436 66.667 0.00 0.00 37.01 5.52
1690 1763 2.093447 AGCCGGTGGTCTCTATTTTCTG 60.093 50.000 1.90 0.00 0.00 3.02
1691 1764 2.188817 AGCCGGTGGTCTCTATTTTCT 58.811 47.619 1.90 0.00 0.00 2.52
1692 1765 2.693267 AGCCGGTGGTCTCTATTTTC 57.307 50.000 1.90 0.00 0.00 2.29
1693 1766 2.304761 TGAAGCCGGTGGTCTCTATTTT 59.695 45.455 1.90 0.00 0.00 1.82
1695 1768 1.482593 CTGAAGCCGGTGGTCTCTATT 59.517 52.381 1.90 0.00 0.00 1.73
1697 1770 1.605058 GCTGAAGCCGGTGGTCTCTA 61.605 60.000 1.90 0.00 34.31 2.43
1698 1771 2.948720 GCTGAAGCCGGTGGTCTCT 61.949 63.158 1.90 0.00 34.31 3.10
1700 1773 4.379243 CGCTGAAGCCGGTGGTCT 62.379 66.667 1.90 0.00 37.91 3.85
1708 1781 0.876342 CTAATCGACCCGCTGAAGCC 60.876 60.000 0.00 0.00 37.91 4.35
1711 1784 0.535335 AAGCTAATCGACCCGCTGAA 59.465 50.000 5.12 0.00 32.22 3.02
1731 1804 1.361668 CCTTGGTCATCTTGGCGACG 61.362 60.000 0.00 0.00 32.74 5.12
1734 1807 2.409870 GGCCTTGGTCATCTTGGCG 61.410 63.158 0.00 0.00 44.07 5.69
1740 1813 1.648467 GCTTCGTGGCCTTGGTCATC 61.648 60.000 3.32 0.00 0.00 2.92
1741 1814 1.675641 GCTTCGTGGCCTTGGTCAT 60.676 57.895 3.32 0.00 0.00 3.06
1746 1819 2.949106 CACAGCTTCGTGGCCTTG 59.051 61.111 3.32 0.00 33.05 3.61
1778 1851 4.660938 GCAAGGGGCCGGTGAAGT 62.661 66.667 1.90 0.00 36.11 3.01
1823 1896 1.726853 GTCACGGAGACCCAAATCAG 58.273 55.000 0.00 0.00 41.56 2.90
1839 1912 2.425592 CCGGTGAGCTGGTTGTCA 59.574 61.111 0.00 0.00 36.39 3.58
1859 1932 3.997672 ACAAGACTGTCTGGCACTC 57.002 52.632 11.71 0.00 0.00 3.51
1868 1941 3.452627 AGACTTCAGGTTGACAAGACTGT 59.547 43.478 15.61 2.01 38.98 3.55
1898 1971 2.484287 ATTGTTCCCCAGGCTCACCG 62.484 60.000 0.00 0.00 42.76 4.94
1899 1972 0.251787 AATTGTTCCCCAGGCTCACC 60.252 55.000 0.00 0.00 0.00 4.02
1934 2007 0.402121 AGAGGGAGCAAAGTTGGGAC 59.598 55.000 0.00 0.00 0.00 4.46
1956 2029 1.707106 TACCCGTCCTGTCAACTTCA 58.293 50.000 0.00 0.00 0.00 3.02
1967 2040 4.157840 AGCAGAATTGATTTTTACCCGTCC 59.842 41.667 0.00 0.00 0.00 4.79
1969 2042 5.469479 CAAGCAGAATTGATTTTTACCCGT 58.531 37.500 0.00 0.00 28.63 5.28
2103 2179 0.033504 ATACAACGCCCGGCTGATAG 59.966 55.000 8.05 0.00 0.00 2.08
2111 2187 1.858458 CACTATCACATACAACGCCCG 59.142 52.381 0.00 0.00 0.00 6.13
2145 2221 3.120580 CCATTTTGGCAAAATTCAGCGAC 60.121 43.478 30.19 0.00 38.97 5.19
2199 2275 2.096069 CGTCTCAAGTGTGGCAATCTTG 60.096 50.000 19.92 19.92 39.59 3.02
2288 2364 9.696917 GATTGTTATTTGACAGATTGACCTTTT 57.303 29.630 0.00 0.00 0.00 2.27
2350 2426 3.088532 GGTTGCCATCAAGTATCACCAA 58.911 45.455 0.00 0.00 31.93 3.67
2351 2427 2.620367 GGGTTGCCATCAAGTATCACCA 60.620 50.000 0.00 0.00 31.93 4.17
2414 2490 2.430465 CAGGCTTAGTGTCATTGCTGT 58.570 47.619 0.00 0.00 0.00 4.40
2685 2761 1.879796 GCTTGGCTATATGGCTCGCTT 60.880 52.381 11.16 0.00 42.34 4.68
2829 2905 3.090037 GAGCTCACCCTTGTAGACAGTA 58.910 50.000 9.40 0.00 0.00 2.74
2959 3035 0.905357 AGCAGCGATACAAGGTTCCT 59.095 50.000 0.00 0.00 0.00 3.36
2970 3046 1.759445 AGACAGTATCCAAGCAGCGAT 59.241 47.619 0.00 0.00 0.00 4.58
3117 3193 1.872952 TCAACACCTCTTGCAACATCG 59.127 47.619 0.00 0.00 0.00 3.84
3165 3241 4.453819 GGTTTCAAGTCTCTGTGGATGAAG 59.546 45.833 0.00 0.00 0.00 3.02
3342 3418 8.845227 TCAGAAAACTGAAGCACAAAATATACA 58.155 29.630 0.00 0.00 0.00 2.29
3376 3452 7.132694 TGTGCTTGTCAATTGAACTGTATAG 57.867 36.000 10.35 1.69 0.00 1.31
3415 3491 8.703604 ATTCGGATACTATTTTGGATATGACG 57.296 34.615 0.00 0.00 0.00 4.35
3467 3543 7.472334 AAATCATCAGAACTAAATGGCAGTT 57.528 32.000 5.23 5.23 38.92 3.16
3565 3642 8.758829 TCAGATACACACACATTTTCTACCTAT 58.241 33.333 0.00 0.00 0.00 2.57
3599 3676 6.701145 TTGGTAGCACATTTTCAACAGTTA 57.299 33.333 0.00 0.00 0.00 2.24
3604 3681 6.257630 ACATGTTTTGGTAGCACATTTTCAAC 59.742 34.615 0.00 0.00 0.00 3.18
3649 3726 4.452825 AGCTCATCAGAGTTGATCATTGG 58.547 43.478 0.00 0.00 42.12 3.16
3652 3729 6.828788 ACATAAGCTCATCAGAGTTGATCAT 58.171 36.000 0.00 0.00 42.12 2.45
3658 3735 5.690464 AAGGACATAAGCTCATCAGAGTT 57.310 39.130 0.00 0.00 44.00 3.01
3673 3750 5.010282 GTCAAATGGACCAACTAAGGACAT 58.990 41.667 0.00 0.00 40.83 3.06
3735 3812 9.502091 AAGCAGTTAACTCAACATACATTTAGA 57.498 29.630 4.77 0.00 39.81 2.10
3748 3825 4.515191 CCAGTAAGCAAAGCAGTTAACTCA 59.485 41.667 4.77 0.00 0.00 3.41
3753 3830 4.714632 ACTTCCAGTAAGCAAAGCAGTTA 58.285 39.130 0.00 0.00 38.93 2.24
3770 3847 8.975439 CCGTGACATACTAATATTTGTACTTCC 58.025 37.037 11.21 3.79 0.00 3.46
3776 3854 7.866393 GCTACTCCGTGACATACTAATATTTGT 59.134 37.037 7.67 7.67 0.00 2.83
3843 3929 1.696063 AGCTCAGCTTTGCCAAAGAA 58.304 45.000 21.00 4.51 41.02 2.52
3849 3935 3.676646 CACAAAATTAGCTCAGCTTTGCC 59.323 43.478 3.31 0.00 40.44 4.52
3941 4097 0.873054 CTGACAGGAAGTTGCTGCAG 59.127 55.000 22.83 23.22 39.63 4.41
4015 4171 3.099905 TGACTCAGATCACTAACTGGGG 58.900 50.000 0.00 0.00 38.74 4.96
4099 4255 9.061610 CGCAAAAGATGTTAGGTTTTAGTTATG 57.938 33.333 0.00 0.00 0.00 1.90
4223 4380 0.471617 GGTGCATGCTATCCTCAGGT 59.528 55.000 20.33 0.00 0.00 4.00
4436 4593 1.490490 TCTGCAGGTTTCCACACTTCT 59.510 47.619 15.13 0.00 0.00 2.85
4451 4608 0.247460 CGTCTGAATCTGGGTCTGCA 59.753 55.000 0.00 0.00 0.00 4.41
4484 4641 1.293179 CAGCGTCATGTCCAGGTCA 59.707 57.895 0.00 0.00 0.00 4.02
4574 4731 1.883084 GGTGTTATCCAGGCTCGCG 60.883 63.158 0.00 0.00 0.00 5.87
4662 4819 2.781300 CTTCTGGCTTTCGAGCGC 59.219 61.111 0.00 0.00 35.24 5.92
4667 4824 2.079158 TCATCTTGCTTCTGGCTTTCG 58.921 47.619 0.00 0.00 42.39 3.46
4762 4949 1.293818 CATGGCATGGCAGCACAAA 59.706 52.632 27.02 1.49 35.83 2.83
4804 4991 6.769134 TTCTCGAGTAAAGACCACATCATA 57.231 37.500 13.13 0.00 0.00 2.15
4843 5033 4.187056 GCACCGAGCAGTTAGTCC 57.813 61.111 0.00 0.00 44.79 3.85
4981 5179 3.155861 AACGACCACACCACCGGA 61.156 61.111 9.46 0.00 0.00 5.14
4983 5181 0.530211 TAACAACGACCACACCACCG 60.530 55.000 0.00 0.00 0.00 4.94
4986 5184 3.747854 TGTATAACAACGACCACACCA 57.252 42.857 0.00 0.00 0.00 4.17
4987 5185 4.093850 GGATTGTATAACAACGACCACACC 59.906 45.833 0.00 0.00 41.40 4.16
5016 5214 4.219115 GAGTCATGATAGTCCCAGGAAGA 58.781 47.826 0.00 0.00 0.00 2.87
5036 5240 4.440880 CTCCTCAAAAGCTACCTCATGAG 58.559 47.826 16.24 16.24 35.27 2.90
5037 5241 3.198635 CCTCCTCAAAAGCTACCTCATGA 59.801 47.826 0.00 0.00 0.00 3.07
5040 5244 1.279271 GCCTCCTCAAAAGCTACCTCA 59.721 52.381 0.00 0.00 0.00 3.86
5041 5245 1.407575 GGCCTCCTCAAAAGCTACCTC 60.408 57.143 0.00 0.00 0.00 3.85
5042 5246 0.621082 GGCCTCCTCAAAAGCTACCT 59.379 55.000 0.00 0.00 0.00 3.08
5043 5247 0.621082 AGGCCTCCTCAAAAGCTACC 59.379 55.000 0.00 0.00 0.00 3.18
5044 5248 2.420269 GGTAGGCCTCCTCAAAAGCTAC 60.420 54.545 9.68 0.00 34.61 3.58
5046 5250 0.621082 GGTAGGCCTCCTCAAAAGCT 59.379 55.000 9.68 0.00 34.61 3.74
5047 5251 0.621082 AGGTAGGCCTCCTCAAAAGC 59.379 55.000 9.68 0.00 42.67 3.51
5058 5262 4.941873 CCGAATAATTAATGGAGGTAGGCC 59.058 45.833 0.00 0.00 0.00 5.19
5066 5684 5.888724 TGAACCAAGCCGAATAATTAATGGA 59.111 36.000 5.46 0.00 0.00 3.41
5072 5690 3.782889 GCTGAACCAAGCCGAATAATT 57.217 42.857 0.00 0.00 37.20 1.40
5083 5701 1.070786 GGTGAGACGGCTGAACCAA 59.929 57.895 13.79 0.00 39.03 3.67
5108 5729 0.952280 GTCTATCCGCTCCGTGATCA 59.048 55.000 0.00 0.00 0.00 2.92
5188 5814 1.476891 GTAGCACACTACTAGCTGCCA 59.523 52.381 0.00 0.00 44.61 4.92
5189 5815 2.211353 GTAGCACACTACTAGCTGCC 57.789 55.000 0.00 0.00 44.61 4.85
5190 5816 1.751924 AGGTAGCACACTACTAGCTGC 59.248 52.381 0.00 0.00 46.77 5.25
5191 5817 3.487711 CGAAGGTAGCACACTACTAGCTG 60.488 52.174 0.00 0.00 45.24 4.24
5194 5820 3.065095 GGACGAAGGTAGCACACTACTAG 59.935 52.174 3.47 0.00 46.77 2.57
5195 5821 3.012518 GGACGAAGGTAGCACACTACTA 58.987 50.000 3.47 0.00 46.77 1.82
5196 5822 1.817447 GGACGAAGGTAGCACACTACT 59.183 52.381 3.47 0.00 46.77 2.57
5197 5823 1.817447 AGGACGAAGGTAGCACACTAC 59.183 52.381 0.00 0.00 46.85 2.73
5199 5825 0.603569 CAGGACGAAGGTAGCACACT 59.396 55.000 0.00 0.00 0.00 3.55
5200 5826 0.389948 CCAGGACGAAGGTAGCACAC 60.390 60.000 0.00 0.00 0.00 3.82
5201 5827 0.830444 ACCAGGACGAAGGTAGCACA 60.830 55.000 0.00 0.00 36.07 4.57
5202 5828 0.320697 AACCAGGACGAAGGTAGCAC 59.679 55.000 0.00 0.00 37.07 4.40
5203 5829 1.053424 AAACCAGGACGAAGGTAGCA 58.947 50.000 0.00 0.00 37.07 3.49
5204 5830 3.538634 ATAAACCAGGACGAAGGTAGC 57.461 47.619 0.00 0.00 37.07 3.58
5205 5831 5.080969 TCAATAAACCAGGACGAAGGTAG 57.919 43.478 0.00 0.00 37.07 3.18
5206 5832 5.687166 ATCAATAAACCAGGACGAAGGTA 57.313 39.130 0.00 0.00 37.07 3.08
5207 5833 4.569719 ATCAATAAACCAGGACGAAGGT 57.430 40.909 0.00 0.00 40.61 3.50
5208 5834 4.438744 GCAATCAATAAACCAGGACGAAGG 60.439 45.833 0.00 0.00 0.00 3.46
5209 5835 4.438744 GGCAATCAATAAACCAGGACGAAG 60.439 45.833 0.00 0.00 0.00 3.79
5210 5836 3.442273 GGCAATCAATAAACCAGGACGAA 59.558 43.478 0.00 0.00 0.00 3.85
5211 5837 3.013921 GGCAATCAATAAACCAGGACGA 58.986 45.455 0.00 0.00 0.00 4.20
5212 5838 3.016736 AGGCAATCAATAAACCAGGACG 58.983 45.455 0.00 0.00 0.00 4.79
5213 5839 5.170748 CAAAGGCAATCAATAAACCAGGAC 58.829 41.667 0.00 0.00 0.00 3.85
5214 5840 4.837860 ACAAAGGCAATCAATAAACCAGGA 59.162 37.500 0.00 0.00 0.00 3.86
5215 5841 5.151297 ACAAAGGCAATCAATAAACCAGG 57.849 39.130 0.00 0.00 0.00 4.45
5216 5842 8.776376 AAATACAAAGGCAATCAATAAACCAG 57.224 30.769 0.00 0.00 0.00 4.00
5217 5843 8.997323 CAAAATACAAAGGCAATCAATAAACCA 58.003 29.630 0.00 0.00 0.00 3.67
5218 5844 8.998377 ACAAAATACAAAGGCAATCAATAAACC 58.002 29.630 0.00 0.00 0.00 3.27
5219 5845 9.810231 CACAAAATACAAAGGCAATCAATAAAC 57.190 29.630 0.00 0.00 0.00 2.01
5220 5846 9.553064 ACACAAAATACAAAGGCAATCAATAAA 57.447 25.926 0.00 0.00 0.00 1.40
5221 5847 9.202273 GACACAAAATACAAAGGCAATCAATAA 57.798 29.630 0.00 0.00 0.00 1.40
5222 5848 8.363390 TGACACAAAATACAAAGGCAATCAATA 58.637 29.630 0.00 0.00 0.00 1.90
5223 5849 7.215789 TGACACAAAATACAAAGGCAATCAAT 58.784 30.769 0.00 0.00 0.00 2.57
5224 5850 6.577103 TGACACAAAATACAAAGGCAATCAA 58.423 32.000 0.00 0.00 0.00 2.57
5225 5851 6.154203 TGACACAAAATACAAAGGCAATCA 57.846 33.333 0.00 0.00 0.00 2.57
5226 5852 7.475771 TTTGACACAAAATACAAAGGCAATC 57.524 32.000 0.00 0.00 0.00 2.67
5227 5853 8.449251 AATTTGACACAAAATACAAAGGCAAT 57.551 26.923 0.00 0.00 36.07 3.56
5228 5854 7.856145 AATTTGACACAAAATACAAAGGCAA 57.144 28.000 0.00 0.00 36.07 4.52
5229 5855 7.856145 AAATTTGACACAAAATACAAAGGCA 57.144 28.000 0.00 0.00 36.07 4.75
5230 5856 8.394121 TCAAAATTTGACACAAAATACAAAGGC 58.606 29.630 4.03 0.00 36.07 4.35
5264 5890 9.549509 GACATGCATTAACATTCGTTAGTTAAA 57.450 29.630 0.00 0.32 41.76 1.52
5265 5891 8.722394 TGACATGCATTAACATTCGTTAGTTAA 58.278 29.630 0.00 9.97 42.39 2.01
5266 5892 8.172484 GTGACATGCATTAACATTCGTTAGTTA 58.828 33.333 0.00 0.00 38.79 2.24
5267 5893 7.021196 GTGACATGCATTAACATTCGTTAGTT 58.979 34.615 0.00 0.00 38.79 2.24
5268 5894 6.148645 TGTGACATGCATTAACATTCGTTAGT 59.851 34.615 0.00 0.00 38.79 2.24
5269 5895 6.541969 TGTGACATGCATTAACATTCGTTAG 58.458 36.000 0.00 0.00 38.79 2.34
5270 5896 6.487689 TGTGACATGCATTAACATTCGTTA 57.512 33.333 0.00 0.00 36.52 3.18
5271 5897 5.369685 TGTGACATGCATTAACATTCGTT 57.630 34.783 0.00 0.00 39.24 3.85
5272 5898 5.369685 TTGTGACATGCATTAACATTCGT 57.630 34.783 0.00 0.00 0.00 3.85
5273 5899 6.687653 TTTTGTGACATGCATTAACATTCG 57.312 33.333 0.00 0.00 0.00 3.34
5330 5956 9.569167 GCATGTCATCAAATATTCTATCATTGG 57.431 33.333 0.00 0.00 0.00 3.16
5348 5974 4.827692 AGCAAAATGTTGATGCATGTCAT 58.172 34.783 2.46 2.88 42.45 3.06
5349 5975 4.260139 AGCAAAATGTTGATGCATGTCA 57.740 36.364 2.46 0.00 42.45 3.58
5350 5976 5.404946 ACTAGCAAAATGTTGATGCATGTC 58.595 37.500 2.46 0.00 42.45 3.06
5351 5977 5.395682 ACTAGCAAAATGTTGATGCATGT 57.604 34.783 2.46 0.00 42.45 3.21
5352 5978 7.815398 TTAACTAGCAAAATGTTGATGCATG 57.185 32.000 2.46 0.00 42.45 4.06
5353 5979 9.090692 GATTTAACTAGCAAAATGTTGATGCAT 57.909 29.630 0.00 0.00 42.45 3.96
5354 5980 8.306038 AGATTTAACTAGCAAAATGTTGATGCA 58.694 29.630 0.00 0.00 42.45 3.96
5355 5981 8.693542 AGATTTAACTAGCAAAATGTTGATGC 57.306 30.769 0.00 0.00 36.83 3.91
5371 5997 8.980596 TGCCCAATTTTGATCATAGATTTAACT 58.019 29.630 0.00 0.00 0.00 2.24
5372 5998 9.034544 GTGCCCAATTTTGATCATAGATTTAAC 57.965 33.333 0.00 0.00 0.00 2.01
5373 5999 8.756927 TGTGCCCAATTTTGATCATAGATTTAA 58.243 29.630 0.00 0.00 0.00 1.52
5374 6000 8.303780 TGTGCCCAATTTTGATCATAGATTTA 57.696 30.769 0.00 0.00 0.00 1.40
5375 6001 7.185318 TGTGCCCAATTTTGATCATAGATTT 57.815 32.000 0.00 0.00 0.00 2.17
5376 6002 6.795144 TGTGCCCAATTTTGATCATAGATT 57.205 33.333 0.00 0.00 0.00 2.40
5377 6003 6.795144 TTGTGCCCAATTTTGATCATAGAT 57.205 33.333 0.00 0.00 0.00 1.98
5378 6004 6.602410 TTTGTGCCCAATTTTGATCATAGA 57.398 33.333 0.00 0.00 0.00 1.98
5379 6005 7.852971 ATTTTGTGCCCAATTTTGATCATAG 57.147 32.000 0.00 0.00 0.00 2.23
5380 6006 7.490725 CGTATTTTGTGCCCAATTTTGATCATA 59.509 33.333 0.00 0.00 0.00 2.15
5381 6007 6.313411 CGTATTTTGTGCCCAATTTTGATCAT 59.687 34.615 0.00 0.00 0.00 2.45
5382 6008 5.636965 CGTATTTTGTGCCCAATTTTGATCA 59.363 36.000 0.00 0.00 0.00 2.92
5383 6009 5.866633 TCGTATTTTGTGCCCAATTTTGATC 59.133 36.000 0.00 0.00 0.00 2.92
5384 6010 5.788450 TCGTATTTTGTGCCCAATTTTGAT 58.212 33.333 0.00 0.00 0.00 2.57
5385 6011 5.201713 TCGTATTTTGTGCCCAATTTTGA 57.798 34.783 0.00 0.00 0.00 2.69
5386 6012 5.107143 CCTTCGTATTTTGTGCCCAATTTTG 60.107 40.000 0.00 0.00 0.00 2.44
5387 6013 4.994217 CCTTCGTATTTTGTGCCCAATTTT 59.006 37.500 0.00 0.00 0.00 1.82
5388 6014 4.562552 CCCTTCGTATTTTGTGCCCAATTT 60.563 41.667 0.00 0.00 0.00 1.82
5389 6015 3.056179 CCCTTCGTATTTTGTGCCCAATT 60.056 43.478 0.00 0.00 0.00 2.32
5390 6016 2.495669 CCCTTCGTATTTTGTGCCCAAT 59.504 45.455 0.00 0.00 0.00 3.16
5391 6017 1.889829 CCCTTCGTATTTTGTGCCCAA 59.110 47.619 0.00 0.00 0.00 4.12
5392 6018 1.074084 TCCCTTCGTATTTTGTGCCCA 59.926 47.619 0.00 0.00 0.00 5.36
5393 6019 1.471287 GTCCCTTCGTATTTTGTGCCC 59.529 52.381 0.00 0.00 0.00 5.36
5394 6020 1.471287 GGTCCCTTCGTATTTTGTGCC 59.529 52.381 0.00 0.00 0.00 5.01
5395 6021 2.156098 TGGTCCCTTCGTATTTTGTGC 58.844 47.619 0.00 0.00 0.00 4.57
5396 6022 6.503589 TTATTGGTCCCTTCGTATTTTGTG 57.496 37.500 0.00 0.00 0.00 3.33
5397 6023 6.071784 GGTTTATTGGTCCCTTCGTATTTTGT 60.072 38.462 0.00 0.00 0.00 2.83
5398 6024 6.327154 GGTTTATTGGTCCCTTCGTATTTTG 58.673 40.000 0.00 0.00 0.00 2.44
5399 6025 5.124297 CGGTTTATTGGTCCCTTCGTATTTT 59.876 40.000 0.00 0.00 0.00 1.82
5400 6026 4.637091 CGGTTTATTGGTCCCTTCGTATTT 59.363 41.667 0.00 0.00 0.00 1.40
5401 6027 4.193865 CGGTTTATTGGTCCCTTCGTATT 58.806 43.478 0.00 0.00 0.00 1.89
5402 6028 3.432608 CCGGTTTATTGGTCCCTTCGTAT 60.433 47.826 0.00 0.00 0.00 3.06
5403 6029 2.093553 CCGGTTTATTGGTCCCTTCGTA 60.094 50.000 0.00 0.00 0.00 3.43
5404 6030 1.339342 CCGGTTTATTGGTCCCTTCGT 60.339 52.381 0.00 0.00 0.00 3.85
5405 6031 1.375551 CCGGTTTATTGGTCCCTTCG 58.624 55.000 0.00 0.00 0.00 3.79
5406 6032 1.282738 TCCCGGTTTATTGGTCCCTTC 59.717 52.381 0.00 0.00 0.00 3.46
5407 6033 1.005097 GTCCCGGTTTATTGGTCCCTT 59.995 52.381 0.00 0.00 0.00 3.95
5408 6034 0.622136 GTCCCGGTTTATTGGTCCCT 59.378 55.000 0.00 0.00 0.00 4.20
5409 6035 0.745486 CGTCCCGGTTTATTGGTCCC 60.745 60.000 0.00 0.00 0.00 4.46
5410 6036 0.745486 CCGTCCCGGTTTATTGGTCC 60.745 60.000 0.00 0.00 42.73 4.46
5411 6037 2.771435 CCGTCCCGGTTTATTGGTC 58.229 57.895 0.00 0.00 42.73 4.02
5416 6042 7.862105 AGGTACTACTTCCGTCCCGGTTTAT 62.862 48.000 0.00 0.00 43.20 1.40
5417 6043 6.639676 AGGTACTACTTCCGTCCCGGTTTA 62.640 50.000 0.00 0.00 43.20 2.01
5418 6044 5.974546 AGGTACTACTTCCGTCCCGGTTT 62.975 52.174 0.00 0.00 43.20 3.27
5419 6045 4.547873 AGGTACTACTTCCGTCCCGGTT 62.548 54.545 0.00 0.00 43.20 4.44
5420 6046 3.080495 AGGTACTACTTCCGTCCCGGT 62.080 57.143 0.00 0.00 43.20 5.28
5421 6047 0.394899 AGGTACTACTTCCGTCCCGG 60.395 60.000 0.00 0.00 43.91 5.73
5422 6048 1.020437 GAGGTACTACTTCCGTCCCG 58.980 60.000 0.00 0.00 41.55 5.14
5423 6049 2.433662 AGAGGTACTACTTCCGTCCC 57.566 55.000 0.00 0.00 41.55 4.46
5424 6050 3.760684 TCAAAGAGGTACTACTTCCGTCC 59.239 47.826 0.00 0.00 41.55 4.79
5425 6051 5.382618 TTCAAAGAGGTACTACTTCCGTC 57.617 43.478 0.00 0.00 41.55 4.79
5426 6052 4.321824 GCTTCAAAGAGGTACTACTTCCGT 60.322 45.833 0.00 0.00 41.55 4.69
5427 6053 4.174762 GCTTCAAAGAGGTACTACTTCCG 58.825 47.826 0.00 0.00 41.55 4.30
5428 6054 4.505808 GGCTTCAAAGAGGTACTACTTCC 58.494 47.826 0.00 0.00 41.55 3.46
5429 6055 4.174762 CGGCTTCAAAGAGGTACTACTTC 58.825 47.826 0.00 0.00 41.55 3.01
5430 6056 3.577415 ACGGCTTCAAAGAGGTACTACTT 59.423 43.478 0.00 0.00 41.55 2.24
5431 6057 3.163467 ACGGCTTCAAAGAGGTACTACT 58.837 45.455 0.00 0.00 41.55 2.57
5432 6058 3.589495 ACGGCTTCAAAGAGGTACTAC 57.411 47.619 0.00 0.00 41.55 2.73
5433 6059 3.863400 GCAACGGCTTCAAAGAGGTACTA 60.863 47.826 0.00 0.00 36.07 1.82
5434 6060 3.128698 GCAACGGCTTCAAAGAGGTACT 61.129 50.000 0.00 0.00 38.39 2.73
5435 6061 1.197036 GCAACGGCTTCAAAGAGGTAC 59.803 52.381 0.00 0.00 36.96 3.34
5436 6062 1.519408 GCAACGGCTTCAAAGAGGTA 58.481 50.000 0.00 0.00 36.96 3.08
5437 6063 1.507141 CGCAACGGCTTCAAAGAGGT 61.507 55.000 0.00 0.00 38.10 3.85
5438 6064 1.207593 CGCAACGGCTTCAAAGAGG 59.792 57.895 0.00 0.00 38.10 3.69
5439 6065 1.207593 CCGCAACGGCTTCAAAGAG 59.792 57.895 0.00 0.00 41.17 2.85
5440 6066 3.339731 CCGCAACGGCTTCAAAGA 58.660 55.556 0.00 0.00 41.17 2.52
5469 6095 2.815211 GCGATGCTCACTGCCGAA 60.815 61.111 0.00 0.00 42.00 4.30
5472 6098 2.435586 AGTGCGATGCTCACTGCC 60.436 61.111 0.00 0.00 42.63 4.85
5485 6111 0.514691 CGACCAGCTGAAAAGAGTGC 59.485 55.000 17.39 0.00 0.00 4.40
5488 6114 2.536718 CTGGCGACCAGCTGAAAAGAG 61.537 57.143 17.39 0.00 45.13 2.85
5528 6155 5.059221 CGCACGACCAACTTTGATTATTTTC 59.941 40.000 0.00 0.00 0.00 2.29
5536 6163 0.865111 CATCGCACGACCAACTTTGA 59.135 50.000 0.00 0.00 0.00 2.69
5537 6164 0.110238 CCATCGCACGACCAACTTTG 60.110 55.000 0.00 0.00 0.00 2.77
5548 6175 0.179129 CAAATCCAAGGCCATCGCAC 60.179 55.000 5.01 0.00 36.38 5.34
5549 6176 1.321805 CCAAATCCAAGGCCATCGCA 61.322 55.000 5.01 0.00 36.38 5.10
5550 6177 1.438814 CCAAATCCAAGGCCATCGC 59.561 57.895 5.01 0.00 0.00 4.58
5551 6178 0.395586 TCCCAAATCCAAGGCCATCG 60.396 55.000 5.01 0.00 0.00 3.84
5552 6179 1.966354 GATCCCAAATCCAAGGCCATC 59.034 52.381 5.01 0.00 0.00 3.51
5553 6180 1.291637 TGATCCCAAATCCAAGGCCAT 59.708 47.619 5.01 0.00 0.00 4.40
5554 6181 0.709397 TGATCCCAAATCCAAGGCCA 59.291 50.000 5.01 0.00 0.00 5.36
5555 6182 1.406903 CTGATCCCAAATCCAAGGCC 58.593 55.000 0.00 0.00 0.00 5.19
5556 6183 0.749049 GCTGATCCCAAATCCAAGGC 59.251 55.000 0.00 0.00 0.00 4.35
5557 6184 1.027357 CGCTGATCCCAAATCCAAGG 58.973 55.000 0.00 0.00 0.00 3.61
5558 6185 1.945394 CTCGCTGATCCCAAATCCAAG 59.055 52.381 0.00 0.00 0.00 3.61
5559 6186 1.408683 CCTCGCTGATCCCAAATCCAA 60.409 52.381 0.00 0.00 0.00 3.53
5560 6187 0.181114 CCTCGCTGATCCCAAATCCA 59.819 55.000 0.00 0.00 0.00 3.41
5561 6188 0.469917 TCCTCGCTGATCCCAAATCC 59.530 55.000 0.00 0.00 0.00 3.01
5562 6189 1.542108 CCTCCTCGCTGATCCCAAATC 60.542 57.143 0.00 0.00 0.00 2.17
5563 6190 0.471617 CCTCCTCGCTGATCCCAAAT 59.528 55.000 0.00 0.00 0.00 2.32
5564 6191 0.617535 TCCTCCTCGCTGATCCCAAA 60.618 55.000 0.00 0.00 0.00 3.28
5565 6192 1.001631 TCCTCCTCGCTGATCCCAA 59.998 57.895 0.00 0.00 0.00 4.12
5566 6193 1.758514 GTCCTCCTCGCTGATCCCA 60.759 63.158 0.00 0.00 0.00 4.37
5567 6194 1.743321 CTGTCCTCCTCGCTGATCCC 61.743 65.000 0.00 0.00 0.00 3.85
5568 6195 1.739049 CTGTCCTCCTCGCTGATCC 59.261 63.158 0.00 0.00 0.00 3.36
5569 6196 1.040339 ACCTGTCCTCCTCGCTGATC 61.040 60.000 0.00 0.00 0.00 2.92
5570 6197 1.000993 ACCTGTCCTCCTCGCTGAT 59.999 57.895 0.00 0.00 0.00 2.90
5571 6198 1.679305 GACCTGTCCTCCTCGCTGA 60.679 63.158 0.00 0.00 0.00 4.26
5572 6199 1.326213 ATGACCTGTCCTCCTCGCTG 61.326 60.000 0.00 0.00 0.00 5.18
5573 6200 1.000993 ATGACCTGTCCTCCTCGCT 59.999 57.895 0.00 0.00 0.00 4.93
5574 6201 1.142748 CATGACCTGTCCTCCTCGC 59.857 63.158 0.00 0.00 0.00 5.03
5575 6202 0.684479 TCCATGACCTGTCCTCCTCG 60.684 60.000 0.00 0.00 0.00 4.63
5576 6203 1.118838 CTCCATGACCTGTCCTCCTC 58.881 60.000 0.00 0.00 0.00 3.71
5577 6204 0.712979 TCTCCATGACCTGTCCTCCT 59.287 55.000 0.00 0.00 0.00 3.69
5578 6205 1.118838 CTCTCCATGACCTGTCCTCC 58.881 60.000 0.00 0.00 0.00 4.30
5579 6206 1.754226 GACTCTCCATGACCTGTCCTC 59.246 57.143 0.00 0.00 0.00 3.71
5580 6207 1.077828 TGACTCTCCATGACCTGTCCT 59.922 52.381 0.00 0.00 0.00 3.85
5581 6208 1.561643 TGACTCTCCATGACCTGTCC 58.438 55.000 0.00 0.00 0.00 4.02
5582 6209 3.196469 TGATTGACTCTCCATGACCTGTC 59.804 47.826 0.00 0.00 0.00 3.51
5583 6210 3.176411 TGATTGACTCTCCATGACCTGT 58.824 45.455 0.00 0.00 0.00 4.00
5584 6211 3.900966 TGATTGACTCTCCATGACCTG 57.099 47.619 0.00 0.00 0.00 4.00
5585 6212 4.916041 TTTGATTGACTCTCCATGACCT 57.084 40.909 0.00 0.00 0.00 3.85
5586 6213 4.578105 GGATTTGATTGACTCTCCATGACC 59.422 45.833 0.00 0.00 0.00 4.02
5587 6214 4.578105 GGGATTTGATTGACTCTCCATGAC 59.422 45.833 0.00 0.00 0.00 3.06
5588 6215 4.385643 GGGGATTTGATTGACTCTCCATGA 60.386 45.833 0.00 0.00 0.00 3.07
5589 6216 3.887716 GGGGATTTGATTGACTCTCCATG 59.112 47.826 0.00 0.00 0.00 3.66
5590 6217 3.117360 GGGGGATTTGATTGACTCTCCAT 60.117 47.826 0.00 0.00 29.22 3.41
5591 6218 2.242196 GGGGGATTTGATTGACTCTCCA 59.758 50.000 0.00 0.00 29.22 3.86
5592 6219 2.242196 TGGGGGATTTGATTGACTCTCC 59.758 50.000 0.00 0.00 0.00 3.71
5593 6220 3.652057 TGGGGGATTTGATTGACTCTC 57.348 47.619 0.00 0.00 0.00 3.20
5594 6221 3.270433 ACATGGGGGATTTGATTGACTCT 59.730 43.478 0.00 0.00 0.00 3.24
5595 6222 3.635591 ACATGGGGGATTTGATTGACTC 58.364 45.455 0.00 0.00 0.00 3.36
5596 6223 3.763557 ACATGGGGGATTTGATTGACT 57.236 42.857 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.