Multiple sequence alignment - TraesCS4D01G050100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G050100 chr4D 100.000 3693 0 0 1363 5055 25695632 25691940 0.000000e+00 6820.0
1 TraesCS4D01G050100 chr4D 100.000 1116 0 0 1 1116 25696994 25695879 0.000000e+00 2061.0
2 TraesCS4D01G050100 chr4D 85.417 1104 66 37 1869 2947 5684301 5685334 0.000000e+00 1059.0
3 TraesCS4D01G050100 chr4D 90.807 805 29 6 3580 4350 5685337 5686130 0.000000e+00 1035.0
4 TraesCS4D01G050100 chr4D 94.484 417 15 3 4511 4922 5686145 5686558 1.990000e-178 636.0
5 TraesCS4D01G050100 chr4D 83.799 358 33 15 1367 1703 5683842 5684195 2.940000e-82 316.0
6 TraesCS4D01G050100 chr4D 97.794 136 3 0 4920 5055 5687221 5687356 8.460000e-58 235.0
7 TraesCS4D01G050100 chr4B 96.623 2961 37 20 1363 4281 38028215 38025276 0.000000e+00 4855.0
8 TraesCS4D01G050100 chr4B 96.266 616 16 3 502 1116 38028877 38028268 0.000000e+00 1003.0
9 TraesCS4D01G050100 chr4B 93.849 569 34 1 1 569 38029420 38028853 0.000000e+00 856.0
10 TraesCS4D01G050100 chr4B 86.213 544 33 12 3600 4103 9948276 9948817 7.400000e-153 551.0
11 TraesCS4D01G050100 chr4B 80.844 616 32 32 4335 4922 9949574 9950131 6.090000e-109 405.0
12 TraesCS4D01G050100 chr4B 99.265 136 1 0 4920 5055 9950761 9950896 3.910000e-61 246.0
13 TraesCS4D01G050100 chr4B 91.875 160 3 3 4381 4533 38024647 38024491 1.100000e-51 215.0
14 TraesCS4D01G050100 chr4B 97.087 103 3 0 2540 2642 9948089 9947987 1.870000e-39 174.0
15 TraesCS4D01G050100 chr7D 94.092 2945 84 25 1363 4257 32609533 32606629 0.000000e+00 4392.0
16 TraesCS4D01G050100 chr7D 93.000 500 25 4 1 494 32620374 32619879 0.000000e+00 721.0
17 TraesCS4D01G050100 chr7D 87.879 363 4 13 774 1116 32609923 32609581 1.710000e-104 390.0
18 TraesCS4D01G050100 chr7D 88.274 307 10 9 478 759 32611159 32610854 1.350000e-90 344.0
19 TraesCS4D01G050100 chr7D 81.276 486 26 23 4441 4922 32606107 32605683 2.920000e-87 333.0
20 TraesCS4D01G050100 chr7D 96.324 136 5 0 4920 5055 32605053 32604918 1.830000e-54 224.0
21 TraesCS4D01G050100 chr4A 94.590 2865 88 21 1363 4186 692385754 692382916 0.000000e+00 4370.0
22 TraesCS4D01G050100 chr4A 89.805 667 33 7 1 643 692390181 692389526 0.000000e+00 822.0
23 TraesCS4D01G050100 chr4A 89.213 445 11 12 693 1116 692386234 692385806 5.800000e-144 521.0
24 TraesCS4D01G050100 chr4A 97.059 136 4 0 4920 5055 597836263 597836128 3.940000e-56 230.0
25 TraesCS4D01G050100 chr4A 90.541 148 14 0 4539 4686 597837205 597837058 3.990000e-46 196.0
26 TraesCS4D01G050100 chr4A 83.417 199 16 11 4441 4637 692382309 692382126 8.700000e-38 169.0
27 TraesCS4D01G050100 chr4A 93.750 112 4 2 3480 3588 597837505 597837394 1.130000e-36 165.0
28 TraesCS4D01G050100 chr4A 95.062 81 4 0 2063 2143 687562684 687562604 1.480000e-25 128.0
29 TraesCS4D01G050100 chr4A 90.526 95 6 1 3870 3961 597837387 597837293 6.870000e-24 122.0
30 TraesCS4D01G050100 chr4A 95.775 71 3 0 631 701 692389508 692389438 1.150000e-21 115.0
31 TraesCS4D01G050100 chr7A 96.595 2614 59 15 1363 3964 32632824 32630229 0.000000e+00 4307.0
32 TraesCS4D01G050100 chr7A 89.717 1167 66 23 1 1116 32634035 32632872 0.000000e+00 1441.0
33 TraesCS4D01G050100 chr7A 81.705 481 30 17 4444 4922 32629123 32628699 1.040000e-91 348.0
34 TraesCS4D01G050100 chr7A 95.536 112 5 0 4920 5031 32628069 32627958 4.020000e-41 180.0
35 TraesCS4D01G050100 chr7A 94.444 36 2 0 4292 4327 32629586 32629551 7.070000e-04 56.5
36 TraesCS4D01G050100 chr6B 95.935 1599 52 10 1869 3463 626213761 626215350 0.000000e+00 2580.0
37 TraesCS4D01G050100 chr6B 88.129 834 55 14 3464 4265 626216565 626217386 0.000000e+00 952.0
38 TraesCS4D01G050100 chr6B 81.013 316 37 18 1449 1749 626213386 626213693 3.940000e-56 230.0
39 TraesCS4D01G050100 chr6B 89.172 157 13 2 960 1116 626212036 626212188 5.160000e-45 193.0
40 TraesCS4D01G050100 chr6B 100.000 29 0 0 4299 4327 626217807 626217835 3.000000e-03 54.7
41 TraesCS4D01G050100 chr3A 78.483 725 111 27 3260 3961 651640693 651639991 2.800000e-117 433.0
42 TraesCS4D01G050100 chr3B 78.112 699 88 32 2831 3502 680750438 680751098 2.860000e-102 383.0
43 TraesCS4D01G050100 chr3B 81.938 454 53 17 2349 2794 680749907 680750339 1.730000e-94 357.0
44 TraesCS4D01G050100 chr1D 79.688 320 51 7 321 633 28231554 28231242 8.520000e-53 219.0
45 TraesCS4D01G050100 chr1D 83.010 206 14 8 1869 2054 145884812 145885016 3.130000e-37 167.0
46 TraesCS4D01G050100 chr2D 80.224 268 41 4 321 587 541079422 541079678 1.860000e-44 191.0
47 TraesCS4D01G050100 chr5D 88.971 136 10 2 1923 2054 485215545 485215411 4.050000e-36 163.0
48 TraesCS4D01G050100 chr3D 88.971 136 10 2 1923 2054 494379278 494379144 4.050000e-36 163.0
49 TraesCS4D01G050100 chr7B 95.062 81 4 0 2063 2143 747303738 747303658 1.480000e-25 128.0
50 TraesCS4D01G050100 chr7B 89.655 87 9 0 551 637 430791378 430791464 1.490000e-20 111.0
51 TraesCS4D01G050100 chr1B 96.154 78 3 0 2063 2140 35096862 35096939 1.480000e-25 128.0
52 TraesCS4D01G050100 chr6A 82.707 133 21 1 4920 5050 102120546 102120678 3.200000e-22 117.0
53 TraesCS4D01G050100 chr5B 89.286 84 9 0 553 636 649001895 649001812 6.920000e-19 106.0
54 TraesCS4D01G050100 chr2A 91.892 74 6 0 558 631 762827722 762827795 2.490000e-18 104.0
55 TraesCS4D01G050100 chr5A 92.537 67 5 0 577 643 535663521 535663455 4.170000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G050100 chr4D 25691940 25696994 5054 True 4440.500000 6820 100.00000 1 5055 2 chr4D.!!$R1 5054
1 TraesCS4D01G050100 chr4D 5683842 5687356 3514 False 656.200000 1059 90.46020 1367 5055 5 chr4D.!!$F1 3688
2 TraesCS4D01G050100 chr4B 38024491 38029420 4929 True 1732.250000 4855 94.65325 1 4533 4 chr4B.!!$R2 4532
3 TraesCS4D01G050100 chr4B 9948276 9950896 2620 False 400.666667 551 88.77400 3600 5055 3 chr4B.!!$F1 1455
4 TraesCS4D01G050100 chr7D 32604918 32611159 6241 True 1136.600000 4392 89.56900 478 5055 5 chr7D.!!$R2 4577
5 TraesCS4D01G050100 chr4A 692382126 692390181 8055 True 1199.400000 4370 90.56000 1 4637 5 chr4A.!!$R3 4636
6 TraesCS4D01G050100 chr7A 32627958 32634035 6077 True 1266.500000 4307 91.59940 1 5031 5 chr7A.!!$R1 5030
7 TraesCS4D01G050100 chr6B 626212036 626217835 5799 False 801.940000 2580 90.84980 960 4327 5 chr6B.!!$F1 3367
8 TraesCS4D01G050100 chr3A 651639991 651640693 702 True 433.000000 433 78.48300 3260 3961 1 chr3A.!!$R1 701
9 TraesCS4D01G050100 chr3B 680749907 680751098 1191 False 370.000000 383 80.02500 2349 3502 2 chr3B.!!$F1 1153

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
60 61 0.172803 GAGCGACGGTGTTCTATGGT 59.827 55.0 3.31 0.0 0.00 3.55 F
61 62 0.606604 AGCGACGGTGTTCTATGGTT 59.393 50.0 0.00 0.0 0.00 3.67 F
111 112 0.688087 GCTCTAGCCTAGGGTGTGGT 60.688 60.0 23.91 0.0 34.31 4.16 F
2038 7471 0.324645 GTGGTGGGGGATCTTTGCAT 60.325 55.0 0.00 0.0 0.00 3.96 F
2185 7618 1.281899 GACGCTAGTGATGCTTGTCC 58.718 55.0 10.99 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1717 7106 1.144691 TCCCCTCACCAACACAATCA 58.855 50.000 0.00 0.0 0.00 2.57 R
2038 7471 4.404073 ACCAAAACAAATCAGTGTTAGGCA 59.596 37.500 8.53 0.0 40.86 4.75 R
2330 7770 1.135402 GTTGGGTTCATTCATGGCGAC 60.135 52.381 0.00 0.0 0.00 5.19 R
3770 10572 1.561076 CCATCCTTGACATCCCACTCA 59.439 52.381 0.00 0.0 0.00 3.41 R
4191 11059 2.513753 AGGCGACCATTGTGAATGAAA 58.486 42.857 0.00 0.0 41.46 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 0.172803 GAGCGACGGTGTTCTATGGT 59.827 55.000 3.31 0.00 0.00 3.55
61 62 0.606604 AGCGACGGTGTTCTATGGTT 59.393 50.000 0.00 0.00 0.00 3.67
111 112 0.688087 GCTCTAGCCTAGGGTGTGGT 60.688 60.000 23.91 0.00 34.31 4.16
212 213 1.269257 GCTGTTGCAAAGGTCCTTGAC 60.269 52.381 4.45 0.83 39.41 3.18
367 368 1.675641 GTCGGGCCTGTCAAAGCAT 60.676 57.895 12.43 0.00 0.00 3.79
394 395 0.984995 AAAGTCTAAGCCCGAGCCTT 59.015 50.000 0.00 0.00 41.25 4.35
833 5080 3.851128 GCCGAGTAGGACAGCCCC 61.851 72.222 0.00 0.00 45.00 5.80
834 5081 2.363795 CCGAGTAGGACAGCCCCA 60.364 66.667 0.00 0.00 45.00 4.96
835 5082 2.427245 CCGAGTAGGACAGCCCCAG 61.427 68.421 0.00 0.00 45.00 4.45
836 5083 1.379977 CGAGTAGGACAGCCCCAGA 60.380 63.158 0.00 0.00 34.66 3.86
837 5084 1.388065 CGAGTAGGACAGCCCCAGAG 61.388 65.000 0.00 0.00 34.66 3.35
1696 7085 8.817100 CATGTTATTATGGTGTGTGTAGTGTAG 58.183 37.037 0.00 0.00 0.00 2.74
1700 7089 7.670605 ATTATGGTGTGTGTAGTGTAGGTAT 57.329 36.000 0.00 0.00 0.00 2.73
1701 7090 8.771521 ATTATGGTGTGTGTAGTGTAGGTATA 57.228 34.615 0.00 0.00 0.00 1.47
1702 7091 8.771521 TTATGGTGTGTGTAGTGTAGGTATAT 57.228 34.615 0.00 0.00 0.00 0.86
1703 7092 9.865152 TTATGGTGTGTGTAGTGTAGGTATATA 57.135 33.333 0.00 0.00 0.00 0.86
1704 7093 8.951614 ATGGTGTGTGTAGTGTAGGTATATAT 57.048 34.615 0.00 0.00 0.00 0.86
1705 7094 8.400184 TGGTGTGTGTAGTGTAGGTATATATC 57.600 38.462 0.00 0.00 0.00 1.63
1706 7095 7.449395 TGGTGTGTGTAGTGTAGGTATATATCC 59.551 40.741 0.00 0.00 0.00 2.59
1749 7138 3.696548 GGTGAGGGGATTTTGATTCTGTC 59.303 47.826 0.00 0.00 0.00 3.51
2038 7471 0.324645 GTGGTGGGGGATCTTTGCAT 60.325 55.000 0.00 0.00 0.00 3.96
2185 7618 1.281899 GACGCTAGTGATGCTTGTCC 58.718 55.000 10.99 0.00 0.00 4.02
2329 7769 7.228108 AGTTCATGAATTGATCGTTCATATGCT 59.772 33.333 19.66 15.40 42.68 3.79
2330 7770 6.894828 TCATGAATTGATCGTTCATATGCTG 58.105 36.000 19.66 12.34 42.68 4.41
2331 7771 6.484308 TCATGAATTGATCGTTCATATGCTGT 59.516 34.615 19.66 1.98 42.68 4.40
2332 7772 6.291067 TGAATTGATCGTTCATATGCTGTC 57.709 37.500 8.73 0.00 31.07 3.51
2619 8070 4.447138 TGGACACATGGTTAGTTCCTTT 57.553 40.909 0.00 0.00 0.00 3.11
2645 8100 3.245518 ACCACTTTGCAGTTGTTTTCC 57.754 42.857 0.00 0.00 0.00 3.13
2697 8153 5.873179 AATACGTGTATTGTTCCCTGTTG 57.127 39.130 0.00 0.00 34.71 3.33
3147 8696 8.290325 GTCTGGACTTGTTGAAGGTTATTTTAG 58.710 37.037 0.00 0.00 32.95 1.85
3995 10836 3.366476 CGTTTGTTTCACCCACTGTTTCA 60.366 43.478 0.00 0.00 0.00 2.69
4096 10940 1.455849 CAAGTCCAACAGAGGGGCA 59.544 57.895 0.00 0.00 30.51 5.36
4366 12173 9.830975 AGGGAATTATTATGCCAAATGTAAAAC 57.169 29.630 0.00 0.00 29.85 2.43
4377 12184 5.582665 GCCAAATGTAAAACCAGAAACACAA 59.417 36.000 0.00 0.00 0.00 3.33
4568 12495 7.016153 TGGTATTCAAGAAGACAGGTTACAT 57.984 36.000 9.47 0.00 34.44 2.29
4634 12574 3.305897 ACTGCAAAAGCGCAAACTAAAAC 59.694 39.130 11.47 0.00 42.45 2.43
4637 12577 3.302415 GCAAAAGCGCAAACTAAAACAGG 60.302 43.478 11.47 0.00 0.00 4.00
4638 12578 4.109050 CAAAAGCGCAAACTAAAACAGGA 58.891 39.130 11.47 0.00 0.00 3.86
4639 12579 4.584327 AAAGCGCAAACTAAAACAGGAT 57.416 36.364 11.47 0.00 0.00 3.24
4640 12580 3.559238 AGCGCAAACTAAAACAGGATG 57.441 42.857 11.47 0.00 46.00 3.51
4641 12581 3.146066 AGCGCAAACTAAAACAGGATGA 58.854 40.909 11.47 0.00 39.69 2.92
4642 12582 3.568007 AGCGCAAACTAAAACAGGATGAA 59.432 39.130 11.47 0.00 39.69 2.57
4643 12583 4.037446 AGCGCAAACTAAAACAGGATGAAA 59.963 37.500 11.47 0.00 39.69 2.69
4644 12584 4.382754 GCGCAAACTAAAACAGGATGAAAG 59.617 41.667 0.30 0.00 39.69 2.62
4645 12585 5.757886 CGCAAACTAAAACAGGATGAAAGA 58.242 37.500 0.00 0.00 39.69 2.52
4646 12586 5.853282 CGCAAACTAAAACAGGATGAAAGAG 59.147 40.000 0.00 0.00 39.69 2.85
4673 12613 6.138761 GTCATAAACAGCAGCATTAGCATAC 58.861 40.000 0.00 0.00 45.49 2.39
4874 12824 0.953960 GTAACCGGGCAGAGTTGTGG 60.954 60.000 6.32 0.00 0.00 4.17
4916 12866 7.148390 GGACCAGAGATAGCAAACTTTAAACTC 60.148 40.741 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 3.390521 ATGGCCCGAGCGTCTCAA 61.391 61.111 0.00 0.00 41.24 3.02
61 62 4.147449 CATGGCCCGAGCGTCTCA 62.147 66.667 0.00 0.00 41.24 3.27
111 112 1.456518 AGCAGCTGGCCGAGATAGA 60.457 57.895 17.12 0.00 46.50 1.98
212 213 1.681166 CCAATCTTCTGACCCAGCCAG 60.681 57.143 0.00 0.00 0.00 4.85
367 368 7.797233 GCTCGGGCTTAGACTTTACAAGTCA 62.797 48.000 16.92 2.97 46.23 3.41
374 375 1.861982 AGGCTCGGGCTTAGACTTTA 58.138 50.000 7.48 0.00 33.67 1.85
400 401 1.891722 ATACGTTTTCTCGGCCGGGT 61.892 55.000 27.35 6.90 34.94 5.28
439 440 9.243637 CCGAAATTGATGTTTTTAGTTTCTTCA 57.756 29.630 0.00 0.00 0.00 3.02
563 648 4.038080 CGGGCTTTGTGTTCGGGC 62.038 66.667 0.00 0.00 0.00 6.13
833 5080 4.141367 TGTGTATACTCCTCCTCTCCTCTG 60.141 50.000 4.17 0.00 0.00 3.35
834 5081 4.048600 TGTGTATACTCCTCCTCTCCTCT 58.951 47.826 4.17 0.00 0.00 3.69
835 5082 4.394729 CTGTGTATACTCCTCCTCTCCTC 58.605 52.174 4.17 0.00 0.00 3.71
836 5083 3.435890 GCTGTGTATACTCCTCCTCTCCT 60.436 52.174 4.17 0.00 0.00 3.69
837 5084 2.888414 GCTGTGTATACTCCTCCTCTCC 59.112 54.545 4.17 0.00 0.00 3.71
1441 5750 2.939103 CAATTCACCAGAAGATCGACCC 59.061 50.000 0.00 0.00 37.14 4.46
1701 7090 9.154847 CAACACAATCATCACATATACGGATAT 57.845 33.333 0.00 0.00 0.00 1.63
1702 7091 7.602265 CCAACACAATCATCACATATACGGATA 59.398 37.037 0.00 0.00 0.00 2.59
1703 7092 6.427853 CCAACACAATCATCACATATACGGAT 59.572 38.462 0.00 0.00 0.00 4.18
1704 7093 5.757808 CCAACACAATCATCACATATACGGA 59.242 40.000 0.00 0.00 0.00 4.69
1705 7094 5.527214 ACCAACACAATCATCACATATACGG 59.473 40.000 0.00 0.00 0.00 4.02
1706 7095 6.257630 TCACCAACACAATCATCACATATACG 59.742 38.462 0.00 0.00 0.00 3.06
1717 7106 1.144691 TCCCCTCACCAACACAATCA 58.855 50.000 0.00 0.00 0.00 2.57
1766 7168 9.645059 CTCACCGACACAATCTTCATATATATT 57.355 33.333 0.00 0.00 0.00 1.28
2038 7471 4.404073 ACCAAAACAAATCAGTGTTAGGCA 59.596 37.500 8.53 0.00 40.86 4.75
2330 7770 1.135402 GTTGGGTTCATTCATGGCGAC 60.135 52.381 0.00 0.00 0.00 5.19
2331 7771 1.173043 GTTGGGTTCATTCATGGCGA 58.827 50.000 0.00 0.00 0.00 5.54
2332 7772 0.173255 GGTTGGGTTCATTCATGGCG 59.827 55.000 0.00 0.00 0.00 5.69
2645 8100 2.874701 GCCTACACAATGCATAGACAGG 59.125 50.000 0.00 4.81 0.00 4.00
2697 8153 3.303351 ACCCAATGGATGATGAAGGAC 57.697 47.619 0.00 0.00 34.81 3.85
3147 8696 3.445096 AGCAAATCCAACATGTTCCTAGC 59.555 43.478 8.48 8.43 0.00 3.42
3663 10456 3.264450 AGGCATGTTACTTTACCTCTGCT 59.736 43.478 0.00 0.00 0.00 4.24
3770 10572 1.561076 CCATCCTTGACATCCCACTCA 59.439 52.381 0.00 0.00 0.00 3.41
3995 10836 7.132213 CGACATTTCACACTTGTGTATCTTTT 58.868 34.615 9.16 0.00 45.76 2.27
4190 11058 2.890311 AGGCGACCATTGTGAATGAAAA 59.110 40.909 0.00 0.00 41.46 2.29
4191 11059 2.513753 AGGCGACCATTGTGAATGAAA 58.486 42.857 0.00 0.00 41.46 2.69
4265 11135 9.396022 TCTTTCCTTCATATATGTTGTTCCTTC 57.604 33.333 12.42 0.00 0.00 3.46
4353 12160 5.112686 TGTGTTTCTGGTTTTACATTTGGC 58.887 37.500 0.00 0.00 0.00 4.52
4366 12173 6.030849 TCGTTTTGTACATTTGTGTTTCTGG 58.969 36.000 0.00 0.00 0.00 3.86
4377 12184 5.276868 GCGCTCTATGATCGTTTTGTACATT 60.277 40.000 0.00 0.00 0.00 2.71
4414 12307 3.071479 CCGTAGCTGGCAGTTTTTCTTA 58.929 45.455 17.16 0.00 0.00 2.10
4423 12316 2.882927 TATTGTACCGTAGCTGGCAG 57.117 50.000 10.94 10.94 0.00 4.85
4539 12466 6.407202 ACCTGTCTTCTTGAATACCATGTAC 58.593 40.000 0.00 0.00 0.00 2.90
4540 12467 6.620877 ACCTGTCTTCTTGAATACCATGTA 57.379 37.500 0.00 0.00 0.00 2.29
4541 12468 5.505181 ACCTGTCTTCTTGAATACCATGT 57.495 39.130 0.00 0.00 0.00 3.21
4568 12495 9.677567 GTGTTTCTTATTGTGCTTTCAGAATTA 57.322 29.630 0.00 0.00 37.39 1.40
4634 12574 6.409704 TGTTTATGACCTCTCTTTCATCCTG 58.590 40.000 0.00 0.00 34.28 3.86
4637 12577 5.877012 TGCTGTTTATGACCTCTCTTTCATC 59.123 40.000 0.00 0.00 34.28 2.92
4638 12578 5.809001 TGCTGTTTATGACCTCTCTTTCAT 58.191 37.500 0.00 0.00 36.43 2.57
4639 12579 5.227569 TGCTGTTTATGACCTCTCTTTCA 57.772 39.130 0.00 0.00 0.00 2.69
4640 12580 4.094146 GCTGCTGTTTATGACCTCTCTTTC 59.906 45.833 0.00 0.00 0.00 2.62
4641 12581 4.006319 GCTGCTGTTTATGACCTCTCTTT 58.994 43.478 0.00 0.00 0.00 2.52
4642 12582 3.008375 TGCTGCTGTTTATGACCTCTCTT 59.992 43.478 0.00 0.00 0.00 2.85
4643 12583 2.568956 TGCTGCTGTTTATGACCTCTCT 59.431 45.455 0.00 0.00 0.00 3.10
4644 12584 2.977914 TGCTGCTGTTTATGACCTCTC 58.022 47.619 0.00 0.00 0.00 3.20
4645 12585 3.641434 ATGCTGCTGTTTATGACCTCT 57.359 42.857 0.00 0.00 0.00 3.69
4646 12586 4.260948 GCTAATGCTGCTGTTTATGACCTC 60.261 45.833 0.00 0.00 36.03 3.85
4874 12824 2.565834 TGGTCCTTCCTTGTGTAGTAGC 59.434 50.000 0.00 0.00 37.07 3.58
4916 12866 2.096069 CCTCGACAAGCACTCATTGTTG 60.096 50.000 0.53 0.53 40.86 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.