Multiple sequence alignment - TraesCS4D01G048100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G048100 chr4D 100.000 3221 0 0 1 3221 23582436 23579216 0.000000e+00 5949
1 TraesCS4D01G048100 chr4D 92.708 384 27 1 2835 3218 24492139 24491757 1.310000e-153 553
2 TraesCS4D01G048100 chr2B 97.819 2155 45 2 677 2831 542914564 542912412 0.000000e+00 3718
3 TraesCS4D01G048100 chr2B 92.971 441 31 0 1 441 592249121 592249561 0.000000e+00 643
4 TraesCS4D01G048100 chr2B 92.986 442 30 1 1 441 618822692 618823133 0.000000e+00 643
5 TraesCS4D01G048100 chr2B 84.776 624 74 16 1 614 390243835 390244447 9.880000e-170 606
6 TraesCS4D01G048100 chr2B 93.187 411 28 0 1 411 592257375 592257785 3.550000e-169 604
7 TraesCS4D01G048100 chr2B 84.779 611 75 15 1 600 390251186 390251789 5.950000e-167 597
8 TraesCS4D01G048100 chr2B 84.102 629 76 18 1 614 329764843 329765462 1.290000e-163 586
9 TraesCS4D01G048100 chr2B 92.506 387 29 0 2835 3221 229688902 229688516 3.630000e-154 555
10 TraesCS4D01G048100 chr2B 90.566 265 23 2 418 680 117059521 117059785 1.840000e-92 350
11 TraesCS4D01G048100 chr2B 89.434 265 26 2 418 680 117068473 117068737 1.850000e-87 333
12 TraesCS4D01G048100 chr2B 96.721 183 5 1 676 858 542909852 542909671 1.450000e-78 303
13 TraesCS4D01G048100 chr2B 86.792 265 32 3 406 669 34654096 34653834 3.140000e-75 292
14 TraesCS4D01G048100 chr1B 97.768 2151 47 1 681 2831 327220363 327222512 0.000000e+00 3705
15 TraesCS4D01G048100 chr1B 97.268 183 4 1 676 858 327225072 327225253 3.120000e-80 309
16 TraesCS4D01G048100 chr3A 97.453 2159 46 2 681 2831 529170195 529168038 0.000000e+00 3674
17 TraesCS4D01G048100 chr3A 98.035 2036 39 1 796 2831 163924358 163926392 0.000000e+00 3537
18 TraesCS4D01G048100 chr3A 96.721 183 5 1 676 858 163929101 163929282 1.450000e-78 303
19 TraesCS4D01G048100 chr3A 96.216 185 4 2 676 858 529165478 529165295 1.880000e-77 300
20 TraesCS4D01G048100 chr3A 98.413 126 2 0 681 806 163924209 163924334 4.180000e-54 222
21 TraesCS4D01G048100 chr3A 79.814 322 50 13 170 480 256939955 256939638 1.500000e-53 220
22 TraesCS4D01G048100 chr2A 84.239 1859 253 31 998 2831 3415272 3417115 0.000000e+00 1773
23 TraesCS4D01G048100 chr2A 90.283 247 23 1 435 680 437164332 437164086 4.010000e-84 322
24 TraesCS4D01G048100 chr2D 83.746 1858 265 28 998 2831 353303345 353301501 0.000000e+00 1724
25 TraesCS4D01G048100 chr6D 82.176 1857 296 24 998 2831 316802070 316803914 0.000000e+00 1563
26 TraesCS4D01G048100 chr7A 84.978 1378 164 21 681 2029 185493782 185492419 0.000000e+00 1358
27 TraesCS4D01G048100 chr7A 80.345 1857 305 45 818 2642 114279519 114277691 0.000000e+00 1352
28 TraesCS4D01G048100 chr7A 89.537 583 60 1 2249 2831 185473812 185473231 0.000000e+00 737
29 TraesCS4D01G048100 chr7A 87.500 184 20 3 676 858 185470691 185470510 3.260000e-50 209
30 TraesCS4D01G048100 chr7A 81.893 243 29 3 2024 2251 185484186 185483944 1.180000e-44 191
31 TraesCS4D01G048100 chr4B 95.448 681 30 1 1 680 341341563 341342243 0.000000e+00 1085
32 TraesCS4D01G048100 chr4B 92.308 247 18 1 435 680 279046258 279046504 1.840000e-92 350
33 TraesCS4D01G048100 chr7D 83.422 1128 168 13 998 2114 631787436 631786317 0.000000e+00 1029
34 TraesCS4D01G048100 chr6A 81.964 1120 171 22 1733 2831 591313709 591314818 0.000000e+00 920
35 TraesCS4D01G048100 chr3B 91.344 439 38 0 3 441 363077312 363077750 4.600000e-168 601
36 TraesCS4D01G048100 chr3B 92.468 385 28 1 2835 3219 214381546 214381163 1.690000e-152 549
37 TraesCS4D01G048100 chr3B 89.811 265 25 2 418 680 441108972 441109236 3.980000e-89 339
38 TraesCS4D01G048100 chr7B 93.490 384 25 0 2835 3218 361301017 361300634 3.600000e-159 571
39 TraesCS4D01G048100 chr7B 92.746 386 28 0 2835 3220 398527807 398527422 2.810000e-155 558
40 TraesCS4D01G048100 chr7B 92.529 174 12 1 7 180 226551200 226551372 6.900000e-62 248
41 TraesCS4D01G048100 chr6B 92.765 387 27 1 2835 3221 399005543 399005158 2.810000e-155 558
42 TraesCS4D01G048100 chr5B 92.746 386 27 1 2835 3220 225163439 225163823 1.010000e-154 556
43 TraesCS4D01G048100 chr5B 92.506 387 29 0 2835 3221 307016158 307015772 3.630000e-154 555
44 TraesCS4D01G048100 chr5D 92.506 387 29 0 2835 3221 235789348 235788962 3.630000e-154 555
45 TraesCS4D01G048100 chr1A 91.093 247 21 1 435 680 380932829 380933075 1.850000e-87 333


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G048100 chr4D 23579216 23582436 3220 True 5949.0 5949 100.0000 1 3221 1 chr4D.!!$R1 3220
1 TraesCS4D01G048100 chr2B 542909671 542914564 4893 True 2010.5 3718 97.2700 676 2831 2 chr2B.!!$R3 2155
2 TraesCS4D01G048100 chr2B 390243835 390244447 612 False 606.0 606 84.7760 1 614 1 chr2B.!!$F4 613
3 TraesCS4D01G048100 chr2B 390251186 390251789 603 False 597.0 597 84.7790 1 600 1 chr2B.!!$F5 599
4 TraesCS4D01G048100 chr2B 329764843 329765462 619 False 586.0 586 84.1020 1 614 1 chr2B.!!$F3 613
5 TraesCS4D01G048100 chr1B 327220363 327225253 4890 False 2007.0 3705 97.5180 676 2831 2 chr1B.!!$F1 2155
6 TraesCS4D01G048100 chr3A 529165295 529170195 4900 True 1987.0 3674 96.8345 676 2831 2 chr3A.!!$R2 2155
7 TraesCS4D01G048100 chr3A 163924209 163929282 5073 False 1354.0 3537 97.7230 676 2831 3 chr3A.!!$F1 2155
8 TraesCS4D01G048100 chr2A 3415272 3417115 1843 False 1773.0 1773 84.2390 998 2831 1 chr2A.!!$F1 1833
9 TraesCS4D01G048100 chr2D 353301501 353303345 1844 True 1724.0 1724 83.7460 998 2831 1 chr2D.!!$R1 1833
10 TraesCS4D01G048100 chr6D 316802070 316803914 1844 False 1563.0 1563 82.1760 998 2831 1 chr6D.!!$F1 1833
11 TraesCS4D01G048100 chr7A 185492419 185493782 1363 True 1358.0 1358 84.9780 681 2029 1 chr7A.!!$R3 1348
12 TraesCS4D01G048100 chr7A 114277691 114279519 1828 True 1352.0 1352 80.3450 818 2642 1 chr7A.!!$R1 1824
13 TraesCS4D01G048100 chr7A 185470510 185473812 3302 True 473.0 737 88.5185 676 2831 2 chr7A.!!$R4 2155
14 TraesCS4D01G048100 chr4B 341341563 341342243 680 False 1085.0 1085 95.4480 1 680 1 chr4B.!!$F2 679
15 TraesCS4D01G048100 chr7D 631786317 631787436 1119 True 1029.0 1029 83.4220 998 2114 1 chr7D.!!$R1 1116
16 TraesCS4D01G048100 chr6A 591313709 591314818 1109 False 920.0 920 81.9640 1733 2831 1 chr6A.!!$F1 1098

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
630 644 0.033504 GAACAGAGGAACGGTGCTGA 59.966 55.0 0.0 0.0 32.86 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2532 2638 0.179018 GGGTCCGGAGCTATTGCATT 60.179 55.0 31.09 0.0 42.74 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
303 305 1.908483 GTGGAAGGAGCTACAGGGG 59.092 63.158 0.00 0.00 0.00 4.79
348 350 1.066114 GAAGACGACGACGAGGCTTG 61.066 60.000 15.32 0.00 42.66 4.01
353 355 1.636570 CGACGACGAGGCTTGAGAGA 61.637 60.000 9.20 0.00 42.66 3.10
478 489 1.002274 GGAGGAGGCAGAAGAGGGA 59.998 63.158 0.00 0.00 0.00 4.20
482 493 1.352687 AGGAGGCAGAAGAGGGAAAAC 59.647 52.381 0.00 0.00 0.00 2.43
483 494 1.443802 GAGGCAGAAGAGGGAAAACG 58.556 55.000 0.00 0.00 0.00 3.60
484 495 0.036875 AGGCAGAAGAGGGAAAACGG 59.963 55.000 0.00 0.00 0.00 4.44
485 496 0.036306 GGCAGAAGAGGGAAAACGGA 59.964 55.000 0.00 0.00 0.00 4.69
487 498 1.443802 CAGAAGAGGGAAAACGGAGC 58.556 55.000 0.00 0.00 0.00 4.70
488 499 0.037232 AGAAGAGGGAAAACGGAGCG 60.037 55.000 0.00 0.00 0.00 5.03
496 507 0.037605 GAAAACGGAGCGAGGAGGAA 60.038 55.000 0.00 0.00 0.00 3.36
517 529 3.155167 CTAGGGTCGGGGCAGGAC 61.155 72.222 0.00 0.00 0.00 3.85
526 540 1.062734 TCGGGGCAGGACTTTATAGGA 60.063 52.381 0.00 0.00 0.00 2.94
529 543 2.037144 GGGCAGGACTTTATAGGACGA 58.963 52.381 0.00 0.00 0.00 4.20
530 544 2.433239 GGGCAGGACTTTATAGGACGAA 59.567 50.000 0.00 0.00 0.00 3.85
532 546 3.492829 GGCAGGACTTTATAGGACGAAGG 60.493 52.174 0.00 0.00 0.00 3.46
536 550 3.243805 GGACTTTATAGGACGAAGGGAGC 60.244 52.174 0.00 0.00 0.00 4.70
538 552 3.385111 ACTTTATAGGACGAAGGGAGCAG 59.615 47.826 0.00 0.00 0.00 4.24
562 576 3.192922 CCGCCAAATCGACCGGAC 61.193 66.667 9.46 0.00 43.20 4.79
565 579 2.750888 GCCAAATCGACCGGACTGC 61.751 63.158 9.46 0.00 0.00 4.40
576 590 4.436998 GGACTGCCGACGTGGAGG 62.437 72.222 0.00 0.00 42.00 4.30
587 601 1.142748 CGTGGAGGCTCTGGATGTC 59.857 63.158 15.23 0.00 0.00 3.06
588 602 1.524482 GTGGAGGCTCTGGATGTCC 59.476 63.158 15.23 0.00 0.00 4.02
607 621 2.579878 TGCCGTACAGGGAGAAGAG 58.420 57.895 6.00 0.00 41.48 2.85
610 624 2.030045 GCCGTACAGGGAGAAGAGGAT 61.030 57.143 6.00 0.00 41.48 3.24
611 625 1.683917 CCGTACAGGGAGAAGAGGATG 59.316 57.143 0.00 0.00 35.97 3.51
612 626 2.656002 CGTACAGGGAGAAGAGGATGA 58.344 52.381 0.00 0.00 0.00 2.92
613 627 3.024547 CGTACAGGGAGAAGAGGATGAA 58.975 50.000 0.00 0.00 0.00 2.57
614 628 3.181485 CGTACAGGGAGAAGAGGATGAAC 60.181 52.174 0.00 0.00 0.00 3.18
615 629 2.907892 ACAGGGAGAAGAGGATGAACA 58.092 47.619 0.00 0.00 0.00 3.18
616 630 2.836981 ACAGGGAGAAGAGGATGAACAG 59.163 50.000 0.00 0.00 0.00 3.16
617 631 3.102972 CAGGGAGAAGAGGATGAACAGA 58.897 50.000 0.00 0.00 0.00 3.41
618 632 3.132646 CAGGGAGAAGAGGATGAACAGAG 59.867 52.174 0.00 0.00 0.00 3.35
619 633 2.433970 GGGAGAAGAGGATGAACAGAGG 59.566 54.545 0.00 0.00 0.00 3.69
620 634 3.370104 GGAGAAGAGGATGAACAGAGGA 58.630 50.000 0.00 0.00 0.00 3.71
621 635 3.772025 GGAGAAGAGGATGAACAGAGGAA 59.228 47.826 0.00 0.00 0.00 3.36
622 636 4.382577 GGAGAAGAGGATGAACAGAGGAAC 60.383 50.000 0.00 0.00 0.00 3.62
623 637 3.194542 AGAAGAGGATGAACAGAGGAACG 59.805 47.826 0.00 0.00 0.00 3.95
624 638 1.827969 AGAGGATGAACAGAGGAACGG 59.172 52.381 0.00 0.00 0.00 4.44
625 639 1.550976 GAGGATGAACAGAGGAACGGT 59.449 52.381 0.00 0.00 0.00 4.83
626 640 1.276421 AGGATGAACAGAGGAACGGTG 59.724 52.381 0.00 0.00 0.00 4.94
627 641 1.079503 GATGAACAGAGGAACGGTGC 58.920 55.000 0.00 0.00 0.00 5.01
628 642 0.687354 ATGAACAGAGGAACGGTGCT 59.313 50.000 0.00 0.00 0.00 4.40
629 643 0.249868 TGAACAGAGGAACGGTGCTG 60.250 55.000 0.00 0.00 34.65 4.41
630 644 0.033504 GAACAGAGGAACGGTGCTGA 59.966 55.000 0.00 0.00 32.86 4.26
631 645 0.687354 AACAGAGGAACGGTGCTGAT 59.313 50.000 0.00 0.00 32.86 2.90
632 646 0.036952 ACAGAGGAACGGTGCTGATG 60.037 55.000 0.00 0.00 32.86 3.07
633 647 0.742281 CAGAGGAACGGTGCTGATGG 60.742 60.000 0.00 0.00 0.00 3.51
634 648 1.450312 GAGGAACGGTGCTGATGGG 60.450 63.158 0.00 0.00 0.00 4.00
635 649 3.134127 GGAACGGTGCTGATGGGC 61.134 66.667 0.00 0.00 0.00 5.36
636 650 2.045926 GAACGGTGCTGATGGGCT 60.046 61.111 0.00 0.00 0.00 5.19
637 651 2.360350 AACGGTGCTGATGGGCTG 60.360 61.111 0.00 0.00 0.00 4.85
638 652 3.925630 AACGGTGCTGATGGGCTGG 62.926 63.158 0.00 0.00 0.00 4.85
639 653 4.100084 CGGTGCTGATGGGCTGGA 62.100 66.667 0.00 0.00 0.00 3.86
640 654 2.599597 GGTGCTGATGGGCTGGAT 59.400 61.111 0.00 0.00 0.00 3.41
641 655 1.076485 GGTGCTGATGGGCTGGATT 60.076 57.895 0.00 0.00 0.00 3.01
642 656 1.105759 GGTGCTGATGGGCTGGATTC 61.106 60.000 0.00 0.00 0.00 2.52
643 657 1.153107 TGCTGATGGGCTGGATTCG 60.153 57.895 0.00 0.00 0.00 3.34
644 658 1.146930 GCTGATGGGCTGGATTCGA 59.853 57.895 0.00 0.00 0.00 3.71
645 659 0.464373 GCTGATGGGCTGGATTCGAA 60.464 55.000 0.00 0.00 0.00 3.71
646 660 1.303309 CTGATGGGCTGGATTCGAAC 58.697 55.000 0.00 0.00 0.00 3.95
647 661 0.461870 TGATGGGCTGGATTCGAACG 60.462 55.000 0.00 0.00 0.00 3.95
648 662 1.153168 ATGGGCTGGATTCGAACGG 60.153 57.895 0.00 0.00 0.00 4.44
649 663 2.513897 GGGCTGGATTCGAACGGG 60.514 66.667 0.00 0.00 0.00 5.28
650 664 2.267961 GGCTGGATTCGAACGGGT 59.732 61.111 0.00 0.00 0.00 5.28
651 665 1.518774 GGCTGGATTCGAACGGGTA 59.481 57.895 0.00 0.00 0.00 3.69
652 666 0.108041 GGCTGGATTCGAACGGGTAA 60.108 55.000 0.00 0.00 0.00 2.85
653 667 1.287425 GCTGGATTCGAACGGGTAAG 58.713 55.000 0.00 0.00 0.00 2.34
654 668 1.134907 GCTGGATTCGAACGGGTAAGA 60.135 52.381 0.00 0.00 0.00 2.10
655 669 2.810650 CTGGATTCGAACGGGTAAGAG 58.189 52.381 0.00 0.00 0.00 2.85
656 670 2.426024 CTGGATTCGAACGGGTAAGAGA 59.574 50.000 0.00 0.00 0.00 3.10
657 671 2.827322 TGGATTCGAACGGGTAAGAGAA 59.173 45.455 0.00 0.00 0.00 2.87
658 672 3.119245 TGGATTCGAACGGGTAAGAGAAG 60.119 47.826 0.00 0.00 0.00 2.85
659 673 3.119209 GGATTCGAACGGGTAAGAGAAGT 60.119 47.826 0.00 0.00 0.00 3.01
660 674 3.293311 TTCGAACGGGTAAGAGAAGTG 57.707 47.619 0.00 0.00 0.00 3.16
661 675 1.542915 TCGAACGGGTAAGAGAAGTGG 59.457 52.381 0.00 0.00 0.00 4.00
662 676 1.723220 GAACGGGTAAGAGAAGTGGC 58.277 55.000 0.00 0.00 0.00 5.01
663 677 1.275573 GAACGGGTAAGAGAAGTGGCT 59.724 52.381 0.00 0.00 0.00 4.75
664 678 1.349067 ACGGGTAAGAGAAGTGGCTT 58.651 50.000 0.00 0.00 0.00 4.35
665 679 1.002087 ACGGGTAAGAGAAGTGGCTTG 59.998 52.381 0.00 0.00 0.00 4.01
666 680 1.454201 GGGTAAGAGAAGTGGCTTGC 58.546 55.000 0.00 0.00 0.00 4.01
667 681 1.003696 GGGTAAGAGAAGTGGCTTGCT 59.996 52.381 0.00 0.00 0.00 3.91
668 682 2.079925 GGTAAGAGAAGTGGCTTGCTG 58.920 52.381 0.00 0.00 0.00 4.41
669 683 2.551071 GGTAAGAGAAGTGGCTTGCTGT 60.551 50.000 0.00 0.00 0.00 4.40
670 684 2.355010 AAGAGAAGTGGCTTGCTGTT 57.645 45.000 0.00 0.00 0.00 3.16
671 685 1.602311 AGAGAAGTGGCTTGCTGTTG 58.398 50.000 0.00 0.00 0.00 3.33
672 686 0.595095 GAGAAGTGGCTTGCTGTTGG 59.405 55.000 0.00 0.00 0.00 3.77
673 687 0.106519 AGAAGTGGCTTGCTGTTGGT 60.107 50.000 0.00 0.00 0.00 3.67
674 688 0.312102 GAAGTGGCTTGCTGTTGGTC 59.688 55.000 0.00 0.00 0.00 4.02
675 689 1.447317 AAGTGGCTTGCTGTTGGTCG 61.447 55.000 0.00 0.00 0.00 4.79
676 690 2.594303 TGGCTTGCTGTTGGTCGG 60.594 61.111 0.00 0.00 0.00 4.79
851 900 2.478033 GCCGCCCGGTATTTTCCTG 61.478 63.158 8.66 0.00 37.65 3.86
1462 1535 0.463833 TCGTGCTCTGGCTCTCGATA 60.464 55.000 0.00 0.00 39.59 2.92
1463 1536 0.595588 CGTGCTCTGGCTCTCGATAT 59.404 55.000 0.00 0.00 39.59 1.63
1692 1765 0.586802 GGTCCGCACTTGTTCTTGAC 59.413 55.000 0.00 0.00 0.00 3.18
2283 2389 5.148502 TCTGATCCTGGTATACTTTCCTCC 58.851 45.833 2.25 0.00 0.00 4.30
2434 2540 6.607198 TCCCCACATTATCAAAAATCTTCTCC 59.393 38.462 0.00 0.00 0.00 3.71
2496 2602 3.646162 AGTTTGATCCTTGGGGTTTTTCC 59.354 43.478 0.00 0.00 0.00 3.13
2497 2603 3.628832 TTGATCCTTGGGGTTTTTCCT 57.371 42.857 0.00 0.00 36.25 3.36
2498 2604 3.628832 TGATCCTTGGGGTTTTTCCTT 57.371 42.857 0.00 0.00 36.25 3.36
2575 2681 3.920093 CTCCGTTTGCCCACCTCCC 62.920 68.421 0.00 0.00 0.00 4.30
2832 3752 1.532604 CCTGTACCCAGCACGTCTCA 61.533 60.000 0.00 0.00 37.38 3.27
2839 3759 1.607801 CCAGCACGTCTCAGGATCCA 61.608 60.000 15.82 0.00 0.00 3.41
2840 3760 0.179116 CAGCACGTCTCAGGATCCAG 60.179 60.000 15.82 6.08 0.00 3.86
2843 3763 1.537776 GCACGTCTCAGGATCCAGATG 60.538 57.143 15.82 16.11 0.00 2.90
2844 3764 0.749649 ACGTCTCAGGATCCAGATGC 59.250 55.000 15.82 6.30 0.00 3.91
2856 3776 1.180029 CCAGATGCACTTTCCCAAGG 58.820 55.000 0.00 0.00 33.82 3.61
2857 3777 1.272092 CCAGATGCACTTTCCCAAGGA 60.272 52.381 0.00 0.00 33.82 3.36
2858 3778 2.089980 CAGATGCACTTTCCCAAGGAG 58.910 52.381 0.00 0.00 33.82 3.69
2861 3781 2.205022 TGCACTTTCCCAAGGAGATG 57.795 50.000 0.00 0.00 33.82 2.90
2864 3784 2.716217 CACTTTCCCAAGGAGATGTCC 58.284 52.381 0.00 0.00 44.33 4.02
2865 3785 2.040278 CACTTTCCCAAGGAGATGTCCA 59.960 50.000 12.14 0.00 46.80 4.02
2867 3787 0.613260 TTCCCAAGGAGATGTCCACG 59.387 55.000 12.14 1.01 46.80 4.94
2869 3789 0.613260 CCCAAGGAGATGTCCACGAA 59.387 55.000 12.14 0.00 46.80 3.85
2871 3791 1.001974 CCAAGGAGATGTCCACGAACA 59.998 52.381 12.14 0.00 46.80 3.18
2873 3793 3.338249 CAAGGAGATGTCCACGAACAAT 58.662 45.455 12.14 0.00 46.80 2.71
2874 3794 4.503910 CAAGGAGATGTCCACGAACAATA 58.496 43.478 12.14 0.00 46.80 1.90
2876 3796 3.769844 AGGAGATGTCCACGAACAATACT 59.230 43.478 12.14 0.00 46.80 2.12
2877 3797 3.865745 GGAGATGTCCACGAACAATACTG 59.134 47.826 3.49 0.00 43.31 2.74
2878 3798 3.262420 AGATGTCCACGAACAATACTGC 58.738 45.455 0.00 0.00 31.81 4.40
2879 3799 2.831685 TGTCCACGAACAATACTGCT 57.168 45.000 0.00 0.00 0.00 4.24
2881 3801 2.036604 TGTCCACGAACAATACTGCTGA 59.963 45.455 0.00 0.00 0.00 4.26
2882 3802 3.064207 GTCCACGAACAATACTGCTGAA 58.936 45.455 0.00 0.00 0.00 3.02
2883 3803 3.684788 GTCCACGAACAATACTGCTGAAT 59.315 43.478 0.00 0.00 0.00 2.57
2884 3804 4.868171 GTCCACGAACAATACTGCTGAATA 59.132 41.667 0.00 0.00 0.00 1.75
2886 3806 4.259810 CCACGAACAATACTGCTGAATACG 60.260 45.833 0.00 0.00 0.00 3.06
2887 3807 4.561213 CACGAACAATACTGCTGAATACGA 59.439 41.667 0.00 0.00 0.00 3.43
2888 3808 4.798907 ACGAACAATACTGCTGAATACGAG 59.201 41.667 0.00 0.00 0.00 4.18
2890 3810 4.060038 ACAATACTGCTGAATACGAGGG 57.940 45.455 0.00 0.00 0.00 4.30
2891 3811 3.181465 ACAATACTGCTGAATACGAGGGG 60.181 47.826 0.00 0.00 0.00 4.79
2893 3813 0.978146 ACTGCTGAATACGAGGGGCT 60.978 55.000 0.00 0.00 0.00 5.19
2894 3814 0.531532 CTGCTGAATACGAGGGGCTG 60.532 60.000 0.00 0.00 0.00 4.85
2895 3815 1.889573 GCTGAATACGAGGGGCTGC 60.890 63.158 0.00 0.00 0.00 5.25
2896 3816 1.826024 CTGAATACGAGGGGCTGCT 59.174 57.895 0.00 0.00 0.00 4.24
2897 3817 0.179000 CTGAATACGAGGGGCTGCTT 59.821 55.000 0.00 0.00 0.00 3.91
2898 3818 0.107703 TGAATACGAGGGGCTGCTTG 60.108 55.000 0.00 0.00 0.00 4.01
2899 3819 1.440145 GAATACGAGGGGCTGCTTGC 61.440 60.000 0.00 0.00 41.94 4.01
2910 3830 2.922503 TGCTTGCCGGTCTCAGGA 60.923 61.111 1.90 0.00 0.00 3.86
2913 3833 1.227089 CTTGCCGGTCTCAGGATCG 60.227 63.158 1.90 0.00 44.79 3.69
2914 3834 3.371097 TTGCCGGTCTCAGGATCGC 62.371 63.158 1.90 0.00 43.95 4.58
2915 3835 4.933064 GCCGGTCTCAGGATCGCG 62.933 72.222 1.90 0.00 43.95 5.87
2916 3836 4.271816 CCGGTCTCAGGATCGCGG 62.272 72.222 6.13 0.00 43.95 6.46
2918 3838 3.838271 GGTCTCAGGATCGCGGCA 61.838 66.667 6.13 0.00 0.00 5.69
2919 3839 2.279120 GTCTCAGGATCGCGGCAG 60.279 66.667 6.13 0.00 0.00 4.85
2920 3840 2.440247 TCTCAGGATCGCGGCAGA 60.440 61.111 6.13 0.00 0.00 4.26
2922 3842 3.781770 CTCAGGATCGCGGCAGACC 62.782 68.421 6.13 3.00 0.00 3.85
2923 3843 3.842923 CAGGATCGCGGCAGACCT 61.843 66.667 6.13 5.46 0.00 3.85
2925 3845 4.933064 GGATCGCGGCAGACCTCG 62.933 72.222 6.13 0.00 45.68 4.63
2938 3858 4.051932 CCTCGGGGTTAAGAGGCT 57.948 61.111 0.00 0.00 46.23 4.58
2940 3860 0.976073 CCTCGGGGTTAAGAGGCTCA 60.976 60.000 18.26 0.00 46.23 4.26
2941 3861 1.123928 CTCGGGGTTAAGAGGCTCAT 58.876 55.000 18.26 7.49 0.00 2.90
2943 3863 0.249489 CGGGGTTAAGAGGCTCATCG 60.249 60.000 18.26 0.03 0.00 3.84
2944 3864 0.831307 GGGGTTAAGAGGCTCATCGT 59.169 55.000 18.26 1.23 0.00 3.73
2946 3866 1.480954 GGGTTAAGAGGCTCATCGTCA 59.519 52.381 18.26 0.00 32.24 4.35
2948 3868 2.482142 GGTTAAGAGGCTCATCGTCAGG 60.482 54.545 18.26 0.00 32.24 3.86
2949 3869 1.403814 TAAGAGGCTCATCGTCAGGG 58.596 55.000 18.26 0.00 32.24 4.45
2950 3870 1.333636 AAGAGGCTCATCGTCAGGGG 61.334 60.000 18.26 0.00 32.24 4.79
2952 3872 4.899239 GGCTCATCGTCAGGGGCG 62.899 72.222 0.00 0.00 0.00 6.13
2955 3875 1.443407 CTCATCGTCAGGGGCGATT 59.557 57.895 2.60 0.00 45.38 3.34
2959 3879 1.613317 ATCGTCAGGGGCGATTCACA 61.613 55.000 0.00 0.00 45.38 3.58
2961 3881 2.109126 GTCAGGGGCGATTCACAGC 61.109 63.158 0.00 0.00 0.00 4.40
2962 3882 2.270205 CAGGGGCGATTCACAGCT 59.730 61.111 0.00 0.00 0.00 4.24
2963 3883 1.377725 CAGGGGCGATTCACAGCTT 60.378 57.895 0.00 0.00 0.00 3.74
2966 3886 1.648467 GGGGCGATTCACAGCTTGTC 61.648 60.000 0.00 0.00 0.00 3.18
2967 3887 0.955428 GGGCGATTCACAGCTTGTCA 60.955 55.000 0.00 0.00 0.00 3.58
2968 3888 1.089920 GGCGATTCACAGCTTGTCAT 58.910 50.000 0.00 0.00 0.00 3.06
2971 3891 1.325640 CGATTCACAGCTTGTCATCCG 59.674 52.381 0.00 0.00 0.00 4.18
2972 3892 1.667724 GATTCACAGCTTGTCATCCGG 59.332 52.381 0.00 0.00 0.00 5.14
2975 3895 1.376424 ACAGCTTGTCATCCGGCAG 60.376 57.895 0.00 0.00 0.00 4.85
2976 3896 1.078918 CAGCTTGTCATCCGGCAGA 60.079 57.895 0.00 0.00 0.00 4.26
2977 3897 0.463295 CAGCTTGTCATCCGGCAGAT 60.463 55.000 0.00 0.00 34.66 2.90
2978 3898 0.179062 AGCTTGTCATCCGGCAGATC 60.179 55.000 0.00 0.00 30.59 2.75
2979 3899 0.462581 GCTTGTCATCCGGCAGATCA 60.463 55.000 0.00 0.00 30.59 2.92
2980 3900 2.013563 GCTTGTCATCCGGCAGATCAA 61.014 52.381 0.00 4.08 30.59 2.57
2981 3901 2.569059 CTTGTCATCCGGCAGATCAAT 58.431 47.619 0.00 0.00 30.59 2.57
2982 3902 3.732212 CTTGTCATCCGGCAGATCAATA 58.268 45.455 0.00 0.00 30.59 1.90
2983 3903 3.836365 TGTCATCCGGCAGATCAATAA 57.164 42.857 0.00 0.00 30.59 1.40
2984 3904 3.732212 TGTCATCCGGCAGATCAATAAG 58.268 45.455 0.00 0.00 30.59 1.73
2985 3905 3.070018 GTCATCCGGCAGATCAATAAGG 58.930 50.000 0.00 0.00 30.59 2.69
2986 3906 2.972021 TCATCCGGCAGATCAATAAGGA 59.028 45.455 0.00 0.00 30.59 3.36
2987 3907 3.584406 TCATCCGGCAGATCAATAAGGAT 59.416 43.478 0.00 0.00 37.48 3.24
2988 3908 4.042062 TCATCCGGCAGATCAATAAGGATT 59.958 41.667 0.00 0.00 35.09 3.01
2989 3909 5.248248 TCATCCGGCAGATCAATAAGGATTA 59.752 40.000 0.00 0.00 35.09 1.75
2990 3910 5.762179 TCCGGCAGATCAATAAGGATTAT 57.238 39.130 0.00 0.00 44.67 1.28
2991 3911 5.734720 TCCGGCAGATCAATAAGGATTATC 58.265 41.667 0.00 0.00 41.21 1.75
2992 3912 5.248248 TCCGGCAGATCAATAAGGATTATCA 59.752 40.000 0.00 0.00 41.21 2.15
2993 3913 5.939883 CCGGCAGATCAATAAGGATTATCAA 59.060 40.000 0.00 0.00 41.21 2.57
2994 3914 6.430925 CCGGCAGATCAATAAGGATTATCAAA 59.569 38.462 0.00 0.00 41.21 2.69
2995 3915 7.361542 CCGGCAGATCAATAAGGATTATCAAAG 60.362 40.741 0.00 0.00 41.21 2.77
2996 3916 7.311408 GGCAGATCAATAAGGATTATCAAAGC 58.689 38.462 0.00 0.00 41.21 3.51
2998 3918 7.576477 GCAGATCAATAAGGATTATCAAAGCCC 60.576 40.741 0.00 0.00 41.21 5.19
3001 3921 8.731591 ATCAATAAGGATTATCAAAGCCCATT 57.268 30.769 0.00 0.00 41.21 3.16
3003 3923 7.784073 TCAATAAGGATTATCAAAGCCCATTGA 59.216 33.333 12.41 12.41 43.62 2.57
3005 3925 6.415206 AAGGATTATCAAAGCCCATTGATG 57.585 37.500 16.17 0.00 46.63 3.07
3006 3926 4.836736 AGGATTATCAAAGCCCATTGATGG 59.163 41.667 16.17 2.93 46.63 3.51
3024 3944 4.038042 TGATGGAAGCCTACGTAGATGAAG 59.962 45.833 24.15 7.75 0.00 3.02
3033 3953 5.341617 CCTACGTAGATGAAGTGAGGAAAC 58.658 45.833 24.15 0.00 0.00 2.78
3035 3955 4.810790 ACGTAGATGAAGTGAGGAAACTG 58.189 43.478 0.00 0.00 44.43 3.16
3037 3957 4.082190 CGTAGATGAAGTGAGGAAACTGGA 60.082 45.833 0.00 0.00 44.43 3.86
3038 3958 4.550076 AGATGAAGTGAGGAAACTGGAG 57.450 45.455 0.00 0.00 44.43 3.86
3041 3961 2.634940 TGAAGTGAGGAAACTGGAGGAG 59.365 50.000 0.00 0.00 44.43 3.69
3042 3962 0.980423 AGTGAGGAAACTGGAGGAGC 59.020 55.000 0.00 0.00 44.43 4.70
3043 3963 0.390472 GTGAGGAAACTGGAGGAGCG 60.390 60.000 0.00 0.00 44.43 5.03
3044 3964 1.448717 GAGGAAACTGGAGGAGCGC 60.449 63.158 0.00 0.00 44.43 5.92
3045 3965 1.893919 GAGGAAACTGGAGGAGCGCT 61.894 60.000 11.27 11.27 44.43 5.92
3047 3967 0.606673 GGAAACTGGAGGAGCGCTTT 60.607 55.000 13.26 2.43 0.00 3.51
3048 3968 0.519077 GAAACTGGAGGAGCGCTTTG 59.481 55.000 13.26 0.89 0.00 2.77
3049 3969 0.108585 AAACTGGAGGAGCGCTTTGA 59.891 50.000 13.26 0.00 0.00 2.69
3051 3971 0.392193 ACTGGAGGAGCGCTTTGATG 60.392 55.000 13.26 3.43 0.00 3.07
3052 3972 1.078214 TGGAGGAGCGCTTTGATGG 60.078 57.895 13.26 0.00 0.00 3.51
3055 3975 1.202698 GGAGGAGCGCTTTGATGGTAT 60.203 52.381 13.26 0.00 0.00 2.73
3056 3976 2.037251 GGAGGAGCGCTTTGATGGTATA 59.963 50.000 13.26 0.00 0.00 1.47
3057 3977 3.060602 GAGGAGCGCTTTGATGGTATAC 58.939 50.000 13.26 0.00 0.00 1.47
3058 3978 2.434336 AGGAGCGCTTTGATGGTATACA 59.566 45.455 13.26 0.00 0.00 2.29
3059 3979 2.802816 GGAGCGCTTTGATGGTATACAG 59.197 50.000 13.26 0.00 0.00 2.74
3060 3980 2.802816 GAGCGCTTTGATGGTATACAGG 59.197 50.000 13.26 0.00 0.00 4.00
3062 3982 2.560504 CGCTTTGATGGTATACAGGCA 58.439 47.619 5.01 0.00 0.00 4.75
3063 3983 2.545526 CGCTTTGATGGTATACAGGCAG 59.454 50.000 5.01 0.00 0.00 4.85
3064 3984 3.741075 CGCTTTGATGGTATACAGGCAGA 60.741 47.826 5.01 0.00 0.00 4.26
3065 3985 3.812053 GCTTTGATGGTATACAGGCAGAG 59.188 47.826 5.01 5.03 0.00 3.35
3066 3986 3.475566 TTGATGGTATACAGGCAGAGC 57.524 47.619 5.01 0.00 0.00 4.09
3067 3987 2.397597 TGATGGTATACAGGCAGAGCA 58.602 47.619 5.01 0.00 0.00 4.26
3068 3988 2.974794 TGATGGTATACAGGCAGAGCAT 59.025 45.455 5.01 0.00 30.99 3.79
3069 3989 2.916702 TGGTATACAGGCAGAGCATG 57.083 50.000 5.01 1.77 46.22 4.06
3074 3994 2.124403 CAGGCAGAGCATGTCCCC 60.124 66.667 0.00 0.00 35.52 4.81
3075 3995 3.415087 AGGCAGAGCATGTCCCCC 61.415 66.667 0.00 0.00 32.19 5.40
3076 3996 4.864334 GGCAGAGCATGTCCCCCG 62.864 72.222 0.00 0.00 0.00 5.73
3077 3997 3.785859 GCAGAGCATGTCCCCCGA 61.786 66.667 0.00 0.00 0.00 5.14
3078 3998 2.503061 CAGAGCATGTCCCCCGAG 59.497 66.667 0.00 0.00 0.00 4.63
3079 3999 2.039624 AGAGCATGTCCCCCGAGT 59.960 61.111 0.00 0.00 0.00 4.18
3080 4000 2.187946 GAGCATGTCCCCCGAGTG 59.812 66.667 0.00 0.00 0.00 3.51
3083 5412 2.903357 CATGTCCCCCGAGTGGAG 59.097 66.667 0.00 0.00 37.49 3.86
3086 5415 1.265454 ATGTCCCCCGAGTGGAGAAC 61.265 60.000 0.00 0.00 37.49 3.01
3088 5417 2.678934 CCCCCGAGTGGAGAACGA 60.679 66.667 0.00 0.00 37.49 3.85
3089 5418 2.572284 CCCCGAGTGGAGAACGAC 59.428 66.667 0.00 0.00 37.49 4.34
3091 5420 1.605058 CCCCGAGTGGAGAACGACAT 61.605 60.000 0.00 0.00 37.49 3.06
3095 5424 1.079503 GAGTGGAGAACGACATTGCC 58.920 55.000 0.00 0.00 0.00 4.52
3097 5426 0.669318 GTGGAGAACGACATTGCCGA 60.669 55.000 0.00 0.00 0.00 5.54
3102 5431 0.997196 GAACGACATTGCCGACTACC 59.003 55.000 0.00 0.00 0.00 3.18
3114 5443 1.211969 GACTACCTGTCGAAGCGCA 59.788 57.895 11.47 0.00 35.81 6.09
3116 5445 1.213013 CTACCTGTCGAAGCGCACT 59.787 57.895 11.47 0.00 0.00 4.40
3118 5447 3.782244 CCTGTCGAAGCGCACTGC 61.782 66.667 11.47 0.00 46.98 4.40
3135 5464 3.450028 GCTCTCAAGCTACCTGTGG 57.550 57.895 0.00 0.00 45.55 4.17
3139 5468 1.623811 TCTCAAGCTACCTGTGGAACC 59.376 52.381 0.00 0.00 34.36 3.62
3140 5469 1.347707 CTCAAGCTACCTGTGGAACCA 59.652 52.381 0.00 0.00 34.36 3.67
3141 5470 1.347707 TCAAGCTACCTGTGGAACCAG 59.652 52.381 0.00 0.00 34.36 4.00
3149 5478 3.223674 CCTGTGGAACCAGGTACTTTT 57.776 47.619 0.00 0.00 45.81 2.27
3151 5480 3.551846 CTGTGGAACCAGGTACTTTTGT 58.448 45.455 0.00 0.00 28.26 2.83
3152 5481 3.283751 TGTGGAACCAGGTACTTTTGTG 58.716 45.455 0.00 0.00 28.26 3.33
3153 5482 2.034179 GTGGAACCAGGTACTTTTGTGC 59.966 50.000 0.00 0.00 34.60 4.57
3157 5486 2.218603 ACCAGGTACTTTTGTGCTTCG 58.781 47.619 0.00 0.00 34.60 3.79
3158 5487 1.535462 CCAGGTACTTTTGTGCTTCGG 59.465 52.381 0.00 0.00 34.60 4.30
3161 5490 3.810941 CAGGTACTTTTGTGCTTCGGTTA 59.189 43.478 0.00 0.00 34.60 2.85
3162 5491 4.273969 CAGGTACTTTTGTGCTTCGGTTAA 59.726 41.667 0.00 0.00 34.60 2.01
3163 5492 4.274214 AGGTACTTTTGTGCTTCGGTTAAC 59.726 41.667 0.00 0.00 27.25 2.01
3168 5497 3.955771 TTGTGCTTCGGTTAACTCAAC 57.044 42.857 5.42 0.00 36.32 3.18
3178 5507 2.695359 GTTAACTCAACCATCCGCTGA 58.305 47.619 0.00 0.00 0.00 4.26
3181 5510 0.321653 ACTCAACCATCCGCTGAACC 60.322 55.000 0.00 0.00 0.00 3.62
3182 5511 0.321564 CTCAACCATCCGCTGAACCA 60.322 55.000 0.00 0.00 0.00 3.67
3183 5512 0.327924 TCAACCATCCGCTGAACCAT 59.672 50.000 0.00 0.00 0.00 3.55
3184 5513 0.734889 CAACCATCCGCTGAACCATC 59.265 55.000 0.00 0.00 0.00 3.51
3186 5515 0.327924 ACCATCCGCTGAACCATCAA 59.672 50.000 0.00 0.00 34.49 2.57
3190 5519 0.684535 TCCGCTGAACCATCAACAGA 59.315 50.000 0.00 0.00 34.49 3.41
3191 5520 1.081892 CCGCTGAACCATCAACAGAG 58.918 55.000 0.00 0.00 34.49 3.35
3192 5521 1.609061 CCGCTGAACCATCAACAGAGT 60.609 52.381 0.00 0.00 34.49 3.24
3193 5522 2.353704 CCGCTGAACCATCAACAGAGTA 60.354 50.000 0.00 0.00 34.49 2.59
3194 5523 2.926200 CGCTGAACCATCAACAGAGTAG 59.074 50.000 0.00 0.00 34.49 2.57
3196 5525 4.569943 GCTGAACCATCAACAGAGTAGAA 58.430 43.478 0.00 0.00 34.49 2.10
3197 5526 4.390297 GCTGAACCATCAACAGAGTAGAAC 59.610 45.833 0.00 0.00 34.49 3.01
3198 5527 5.541845 CTGAACCATCAACAGAGTAGAACA 58.458 41.667 0.00 0.00 34.49 3.18
3199 5528 5.924356 TGAACCATCAACAGAGTAGAACAA 58.076 37.500 0.00 0.00 30.99 2.83
3200 5529 5.991606 TGAACCATCAACAGAGTAGAACAAG 59.008 40.000 0.00 0.00 30.99 3.16
3202 5531 3.369147 CCATCAACAGAGTAGAACAAGCG 59.631 47.826 0.00 0.00 0.00 4.68
3203 5532 4.237724 CATCAACAGAGTAGAACAAGCGA 58.762 43.478 0.00 0.00 0.00 4.93
3204 5533 4.316205 TCAACAGAGTAGAACAAGCGAA 57.684 40.909 0.00 0.00 0.00 4.70
3205 5534 4.299155 TCAACAGAGTAGAACAAGCGAAG 58.701 43.478 0.00 0.00 0.00 3.79
3206 5535 3.305398 ACAGAGTAGAACAAGCGAAGG 57.695 47.619 0.00 0.00 0.00 3.46
3207 5536 2.891580 ACAGAGTAGAACAAGCGAAGGA 59.108 45.455 0.00 0.00 0.00 3.36
3208 5537 3.321111 ACAGAGTAGAACAAGCGAAGGAA 59.679 43.478 0.00 0.00 0.00 3.36
3209 5538 3.923461 CAGAGTAGAACAAGCGAAGGAAG 59.077 47.826 0.00 0.00 0.00 3.46
3212 5541 2.171341 AGAACAAGCGAAGGAAGTCC 57.829 50.000 0.00 0.00 0.00 3.85
3213 5542 0.790814 GAACAAGCGAAGGAAGTCCG 59.209 55.000 0.00 0.00 42.08 4.79
3214 5543 0.602905 AACAAGCGAAGGAAGTCCGG 60.603 55.000 0.00 0.00 42.08 5.14
3215 5544 2.047179 AAGCGAAGGAAGTCCGGC 60.047 61.111 0.00 0.00 42.08 6.13
3216 5545 3.607370 AAGCGAAGGAAGTCCGGCC 62.607 63.158 0.00 0.00 42.08 6.13
3218 5547 4.468689 CGAAGGAAGTCCGGCCCC 62.469 72.222 0.00 0.00 42.08 5.80
3219 5548 4.468689 GAAGGAAGTCCGGCCCCG 62.469 72.222 0.00 0.00 42.08 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
348 350 1.399089 CTTCTTCGTCCGGAGTCTCTC 59.601 57.143 3.06 0.00 0.00 3.20
353 355 2.971452 GCCTTCTTCGTCCGGAGT 59.029 61.111 3.06 0.00 0.00 3.85
432 434 1.153549 GGTAAGCTCTCCACGCCAG 60.154 63.158 0.00 0.00 0.00 4.85
468 479 1.443802 GCTCCGTTTTCCCTCTTCTG 58.556 55.000 0.00 0.00 0.00 3.02
478 489 0.395312 TTTCCTCCTCGCTCCGTTTT 59.605 50.000 0.00 0.00 0.00 2.43
482 493 2.184579 GGTTTCCTCCTCGCTCCG 59.815 66.667 0.00 0.00 0.00 4.63
483 494 0.686769 TAGGGTTTCCTCCTCGCTCC 60.687 60.000 0.00 0.00 43.66 4.70
484 495 0.747852 CTAGGGTTTCCTCCTCGCTC 59.252 60.000 0.00 0.00 43.66 5.03
485 496 0.688087 CCTAGGGTTTCCTCCTCGCT 60.688 60.000 0.00 0.00 43.66 4.93
487 498 2.517609 CCCTAGGGTTTCCTCCTCG 58.482 63.158 20.88 0.00 43.66 4.63
507 519 1.070289 GTCCTATAAAGTCCTGCCCCG 59.930 57.143 0.00 0.00 0.00 5.73
508 520 1.070289 CGTCCTATAAAGTCCTGCCCC 59.930 57.143 0.00 0.00 0.00 5.80
510 522 3.492829 CCTTCGTCCTATAAAGTCCTGCC 60.493 52.174 0.00 0.00 0.00 4.85
512 524 3.958798 TCCCTTCGTCCTATAAAGTCCTG 59.041 47.826 0.00 0.00 0.00 3.86
513 525 4.216708 CTCCCTTCGTCCTATAAAGTCCT 58.783 47.826 0.00 0.00 0.00 3.85
515 527 3.383825 TGCTCCCTTCGTCCTATAAAGTC 59.616 47.826 0.00 0.00 0.00 3.01
517 529 3.800604 GCTGCTCCCTTCGTCCTATAAAG 60.801 52.174 0.00 0.00 0.00 1.85
548 562 2.106683 GGCAGTCCGGTCGATTTGG 61.107 63.158 0.00 0.00 0.00 3.28
559 573 4.436998 CCTCCACGTCGGCAGTCC 62.437 72.222 0.00 0.00 33.14 3.85
565 579 4.135153 CCAGAGCCTCCACGTCGG 62.135 72.222 0.00 0.00 0.00 4.79
574 588 2.373707 GGCAGGACATCCAGAGCCT 61.374 63.158 17.13 0.00 43.13 4.58
575 589 2.191641 GGCAGGACATCCAGAGCC 59.808 66.667 11.69 11.69 41.22 4.70
576 590 1.676678 TACGGCAGGACATCCAGAGC 61.677 60.000 0.00 1.32 38.89 4.09
588 602 0.457851 CTCTTCTCCCTGTACGGCAG 59.542 60.000 0.00 2.74 44.63 4.85
600 614 4.676723 CGTTCCTCTGTTCATCCTCTTCTC 60.677 50.000 0.00 0.00 0.00 2.87
601 615 3.194542 CGTTCCTCTGTTCATCCTCTTCT 59.805 47.826 0.00 0.00 0.00 2.85
604 618 1.827969 CCGTTCCTCTGTTCATCCTCT 59.172 52.381 0.00 0.00 0.00 3.69
607 621 1.726853 CACCGTTCCTCTGTTCATCC 58.273 55.000 0.00 0.00 0.00 3.51
610 624 0.249868 CAGCACCGTTCCTCTGTTCA 60.250 55.000 0.00 0.00 0.00 3.18
611 625 0.033504 TCAGCACCGTTCCTCTGTTC 59.966 55.000 0.00 0.00 0.00 3.18
612 626 0.687354 ATCAGCACCGTTCCTCTGTT 59.313 50.000 0.00 0.00 0.00 3.16
613 627 0.036952 CATCAGCACCGTTCCTCTGT 60.037 55.000 0.00 0.00 0.00 3.41
614 628 0.742281 CCATCAGCACCGTTCCTCTG 60.742 60.000 0.00 0.00 0.00 3.35
615 629 1.599047 CCATCAGCACCGTTCCTCT 59.401 57.895 0.00 0.00 0.00 3.69
616 630 1.450312 CCCATCAGCACCGTTCCTC 60.450 63.158 0.00 0.00 0.00 3.71
617 631 2.671070 CCCATCAGCACCGTTCCT 59.329 61.111 0.00 0.00 0.00 3.36
618 632 3.134127 GCCCATCAGCACCGTTCC 61.134 66.667 0.00 0.00 0.00 3.62
619 633 2.045926 AGCCCATCAGCACCGTTC 60.046 61.111 0.00 0.00 34.23 3.95
620 634 2.360350 CAGCCCATCAGCACCGTT 60.360 61.111 0.00 0.00 34.23 4.44
621 635 4.415150 CCAGCCCATCAGCACCGT 62.415 66.667 0.00 0.00 34.23 4.83
622 636 2.898920 AATCCAGCCCATCAGCACCG 62.899 60.000 0.00 0.00 34.23 4.94
623 637 1.076485 AATCCAGCCCATCAGCACC 60.076 57.895 0.00 0.00 34.23 5.01
624 638 1.442526 CGAATCCAGCCCATCAGCAC 61.443 60.000 0.00 0.00 34.23 4.40
625 639 1.153107 CGAATCCAGCCCATCAGCA 60.153 57.895 0.00 0.00 34.23 4.41
626 640 0.464373 TTCGAATCCAGCCCATCAGC 60.464 55.000 0.00 0.00 0.00 4.26
627 641 1.303309 GTTCGAATCCAGCCCATCAG 58.697 55.000 0.00 0.00 0.00 2.90
628 642 0.461870 CGTTCGAATCCAGCCCATCA 60.462 55.000 0.00 0.00 0.00 3.07
629 643 1.160329 CCGTTCGAATCCAGCCCATC 61.160 60.000 0.00 0.00 0.00 3.51
630 644 1.153168 CCGTTCGAATCCAGCCCAT 60.153 57.895 0.00 0.00 0.00 4.00
631 645 2.267642 CCGTTCGAATCCAGCCCA 59.732 61.111 0.00 0.00 0.00 5.36
632 646 1.963464 TACCCGTTCGAATCCAGCCC 61.963 60.000 0.00 0.00 0.00 5.19
633 647 0.108041 TTACCCGTTCGAATCCAGCC 60.108 55.000 0.00 0.00 0.00 4.85
634 648 1.134907 TCTTACCCGTTCGAATCCAGC 60.135 52.381 0.00 0.00 0.00 4.85
635 649 2.426024 TCTCTTACCCGTTCGAATCCAG 59.574 50.000 0.00 0.00 0.00 3.86
636 650 2.449464 TCTCTTACCCGTTCGAATCCA 58.551 47.619 0.00 0.00 0.00 3.41
637 651 3.119209 ACTTCTCTTACCCGTTCGAATCC 60.119 47.826 0.00 0.00 0.00 3.01
638 652 3.858238 CACTTCTCTTACCCGTTCGAATC 59.142 47.826 0.00 0.00 0.00 2.52
639 653 3.368116 CCACTTCTCTTACCCGTTCGAAT 60.368 47.826 0.00 0.00 0.00 3.34
640 654 2.029649 CCACTTCTCTTACCCGTTCGAA 60.030 50.000 0.00 0.00 0.00 3.71
641 655 1.542915 CCACTTCTCTTACCCGTTCGA 59.457 52.381 0.00 0.00 0.00 3.71
642 656 1.992170 CCACTTCTCTTACCCGTTCG 58.008 55.000 0.00 0.00 0.00 3.95
643 657 1.275573 AGCCACTTCTCTTACCCGTTC 59.724 52.381 0.00 0.00 0.00 3.95
644 658 1.349067 AGCCACTTCTCTTACCCGTT 58.651 50.000 0.00 0.00 0.00 4.44
645 659 1.002087 CAAGCCACTTCTCTTACCCGT 59.998 52.381 0.00 0.00 0.00 5.28
646 660 1.726853 CAAGCCACTTCTCTTACCCG 58.273 55.000 0.00 0.00 0.00 5.28
647 661 1.003696 AGCAAGCCACTTCTCTTACCC 59.996 52.381 0.00 0.00 0.00 3.69
648 662 2.079925 CAGCAAGCCACTTCTCTTACC 58.920 52.381 0.00 0.00 0.00 2.85
649 663 2.772287 ACAGCAAGCCACTTCTCTTAC 58.228 47.619 0.00 0.00 0.00 2.34
650 664 3.141398 CAACAGCAAGCCACTTCTCTTA 58.859 45.455 0.00 0.00 0.00 2.10
651 665 1.952296 CAACAGCAAGCCACTTCTCTT 59.048 47.619 0.00 0.00 0.00 2.85
652 666 1.602311 CAACAGCAAGCCACTTCTCT 58.398 50.000 0.00 0.00 0.00 3.10
653 667 0.595095 CCAACAGCAAGCCACTTCTC 59.405 55.000 0.00 0.00 0.00 2.87
654 668 0.106519 ACCAACAGCAAGCCACTTCT 60.107 50.000 0.00 0.00 0.00 2.85
655 669 0.312102 GACCAACAGCAAGCCACTTC 59.688 55.000 0.00 0.00 0.00 3.01
656 670 1.447317 CGACCAACAGCAAGCCACTT 61.447 55.000 0.00 0.00 0.00 3.16
657 671 1.893808 CGACCAACAGCAAGCCACT 60.894 57.895 0.00 0.00 0.00 4.00
658 672 2.639286 CGACCAACAGCAAGCCAC 59.361 61.111 0.00 0.00 0.00 5.01
659 673 2.594303 CCGACCAACAGCAAGCCA 60.594 61.111 0.00 0.00 0.00 4.75
660 674 4.043200 GCCGACCAACAGCAAGCC 62.043 66.667 0.00 0.00 0.00 4.35
661 675 2.980233 AGCCGACCAACAGCAAGC 60.980 61.111 0.00 0.00 0.00 4.01
662 676 1.893808 ACAGCCGACCAACAGCAAG 60.894 57.895 0.00 0.00 0.00 4.01
663 677 2.186160 CACAGCCGACCAACAGCAA 61.186 57.895 0.00 0.00 0.00 3.91
664 678 2.591429 CACAGCCGACCAACAGCA 60.591 61.111 0.00 0.00 0.00 4.41
665 679 0.882927 TAACACAGCCGACCAACAGC 60.883 55.000 0.00 0.00 0.00 4.40
666 680 1.148310 CTAACACAGCCGACCAACAG 58.852 55.000 0.00 0.00 0.00 3.16
667 681 0.753867 TCTAACACAGCCGACCAACA 59.246 50.000 0.00 0.00 0.00 3.33
668 682 1.000506 TCTCTAACACAGCCGACCAAC 59.999 52.381 0.00 0.00 0.00 3.77
669 683 1.000506 GTCTCTAACACAGCCGACCAA 59.999 52.381 0.00 0.00 0.00 3.67
670 684 0.601558 GTCTCTAACACAGCCGACCA 59.398 55.000 0.00 0.00 0.00 4.02
671 685 0.108756 GGTCTCTAACACAGCCGACC 60.109 60.000 0.00 0.00 37.39 4.79
672 686 0.601558 TGGTCTCTAACACAGCCGAC 59.398 55.000 0.00 0.00 0.00 4.79
673 687 1.000506 GTTGGTCTCTAACACAGCCGA 59.999 52.381 0.00 0.00 0.00 5.54
674 688 1.270094 TGTTGGTCTCTAACACAGCCG 60.270 52.381 0.00 0.00 33.43 5.52
675 689 2.037251 TCTGTTGGTCTCTAACACAGCC 59.963 50.000 0.00 0.00 34.58 4.85
676 690 3.321497 CTCTGTTGGTCTCTAACACAGC 58.679 50.000 0.00 0.00 34.58 4.40
677 691 3.006323 AGCTCTGTTGGTCTCTAACACAG 59.994 47.826 0.00 0.00 34.58 3.66
678 692 2.965831 AGCTCTGTTGGTCTCTAACACA 59.034 45.455 0.00 0.00 34.58 3.72
679 693 3.669251 AGCTCTGTTGGTCTCTAACAC 57.331 47.619 0.00 0.00 34.58 3.32
851 900 3.877508 GGACTGCCTGATACCATGTAAAC 59.122 47.826 0.00 0.00 0.00 2.01
1049 1121 4.678423 TCCGGATGATGGACTCGT 57.322 55.556 0.00 0.00 0.00 4.18
1324 1397 4.897509 TCGAGCCATAAATCCATGAGAT 57.102 40.909 0.00 0.00 36.48 2.75
1462 1535 5.940192 TGAGTTGTGTTGCGAAATTCTAT 57.060 34.783 0.00 0.00 0.00 1.98
1463 1536 5.277779 CCTTGAGTTGTGTTGCGAAATTCTA 60.278 40.000 0.00 0.00 0.00 2.10
1692 1765 0.517316 CGGTCTTTTTCTGGGCTTCG 59.483 55.000 0.00 0.00 0.00 3.79
1896 1972 2.880879 CGACGACCATGACCGCAG 60.881 66.667 0.00 0.00 0.00 5.18
1902 1978 0.248336 GTGTATCGCGACGACCATGA 60.248 55.000 12.93 0.00 39.18 3.07
2283 2389 4.096984 GTGTGAGCATTGGAAGGGATAAAG 59.903 45.833 0.00 0.00 0.00 1.85
2366 2472 1.431243 AGAGAGGGTTGGACAGAGAGT 59.569 52.381 0.00 0.00 0.00 3.24
2434 2540 3.062763 CAGTAGTGAGTTTGCAGACAGG 58.937 50.000 10.36 0.00 0.00 4.00
2532 2638 0.179018 GGGTCCGGAGCTATTGCATT 60.179 55.000 31.09 0.00 42.74 3.56
2832 3752 1.213926 GGGAAAGTGCATCTGGATCCT 59.786 52.381 14.23 0.00 0.00 3.24
2839 3759 1.988107 TCTCCTTGGGAAAGTGCATCT 59.012 47.619 0.00 0.00 0.00 2.90
2840 3760 2.496899 TCTCCTTGGGAAAGTGCATC 57.503 50.000 0.00 0.00 0.00 3.91
2843 3763 2.087646 GACATCTCCTTGGGAAAGTGC 58.912 52.381 0.00 0.00 0.00 4.40
2844 3764 2.040278 TGGACATCTCCTTGGGAAAGTG 59.960 50.000 0.00 0.00 37.48 3.16
2856 3776 3.307242 GCAGTATTGTTCGTGGACATCTC 59.693 47.826 0.00 0.00 0.00 2.75
2857 3777 3.055819 AGCAGTATTGTTCGTGGACATCT 60.056 43.478 0.00 0.00 0.00 2.90
2858 3778 3.062639 CAGCAGTATTGTTCGTGGACATC 59.937 47.826 0.00 0.00 0.00 3.06
2861 3781 2.683968 TCAGCAGTATTGTTCGTGGAC 58.316 47.619 0.00 0.00 0.00 4.02
2864 3784 4.561213 TCGTATTCAGCAGTATTGTTCGTG 59.439 41.667 0.00 0.00 0.00 4.35
2865 3785 4.740268 TCGTATTCAGCAGTATTGTTCGT 58.260 39.130 0.00 0.00 0.00 3.85
2867 3787 4.508124 CCCTCGTATTCAGCAGTATTGTTC 59.492 45.833 0.00 0.00 0.00 3.18
2869 3789 3.181465 CCCCTCGTATTCAGCAGTATTGT 60.181 47.826 0.00 0.00 0.00 2.71
2871 3791 2.224305 GCCCCTCGTATTCAGCAGTATT 60.224 50.000 0.00 0.00 0.00 1.89
2873 3793 0.750850 GCCCCTCGTATTCAGCAGTA 59.249 55.000 0.00 0.00 0.00 2.74
2874 3794 0.978146 AGCCCCTCGTATTCAGCAGT 60.978 55.000 0.00 0.00 0.00 4.40
2876 3796 1.522092 CAGCCCCTCGTATTCAGCA 59.478 57.895 0.00 0.00 0.00 4.41
2877 3797 1.889573 GCAGCCCCTCGTATTCAGC 60.890 63.158 0.00 0.00 0.00 4.26
2878 3798 0.179000 AAGCAGCCCCTCGTATTCAG 59.821 55.000 0.00 0.00 0.00 3.02
2879 3799 0.107703 CAAGCAGCCCCTCGTATTCA 60.108 55.000 0.00 0.00 0.00 2.57
2881 3801 1.452108 GCAAGCAGCCCCTCGTATT 60.452 57.895 0.00 0.00 37.23 1.89
2882 3802 2.190578 GCAAGCAGCCCCTCGTAT 59.809 61.111 0.00 0.00 37.23 3.06
2891 3811 3.123620 CTGAGACCGGCAAGCAGC 61.124 66.667 0.00 0.00 44.65 5.25
2893 3813 2.244117 GATCCTGAGACCGGCAAGCA 62.244 60.000 0.00 0.00 0.00 3.91
2894 3814 1.522580 GATCCTGAGACCGGCAAGC 60.523 63.158 0.00 0.00 0.00 4.01
2895 3815 1.227089 CGATCCTGAGACCGGCAAG 60.227 63.158 0.00 0.00 0.00 4.01
2896 3816 2.892640 CGATCCTGAGACCGGCAA 59.107 61.111 0.00 0.00 0.00 4.52
2897 3817 3.838271 GCGATCCTGAGACCGGCA 61.838 66.667 0.00 0.00 0.00 5.69
2898 3818 4.933064 CGCGATCCTGAGACCGGC 62.933 72.222 0.00 0.00 0.00 6.13
2899 3819 4.271816 CCGCGATCCTGAGACCGG 62.272 72.222 8.23 0.00 0.00 5.28
2902 3822 2.279120 CTGCCGCGATCCTGAGAC 60.279 66.667 8.23 0.00 0.00 3.36
2903 3823 2.440247 TCTGCCGCGATCCTGAGA 60.440 61.111 8.23 0.00 0.00 3.27
2905 3825 3.838271 GGTCTGCCGCGATCCTGA 61.838 66.667 8.23 2.08 0.00 3.86
2907 3827 3.532155 GAGGTCTGCCGCGATCCT 61.532 66.667 8.23 7.47 40.50 3.24
2922 3842 1.069358 GATGAGCCTCTTAACCCCGAG 59.931 57.143 0.00 0.00 0.00 4.63
2923 3843 1.120530 GATGAGCCTCTTAACCCCGA 58.879 55.000 0.00 0.00 0.00 5.14
2925 3845 0.831307 ACGATGAGCCTCTTAACCCC 59.169 55.000 0.00 0.00 0.00 4.95
2927 3847 2.482142 CCTGACGATGAGCCTCTTAACC 60.482 54.545 0.00 0.00 0.00 2.85
2928 3848 2.482142 CCCTGACGATGAGCCTCTTAAC 60.482 54.545 0.00 0.00 0.00 2.01
2929 3849 1.757118 CCCTGACGATGAGCCTCTTAA 59.243 52.381 0.00 0.00 0.00 1.85
2930 3850 1.403814 CCCTGACGATGAGCCTCTTA 58.596 55.000 0.00 0.00 0.00 2.10
2932 3852 1.760086 CCCCTGACGATGAGCCTCT 60.760 63.158 0.00 0.00 0.00 3.69
2933 3853 2.818132 CCCCTGACGATGAGCCTC 59.182 66.667 0.00 0.00 0.00 4.70
2934 3854 3.474570 GCCCCTGACGATGAGCCT 61.475 66.667 0.00 0.00 0.00 4.58
2935 3855 4.899239 CGCCCCTGACGATGAGCC 62.899 72.222 0.00 0.00 0.00 4.70
2936 3856 3.838271 TCGCCCCTGACGATGAGC 61.838 66.667 0.00 0.00 33.96 4.26
2941 3861 2.225791 CTGTGAATCGCCCCTGACGA 62.226 60.000 0.00 0.00 44.75 4.20
2943 3863 2.109126 GCTGTGAATCGCCCCTGAC 61.109 63.158 0.00 0.00 0.00 3.51
2944 3864 1.841302 AAGCTGTGAATCGCCCCTGA 61.841 55.000 0.00 0.00 0.00 3.86
2946 3866 1.377725 CAAGCTGTGAATCGCCCCT 60.378 57.895 0.00 0.00 0.00 4.79
2948 3868 0.955428 TGACAAGCTGTGAATCGCCC 60.955 55.000 0.00 0.00 0.00 6.13
2949 3869 1.063174 GATGACAAGCTGTGAATCGCC 59.937 52.381 0.00 0.00 0.00 5.54
2950 3870 1.063174 GGATGACAAGCTGTGAATCGC 59.937 52.381 0.00 0.00 0.00 4.58
2952 3872 1.667724 CCGGATGACAAGCTGTGAATC 59.332 52.381 0.00 0.00 0.00 2.52
2955 3875 1.375908 GCCGGATGACAAGCTGTGA 60.376 57.895 5.05 0.00 0.00 3.58
2959 3879 0.179062 GATCTGCCGGATGACAAGCT 60.179 55.000 5.05 0.00 34.33 3.74
2961 3881 2.028420 TTGATCTGCCGGATGACAAG 57.972 50.000 5.05 0.00 34.33 3.16
2962 3882 2.715749 ATTGATCTGCCGGATGACAA 57.284 45.000 5.05 9.62 34.33 3.18
2963 3883 3.494924 CCTTATTGATCTGCCGGATGACA 60.495 47.826 5.05 0.68 34.33 3.58
2966 3886 3.407424 TCCTTATTGATCTGCCGGATG 57.593 47.619 5.05 0.00 34.33 3.51
2967 3887 4.647564 AATCCTTATTGATCTGCCGGAT 57.352 40.909 5.05 0.00 37.37 4.18
2968 3888 5.248248 TGATAATCCTTATTGATCTGCCGGA 59.752 40.000 5.05 0.00 0.00 5.14
2971 3891 7.311408 GCTTTGATAATCCTTATTGATCTGCC 58.689 38.462 0.00 0.00 0.00 4.85
2972 3892 7.311408 GGCTTTGATAATCCTTATTGATCTGC 58.689 38.462 0.00 0.00 0.00 4.26
2975 3895 7.765695 TGGGCTTTGATAATCCTTATTGATC 57.234 36.000 0.00 0.00 0.00 2.92
2976 3896 8.591072 CAATGGGCTTTGATAATCCTTATTGAT 58.409 33.333 0.00 0.00 32.35 2.57
2977 3897 7.784073 TCAATGGGCTTTGATAATCCTTATTGA 59.216 33.333 0.00 0.00 34.56 2.57
2978 3898 7.954835 TCAATGGGCTTTGATAATCCTTATTG 58.045 34.615 0.00 0.00 32.15 1.90
2979 3899 8.591072 CATCAATGGGCTTTGATAATCCTTATT 58.409 33.333 13.32 0.00 42.90 1.40
2980 3900 7.179694 CCATCAATGGGCTTTGATAATCCTTAT 59.820 37.037 13.32 0.00 42.90 1.73
2981 3901 6.494491 CCATCAATGGGCTTTGATAATCCTTA 59.506 38.462 13.32 0.00 42.90 2.69
2982 3902 5.306160 CCATCAATGGGCTTTGATAATCCTT 59.694 40.000 13.32 0.00 42.90 3.36
2983 3903 4.836736 CCATCAATGGGCTTTGATAATCCT 59.163 41.667 13.32 0.00 42.90 3.24
2984 3904 5.143376 CCATCAATGGGCTTTGATAATCC 57.857 43.478 13.32 0.00 42.90 3.01
2998 3918 4.322080 TCTACGTAGGCTTCCATCAATG 57.678 45.455 22.01 0.00 0.00 2.82
3001 3921 3.562182 TCATCTACGTAGGCTTCCATCA 58.438 45.455 22.01 0.00 0.00 3.07
3003 3923 3.961408 ACTTCATCTACGTAGGCTTCCAT 59.039 43.478 22.01 4.64 0.00 3.41
3004 3924 3.130516 CACTTCATCTACGTAGGCTTCCA 59.869 47.826 22.01 2.21 0.00 3.53
3005 3925 3.380637 TCACTTCATCTACGTAGGCTTCC 59.619 47.826 22.01 0.00 0.00 3.46
3006 3926 4.498345 CCTCACTTCATCTACGTAGGCTTC 60.498 50.000 22.01 0.00 0.00 3.86
3009 3929 2.950309 TCCTCACTTCATCTACGTAGGC 59.050 50.000 22.01 0.00 0.00 3.93
3011 3931 6.030849 CAGTTTCCTCACTTCATCTACGTAG 58.969 44.000 16.73 16.73 0.00 3.51
3012 3932 5.105877 CCAGTTTCCTCACTTCATCTACGTA 60.106 44.000 0.00 0.00 0.00 3.57
3013 3933 4.322049 CCAGTTTCCTCACTTCATCTACGT 60.322 45.833 0.00 0.00 0.00 3.57
3016 3936 4.467795 CCTCCAGTTTCCTCACTTCATCTA 59.532 45.833 0.00 0.00 0.00 1.98
3017 3937 3.262915 CCTCCAGTTTCCTCACTTCATCT 59.737 47.826 0.00 0.00 0.00 2.90
3024 3944 0.390472 CGCTCCTCCAGTTTCCTCAC 60.390 60.000 0.00 0.00 0.00 3.51
3033 3953 1.094073 CCATCAAAGCGCTCCTCCAG 61.094 60.000 12.06 0.00 0.00 3.86
3034 3954 1.078214 CCATCAAAGCGCTCCTCCA 60.078 57.895 12.06 0.00 0.00 3.86
3035 3955 0.178068 TACCATCAAAGCGCTCCTCC 59.822 55.000 12.06 0.00 0.00 4.30
3037 3957 2.434336 TGTATACCATCAAAGCGCTCCT 59.566 45.455 12.06 0.00 0.00 3.69
3038 3958 2.802816 CTGTATACCATCAAAGCGCTCC 59.197 50.000 12.06 0.00 0.00 4.70
3041 3961 1.264288 GCCTGTATACCATCAAAGCGC 59.736 52.381 0.00 0.00 0.00 5.92
3042 3962 2.545526 CTGCCTGTATACCATCAAAGCG 59.454 50.000 0.00 0.00 0.00 4.68
3043 3963 3.808728 TCTGCCTGTATACCATCAAAGC 58.191 45.455 0.00 0.00 0.00 3.51
3044 3964 3.812053 GCTCTGCCTGTATACCATCAAAG 59.188 47.826 0.00 0.00 0.00 2.77
3045 3965 3.199727 TGCTCTGCCTGTATACCATCAAA 59.800 43.478 0.00 0.00 0.00 2.69
3047 3967 2.397597 TGCTCTGCCTGTATACCATCA 58.602 47.619 0.00 0.00 0.00 3.07
3048 3968 3.244353 ACATGCTCTGCCTGTATACCATC 60.244 47.826 0.00 0.00 35.79 3.51
3049 3969 2.707791 ACATGCTCTGCCTGTATACCAT 59.292 45.455 0.00 0.00 35.79 3.55
3051 3971 2.548920 GGACATGCTCTGCCTGTATACC 60.549 54.545 0.00 0.00 37.51 2.73
3052 3972 2.548920 GGGACATGCTCTGCCTGTATAC 60.549 54.545 0.00 0.00 37.51 1.47
3055 3975 1.626356 GGGGACATGCTCTGCCTGTA 61.626 60.000 0.00 0.00 37.51 2.74
3056 3976 2.673523 GGGACATGCTCTGCCTGT 59.326 61.111 0.00 0.43 39.86 4.00
3057 3977 2.124403 GGGGACATGCTCTGCCTG 60.124 66.667 0.00 0.00 0.00 4.85
3058 3978 3.415087 GGGGGACATGCTCTGCCT 61.415 66.667 0.00 0.00 0.00 4.75
3059 3979 4.864334 CGGGGGACATGCTCTGCC 62.864 72.222 0.00 0.00 0.00 4.85
3060 3980 3.746949 CTCGGGGGACATGCTCTGC 62.747 68.421 0.00 0.00 0.00 4.26
3062 3982 2.039624 ACTCGGGGGACATGCTCT 59.960 61.111 0.00 0.00 0.00 4.09
3063 3983 2.187946 CACTCGGGGGACATGCTC 59.812 66.667 0.00 0.00 0.00 4.26
3064 3984 3.402681 CCACTCGGGGGACATGCT 61.403 66.667 0.00 0.00 0.00 3.79
3065 3985 3.391665 CTCCACTCGGGGGACATGC 62.392 68.421 0.00 0.00 41.01 4.06
3066 3986 1.685765 TCTCCACTCGGGGGACATG 60.686 63.158 0.00 0.00 43.00 3.21
3067 3987 2.777853 TCTCCACTCGGGGGACAT 59.222 61.111 0.00 0.00 43.00 3.06
3071 3991 2.678934 TCGTTCTCCACTCGGGGG 60.679 66.667 0.00 0.00 39.19 5.40
3072 3992 1.605058 ATGTCGTTCTCCACTCGGGG 61.605 60.000 0.00 0.00 37.22 5.73
3073 3993 0.246635 AATGTCGTTCTCCACTCGGG 59.753 55.000 0.00 0.00 38.37 5.14
3074 3994 1.350193 CAATGTCGTTCTCCACTCGG 58.650 55.000 0.00 0.00 0.00 4.63
3075 3995 0.716108 GCAATGTCGTTCTCCACTCG 59.284 55.000 0.00 0.00 0.00 4.18
3076 3996 1.079503 GGCAATGTCGTTCTCCACTC 58.920 55.000 0.00 0.00 0.00 3.51
3077 3997 0.670546 CGGCAATGTCGTTCTCCACT 60.671 55.000 0.00 0.00 0.00 4.00
3078 3998 0.669318 TCGGCAATGTCGTTCTCCAC 60.669 55.000 7.25 0.00 30.45 4.02
3079 3999 0.669318 GTCGGCAATGTCGTTCTCCA 60.669 55.000 7.25 0.00 30.45 3.86
3080 4000 0.389948 AGTCGGCAATGTCGTTCTCC 60.390 55.000 7.25 0.00 30.45 3.71
3083 5412 0.997196 GGTAGTCGGCAATGTCGTTC 59.003 55.000 7.25 2.09 30.45 3.95
3086 5415 0.108804 ACAGGTAGTCGGCAATGTCG 60.109 55.000 0.00 0.00 0.00 4.35
3088 5417 3.834732 GACAGGTAGTCGGCAATGT 57.165 52.632 0.00 0.00 37.53 2.71
3097 5426 1.080705 GTGCGCTTCGACAGGTAGT 60.081 57.895 9.73 0.00 0.00 2.73
3118 5447 2.354203 GGTTCCACAGGTAGCTTGAGAG 60.354 54.545 0.00 0.00 0.00 3.20
3121 5450 1.347707 CTGGTTCCACAGGTAGCTTGA 59.652 52.381 0.00 0.00 34.84 3.02
3122 5451 1.813513 CTGGTTCCACAGGTAGCTTG 58.186 55.000 0.00 0.00 34.84 4.01
3130 5459 3.315191 CACAAAAGTACCTGGTTCCACAG 59.685 47.826 3.84 0.00 38.21 3.66
3132 5461 2.034179 GCACAAAAGTACCTGGTTCCAC 59.966 50.000 3.84 0.00 0.00 4.02
3133 5462 2.092103 AGCACAAAAGTACCTGGTTCCA 60.092 45.455 3.84 0.00 0.00 3.53
3134 5463 2.583143 AGCACAAAAGTACCTGGTTCC 58.417 47.619 3.84 0.00 0.00 3.62
3135 5464 3.303791 CGAAGCACAAAAGTACCTGGTTC 60.304 47.826 3.84 0.00 37.64 3.62
3139 5468 2.218603 ACCGAAGCACAAAAGTACCTG 58.781 47.619 0.00 0.00 0.00 4.00
3140 5469 2.632987 ACCGAAGCACAAAAGTACCT 57.367 45.000 0.00 0.00 0.00 3.08
3141 5470 4.274214 AGTTAACCGAAGCACAAAAGTACC 59.726 41.667 0.88 0.00 0.00 3.34
3142 5471 5.006941 TGAGTTAACCGAAGCACAAAAGTAC 59.993 40.000 0.88 0.00 0.00 2.73
3144 5473 3.942748 TGAGTTAACCGAAGCACAAAAGT 59.057 39.130 0.88 0.00 0.00 2.66
3145 5474 4.545823 TGAGTTAACCGAAGCACAAAAG 57.454 40.909 0.88 0.00 0.00 2.27
3146 5475 4.664188 GTTGAGTTAACCGAAGCACAAAA 58.336 39.130 0.88 0.00 33.01 2.44
3158 5487 2.695359 TCAGCGGATGGTTGAGTTAAC 58.305 47.619 0.00 0.00 38.60 2.01
3161 5490 1.523758 GTTCAGCGGATGGTTGAGTT 58.476 50.000 0.00 0.00 37.18 3.01
3162 5491 0.321653 GGTTCAGCGGATGGTTGAGT 60.322 55.000 0.00 0.00 37.18 3.41
3163 5492 0.321564 TGGTTCAGCGGATGGTTGAG 60.322 55.000 0.00 0.00 37.18 3.02
3168 5497 0.734889 GTTGATGGTTCAGCGGATGG 59.265 55.000 0.00 0.00 32.27 3.51
3169 5498 1.399440 CTGTTGATGGTTCAGCGGATG 59.601 52.381 0.00 0.00 40.77 3.51
3170 5499 1.278985 TCTGTTGATGGTTCAGCGGAT 59.721 47.619 0.00 0.00 41.77 4.18
3171 5500 0.684535 TCTGTTGATGGTTCAGCGGA 59.315 50.000 0.00 0.00 43.65 5.54
3172 5501 1.081892 CTCTGTTGATGGTTCAGCGG 58.918 55.000 0.00 0.00 39.94 5.52
3173 5502 1.800805 ACTCTGTTGATGGTTCAGCG 58.199 50.000 0.00 0.00 35.98 5.18
3175 5504 5.541845 TGTTCTACTCTGTTGATGGTTCAG 58.458 41.667 0.00 0.00 32.27 3.02
3176 5505 5.545063 TGTTCTACTCTGTTGATGGTTCA 57.455 39.130 0.00 0.00 0.00 3.18
3178 5507 4.757149 GCTTGTTCTACTCTGTTGATGGTT 59.243 41.667 0.00 0.00 0.00 3.67
3181 5510 4.237724 TCGCTTGTTCTACTCTGTTGATG 58.762 43.478 0.00 0.00 0.00 3.07
3182 5511 4.521130 TCGCTTGTTCTACTCTGTTGAT 57.479 40.909 0.00 0.00 0.00 2.57
3183 5512 4.299155 CTTCGCTTGTTCTACTCTGTTGA 58.701 43.478 0.00 0.00 0.00 3.18
3184 5513 3.430218 CCTTCGCTTGTTCTACTCTGTTG 59.570 47.826 0.00 0.00 0.00 3.33
3186 5515 2.891580 TCCTTCGCTTGTTCTACTCTGT 59.108 45.455 0.00 0.00 0.00 3.41
3190 5519 3.306156 GGACTTCCTTCGCTTGTTCTACT 60.306 47.826 0.00 0.00 0.00 2.57
3191 5520 2.994578 GGACTTCCTTCGCTTGTTCTAC 59.005 50.000 0.00 0.00 0.00 2.59
3192 5521 2.352421 CGGACTTCCTTCGCTTGTTCTA 60.352 50.000 0.00 0.00 0.00 2.10
3193 5522 1.605712 CGGACTTCCTTCGCTTGTTCT 60.606 52.381 0.00 0.00 0.00 3.01
3194 5523 0.790814 CGGACTTCCTTCGCTTGTTC 59.209 55.000 0.00 0.00 0.00 3.18
3196 5525 1.004918 CCGGACTTCCTTCGCTTGT 60.005 57.895 0.00 0.00 0.00 3.16
3197 5526 2.391389 GCCGGACTTCCTTCGCTTG 61.391 63.158 5.05 0.00 0.00 4.01
3198 5527 2.047179 GCCGGACTTCCTTCGCTT 60.047 61.111 5.05 0.00 0.00 4.68
3199 5528 4.083862 GGCCGGACTTCCTTCGCT 62.084 66.667 5.05 0.00 0.00 4.93
3202 5531 4.468689 CGGGGCCGGACTTCCTTC 62.469 72.222 7.57 0.00 35.56 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.