Multiple sequence alignment - TraesCS4D01G047800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G047800 chr4D 100.000 7144 0 0 311 7454 23426645 23419502 0.000000e+00 13193.0
1 TraesCS4D01G047800 chr4D 86.354 491 29 16 3088 3546 432947862 432947378 1.120000e-137 501.0
2 TraesCS4D01G047800 chr4D 95.294 170 7 1 4354 4523 437295929 437295761 1.230000e-67 268.0
3 TraesCS4D01G047800 chr4D 100.000 81 0 0 1 81 23426955 23426875 4.660000e-32 150.0
4 TraesCS4D01G047800 chr4D 100.000 29 0 0 3911 3939 83279746 83279774 4.000000e-03 54.7
5 TraesCS4D01G047800 chr4B 95.078 3332 110 28 483 3785 35526723 35523417 0.000000e+00 5195.0
6 TraesCS4D01G047800 chr4B 95.997 3148 83 17 3769 6910 35523265 35520155 0.000000e+00 5075.0
7 TraesCS4D01G047800 chr4B 85.294 408 46 9 7013 7412 35516007 35515606 6.960000e-110 409.0
8 TraesCS4D01G047800 chr4B 91.892 74 6 0 393 466 35526783 35526710 3.680000e-18 104.0
9 TraesCS4D01G047800 chr4B 80.132 151 11 10 3086 3218 22848329 22848180 2.210000e-15 95.3
10 TraesCS4D01G047800 chr4A 95.492 2329 76 13 4518 6844 578537131 578539432 0.000000e+00 3692.0
11 TraesCS4D01G047800 chr4A 91.928 1437 66 19 2187 3585 578534747 578536171 0.000000e+00 1965.0
12 TraesCS4D01G047800 chr4A 90.008 1251 62 29 953 2168 578533553 578534775 0.000000e+00 1559.0
13 TraesCS4D01G047800 chr4A 93.231 458 24 6 492 945 578532710 578533164 0.000000e+00 667.0
14 TraesCS4D01G047800 chr4A 90.000 430 24 12 3618 4034 578536349 578536772 8.510000e-149 538.0
15 TraesCS4D01G047800 chr4A 85.063 395 27 19 7021 7415 578539749 578540111 2.540000e-99 374.0
16 TraesCS4D01G047800 chr4A 96.386 166 5 1 4358 4522 517406632 517406467 9.530000e-69 272.0
17 TraesCS4D01G047800 chr4A 82.463 268 9 11 4102 4359 578536893 578537132 4.560000e-47 200.0
18 TraesCS4D01G047800 chr4A 78.750 160 15 8 4070 4226 13761418 13761275 1.030000e-13 89.8
19 TraesCS4D01G047800 chr4A 89.831 59 3 2 4080 4138 13763961 13763906 1.040000e-08 73.1
20 TraesCS4D01G047800 chr4A 90.566 53 5 0 4035 4087 578536855 578536907 3.730000e-08 71.3
21 TraesCS4D01G047800 chr4A 97.500 40 1 0 3586 3625 578536295 578536334 1.340000e-07 69.4
22 TraesCS4D01G047800 chr7D 82.958 1332 168 31 1082 2374 528582425 528581114 0.000000e+00 1147.0
23 TraesCS4D01G047800 chr7D 83.936 249 10 7 4038 4275 153585077 153584848 2.110000e-50 211.0
24 TraesCS4D01G047800 chr7D 86.111 108 4 4 4168 4265 628721689 628721583 1.020000e-18 106.0
25 TraesCS4D01G047800 chr7D 88.889 72 7 1 4201 4271 387921669 387921740 3.700000e-13 87.9
26 TraesCS4D01G047800 chr6B 87.579 475 32 12 3091 3545 265975440 265975907 6.630000e-145 525.0
27 TraesCS4D01G047800 chr6B 86.869 297 19 9 3262 3545 265923299 265923588 1.560000e-81 315.0
28 TraesCS4D01G047800 chr3D 88.209 441 32 7 3120 3546 110402044 110401610 6.670000e-140 508.0
29 TraesCS4D01G047800 chr3D 96.319 163 6 0 4357 4519 537154701 537154863 1.230000e-67 268.0
30 TraesCS4D01G047800 chr3D 79.474 190 17 13 4087 4271 338316266 338316438 1.700000e-21 115.0
31 TraesCS4D01G047800 chr3D 75.829 211 17 20 3586 3762 110401423 110401213 8.020000e-10 76.8
32 TraesCS4D01G047800 chr3B 88.706 425 27 8 3125 3538 752672328 752672742 4.020000e-137 499.0
33 TraesCS4D01G047800 chr3B 85.447 481 45 12 3091 3546 103402005 103401525 1.880000e-130 477.0
34 TraesCS4D01G047800 chr3B 82.253 293 26 11 3084 3355 771134550 771134837 5.820000e-56 230.0
35 TraesCS4D01G047800 chr3B 80.745 322 22 17 3086 3375 52798776 52799089 1.630000e-51 215.0
36 TraesCS4D01G047800 chr6D 86.151 491 30 16 3087 3546 59625180 59625663 5.190000e-136 496.0
37 TraesCS4D01G047800 chr6D 77.251 211 14 18 3586 3762 59625851 59626061 7.960000e-15 93.5
38 TraesCS4D01G047800 chr6D 86.667 75 6 4 4199 4271 271006434 271006506 6.200000e-11 80.5
39 TraesCS4D01G047800 chr6A 86.279 481 32 12 3091 3543 55703472 55703946 6.720000e-135 492.0
40 TraesCS4D01G047800 chr6A 89.189 74 8 0 3689 3762 55704262 55704335 7.960000e-15 93.5
41 TraesCS4D01G047800 chr3A 85.887 496 27 15 3091 3543 700946313 700946808 8.690000e-134 488.0
42 TraesCS4D01G047800 chr1B 85.306 490 35 19 3083 3546 573873641 573873163 8.750000e-129 472.0
43 TraesCS4D01G047800 chr1B 97.059 34 1 0 3910 3943 451737909 451737876 2.900000e-04 58.4
44 TraesCS4D01G047800 chr1B 96.875 32 0 1 3911 3941 83972142 83972173 1.400000e-02 52.8
45 TraesCS4D01G047800 chr7B 89.037 374 27 7 3091 3451 8524587 8524215 1.140000e-122 451.0
46 TraesCS4D01G047800 chr7B 95.783 166 6 1 4358 4523 11441143 11441307 4.430000e-67 267.0
47 TraesCS4D01G047800 chr7B 90.780 141 2 5 4146 4275 115385013 115384873 2.140000e-40 178.0
48 TraesCS4D01G047800 chr7B 79.512 205 18 12 3586 3766 524724947 524725151 2.820000e-24 124.0
49 TraesCS4D01G047800 chr7B 100.000 29 0 0 3911 3939 473404421 473404449 4.000000e-03 54.7
50 TraesCS4D01G047800 chr1A 89.700 233 20 3 1098 1327 507745505 507745736 2.030000e-75 294.0
51 TraesCS4D01G047800 chr1A 86.404 228 24 5 1106 1327 585366456 585366682 7.470000e-60 243.0
52 TraesCS4D01G047800 chr5A 88.000 250 24 5 1082 1327 76490548 76490301 2.630000e-74 291.0
53 TraesCS4D01G047800 chr5A 78.138 247 26 22 4034 4271 395055793 395056020 1.690000e-26 132.0
54 TraesCS4D01G047800 chr2D 96.407 167 5 1 4353 4519 362930973 362930808 2.650000e-69 274.0
55 TraesCS4D01G047800 chr2D 90.206 194 16 3 4330 4523 578600713 578600903 4.470000e-62 250.0
56 TraesCS4D01G047800 chr2D 95.455 44 2 0 4068 4111 609210333 609210376 3.730000e-08 71.3
57 TraesCS4D01G047800 chrUn 95.783 166 7 0 4358 4523 141680746 141680911 1.230000e-67 268.0
58 TraesCS4D01G047800 chr1D 96.319 163 6 0 4357 4519 463382067 463381905 1.230000e-67 268.0
59 TraesCS4D01G047800 chr2B 82.927 287 21 9 3076 3334 277305923 277306209 4.500000e-57 233.0
60 TraesCS4D01G047800 chr2B 79.814 322 30 16 3090 3396 40349466 40349165 1.270000e-47 202.0
61 TraesCS4D01G047800 chr2B 100.000 40 0 0 3586 3625 277308438 277308477 2.880000e-09 75.0
62 TraesCS4D01G047800 chr2A 80.887 293 23 14 3091 3355 26936927 26936640 4.560000e-47 200.0
63 TraesCS4D01G047800 chr2A 79.104 201 17 12 3586 3762 525609710 525609511 1.700000e-21 115.0
64 TraesCS4D01G047800 chr5B 80.000 200 27 11 4077 4271 347698863 347698672 1.300000e-27 135.0
65 TraesCS4D01G047800 chr5B 85.849 106 5 3 4176 4271 300394558 300394453 3.680000e-18 104.0
66 TraesCS4D01G047800 chr5B 77.000 200 15 14 3586 3762 419843571 419843380 1.330000e-12 86.1
67 TraesCS4D01G047800 chr5B 92.857 56 4 0 4189 4244 456202648 456202703 1.720000e-11 82.4
68 TraesCS4D01G047800 chr5B 100.000 31 0 0 3913 3943 67320831 67320801 2.900000e-04 58.4
69 TraesCS4D01G047800 chr7A 87.379 103 2 2 4162 4254 155302805 155302704 2.840000e-19 108.0
70 TraesCS4D01G047800 chr5D 87.129 101 3 1 4181 4271 82952655 82952755 1.020000e-18 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G047800 chr4D 23419502 23426955 7453 True 6671.500000 13193 100.000000 1 7454 2 chr4D.!!$R3 7453
1 TraesCS4D01G047800 chr4B 35520155 35526783 6628 True 3458.000000 5195 94.322333 393 6910 3 chr4B.!!$R3 6517
2 TraesCS4D01G047800 chr4A 578532710 578540111 7401 False 1015.077778 3692 90.694556 492 7415 9 chr4A.!!$F1 6923
3 TraesCS4D01G047800 chr7D 528581114 528582425 1311 True 1147.000000 1147 82.958000 1082 2374 1 chr7D.!!$R2 1292
4 TraesCS4D01G047800 chr3D 110401213 110402044 831 True 292.400000 508 82.019000 3120 3762 2 chr3D.!!$R1 642
5 TraesCS4D01G047800 chr6D 59625180 59626061 881 False 294.750000 496 81.701000 3087 3762 2 chr6D.!!$F2 675
6 TraesCS4D01G047800 chr6A 55703472 55704335 863 False 292.750000 492 87.734000 3091 3762 2 chr6A.!!$F1 671

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
374 375 0.032403 GCCAGCACAGACATTTGCAA 59.968 50.000 0.00 0.00 41.48 4.08 F
487 488 0.318762 TTATTTTGCGGGGGTGTTGC 59.681 50.000 0.00 0.00 0.00 4.17 F
488 489 0.540830 TATTTTGCGGGGGTGTTGCT 60.541 50.000 0.00 0.00 0.00 3.91 F
634 636 1.212616 CTCTCACGAAATCCATCGCC 58.787 55.000 0.00 0.00 46.51 5.54 F
799 802 1.301623 CTTTCCACCCCCGCACATA 59.698 57.895 0.00 0.00 0.00 2.29 F
1478 1889 1.351707 GTGTTATGTGCATCGGCCG 59.648 57.895 22.12 22.12 40.13 6.13 F
3128 3586 1.046204 GGACGGAAAGACGGGGATAT 58.954 55.000 0.00 0.00 38.39 1.63 F
3173 3632 2.022129 CATTCGGGATACGGCGAGC 61.022 63.158 16.62 0.00 44.45 5.03 F
3720 4425 2.048222 CGTATCCCGCCGCATCAT 60.048 61.111 0.00 0.00 0.00 2.45 F
4726 5707 2.951642 TGGTTTGAAGAGGCAAAGACTG 59.048 45.455 0.00 0.00 38.33 3.51 F
5986 6972 0.808847 GGGAGCCGACGATGTAAACC 60.809 60.000 0.00 0.00 0.00 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1478 1889 0.174389 TGAGCTGAACGGATCTGAGC 59.826 55.000 9.00 7.09 0.00 4.26 R
1797 2208 0.545071 TGGACTGATCCTGCAGGTCA 60.545 55.000 31.58 28.39 46.43 4.02 R
1940 2351 1.138859 ACCAAGAAGCACCAAAAAGGC 59.861 47.619 0.00 0.00 43.14 4.35 R
2557 3001 0.668706 CAGGACCTCTGCTGTCAACG 60.669 60.000 0.00 0.00 36.60 4.10 R
2709 3153 0.034477 ATGGCTTCTGGGGGTTTACG 60.034 55.000 0.00 0.00 0.00 3.18 R
3413 3893 1.154016 CTGCTCATGCTTGTGCTGC 60.154 57.895 22.26 12.74 41.73 5.25 R
4726 5707 2.159142 ACCACGAATCATAGGGTCGTTC 60.159 50.000 4.63 0.00 45.17 3.95 R
5127 6108 2.859806 GCAGTTGCACATCCAAGAACAC 60.860 50.000 0.00 0.00 41.59 3.32 R
5373 6359 1.814394 TGGTTCACTGCTACGATACGT 59.186 47.619 0.00 0.00 44.35 3.57 R
6015 7001 0.970427 CATGGTGCCCCTGGTAAACC 60.970 60.000 0.00 0.00 0.00 3.27 R
6919 7910 0.036105 TGCAATGGTCTCACGCTCAT 60.036 50.000 0.00 0.00 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 5.646577 TGTAGAACTCTAGAAAGTCCAGC 57.353 43.478 0.00 0.00 0.00 4.85
42 43 5.326069 TGTAGAACTCTAGAAAGTCCAGCT 58.674 41.667 0.00 0.00 0.00 4.24
43 44 6.482524 TGTAGAACTCTAGAAAGTCCAGCTA 58.517 40.000 0.00 0.00 0.00 3.32
44 45 6.600032 TGTAGAACTCTAGAAAGTCCAGCTAG 59.400 42.308 0.00 0.00 34.37 3.42
45 46 5.822204 AGAACTCTAGAAAGTCCAGCTAGA 58.178 41.667 0.00 0.00 38.53 2.43
46 47 6.249951 AGAACTCTAGAAAGTCCAGCTAGAA 58.750 40.000 0.00 0.00 39.85 2.10
47 48 6.722129 AGAACTCTAGAAAGTCCAGCTAGAAA 59.278 38.462 0.00 0.00 39.85 2.52
48 49 6.275494 ACTCTAGAAAGTCCAGCTAGAAAC 57.725 41.667 0.00 0.00 39.85 2.78
49 50 5.186215 ACTCTAGAAAGTCCAGCTAGAAACC 59.814 44.000 0.00 0.00 39.85 3.27
50 51 5.084519 TCTAGAAAGTCCAGCTAGAAACCA 58.915 41.667 0.00 0.00 38.07 3.67
51 52 4.706842 AGAAAGTCCAGCTAGAAACCAA 57.293 40.909 0.00 0.00 0.00 3.67
52 53 4.646572 AGAAAGTCCAGCTAGAAACCAAG 58.353 43.478 0.00 0.00 0.00 3.61
53 54 4.103311 AGAAAGTCCAGCTAGAAACCAAGT 59.897 41.667 0.00 0.00 0.00 3.16
54 55 4.439253 AAGTCCAGCTAGAAACCAAGTT 57.561 40.909 0.00 0.00 0.00 2.66
55 56 4.439253 AGTCCAGCTAGAAACCAAGTTT 57.561 40.909 0.00 0.00 38.54 2.66
56 57 4.793201 AGTCCAGCTAGAAACCAAGTTTT 58.207 39.130 0.00 0.00 35.77 2.43
57 58 4.822350 AGTCCAGCTAGAAACCAAGTTTTC 59.178 41.667 0.00 0.00 35.77 2.29
58 59 4.023107 GTCCAGCTAGAAACCAAGTTTTCC 60.023 45.833 0.00 0.00 35.77 3.13
59 60 4.141251 TCCAGCTAGAAACCAAGTTTTCCT 60.141 41.667 0.00 0.00 35.77 3.36
60 61 4.216472 CCAGCTAGAAACCAAGTTTTCCTC 59.784 45.833 0.00 0.00 35.77 3.71
61 62 5.066593 CAGCTAGAAACCAAGTTTTCCTCT 58.933 41.667 0.00 0.00 35.77 3.69
62 63 5.180304 CAGCTAGAAACCAAGTTTTCCTCTC 59.820 44.000 0.00 0.00 35.77 3.20
63 64 5.063880 GCTAGAAACCAAGTTTTCCTCTCA 58.936 41.667 0.00 0.00 35.77 3.27
64 65 5.180304 GCTAGAAACCAAGTTTTCCTCTCAG 59.820 44.000 0.00 0.00 35.77 3.35
65 66 5.373812 AGAAACCAAGTTTTCCTCTCAGA 57.626 39.130 0.00 0.00 35.77 3.27
66 67 5.946486 AGAAACCAAGTTTTCCTCTCAGAT 58.054 37.500 0.00 0.00 35.77 2.90
67 68 6.368805 AGAAACCAAGTTTTCCTCTCAGATT 58.631 36.000 0.00 0.00 35.77 2.40
68 69 6.264067 AGAAACCAAGTTTTCCTCTCAGATTG 59.736 38.462 0.00 0.00 35.77 2.67
69 70 5.053978 ACCAAGTTTTCCTCTCAGATTGT 57.946 39.130 0.00 0.00 0.00 2.71
70 71 4.823989 ACCAAGTTTTCCTCTCAGATTGTG 59.176 41.667 0.00 0.00 0.00 3.33
71 72 4.320788 CCAAGTTTTCCTCTCAGATTGTGC 60.321 45.833 0.00 0.00 0.00 4.57
72 73 4.090761 AGTTTTCCTCTCAGATTGTGCA 57.909 40.909 0.00 0.00 0.00 4.57
73 74 4.660168 AGTTTTCCTCTCAGATTGTGCAT 58.340 39.130 0.00 0.00 0.00 3.96
74 75 4.699257 AGTTTTCCTCTCAGATTGTGCATC 59.301 41.667 0.00 0.00 0.00 3.91
75 76 3.986996 TTCCTCTCAGATTGTGCATCA 57.013 42.857 0.00 0.00 33.75 3.07
76 77 3.257469 TCCTCTCAGATTGTGCATCAC 57.743 47.619 0.00 0.00 33.75 3.06
77 78 2.093288 TCCTCTCAGATTGTGCATCACC 60.093 50.000 0.00 0.00 33.75 4.02
78 79 2.355412 CCTCTCAGATTGTGCATCACCA 60.355 50.000 0.00 0.00 33.75 4.17
79 80 3.542648 CTCTCAGATTGTGCATCACCAT 58.457 45.455 0.00 0.00 33.75 3.55
80 81 4.443881 CCTCTCAGATTGTGCATCACCATA 60.444 45.833 0.00 0.00 33.75 2.74
327 328 3.460868 CCCATCAAAAGGCCCCGC 61.461 66.667 0.00 0.00 0.00 6.13
328 329 2.679642 CCATCAAAAGGCCCCGCA 60.680 61.111 0.00 0.00 0.00 5.69
329 330 2.282039 CCATCAAAAGGCCCCGCAA 61.282 57.895 0.00 0.00 0.00 4.85
330 331 1.216178 CATCAAAAGGCCCCGCAAG 59.784 57.895 0.00 0.00 0.00 4.01
331 332 1.228862 ATCAAAAGGCCCCGCAAGT 60.229 52.632 0.00 0.00 0.00 3.16
332 333 0.039035 ATCAAAAGGCCCCGCAAGTA 59.961 50.000 0.00 0.00 0.00 2.24
333 334 0.891904 TCAAAAGGCCCCGCAAGTAC 60.892 55.000 0.00 0.00 0.00 2.73
334 335 1.151908 AAAAGGCCCCGCAAGTACA 59.848 52.632 0.00 0.00 0.00 2.90
335 336 0.468400 AAAAGGCCCCGCAAGTACAA 60.468 50.000 0.00 0.00 0.00 2.41
336 337 0.468400 AAAGGCCCCGCAAGTACAAA 60.468 50.000 0.00 0.00 0.00 2.83
337 338 0.468400 AAGGCCCCGCAAGTACAAAA 60.468 50.000 0.00 0.00 0.00 2.44
338 339 0.251608 AGGCCCCGCAAGTACAAAAT 60.252 50.000 0.00 0.00 0.00 1.82
339 340 0.108851 GGCCCCGCAAGTACAAAATG 60.109 55.000 0.00 0.00 0.00 2.32
340 341 0.735978 GCCCCGCAAGTACAAAATGC 60.736 55.000 0.00 0.00 36.74 3.56
341 342 0.108851 CCCCGCAAGTACAAAATGCC 60.109 55.000 0.00 0.00 36.75 4.40
342 343 0.600557 CCCGCAAGTACAAAATGCCA 59.399 50.000 0.00 0.00 36.75 4.92
343 344 1.000283 CCCGCAAGTACAAAATGCCAA 60.000 47.619 0.00 0.00 36.75 4.52
344 345 2.058057 CCGCAAGTACAAAATGCCAAC 58.942 47.619 0.00 0.00 36.75 3.77
345 346 1.713404 CGCAAGTACAAAATGCCAACG 59.287 47.619 0.00 0.00 36.75 4.10
346 347 2.058057 GCAAGTACAAAATGCCAACGG 58.942 47.619 0.00 0.00 34.03 4.44
347 348 2.287909 GCAAGTACAAAATGCCAACGGA 60.288 45.455 0.00 0.00 34.03 4.69
348 349 3.797184 GCAAGTACAAAATGCCAACGGAA 60.797 43.478 0.00 0.00 34.03 4.30
349 350 3.915437 AGTACAAAATGCCAACGGAAG 57.085 42.857 0.00 0.00 0.00 3.46
350 351 7.950450 GCAAGTACAAAATGCCAACGGAAGT 62.950 44.000 0.00 0.00 39.20 3.01
360 361 4.021925 ACGGAAGTCCCTGCCAGC 62.022 66.667 0.00 0.00 44.19 4.85
361 362 4.020617 CGGAAGTCCCTGCCAGCA 62.021 66.667 0.00 0.00 0.00 4.41
362 363 2.360475 GGAAGTCCCTGCCAGCAC 60.360 66.667 0.00 0.00 0.00 4.40
363 364 2.431683 GAAGTCCCTGCCAGCACA 59.568 61.111 0.00 0.00 0.00 4.57
364 365 1.673665 GAAGTCCCTGCCAGCACAG 60.674 63.158 0.00 0.00 37.42 3.66
365 366 2.116983 GAAGTCCCTGCCAGCACAGA 62.117 60.000 3.24 0.00 40.25 3.41
366 367 2.359230 GTCCCTGCCAGCACAGAC 60.359 66.667 3.24 2.51 40.25 3.51
367 368 2.848679 TCCCTGCCAGCACAGACA 60.849 61.111 3.24 0.00 40.25 3.41
368 369 2.226315 TCCCTGCCAGCACAGACAT 61.226 57.895 3.24 0.00 40.25 3.06
369 370 1.303888 CCCTGCCAGCACAGACATT 60.304 57.895 3.24 0.00 40.25 2.71
370 371 0.896940 CCCTGCCAGCACAGACATTT 60.897 55.000 3.24 0.00 40.25 2.32
371 372 0.242825 CCTGCCAGCACAGACATTTG 59.757 55.000 3.24 0.00 40.25 2.32
372 373 0.388134 CTGCCAGCACAGACATTTGC 60.388 55.000 0.00 0.00 40.25 3.68
373 374 1.108132 TGCCAGCACAGACATTTGCA 61.108 50.000 0.00 0.00 41.48 4.08
374 375 0.032403 GCCAGCACAGACATTTGCAA 59.968 50.000 0.00 0.00 41.48 4.08
375 376 1.538634 GCCAGCACAGACATTTGCAAA 60.539 47.619 15.44 15.44 41.48 3.68
376 377 2.868839 GCCAGCACAGACATTTGCAAAT 60.869 45.455 18.99 18.99 41.48 2.32
377 378 2.991190 CCAGCACAGACATTTGCAAATC 59.009 45.455 21.70 12.83 41.48 2.17
378 379 3.553302 CCAGCACAGACATTTGCAAATCA 60.553 43.478 21.70 0.00 41.48 2.57
379 380 4.242475 CAGCACAGACATTTGCAAATCAT 58.758 39.130 21.70 12.96 41.48 2.45
380 381 4.688879 CAGCACAGACATTTGCAAATCATT 59.311 37.500 21.70 9.24 41.48 2.57
381 382 5.178623 CAGCACAGACATTTGCAAATCATTT 59.821 36.000 21.70 6.74 41.48 2.32
382 383 5.407387 AGCACAGACATTTGCAAATCATTTC 59.593 36.000 21.70 14.63 41.48 2.17
383 384 5.407387 GCACAGACATTTGCAAATCATTTCT 59.593 36.000 21.70 16.40 38.68 2.52
384 385 6.587226 GCACAGACATTTGCAAATCATTTCTA 59.413 34.615 21.70 0.00 38.68 2.10
385 386 7.201410 GCACAGACATTTGCAAATCATTTCTAG 60.201 37.037 21.70 15.20 38.68 2.43
386 387 8.024865 CACAGACATTTGCAAATCATTTCTAGA 58.975 33.333 21.70 0.00 0.00 2.43
387 388 8.579006 ACAGACATTTGCAAATCATTTCTAGAA 58.421 29.630 21.70 0.00 0.00 2.10
388 389 9.414295 CAGACATTTGCAAATCATTTCTAGAAA 57.586 29.630 21.70 19.83 34.46 2.52
389 390 9.985730 AGACATTTGCAAATCATTTCTAGAAAA 57.014 25.926 21.70 7.02 33.56 2.29
460 461 9.135843 TGTCTTAACGTCTATATCTGTTGTTTG 57.864 33.333 0.00 0.00 0.00 2.93
461 462 9.350357 GTCTTAACGTCTATATCTGTTGTTTGA 57.650 33.333 0.00 0.00 0.00 2.69
462 463 9.569167 TCTTAACGTCTATATCTGTTGTTTGAG 57.431 33.333 0.00 0.00 0.00 3.02
463 464 8.697846 TTAACGTCTATATCTGTTGTTTGAGG 57.302 34.615 0.00 0.00 0.00 3.86
464 465 6.525578 ACGTCTATATCTGTTGTTTGAGGA 57.474 37.500 0.00 0.00 0.00 3.71
465 466 6.331061 ACGTCTATATCTGTTGTTTGAGGAC 58.669 40.000 0.00 0.00 0.00 3.85
466 467 6.153000 ACGTCTATATCTGTTGTTTGAGGACT 59.847 38.462 0.00 0.00 0.00 3.85
467 468 7.036220 CGTCTATATCTGTTGTTTGAGGACTT 58.964 38.462 0.00 0.00 0.00 3.01
468 469 7.545965 CGTCTATATCTGTTGTTTGAGGACTTT 59.454 37.037 0.00 0.00 0.00 2.66
469 470 9.220767 GTCTATATCTGTTGTTTGAGGACTTTT 57.779 33.333 0.00 0.00 0.00 2.27
475 476 8.925161 TCTGTTGTTTGAGGACTTTTATTTTG 57.075 30.769 0.00 0.00 0.00 2.44
476 477 7.491048 TCTGTTGTTTGAGGACTTTTATTTTGC 59.509 33.333 0.00 0.00 0.00 3.68
477 478 6.254589 TGTTGTTTGAGGACTTTTATTTTGCG 59.745 34.615 0.00 0.00 0.00 4.85
478 479 5.285651 TGTTTGAGGACTTTTATTTTGCGG 58.714 37.500 0.00 0.00 0.00 5.69
479 480 4.513198 TTGAGGACTTTTATTTTGCGGG 57.487 40.909 0.00 0.00 0.00 6.13
480 481 2.823154 TGAGGACTTTTATTTTGCGGGG 59.177 45.455 0.00 0.00 0.00 5.73
481 482 2.165641 GAGGACTTTTATTTTGCGGGGG 59.834 50.000 0.00 0.00 0.00 5.40
482 483 1.897133 GGACTTTTATTTTGCGGGGGT 59.103 47.619 0.00 0.00 0.00 4.95
483 484 2.353307 GGACTTTTATTTTGCGGGGGTG 60.353 50.000 0.00 0.00 0.00 4.61
484 485 2.297880 GACTTTTATTTTGCGGGGGTGT 59.702 45.455 0.00 0.00 0.00 4.16
485 486 2.701423 ACTTTTATTTTGCGGGGGTGTT 59.299 40.909 0.00 0.00 0.00 3.32
486 487 2.821991 TTTATTTTGCGGGGGTGTTG 57.178 45.000 0.00 0.00 0.00 3.33
487 488 0.318762 TTATTTTGCGGGGGTGTTGC 59.681 50.000 0.00 0.00 0.00 4.17
488 489 0.540830 TATTTTGCGGGGGTGTTGCT 60.541 50.000 0.00 0.00 0.00 3.91
489 490 1.406860 ATTTTGCGGGGGTGTTGCTT 61.407 50.000 0.00 0.00 0.00 3.91
490 491 2.022240 TTTTGCGGGGGTGTTGCTTC 62.022 55.000 0.00 0.00 0.00 3.86
491 492 3.723097 TTGCGGGGGTGTTGCTTCA 62.723 57.895 0.00 0.00 0.00 3.02
513 514 2.545742 GGACAACCAAGGCACAAACATC 60.546 50.000 0.00 0.00 35.97 3.06
530 531 6.377146 ACAAACATCCAACTAGTTCTTGTTGT 59.623 34.615 19.96 15.39 41.16 3.32
634 636 1.212616 CTCTCACGAAATCCATCGCC 58.787 55.000 0.00 0.00 46.51 5.54
636 638 2.028876 TCTCACGAAATCCATCGCCTA 58.971 47.619 0.00 0.00 46.51 3.93
798 801 2.035626 CTTTCCACCCCCGCACAT 59.964 61.111 0.00 0.00 0.00 3.21
799 802 1.301623 CTTTCCACCCCCGCACATA 59.698 57.895 0.00 0.00 0.00 2.29
801 804 1.493854 TTTCCACCCCCGCACATACT 61.494 55.000 0.00 0.00 0.00 2.12
802 805 1.493854 TTCCACCCCCGCACATACTT 61.494 55.000 0.00 0.00 0.00 2.24
804 807 1.451387 CACCCCCGCACATACTTCC 60.451 63.158 0.00 0.00 0.00 3.46
1478 1889 1.351707 GTGTTATGTGCATCGGCCG 59.648 57.895 22.12 22.12 40.13 6.13
1502 1913 3.954258 TCAGATCCGTTCAGCTCATAGAA 59.046 43.478 0.00 0.00 0.00 2.10
1505 1916 5.006165 CAGATCCGTTCAGCTCATAGAAAAC 59.994 44.000 0.00 0.00 0.00 2.43
1543 1954 6.308710 TCTCACGTACATTTCGTTTAATCG 57.691 37.500 0.00 0.00 39.55 3.34
1569 1980 9.747293 GGTAATGGTTGTAGAGACTAGAAATAC 57.253 37.037 0.00 0.00 0.00 1.89
1631 2042 5.061064 GTCAAGCGTGTGTGATTTCTAGTAG 59.939 44.000 0.00 0.00 0.00 2.57
1632 2043 4.785511 AGCGTGTGTGATTTCTAGTAGT 57.214 40.909 0.00 0.00 0.00 2.73
1634 2045 5.638783 AGCGTGTGTGATTTCTAGTAGTAC 58.361 41.667 0.00 0.00 0.00 2.73
1635 2046 4.494764 GCGTGTGTGATTTCTAGTAGTACG 59.505 45.833 0.00 0.00 0.00 3.67
1636 2047 5.026462 CGTGTGTGATTTCTAGTAGTACGG 58.974 45.833 0.00 0.00 0.00 4.02
1710 2121 6.147164 TGAAGATTAAGACGAACACACCAATC 59.853 38.462 0.00 0.00 0.00 2.67
1797 2208 1.990060 CGATCAGGGTGGGGAGTGT 60.990 63.158 0.00 0.00 0.00 3.55
1803 2214 2.750350 GGTGGGGAGTGTGACCTG 59.250 66.667 0.00 0.00 0.00 4.00
1887 2298 2.043664 TGTGGATAAGAATTTGGGCCCA 59.956 45.455 24.45 24.45 0.00 5.36
1940 2351 3.552699 CAGTGCACAAGGTGATGTTTTTG 59.447 43.478 21.04 0.00 35.23 2.44
1941 2352 2.284952 GTGCACAAGGTGATGTTTTTGC 59.715 45.455 13.17 0.00 35.23 3.68
1942 2353 1.866601 GCACAAGGTGATGTTTTTGCC 59.133 47.619 0.00 0.00 35.23 4.52
1943 2354 2.483538 GCACAAGGTGATGTTTTTGCCT 60.484 45.455 0.00 0.00 35.23 4.75
1944 2355 3.795877 CACAAGGTGATGTTTTTGCCTT 58.204 40.909 0.00 0.00 39.86 4.35
1945 2356 4.190772 CACAAGGTGATGTTTTTGCCTTT 58.809 39.130 0.00 0.00 37.44 3.11
1946 2357 4.635324 CACAAGGTGATGTTTTTGCCTTTT 59.365 37.500 0.00 0.00 37.44 2.27
1947 2358 5.123661 CACAAGGTGATGTTTTTGCCTTTTT 59.876 36.000 0.00 0.00 37.44 1.94
2011 2432 4.955811 AGTCATGCATATCCGGTTTCTA 57.044 40.909 0.00 0.00 0.00 2.10
2032 2453 9.555727 TTTCTATATGTTTCCACTAATGTAGGC 57.444 33.333 0.00 0.00 0.00 3.93
2060 2482 7.534085 TCATATTTCTAGCGTTGTTAGGTTG 57.466 36.000 0.00 0.00 0.00 3.77
2085 2522 6.834107 AGAGCTTTAAGGTTAACAACTGGTA 58.166 36.000 8.10 0.00 0.00 3.25
2494 2938 4.091453 GCCATTTGCGTTTAAAGCTAGA 57.909 40.909 4.39 0.00 35.28 2.43
2557 3001 1.935933 CAGTAGGGTCCAACATACGC 58.064 55.000 0.00 0.00 0.00 4.42
2631 3075 6.287525 AGGTATGCTTATTCTCTGCTTCTTC 58.712 40.000 0.00 0.00 0.00 2.87
2635 3079 5.344066 TGCTTATTCTCTGCTTCTTCGTAG 58.656 41.667 0.00 0.00 0.00 3.51
2814 3258 1.192428 CACCCTCCTACCTTAAGCGT 58.808 55.000 0.00 0.00 0.00 5.07
2992 3436 9.015577 TCGAAAGATTGTTCAATGTTGTTAAAC 57.984 29.630 8.31 0.00 33.82 2.01
3128 3586 1.046204 GGACGGAAAGACGGGGATAT 58.954 55.000 0.00 0.00 38.39 1.63
3173 3632 2.022129 CATTCGGGATACGGCGAGC 61.022 63.158 16.62 0.00 44.45 5.03
3394 3874 7.684529 AGAAGACAAGACATAATTGGAAGACT 58.315 34.615 0.00 0.00 31.76 3.24
3720 4425 2.048222 CGTATCCCGCCGCATCAT 60.048 61.111 0.00 0.00 0.00 2.45
4274 5255 3.653113 CGTCGACTCGAAAACATTGTTTG 59.347 43.478 15.17 5.78 37.72 2.93
4378 5359 6.082707 ACATACTCCCTCGGTTCCTAAATAT 58.917 40.000 0.00 0.00 0.00 1.28
4403 5384 9.804758 ATAAGTCTTTTTAGAGATTCCACTACG 57.195 33.333 0.00 0.00 0.00 3.51
4413 5394 7.261829 AGAGATTCCACTACGAACTACATAC 57.738 40.000 0.00 0.00 0.00 2.39
4496 5477 7.400339 TCCATAGTGGAATCTCTAAACAGACTT 59.600 37.037 0.00 0.00 45.00 3.01
4497 5478 8.696374 CCATAGTGGAATCTCTAAACAGACTTA 58.304 37.037 0.00 0.00 40.96 2.24
4641 5622 6.469782 AAATGAATACCCGATTGAGCATTT 57.530 33.333 0.00 0.00 30.37 2.32
4642 5623 6.469782 AATGAATACCCGATTGAGCATTTT 57.530 33.333 0.00 0.00 0.00 1.82
4726 5707 2.951642 TGGTTTGAAGAGGCAAAGACTG 59.048 45.455 0.00 0.00 38.33 3.51
4964 5945 3.006217 TCCACCAGCAGATATTCGATCAG 59.994 47.826 0.00 0.00 0.00 2.90
5104 6085 9.277783 CCTTATCTAACAATATGCTTAGCTTGT 57.722 33.333 5.60 5.12 33.45 3.16
5111 6092 7.921786 ACAATATGCTTAGCTTGTTGTTCTA 57.078 32.000 22.45 0.00 42.04 2.10
5210 6191 7.639378 TGCTAGAGTTTATAAAAATGACCCCT 58.361 34.615 0.00 0.00 0.00 4.79
5263 6244 6.902341 ACATAACATGTTGAGCACAAAGTAG 58.098 36.000 21.42 0.00 41.63 2.57
5373 6359 6.385649 AGAATTGCGGTTACTTTCTTCAAA 57.614 33.333 0.00 0.00 0.00 2.69
5394 6380 2.426024 ACGTATCGTAGCAGTGAACCAT 59.574 45.455 0.00 0.00 38.73 3.55
5458 6444 4.993705 ACTTGTGAGACCAAGGGAATTA 57.006 40.909 5.96 0.00 44.89 1.40
5483 6469 6.653020 AGATGTGCTGTTTGTCCTTCATATA 58.347 36.000 0.00 0.00 0.00 0.86
5809 6795 1.233019 CCAAGGTGCTGTGTTCTCAG 58.767 55.000 0.00 0.00 38.35 3.35
5844 6830 3.554934 AGCCAAGAAGTTCAATGTGACA 58.445 40.909 5.50 0.00 0.00 3.58
5937 6923 1.207329 GTTGCTAATCCCACCGAGAGT 59.793 52.381 0.00 0.00 0.00 3.24
5986 6972 0.808847 GGGAGCCGACGATGTAAACC 60.809 60.000 0.00 0.00 0.00 3.27
6015 7001 0.527113 TTCCAGCGGATGCATTTGTG 59.473 50.000 0.00 0.00 46.23 3.33
6300 7286 2.750637 GTCGACGAGAGGGAGCCA 60.751 66.667 0.00 0.00 0.00 4.75
6442 7431 2.516930 AGTGCAGCGCAACCTTGT 60.517 55.556 11.47 0.00 41.47 3.16
6443 7432 2.120909 AGTGCAGCGCAACCTTGTT 61.121 52.632 11.47 0.00 41.47 2.83
6444 7433 1.945662 GTGCAGCGCAACCTTGTTG 60.946 57.895 11.47 2.65 41.47 3.33
6455 7444 3.627577 GCAACCTTGTTGAAGAAGTGAGA 59.372 43.478 10.94 0.00 0.00 3.27
6460 7449 3.475566 TGTTGAAGAAGTGAGACCCTG 57.524 47.619 0.00 0.00 0.00 4.45
6472 7462 2.299521 GAGACCCTGCTCTATGTACGT 58.700 52.381 0.00 0.00 32.16 3.57
6536 7527 3.318839 TGCTTTTCCATTTCACTCACCAG 59.681 43.478 0.00 0.00 0.00 4.00
6537 7528 3.319122 GCTTTTCCATTTCACTCACCAGT 59.681 43.478 0.00 0.00 0.00 4.00
6538 7529 4.202151 GCTTTTCCATTTCACTCACCAGTT 60.202 41.667 0.00 0.00 0.00 3.16
6723 7714 8.014517 CCGCAAGCAAATAATTTTGTTGTATTT 58.985 29.630 0.97 0.00 43.43 1.40
6847 7838 1.075374 TGGCACATAGCTTTGGACCTT 59.925 47.619 15.32 0.00 44.79 3.50
6854 7845 0.610687 AGCTTTGGACCTTCCTCTCG 59.389 55.000 0.00 0.00 37.46 4.04
6872 7863 6.017934 TCCTCTCGTTGTTCTTTCTTTGAATG 60.018 38.462 0.00 0.00 0.00 2.67
6879 7870 8.690840 CGTTGTTCTTTCTTTGAATGGTTTATC 58.309 33.333 0.00 0.00 0.00 1.75
6880 7871 8.978539 GTTGTTCTTTCTTTGAATGGTTTATCC 58.021 33.333 0.00 0.00 0.00 2.59
6886 7877 4.338118 TCTTTGAATGGTTTATCCGGATGC 59.662 41.667 27.55 15.86 39.52 3.91
6888 7879 3.476552 TGAATGGTTTATCCGGATGCTC 58.523 45.455 27.55 15.27 39.52 4.26
6891 7882 1.837439 TGGTTTATCCGGATGCTCTGT 59.163 47.619 27.55 1.29 39.52 3.41
6894 7885 3.531538 GTTTATCCGGATGCTCTGTCAA 58.468 45.455 27.55 7.58 0.00 3.18
6895 7886 4.130118 GTTTATCCGGATGCTCTGTCAAT 58.870 43.478 27.55 0.00 0.00 2.57
6897 7888 0.462581 TCCGGATGCTCTGTCAATGC 60.463 55.000 0.00 0.00 0.00 3.56
6898 7889 0.463295 CCGGATGCTCTGTCAATGCT 60.463 55.000 0.00 0.00 0.00 3.79
6899 7890 0.656259 CGGATGCTCTGTCAATGCTG 59.344 55.000 0.00 0.00 0.00 4.41
6900 7891 0.381089 GGATGCTCTGTCAATGCTGC 59.619 55.000 0.00 0.00 0.00 5.25
6901 7892 1.092348 GATGCTCTGTCAATGCTGCA 58.908 50.000 4.13 4.13 34.88 4.41
6902 7893 1.676529 GATGCTCTGTCAATGCTGCAT 59.323 47.619 9.81 9.81 42.74 3.96
6903 7894 0.808755 TGCTCTGTCAATGCTGCATG 59.191 50.000 17.00 10.44 0.00 4.06
6904 7895 0.525668 GCTCTGTCAATGCTGCATGC 60.526 55.000 17.00 11.82 43.25 4.06
6906 7897 1.472878 CTCTGTCAATGCTGCATGCTT 59.527 47.619 20.33 1.02 43.37 3.91
6908 7899 0.963225 TGTCAATGCTGCATGCTTGT 59.037 45.000 20.33 0.00 43.37 3.16
6909 7900 1.336424 TGTCAATGCTGCATGCTTGTG 60.336 47.619 20.33 10.29 43.37 3.33
6910 7901 0.389296 TCAATGCTGCATGCTTGTGC 60.389 50.000 20.33 17.08 45.25 4.57
6911 7902 0.389817 CAATGCTGCATGCTTGTGCT 60.390 50.000 20.33 0.00 45.27 4.40
6912 7903 0.389817 AATGCTGCATGCTTGTGCTG 60.390 50.000 20.33 13.28 45.27 4.41
6913 7904 2.126071 GCTGCATGCTTGTGCTGG 60.126 61.111 20.33 0.36 45.27 4.85
6914 7905 2.126071 CTGCATGCTTGTGCTGGC 60.126 61.111 20.33 0.00 45.27 4.85
6915 7906 2.913060 TGCATGCTTGTGCTGGCA 60.913 55.556 20.33 0.00 45.27 4.92
6916 7907 2.340809 GCATGCTTGTGCTGGCAA 59.659 55.556 11.37 0.00 41.90 4.52
6917 7908 1.301087 GCATGCTTGTGCTGGCAAA 60.301 52.632 11.37 0.00 41.90 3.68
6918 7909 1.289109 GCATGCTTGTGCTGGCAAAG 61.289 55.000 11.37 5.25 41.90 2.77
6919 7910 0.315886 CATGCTTGTGCTGGCAAAGA 59.684 50.000 15.86 6.78 41.90 2.52
6920 7911 1.067142 CATGCTTGTGCTGGCAAAGAT 60.067 47.619 15.86 8.05 41.90 2.40
6921 7912 0.315886 TGCTTGTGCTGGCAAAGATG 59.684 50.000 15.86 1.90 40.48 2.90
6922 7913 0.599558 GCTTGTGCTGGCAAAGATGA 59.400 50.000 15.86 0.00 36.03 2.92
6923 7914 1.402456 GCTTGTGCTGGCAAAGATGAG 60.402 52.381 15.86 1.47 36.03 2.90
6924 7915 0.599558 TTGTGCTGGCAAAGATGAGC 59.400 50.000 0.00 0.00 0.00 4.26
6927 7918 1.136147 GCTGGCAAAGATGAGCGTG 59.864 57.895 0.00 0.00 0.00 5.34
6928 7919 1.300971 GCTGGCAAAGATGAGCGTGA 61.301 55.000 0.00 0.00 0.00 4.35
6930 7921 0.321346 TGGCAAAGATGAGCGTGAGA 59.679 50.000 0.00 0.00 0.00 3.27
6931 7922 0.723981 GGCAAAGATGAGCGTGAGAC 59.276 55.000 0.00 0.00 0.00 3.36
6933 7924 1.941209 GCAAAGATGAGCGTGAGACCA 60.941 52.381 0.00 0.00 0.00 4.02
6934 7925 2.625737 CAAAGATGAGCGTGAGACCAT 58.374 47.619 0.00 0.00 0.00 3.55
6935 7926 3.005554 CAAAGATGAGCGTGAGACCATT 58.994 45.455 0.00 0.00 0.00 3.16
6936 7927 2.306341 AGATGAGCGTGAGACCATTG 57.694 50.000 0.00 0.00 0.00 2.82
6937 7928 0.654683 GATGAGCGTGAGACCATTGC 59.345 55.000 0.00 0.00 0.00 3.56
6940 7931 0.950555 GAGCGTGAGACCATTGCACA 60.951 55.000 0.00 0.00 32.96 4.57
6942 7933 0.523072 GCGTGAGACCATTGCACATT 59.477 50.000 0.00 0.00 32.96 2.71
6943 7934 1.730121 GCGTGAGACCATTGCACATTG 60.730 52.381 0.00 0.00 32.96 2.82
6944 7935 1.135603 CGTGAGACCATTGCACATTGG 60.136 52.381 9.47 9.47 37.73 3.16
6945 7936 0.889994 TGAGACCATTGCACATTGGC 59.110 50.000 10.69 5.15 35.76 4.52
6946 7937 0.889994 GAGACCATTGCACATTGGCA 59.110 50.000 10.69 0.00 43.19 4.92
6958 7949 6.483385 TGCACATTGGCAAATAATTTCTTG 57.517 33.333 3.01 0.00 41.65 3.02
6959 7950 5.996513 TGCACATTGGCAAATAATTTCTTGT 59.003 32.000 3.01 0.00 41.65 3.16
6960 7951 6.147492 TGCACATTGGCAAATAATTTCTTGTC 59.853 34.615 3.01 0.00 41.65 3.18
6961 7952 6.147492 GCACATTGGCAAATAATTTCTTGTCA 59.853 34.615 3.01 3.17 35.44 3.58
6962 7953 7.622672 GCACATTGGCAAATAATTTCTTGTCAG 60.623 37.037 3.01 0.00 38.32 3.51
6963 7954 6.875195 ACATTGGCAAATAATTTCTTGTCAGG 59.125 34.615 3.01 6.40 38.32 3.86
6966 7957 5.185635 TGGCAAATAATTTCTTGTCAGGGAG 59.814 40.000 3.17 0.00 32.42 4.30
6967 7958 5.418840 GGCAAATAATTTCTTGTCAGGGAGA 59.581 40.000 0.35 0.00 0.00 3.71
6969 7960 7.199078 GCAAATAATTTCTTGTCAGGGAGATC 58.801 38.462 0.00 0.00 0.00 2.75
6970 7961 7.682981 GCAAATAATTTCTTGTCAGGGAGATCC 60.683 40.741 0.00 0.00 0.00 3.36
6972 7963 5.527026 AATTTCTTGTCAGGGAGATCCTT 57.473 39.130 0.00 0.00 45.47 3.36
6973 7964 3.988976 TTCTTGTCAGGGAGATCCTTG 57.011 47.619 4.66 4.66 45.47 3.61
6974 7965 1.556911 TCTTGTCAGGGAGATCCTTGC 59.443 52.381 6.13 2.97 45.47 4.01
6975 7966 1.558756 CTTGTCAGGGAGATCCTTGCT 59.441 52.381 6.13 0.00 45.47 3.91
6976 7967 0.907486 TGTCAGGGAGATCCTTGCTG 59.093 55.000 6.13 2.22 45.47 4.41
6978 7969 0.907486 TCAGGGAGATCCTTGCTGTG 59.093 55.000 6.13 0.00 45.47 3.66
6979 7970 0.747283 CAGGGAGATCCTTGCTGTGC 60.747 60.000 0.00 0.00 45.47 4.57
6980 7971 0.913451 AGGGAGATCCTTGCTGTGCT 60.913 55.000 0.00 0.00 45.47 4.40
6982 7973 1.375098 GGAGATCCTTGCTGTGCTGC 61.375 60.000 0.00 0.00 0.00 5.25
6984 7975 0.907486 AGATCCTTGCTGTGCTGCTA 59.093 50.000 0.00 0.00 0.00 3.49
6986 7977 0.393537 ATCCTTGCTGTGCTGCTACC 60.394 55.000 0.00 0.00 0.00 3.18
6987 7978 2.042831 CCTTGCTGTGCTGCTACCC 61.043 63.158 0.00 0.00 0.00 3.69
6988 7979 1.002868 CTTGCTGTGCTGCTACCCT 60.003 57.895 0.00 0.00 0.00 4.34
6989 7980 0.607489 CTTGCTGTGCTGCTACCCTT 60.607 55.000 0.00 0.00 0.00 3.95
6990 7981 0.890542 TTGCTGTGCTGCTACCCTTG 60.891 55.000 0.00 0.00 0.00 3.61
6991 7982 2.694760 GCTGTGCTGCTACCCTTGC 61.695 63.158 0.00 0.00 0.00 4.01
6992 7983 2.358615 TGTGCTGCTACCCTTGCG 60.359 61.111 0.00 0.00 0.00 4.85
6993 7984 2.047274 GTGCTGCTACCCTTGCGA 60.047 61.111 0.00 0.00 0.00 5.10
6994 7985 2.103042 GTGCTGCTACCCTTGCGAG 61.103 63.158 0.00 0.00 0.00 5.03
6996 7987 1.254975 TGCTGCTACCCTTGCGAGTA 61.255 55.000 0.00 0.00 0.00 2.59
6998 7989 0.179108 CTGCTACCCTTGCGAGTACC 60.179 60.000 0.00 0.00 0.00 3.34
7001 7992 0.175073 CTACCCTTGCGAGTACCACC 59.825 60.000 0.00 0.00 0.00 4.61
7003 7994 1.373435 CCCTTGCGAGTACCACCAA 59.627 57.895 0.00 0.00 0.00 3.67
7004 7995 0.673644 CCCTTGCGAGTACCACCAAG 60.674 60.000 0.00 9.02 35.61 3.61
7005 7996 1.298859 CCTTGCGAGTACCACCAAGC 61.299 60.000 0.00 0.02 34.76 4.01
7007 7998 0.179043 TTGCGAGTACCACCAAGCAA 60.179 50.000 0.00 0.00 41.48 3.91
7008 7999 0.179043 TGCGAGTACCACCAAGCAAA 60.179 50.000 0.00 0.00 0.00 3.68
7009 8000 0.948678 GCGAGTACCACCAAGCAAAA 59.051 50.000 0.00 0.00 0.00 2.44
7011 8002 1.944024 CGAGTACCACCAAGCAAAACA 59.056 47.619 0.00 0.00 0.00 2.83
7013 8004 3.548014 CGAGTACCACCAAGCAAAACAAG 60.548 47.826 0.00 0.00 0.00 3.16
7016 8007 0.465287 CCACCAAGCAAAACAAGGCT 59.535 50.000 0.00 0.00 43.46 4.58
7017 8008 1.538849 CCACCAAGCAAAACAAGGCTC 60.539 52.381 0.00 0.00 40.01 4.70
7018 8009 0.385390 ACCAAGCAAAACAAGGCTCG 59.615 50.000 0.00 0.00 40.01 5.03
7041 8178 1.223487 GCGCCTTATCCTCCCAACA 59.777 57.895 0.00 0.00 0.00 3.33
7042 8179 1.095807 GCGCCTTATCCTCCCAACAC 61.096 60.000 0.00 0.00 0.00 3.32
7044 8181 1.339631 CGCCTTATCCTCCCAACACAA 60.340 52.381 0.00 0.00 0.00 3.33
7045 8182 2.092323 GCCTTATCCTCCCAACACAAC 58.908 52.381 0.00 0.00 0.00 3.32
7046 8183 2.723273 CCTTATCCTCCCAACACAACC 58.277 52.381 0.00 0.00 0.00 3.77
7047 8184 2.308866 CCTTATCCTCCCAACACAACCT 59.691 50.000 0.00 0.00 0.00 3.50
7048 8185 3.521937 CCTTATCCTCCCAACACAACCTA 59.478 47.826 0.00 0.00 0.00 3.08
7049 8186 4.514401 CTTATCCTCCCAACACAACCTAC 58.486 47.826 0.00 0.00 0.00 3.18
7082 8219 2.267006 CTCCAGCACCGTGAGCAT 59.733 61.111 1.65 0.00 0.00 3.79
7083 8220 2.046988 TCCAGCACCGTGAGCATG 60.047 61.111 1.65 0.00 0.00 4.06
7085 8222 3.807538 CAGCACCGTGAGCATGGC 61.808 66.667 8.61 0.00 41.20 4.40
7088 8225 3.049674 CACCGTGAGCATGGCGTT 61.050 61.111 8.61 0.00 41.20 4.84
7089 8226 3.049674 ACCGTGAGCATGGCGTTG 61.050 61.111 8.61 0.00 41.20 4.10
7090 8227 4.465512 CCGTGAGCATGGCGTTGC 62.466 66.667 4.23 4.23 43.09 4.17
7091 8228 3.725459 CGTGAGCATGGCGTTGCA 61.725 61.111 13.72 0.00 45.23 4.08
7093 8230 2.281692 TGAGCATGGCGTTGCACT 60.282 55.556 13.72 0.00 45.23 4.40
7094 8231 2.177531 GAGCATGGCGTTGCACTG 59.822 61.111 13.72 0.00 45.23 3.66
7162 8299 4.922026 GTCAACACCACCGCCGGT 62.922 66.667 1.02 1.02 41.07 5.28
7177 8314 3.982241 GGTGTGCTGTGCCAAGGC 61.982 66.667 3.61 3.61 42.35 4.35
7179 8316 4.519612 TGTGCTGTGCCAAGGCCA 62.520 61.111 5.01 5.43 41.09 5.36
7218 8355 4.265056 GGCCTGACAACCACCGGT 62.265 66.667 0.00 0.00 37.65 5.28
7219 8356 2.978010 GCCTGACAACCACCGGTG 60.978 66.667 28.26 28.26 35.34 4.94
7273 8410 1.104630 GGTGAGGTACGAGGAAGAGG 58.895 60.000 0.00 0.00 0.00 3.69
7274 8411 1.340795 GGTGAGGTACGAGGAAGAGGA 60.341 57.143 0.00 0.00 0.00 3.71
7275 8412 2.657143 GTGAGGTACGAGGAAGAGGAT 58.343 52.381 0.00 0.00 0.00 3.24
7338 8475 2.442272 GAGGCCTACAGCGAGGGA 60.442 66.667 4.42 0.00 45.17 4.20
7415 8552 1.467713 GCTCGTCTTCAAGGTACTCCG 60.468 57.143 0.00 0.00 38.49 4.63
7416 8553 2.082231 CTCGTCTTCAAGGTACTCCGA 58.918 52.381 0.00 0.00 38.49 4.55
7417 8554 2.683867 CTCGTCTTCAAGGTACTCCGAT 59.316 50.000 0.00 0.00 38.49 4.18
7418 8555 3.875727 CTCGTCTTCAAGGTACTCCGATA 59.124 47.826 0.00 0.00 38.49 2.92
7419 8556 3.624861 TCGTCTTCAAGGTACTCCGATAC 59.375 47.826 0.00 0.00 38.49 2.24
7420 8557 3.243002 CGTCTTCAAGGTACTCCGATACC 60.243 52.174 0.00 3.10 44.46 2.73
7426 8563 1.901591 GGTACTCCGATACCGATCCA 58.098 55.000 0.00 0.00 35.53 3.41
7427 8564 1.538950 GGTACTCCGATACCGATCCAC 59.461 57.143 0.00 0.00 35.53 4.02
7428 8565 1.538950 GTACTCCGATACCGATCCACC 59.461 57.143 0.00 0.00 38.22 4.61
7429 8566 0.106369 ACTCCGATACCGATCCACCA 60.106 55.000 0.00 0.00 38.22 4.17
7430 8567 0.598562 CTCCGATACCGATCCACCAG 59.401 60.000 0.00 0.00 38.22 4.00
7431 8568 1.006102 CCGATACCGATCCACCAGC 60.006 63.158 0.00 0.00 38.22 4.85
7432 8569 1.371758 CGATACCGATCCACCAGCG 60.372 63.158 0.00 0.00 38.22 5.18
7433 8570 1.664965 GATACCGATCCACCAGCGC 60.665 63.158 0.00 0.00 0.00 5.92
7434 8571 2.363711 GATACCGATCCACCAGCGCA 62.364 60.000 11.47 0.00 0.00 6.09
7435 8572 2.644555 ATACCGATCCACCAGCGCAC 62.645 60.000 11.47 0.00 0.00 5.34
7436 8573 4.758251 CCGATCCACCAGCGCACA 62.758 66.667 11.47 0.00 0.00 4.57
7437 8574 3.490759 CGATCCACCAGCGCACAC 61.491 66.667 11.47 0.00 0.00 3.82
7438 8575 3.490759 GATCCACCAGCGCACACG 61.491 66.667 11.47 0.00 44.07 4.49
7442 8579 3.792047 CACCAGCGCACACGGATG 61.792 66.667 11.47 0.00 40.57 3.51
7445 8582 4.450122 CAGCGCACACGGATGCAC 62.450 66.667 11.47 3.81 46.47 4.57
7448 8585 3.711842 CGCACACGGATGCACGTT 61.712 61.111 12.85 0.00 46.25 3.99
7449 8586 2.127270 GCACACGGATGCACGTTG 60.127 61.111 8.16 4.19 46.25 4.10
7450 8587 2.127270 CACACGGATGCACGTTGC 60.127 61.111 0.00 3.44 46.25 4.17
7451 8588 2.280797 ACACGGATGCACGTTGCT 60.281 55.556 0.00 0.00 46.25 3.91
7452 8589 1.891919 ACACGGATGCACGTTGCTT 60.892 52.632 0.00 5.14 46.25 3.91
7453 8590 1.154413 CACGGATGCACGTTGCTTC 60.154 57.895 13.62 13.62 46.25 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 8.417884 GCTGGACTTTCTAGAGTTCTACATTAT 58.582 37.037 0.00 0.00 0.00 1.28
16 17 7.616150 AGCTGGACTTTCTAGAGTTCTACATTA 59.384 37.037 0.00 0.00 0.00 1.90
17 18 6.439058 AGCTGGACTTTCTAGAGTTCTACATT 59.561 38.462 0.00 0.00 0.00 2.71
18 19 5.955355 AGCTGGACTTTCTAGAGTTCTACAT 59.045 40.000 0.00 0.00 0.00 2.29
19 20 5.326069 AGCTGGACTTTCTAGAGTTCTACA 58.674 41.667 0.00 0.00 0.00 2.74
20 21 5.907866 AGCTGGACTTTCTAGAGTTCTAC 57.092 43.478 0.00 0.00 0.00 2.59
21 22 6.959904 TCTAGCTGGACTTTCTAGAGTTCTA 58.040 40.000 0.00 0.00 35.28 2.10
22 23 5.822204 TCTAGCTGGACTTTCTAGAGTTCT 58.178 41.667 0.00 0.00 35.28 3.01
23 24 6.518208 TTCTAGCTGGACTTTCTAGAGTTC 57.482 41.667 0.00 0.00 39.66 3.01
24 25 6.295405 GGTTTCTAGCTGGACTTTCTAGAGTT 60.295 42.308 0.00 0.00 39.66 3.01
25 26 5.186215 GGTTTCTAGCTGGACTTTCTAGAGT 59.814 44.000 0.00 0.00 39.66 3.24
26 27 5.186021 TGGTTTCTAGCTGGACTTTCTAGAG 59.814 44.000 0.00 0.00 39.66 2.43
27 28 5.084519 TGGTTTCTAGCTGGACTTTCTAGA 58.915 41.667 0.00 0.00 37.58 2.43
28 29 5.407407 TGGTTTCTAGCTGGACTTTCTAG 57.593 43.478 0.00 0.00 33.04 2.43
29 30 5.307196 ACTTGGTTTCTAGCTGGACTTTCTA 59.693 40.000 0.00 0.00 0.00 2.10
30 31 4.103311 ACTTGGTTTCTAGCTGGACTTTCT 59.897 41.667 0.00 0.00 0.00 2.52
31 32 4.390264 ACTTGGTTTCTAGCTGGACTTTC 58.610 43.478 0.00 0.00 0.00 2.62
32 33 4.439253 ACTTGGTTTCTAGCTGGACTTT 57.561 40.909 0.00 0.00 0.00 2.66
33 34 4.439253 AACTTGGTTTCTAGCTGGACTT 57.561 40.909 0.00 0.00 0.00 3.01
34 35 4.439253 AAACTTGGTTTCTAGCTGGACT 57.561 40.909 0.00 0.00 28.86 3.85
35 36 4.023107 GGAAAACTTGGTTTCTAGCTGGAC 60.023 45.833 0.00 0.00 37.60 4.02
36 37 4.141251 AGGAAAACTTGGTTTCTAGCTGGA 60.141 41.667 10.44 0.00 37.60 3.86
37 38 4.145052 AGGAAAACTTGGTTTCTAGCTGG 58.855 43.478 10.44 0.00 37.60 4.85
38 39 5.066593 AGAGGAAAACTTGGTTTCTAGCTG 58.933 41.667 10.44 0.00 37.60 4.24
39 40 5.163195 TGAGAGGAAAACTTGGTTTCTAGCT 60.163 40.000 10.44 0.00 37.60 3.32
40 41 5.063880 TGAGAGGAAAACTTGGTTTCTAGC 58.936 41.667 10.44 2.04 37.60 3.42
41 42 6.525629 TCTGAGAGGAAAACTTGGTTTCTAG 58.474 40.000 10.44 0.00 37.60 2.43
42 43 6.494666 TCTGAGAGGAAAACTTGGTTTCTA 57.505 37.500 10.44 0.00 37.60 2.10
43 44 5.373812 TCTGAGAGGAAAACTTGGTTTCT 57.626 39.130 10.44 0.00 37.60 2.52
44 45 6.039829 ACAATCTGAGAGGAAAACTTGGTTTC 59.960 38.462 2.76 2.76 34.43 2.78
45 46 5.893824 ACAATCTGAGAGGAAAACTTGGTTT 59.106 36.000 0.00 0.00 37.34 3.27
46 47 5.300286 CACAATCTGAGAGGAAAACTTGGTT 59.700 40.000 0.00 0.00 0.00 3.67
47 48 4.823989 CACAATCTGAGAGGAAAACTTGGT 59.176 41.667 0.00 0.00 0.00 3.67
48 49 4.320788 GCACAATCTGAGAGGAAAACTTGG 60.321 45.833 0.00 0.00 0.00 3.61
49 50 4.276678 TGCACAATCTGAGAGGAAAACTTG 59.723 41.667 0.00 0.00 0.00 3.16
50 51 4.464008 TGCACAATCTGAGAGGAAAACTT 58.536 39.130 0.00 0.00 0.00 2.66
51 52 4.090761 TGCACAATCTGAGAGGAAAACT 57.909 40.909 0.00 0.00 0.00 2.66
52 53 4.456911 TGATGCACAATCTGAGAGGAAAAC 59.543 41.667 0.00 0.00 36.15 2.43
53 54 4.456911 GTGATGCACAATCTGAGAGGAAAA 59.543 41.667 0.00 0.00 36.15 2.29
54 55 4.005650 GTGATGCACAATCTGAGAGGAAA 58.994 43.478 0.00 0.00 36.15 3.13
55 56 3.603532 GTGATGCACAATCTGAGAGGAA 58.396 45.455 0.00 0.00 36.15 3.36
56 57 2.093288 GGTGATGCACAATCTGAGAGGA 60.093 50.000 0.00 0.00 35.86 3.71
57 58 2.286872 GGTGATGCACAATCTGAGAGG 58.713 52.381 0.00 0.00 35.86 3.69
58 59 2.981898 TGGTGATGCACAATCTGAGAG 58.018 47.619 0.00 0.00 35.86 3.20
59 60 3.639672 ATGGTGATGCACAATCTGAGA 57.360 42.857 0.00 0.00 35.86 3.27
310 311 3.460868 GCGGGGCCTTTTGATGGG 61.461 66.667 0.84 0.00 0.00 4.00
311 312 2.229690 CTTGCGGGGCCTTTTGATGG 62.230 60.000 0.84 0.00 0.00 3.51
312 313 1.216178 CTTGCGGGGCCTTTTGATG 59.784 57.895 0.84 0.00 0.00 3.07
313 314 0.039035 TACTTGCGGGGCCTTTTGAT 59.961 50.000 0.84 0.00 0.00 2.57
314 315 0.891904 GTACTTGCGGGGCCTTTTGA 60.892 55.000 0.84 0.00 0.00 2.69
315 316 1.175983 TGTACTTGCGGGGCCTTTTG 61.176 55.000 0.84 0.00 0.00 2.44
316 317 0.468400 TTGTACTTGCGGGGCCTTTT 60.468 50.000 0.84 0.00 0.00 2.27
317 318 0.468400 TTTGTACTTGCGGGGCCTTT 60.468 50.000 0.84 0.00 0.00 3.11
318 319 0.468400 TTTTGTACTTGCGGGGCCTT 60.468 50.000 0.84 0.00 0.00 4.35
319 320 0.251608 ATTTTGTACTTGCGGGGCCT 60.252 50.000 0.84 0.00 0.00 5.19
320 321 0.108851 CATTTTGTACTTGCGGGGCC 60.109 55.000 0.00 0.00 0.00 5.80
321 322 0.735978 GCATTTTGTACTTGCGGGGC 60.736 55.000 0.00 0.00 0.00 5.80
322 323 0.108851 GGCATTTTGTACTTGCGGGG 60.109 55.000 0.00 0.00 37.25 5.73
323 324 0.600557 TGGCATTTTGTACTTGCGGG 59.399 50.000 0.00 0.00 37.25 6.13
324 325 2.058057 GTTGGCATTTTGTACTTGCGG 58.942 47.619 0.00 0.00 37.25 5.69
325 326 1.713404 CGTTGGCATTTTGTACTTGCG 59.287 47.619 0.00 0.00 37.25 4.85
326 327 2.058057 CCGTTGGCATTTTGTACTTGC 58.942 47.619 0.00 0.00 35.64 4.01
327 328 3.634568 TCCGTTGGCATTTTGTACTTG 57.365 42.857 0.00 0.00 0.00 3.16
328 329 3.634910 ACTTCCGTTGGCATTTTGTACTT 59.365 39.130 0.00 0.00 0.00 2.24
329 330 3.219281 ACTTCCGTTGGCATTTTGTACT 58.781 40.909 0.00 0.00 0.00 2.73
330 331 3.561503 GACTTCCGTTGGCATTTTGTAC 58.438 45.455 0.00 0.00 0.00 2.90
331 332 2.554893 GGACTTCCGTTGGCATTTTGTA 59.445 45.455 0.00 0.00 0.00 2.41
332 333 1.339929 GGACTTCCGTTGGCATTTTGT 59.660 47.619 0.00 0.00 0.00 2.83
333 334 1.336795 GGGACTTCCGTTGGCATTTTG 60.337 52.381 0.00 0.00 36.71 2.44
334 335 0.966179 GGGACTTCCGTTGGCATTTT 59.034 50.000 0.00 0.00 36.71 1.82
335 336 0.112412 AGGGACTTCCGTTGGCATTT 59.888 50.000 0.00 0.00 41.52 2.32
336 337 0.609131 CAGGGACTTCCGTTGGCATT 60.609 55.000 0.00 0.00 41.52 3.56
337 338 1.002134 CAGGGACTTCCGTTGGCAT 60.002 57.895 0.00 0.00 41.52 4.40
338 339 2.429930 CAGGGACTTCCGTTGGCA 59.570 61.111 0.00 0.00 41.52 4.92
339 340 3.056328 GCAGGGACTTCCGTTGGC 61.056 66.667 0.00 0.00 41.52 4.52
340 341 2.359975 GGCAGGGACTTCCGTTGG 60.360 66.667 0.00 0.00 41.52 3.77
345 346 2.360475 GTGCTGGCAGGGACTTCC 60.360 66.667 17.64 0.00 43.78 3.46
346 347 1.673665 CTGTGCTGGCAGGGACTTC 60.674 63.158 17.64 0.00 34.60 3.01
347 348 2.149383 TCTGTGCTGGCAGGGACTT 61.149 57.895 17.64 0.00 34.60 3.01
348 349 2.527624 TCTGTGCTGGCAGGGACT 60.528 61.111 17.64 0.00 43.88 3.85
349 350 2.359230 GTCTGTGCTGGCAGGGAC 60.359 66.667 17.64 8.98 37.12 4.46
350 351 1.782201 AATGTCTGTGCTGGCAGGGA 61.782 55.000 17.64 0.00 37.12 4.20
351 352 0.896940 AAATGTCTGTGCTGGCAGGG 60.897 55.000 17.64 0.00 37.12 4.45
352 353 0.242825 CAAATGTCTGTGCTGGCAGG 59.757 55.000 17.64 0.00 37.12 4.85
353 354 0.388134 GCAAATGTCTGTGCTGGCAG 60.388 55.000 10.94 10.94 37.78 4.85
354 355 1.108132 TGCAAATGTCTGTGCTGGCA 61.108 50.000 0.00 0.00 41.48 4.92
355 356 0.032403 TTGCAAATGTCTGTGCTGGC 59.968 50.000 0.00 0.00 41.48 4.85
356 357 2.512485 TTTGCAAATGTCTGTGCTGG 57.488 45.000 8.05 0.00 41.48 4.85
357 358 3.644823 TGATTTGCAAATGTCTGTGCTG 58.355 40.909 28.67 0.00 41.48 4.41
358 359 4.530710 ATGATTTGCAAATGTCTGTGCT 57.469 36.364 28.67 2.32 41.48 4.40
359 360 5.407387 AGAAATGATTTGCAAATGTCTGTGC 59.593 36.000 28.67 12.85 41.29 4.57
360 361 8.024865 TCTAGAAATGATTTGCAAATGTCTGTG 58.975 33.333 28.67 18.43 0.00 3.66
361 362 8.114331 TCTAGAAATGATTTGCAAATGTCTGT 57.886 30.769 28.67 10.11 0.00 3.41
362 363 8.975410 TTCTAGAAATGATTTGCAAATGTCTG 57.025 30.769 28.67 16.76 0.00 3.51
363 364 9.985730 TTTTCTAGAAATGATTTGCAAATGTCT 57.014 25.926 28.67 23.11 0.00 3.41
370 371 9.598517 ACAAAGTTTTTCTAGAAATGATTTGCA 57.401 25.926 28.06 11.36 33.84 4.08
383 384 9.847224 AGGAAACTATGAGACAAAGTTTTTCTA 57.153 29.630 4.27 0.00 42.06 2.10
384 385 8.624776 CAGGAAACTATGAGACAAAGTTTTTCT 58.375 33.333 3.93 3.93 42.06 2.52
385 386 7.862873 CCAGGAAACTATGAGACAAAGTTTTTC 59.137 37.037 1.65 0.00 42.06 2.29
386 387 7.559897 TCCAGGAAACTATGAGACAAAGTTTTT 59.440 33.333 1.65 0.00 42.06 1.94
387 388 7.060421 TCCAGGAAACTATGAGACAAAGTTTT 58.940 34.615 1.65 0.00 42.06 2.43
388 389 6.601332 TCCAGGAAACTATGAGACAAAGTTT 58.399 36.000 0.00 0.00 44.05 2.66
389 390 6.187727 TCCAGGAAACTATGAGACAAAGTT 57.812 37.500 0.00 0.00 40.21 2.66
390 391 5.825593 TCCAGGAAACTATGAGACAAAGT 57.174 39.130 0.00 0.00 40.21 2.66
391 392 6.903419 GTTTCCAGGAAACTATGAGACAAAG 58.097 40.000 30.73 0.00 45.65 2.77
415 416 3.347216 ACATTGATCGAACTTTCCTGGG 58.653 45.455 0.00 0.00 0.00 4.45
416 417 4.256920 AGACATTGATCGAACTTTCCTGG 58.743 43.478 0.00 0.00 0.00 4.45
419 420 6.128634 ACGTTAAGACATTGATCGAACTTTCC 60.129 38.462 0.00 0.00 0.00 3.13
460 461 2.165641 CCCCCGCAAAATAAAAGTCCTC 59.834 50.000 0.00 0.00 0.00 3.71
461 462 2.176045 CCCCCGCAAAATAAAAGTCCT 58.824 47.619 0.00 0.00 0.00 3.85
462 463 1.897133 ACCCCCGCAAAATAAAAGTCC 59.103 47.619 0.00 0.00 0.00 3.85
463 464 2.297880 ACACCCCCGCAAAATAAAAGTC 59.702 45.455 0.00 0.00 0.00 3.01
464 465 2.321719 ACACCCCCGCAAAATAAAAGT 58.678 42.857 0.00 0.00 0.00 2.66
465 466 3.063485 CAACACCCCCGCAAAATAAAAG 58.937 45.455 0.00 0.00 0.00 2.27
466 467 2.807108 GCAACACCCCCGCAAAATAAAA 60.807 45.455 0.00 0.00 0.00 1.52
467 468 1.270358 GCAACACCCCCGCAAAATAAA 60.270 47.619 0.00 0.00 0.00 1.40
468 469 0.318762 GCAACACCCCCGCAAAATAA 59.681 50.000 0.00 0.00 0.00 1.40
469 470 0.540830 AGCAACACCCCCGCAAAATA 60.541 50.000 0.00 0.00 0.00 1.40
470 471 1.406860 AAGCAACACCCCCGCAAAAT 61.407 50.000 0.00 0.00 0.00 1.82
471 472 2.022240 GAAGCAACACCCCCGCAAAA 62.022 55.000 0.00 0.00 0.00 2.44
472 473 2.443016 AAGCAACACCCCCGCAAA 60.443 55.556 0.00 0.00 0.00 3.68
473 474 2.909965 GAAGCAACACCCCCGCAA 60.910 61.111 0.00 0.00 0.00 4.85
474 475 4.196778 TGAAGCAACACCCCCGCA 62.197 61.111 0.00 0.00 0.00 5.69
475 476 3.365265 CTGAAGCAACACCCCCGC 61.365 66.667 0.00 0.00 0.00 6.13
476 477 2.672996 CCTGAAGCAACACCCCCG 60.673 66.667 0.00 0.00 0.00 5.73
477 478 1.603739 GTCCTGAAGCAACACCCCC 60.604 63.158 0.00 0.00 0.00 5.40
478 479 0.467290 TTGTCCTGAAGCAACACCCC 60.467 55.000 0.00 0.00 0.00 4.95
479 480 0.668535 GTTGTCCTGAAGCAACACCC 59.331 55.000 0.00 0.00 43.03 4.61
480 481 0.668535 GGTTGTCCTGAAGCAACACC 59.331 55.000 9.20 0.00 44.70 4.16
481 482 1.388547 TGGTTGTCCTGAAGCAACAC 58.611 50.000 9.20 1.01 44.70 3.32
482 483 2.023673 CTTGGTTGTCCTGAAGCAACA 58.976 47.619 9.20 0.00 44.70 3.33
483 484 1.338020 CCTTGGTTGTCCTGAAGCAAC 59.662 52.381 0.00 0.00 42.86 4.17
484 485 1.691196 CCTTGGTTGTCCTGAAGCAA 58.309 50.000 0.00 0.00 40.18 3.91
485 486 0.823356 GCCTTGGTTGTCCTGAAGCA 60.823 55.000 0.00 0.00 34.23 3.91
486 487 0.823356 TGCCTTGGTTGTCCTGAAGC 60.823 55.000 0.00 0.00 34.23 3.86
487 488 0.954452 GTGCCTTGGTTGTCCTGAAG 59.046 55.000 0.00 0.00 34.23 3.02
488 489 0.257328 TGTGCCTTGGTTGTCCTGAA 59.743 50.000 0.00 0.00 34.23 3.02
489 490 0.257328 TTGTGCCTTGGTTGTCCTGA 59.743 50.000 0.00 0.00 34.23 3.86
490 491 1.110442 TTTGTGCCTTGGTTGTCCTG 58.890 50.000 0.00 0.00 34.23 3.86
491 492 1.111277 GTTTGTGCCTTGGTTGTCCT 58.889 50.000 0.00 0.00 34.23 3.85
530 531 4.891627 TCAACGAGAGCAATGTTCAAAA 57.108 36.364 0.00 0.00 0.00 2.44
783 786 1.493854 AAGTATGTGCGGGGGTGGAA 61.494 55.000 0.00 0.00 0.00 3.53
784 787 1.906105 GAAGTATGTGCGGGGGTGGA 61.906 60.000 0.00 0.00 0.00 4.02
793 796 2.275318 GCAGTGAGAGGAAGTATGTGC 58.725 52.381 0.00 0.00 0.00 4.57
795 798 1.834263 GGGCAGTGAGAGGAAGTATGT 59.166 52.381 0.00 0.00 0.00 2.29
796 799 1.202463 CGGGCAGTGAGAGGAAGTATG 60.202 57.143 0.00 0.00 0.00 2.39
798 801 0.251653 ACGGGCAGTGAGAGGAAGTA 60.252 55.000 0.00 0.00 0.00 2.24
799 802 1.534235 ACGGGCAGTGAGAGGAAGT 60.534 57.895 0.00 0.00 0.00 3.01
1432 1838 1.478105 AGAAGAATCAAAATGGGGCGC 59.522 47.619 0.00 0.00 0.00 6.53
1433 1839 3.445096 AGAAGAAGAATCAAAATGGGGCG 59.555 43.478 0.00 0.00 0.00 6.13
1434 1840 4.463891 TGAGAAGAAGAATCAAAATGGGGC 59.536 41.667 0.00 0.00 0.00 5.80
1478 1889 0.174389 TGAGCTGAACGGATCTGAGC 59.826 55.000 9.00 7.09 0.00 4.26
1543 1954 9.747293 GTATTTCTAGTCTCTACAACCATTACC 57.253 37.037 0.00 0.00 0.00 2.85
1569 1980 5.335348 CCCCAACAACAATTAACTAAGTCCG 60.335 44.000 0.00 0.00 0.00 4.79
1631 2042 1.293963 GGAACTCCCGCAAACCGTAC 61.294 60.000 0.00 0.00 34.38 3.67
1632 2043 1.004679 GGAACTCCCGCAAACCGTA 60.005 57.895 0.00 0.00 34.38 4.02
1634 2045 2.032071 AGGAACTCCCGCAAACCG 59.968 61.111 0.00 0.00 40.87 4.44
1635 2046 1.072505 TCAGGAACTCCCGCAAACC 59.927 57.895 0.00 0.00 40.87 3.27
1636 2047 1.235281 GGTCAGGAACTCCCGCAAAC 61.235 60.000 0.00 0.00 40.87 2.93
1710 2121 2.047274 TCCCTTGCCTTCTTCGCG 60.047 61.111 0.00 0.00 0.00 5.87
1797 2208 0.545071 TGGACTGATCCTGCAGGTCA 60.545 55.000 31.58 28.39 46.43 4.02
1803 2214 1.527844 GGCCATGGACTGATCCTGC 60.528 63.158 18.40 0.00 46.43 4.85
1887 2298 2.615493 GGTCATCACCGTCTTCACCAAT 60.615 50.000 0.00 0.00 31.06 3.16
1940 2351 1.138859 ACCAAGAAGCACCAAAAAGGC 59.861 47.619 0.00 0.00 43.14 4.35
1941 2352 2.430332 TGACCAAGAAGCACCAAAAAGG 59.570 45.455 0.00 0.00 45.67 3.11
1942 2353 3.799281 TGACCAAGAAGCACCAAAAAG 57.201 42.857 0.00 0.00 0.00 2.27
1943 2354 4.081198 ACATTGACCAAGAAGCACCAAAAA 60.081 37.500 0.00 0.00 0.00 1.94
1944 2355 3.450457 ACATTGACCAAGAAGCACCAAAA 59.550 39.130 0.00 0.00 0.00 2.44
1945 2356 3.030291 ACATTGACCAAGAAGCACCAAA 58.970 40.909 0.00 0.00 0.00 3.28
1946 2357 2.665165 ACATTGACCAAGAAGCACCAA 58.335 42.857 0.00 0.00 0.00 3.67
1947 2358 2.363306 ACATTGACCAAGAAGCACCA 57.637 45.000 0.00 0.00 0.00 4.17
1991 2412 6.818644 ACATATAGAAACCGGATATGCATGAC 59.181 38.462 9.46 2.81 37.15 3.06
2011 2432 6.169557 TCGCCTACATTAGTGGAAACATAT 57.830 37.500 0.00 0.00 46.14 1.78
2032 2453 7.169308 ACCTAACAACGCTAGAAATATGAATCG 59.831 37.037 0.00 0.00 0.00 3.34
2060 2482 5.763698 ACCAGTTGTTAACCTTAAAGCTCTC 59.236 40.000 2.48 0.00 0.00 3.20
2458 2902 1.959042 ATGGCTTGGATGTAAGAGCG 58.041 50.000 0.00 0.00 36.02 5.03
2482 2926 6.879458 TCATCTCCCAGTTTCTAGCTTTAAAC 59.121 38.462 13.11 13.11 36.13 2.01
2494 2938 1.075601 TGCCCTTCATCTCCCAGTTT 58.924 50.000 0.00 0.00 0.00 2.66
2557 3001 0.668706 CAGGACCTCTGCTGTCAACG 60.669 60.000 0.00 0.00 36.60 4.10
2611 3055 4.764172 ACGAAGAAGCAGAGAATAAGCAT 58.236 39.130 0.00 0.00 0.00 3.79
2631 3075 4.915085 CCATACAAAACAGGCAAAACTACG 59.085 41.667 0.00 0.00 0.00 3.51
2635 3079 4.688021 TGACCATACAAAACAGGCAAAAC 58.312 39.130 0.00 0.00 0.00 2.43
2709 3153 0.034477 ATGGCTTCTGGGGGTTTACG 60.034 55.000 0.00 0.00 0.00 3.18
2712 3156 1.431243 TGTTATGGCTTCTGGGGGTTT 59.569 47.619 0.00 0.00 0.00 3.27
2814 3258 3.008923 TGATTACATGGGCAAGACAGTCA 59.991 43.478 2.66 0.00 0.00 3.41
2992 3436 5.146460 CACACACAGTAATTTGGATGTTCG 58.854 41.667 0.00 0.00 0.00 3.95
3128 3586 1.893544 TTGAAAAACGCCGTATCCCA 58.106 45.000 0.00 0.00 0.00 4.37
3248 3707 2.954318 CCAAATGGGGCACTATTCTCTG 59.046 50.000 0.00 0.00 0.00 3.35
3413 3893 1.154016 CTGCTCATGCTTGTGCTGC 60.154 57.895 22.26 12.74 41.73 5.25
4006 4895 6.251655 GACTCAAAAACCTAGACTAGTCGA 57.748 41.667 17.07 11.32 34.09 4.20
4274 5255 6.932356 TCAGGAAGATCATTAATGTGAAGC 57.068 37.500 14.97 0.00 0.00 3.86
4378 5359 9.017509 TCGTAGTGGAATCTCTAAAAAGACTTA 57.982 33.333 0.00 0.00 0.00 2.24
4440 5421 5.245531 ACGGAGCAAAATGAGTGAATCTAA 58.754 37.500 0.00 0.00 0.00 2.10
4497 5478 8.912614 ATATTACTCCCTCCGTTCCTAAATAT 57.087 34.615 0.00 0.00 0.00 1.28
4498 5479 9.827198 TTATATTACTCCCTCCGTTCCTAAATA 57.173 33.333 0.00 0.00 0.00 1.40
4499 5480 8.731591 TTATATTACTCCCTCCGTTCCTAAAT 57.268 34.615 0.00 0.00 0.00 1.40
4500 5481 8.551682 TTTATATTACTCCCTCCGTTCCTAAA 57.448 34.615 0.00 0.00 0.00 1.85
4501 5482 7.786464 ACTTTATATTACTCCCTCCGTTCCTAA 59.214 37.037 0.00 0.00 0.00 2.69
4502 5483 7.232127 CACTTTATATTACTCCCTCCGTTCCTA 59.768 40.741 0.00 0.00 0.00 2.94
4503 5484 6.041751 CACTTTATATTACTCCCTCCGTTCCT 59.958 42.308 0.00 0.00 0.00 3.36
4504 5485 6.221659 CACTTTATATTACTCCCTCCGTTCC 58.778 44.000 0.00 0.00 0.00 3.62
4505 5486 5.695363 GCACTTTATATTACTCCCTCCGTTC 59.305 44.000 0.00 0.00 0.00 3.95
4506 5487 5.365895 AGCACTTTATATTACTCCCTCCGTT 59.634 40.000 0.00 0.00 0.00 4.44
4507 5488 4.900054 AGCACTTTATATTACTCCCTCCGT 59.100 41.667 0.00 0.00 0.00 4.69
4508 5489 5.244178 AGAGCACTTTATATTACTCCCTCCG 59.756 44.000 0.00 0.00 0.00 4.63
4509 5490 6.673839 AGAGCACTTTATATTACTCCCTCC 57.326 41.667 0.00 0.00 0.00 4.30
4510 5491 8.204836 TGAAAGAGCACTTTATATTACTCCCTC 58.795 37.037 9.22 0.00 44.97 4.30
4726 5707 2.159142 ACCACGAATCATAGGGTCGTTC 60.159 50.000 4.63 0.00 45.17 3.95
4964 5945 8.091449 AGCAATGCTAGTATTCATTAGGTAGTC 58.909 37.037 5.69 0.00 36.99 2.59
5104 6085 9.251440 ACACAGGAATATACACTACTAGAACAA 57.749 33.333 0.00 0.00 0.00 2.83
5111 6092 7.399191 TCCAAGAACACAGGAATATACACTACT 59.601 37.037 0.00 0.00 0.00 2.57
5127 6108 2.859806 GCAGTTGCACATCCAAGAACAC 60.860 50.000 0.00 0.00 41.59 3.32
5203 6184 8.954729 TCATGGAATATTTCTATTAAGGGGTCA 58.045 33.333 0.00 0.00 0.00 4.02
5204 6185 9.232473 GTCATGGAATATTTCTATTAAGGGGTC 57.768 37.037 0.00 0.00 0.00 4.46
5263 6244 9.319143 CACTAGCAATGGTATATAATTAGAGGC 57.681 37.037 0.00 0.00 0.00 4.70
5290 6271 7.422399 ACTAGCTATTGCGAAAAGAAAAACAA 58.578 30.769 0.00 0.00 45.42 2.83
5373 6359 1.814394 TGGTTCACTGCTACGATACGT 59.186 47.619 0.00 0.00 44.35 3.57
5458 6444 3.554934 TGAAGGACAAACAGCACATCTT 58.445 40.909 0.00 0.00 0.00 2.40
5483 6469 3.412386 CGAAAAGAAGGGGTGACAGAAT 58.588 45.455 0.00 0.00 0.00 2.40
5694 6680 3.531207 CGGCCCTCAGCGATCTCA 61.531 66.667 0.00 0.00 45.17 3.27
5809 6795 2.227865 TCTTGGCTACGGTTTCAATTGC 59.772 45.455 0.00 0.00 0.00 3.56
5844 6830 3.057337 CCGTTCCAGTCCGGTCTT 58.943 61.111 0.00 0.00 39.38 3.01
5937 6923 3.281727 AGGAACTTTGCAGACTTGACA 57.718 42.857 0.00 0.00 27.25 3.58
6015 7001 0.970427 CATGGTGCCCCTGGTAAACC 60.970 60.000 0.00 0.00 0.00 3.27
6330 7316 1.528129 GGCTCACTTGCTGCTTTACT 58.472 50.000 0.00 0.00 0.00 2.24
6333 7319 2.263741 CGGGCTCACTTGCTGCTTT 61.264 57.895 0.00 0.00 0.00 3.51
6354 7340 1.444895 CACGGCAGCTTTGAATGGC 60.445 57.895 0.00 0.00 38.54 4.40
6442 7431 2.037772 GAGCAGGGTCTCACTTCTTCAA 59.962 50.000 0.00 0.00 33.41 2.69
6443 7432 1.620819 GAGCAGGGTCTCACTTCTTCA 59.379 52.381 0.00 0.00 33.41 3.02
6444 7433 1.899142 AGAGCAGGGTCTCACTTCTTC 59.101 52.381 0.00 0.00 35.59 2.87
6455 7444 1.400737 GGACGTACATAGAGCAGGGT 58.599 55.000 0.00 0.00 0.00 4.34
6460 7449 2.029623 TCAAGGGGACGTACATAGAGC 58.970 52.381 0.00 0.00 0.00 4.09
6472 7462 5.880332 CGATGATTTAACTTCTTCAAGGGGA 59.120 40.000 0.00 0.00 33.37 4.81
6536 7527 2.378445 ACCAACCAAGCAACAACAAC 57.622 45.000 0.00 0.00 0.00 3.32
6537 7528 2.613977 CCAACCAACCAAGCAACAACAA 60.614 45.455 0.00 0.00 0.00 2.83
6538 7529 1.066573 CCAACCAACCAAGCAACAACA 60.067 47.619 0.00 0.00 0.00 3.33
6723 7714 2.258013 CGAGCAGGCGAAAACCCAA 61.258 57.895 0.00 0.00 0.00 4.12
6847 7838 5.018539 TCAAAGAAAGAACAACGAGAGGA 57.981 39.130 0.00 0.00 0.00 3.71
6854 7845 8.978539 GGATAAACCATTCAAAGAAAGAACAAC 58.021 33.333 0.00 0.00 38.79 3.32
6872 7863 2.158957 TGACAGAGCATCCGGATAAACC 60.159 50.000 18.63 6.90 33.66 3.27
6879 7870 0.463295 AGCATTGACAGAGCATCCGG 60.463 55.000 0.00 0.00 33.66 5.14
6880 7871 0.656259 CAGCATTGACAGAGCATCCG 59.344 55.000 4.34 0.00 33.66 4.18
6886 7877 3.624305 GCATGCAGCATTGACAGAG 57.376 52.632 14.21 0.00 44.79 3.35
6899 7890 1.289109 CTTTGCCAGCACAAGCATGC 61.289 55.000 10.51 10.51 46.50 4.06
6900 7891 0.315886 TCTTTGCCAGCACAAGCATG 59.684 50.000 0.00 0.00 45.49 4.06
6901 7892 1.067142 CATCTTTGCCAGCACAAGCAT 60.067 47.619 0.00 0.00 45.49 3.79
6902 7893 0.315886 CATCTTTGCCAGCACAAGCA 59.684 50.000 0.00 0.00 45.49 3.91
6903 7894 0.599558 TCATCTTTGCCAGCACAAGC 59.400 50.000 0.00 0.00 42.56 4.01
6904 7895 1.402456 GCTCATCTTTGCCAGCACAAG 60.402 52.381 0.00 0.37 0.00 3.16
6906 7897 1.579964 CGCTCATCTTTGCCAGCACA 61.580 55.000 0.00 0.00 0.00 4.57
6908 7899 1.302752 ACGCTCATCTTTGCCAGCA 60.303 52.632 0.00 0.00 0.00 4.41
6909 7900 1.136147 CACGCTCATCTTTGCCAGC 59.864 57.895 0.00 0.00 0.00 4.85
6910 7901 0.725686 CTCACGCTCATCTTTGCCAG 59.274 55.000 0.00 0.00 0.00 4.85
6911 7902 0.321346 TCTCACGCTCATCTTTGCCA 59.679 50.000 0.00 0.00 0.00 4.92
6912 7903 0.723981 GTCTCACGCTCATCTTTGCC 59.276 55.000 0.00 0.00 0.00 4.52
6913 7904 0.723981 GGTCTCACGCTCATCTTTGC 59.276 55.000 0.00 0.00 0.00 3.68
6914 7905 2.084610 TGGTCTCACGCTCATCTTTG 57.915 50.000 0.00 0.00 0.00 2.77
6915 7906 3.005554 CAATGGTCTCACGCTCATCTTT 58.994 45.455 0.00 0.00 0.00 2.52
6916 7907 2.625737 CAATGGTCTCACGCTCATCTT 58.374 47.619 0.00 0.00 0.00 2.40
6917 7908 1.741732 GCAATGGTCTCACGCTCATCT 60.742 52.381 0.00 0.00 0.00 2.90
6918 7909 0.654683 GCAATGGTCTCACGCTCATC 59.345 55.000 0.00 0.00 0.00 2.92
6919 7910 0.036105 TGCAATGGTCTCACGCTCAT 60.036 50.000 0.00 0.00 0.00 2.90
6920 7911 0.950555 GTGCAATGGTCTCACGCTCA 60.951 55.000 0.00 0.00 0.00 4.26
6921 7912 0.950555 TGTGCAATGGTCTCACGCTC 60.951 55.000 0.00 0.00 33.69 5.03
6922 7913 0.321919 ATGTGCAATGGTCTCACGCT 60.322 50.000 0.00 0.00 33.69 5.07
6923 7914 0.523072 AATGTGCAATGGTCTCACGC 59.477 50.000 0.00 0.00 33.69 5.34
6924 7915 1.135603 CCAATGTGCAATGGTCTCACG 60.136 52.381 6.33 0.00 33.69 4.35
6927 7918 0.889994 TGCCAATGTGCAATGGTCTC 59.110 50.000 14.03 1.47 38.56 3.36
6928 7919 1.340088 TTGCCAATGTGCAATGGTCT 58.660 45.000 14.03 0.00 45.77 3.85
6935 7926 5.996513 ACAAGAAATTATTTGCCAATGTGCA 59.003 32.000 0.00 0.00 40.07 4.57
6936 7927 6.147492 TGACAAGAAATTATTTGCCAATGTGC 59.853 34.615 0.00 0.00 0.00 4.57
6937 7928 7.148540 CCTGACAAGAAATTATTTGCCAATGTG 60.149 37.037 0.00 0.00 0.00 3.21
6940 7931 6.213195 TCCCTGACAAGAAATTATTTGCCAAT 59.787 34.615 0.00 0.00 0.00 3.16
6942 7933 5.083122 TCCCTGACAAGAAATTATTTGCCA 58.917 37.500 0.00 0.00 0.00 4.92
6943 7934 5.418840 TCTCCCTGACAAGAAATTATTTGCC 59.581 40.000 0.00 0.00 0.00 4.52
6944 7935 6.515272 TCTCCCTGACAAGAAATTATTTGC 57.485 37.500 0.00 0.00 0.00 3.68
6945 7936 7.559170 AGGATCTCCCTGACAAGAAATTATTTG 59.441 37.037 0.00 1.47 45.61 2.32
6946 7937 7.646884 AGGATCTCCCTGACAAGAAATTATTT 58.353 34.615 0.00 0.00 45.61 1.40
6947 7938 7.218314 AGGATCTCCCTGACAAGAAATTATT 57.782 36.000 0.00 0.00 45.61 1.40
6948 7939 6.838401 AGGATCTCCCTGACAAGAAATTAT 57.162 37.500 0.00 0.00 45.61 1.28
6962 7953 0.747283 CAGCACAGCAAGGATCTCCC 60.747 60.000 0.00 0.00 36.42 4.30
6963 7954 1.375098 GCAGCACAGCAAGGATCTCC 61.375 60.000 0.00 0.00 0.00 3.71
6966 7957 1.012841 GTAGCAGCACAGCAAGGATC 58.987 55.000 0.00 0.00 36.85 3.36
6967 7958 0.393537 GGTAGCAGCACAGCAAGGAT 60.394 55.000 0.00 0.00 36.85 3.24
6969 7960 2.042831 GGGTAGCAGCACAGCAAGG 61.043 63.158 0.00 0.00 36.85 3.61
6970 7961 0.607489 AAGGGTAGCAGCACAGCAAG 60.607 55.000 0.00 0.00 36.85 4.01
6971 7962 0.890542 CAAGGGTAGCAGCACAGCAA 60.891 55.000 0.00 0.00 36.85 3.91
6972 7963 1.302752 CAAGGGTAGCAGCACAGCA 60.303 57.895 0.00 0.00 36.85 4.41
6973 7964 2.694760 GCAAGGGTAGCAGCACAGC 61.695 63.158 0.00 0.00 0.00 4.40
6974 7965 2.393768 CGCAAGGGTAGCAGCACAG 61.394 63.158 0.00 0.00 0.00 3.66
6975 7966 2.358615 CGCAAGGGTAGCAGCACA 60.359 61.111 0.00 0.00 0.00 4.57
6976 7967 2.047274 TCGCAAGGGTAGCAGCAC 60.047 61.111 0.00 0.00 38.47 4.40
6986 7977 1.298859 GCTTGGTGGTACTCGCAAGG 61.299 60.000 0.00 0.00 33.78 3.61
6987 7978 0.602638 TGCTTGGTGGTACTCGCAAG 60.603 55.000 0.00 0.00 35.14 4.01
6988 7979 0.179043 TTGCTTGGTGGTACTCGCAA 60.179 50.000 0.00 0.00 35.30 4.85
6989 7980 0.179043 TTTGCTTGGTGGTACTCGCA 60.179 50.000 0.00 0.00 0.00 5.10
6990 7981 0.948678 TTTTGCTTGGTGGTACTCGC 59.051 50.000 0.00 0.00 0.00 5.03
6991 7982 1.944024 TGTTTTGCTTGGTGGTACTCG 59.056 47.619 0.00 0.00 0.00 4.18
6992 7983 3.243401 CCTTGTTTTGCTTGGTGGTACTC 60.243 47.826 0.00 0.00 0.00 2.59
6993 7984 2.693074 CCTTGTTTTGCTTGGTGGTACT 59.307 45.455 0.00 0.00 0.00 2.73
6994 7985 2.801699 GCCTTGTTTTGCTTGGTGGTAC 60.802 50.000 0.00 0.00 0.00 3.34
6996 7987 0.177836 GCCTTGTTTTGCTTGGTGGT 59.822 50.000 0.00 0.00 0.00 4.16
6998 7989 1.856802 GAGCCTTGTTTTGCTTGGTG 58.143 50.000 0.00 0.00 38.11 4.17
7001 7992 2.604614 GGTACGAGCCTTGTTTTGCTTG 60.605 50.000 0.00 0.00 43.33 4.01
7003 7994 1.235724 GGTACGAGCCTTGTTTTGCT 58.764 50.000 0.00 0.00 41.42 3.91
7004 7995 3.767287 GGTACGAGCCTTGTTTTGC 57.233 52.632 0.00 0.00 0.00 3.68
7018 8009 1.006454 GGAGGATAAGGCGCGGTAC 60.006 63.158 8.83 0.00 0.00 3.34
7041 8178 4.496670 GCGATGAGCGTAGGTTGT 57.503 55.556 0.00 0.00 43.41 3.32
7066 8203 2.046988 CATGCTCACGGTGCTGGA 60.047 61.111 2.51 0.43 0.00 3.86
7073 8210 4.465512 GCAACGCCATGCTCACGG 62.466 66.667 1.30 0.00 43.06 4.94
7075 8212 2.126734 GTGCAACGCCATGCTCAC 60.127 61.111 9.49 0.00 46.54 3.51
7142 8279 2.358247 GGCGGTGGTGTTGACGAT 60.358 61.111 0.00 0.00 0.00 3.73
7162 8299 4.519612 TGGCCTTGGCACAGCACA 62.520 61.111 14.04 0.00 42.39 4.57
7203 8340 2.281484 CCACCGGTGGTTGTCAGG 60.281 66.667 40.44 16.98 45.53 3.86
7273 8410 2.223745 GTACTCCTCCTCGTCCTCATC 58.776 57.143 0.00 0.00 0.00 2.92
7274 8411 1.475392 CGTACTCCTCCTCGTCCTCAT 60.475 57.143 0.00 0.00 0.00 2.90
7275 8412 0.107800 CGTACTCCTCCTCGTCCTCA 60.108 60.000 0.00 0.00 0.00 3.86
7324 8461 4.577246 CGCTCCCTCGCTGTAGGC 62.577 72.222 0.00 0.00 35.09 3.93
7390 8527 1.738099 CCTTGAAGACGAGCACGGG 60.738 63.158 8.74 0.00 44.46 5.28
7415 8552 1.664965 GCGCTGGTGGATCGGTATC 60.665 63.158 0.00 0.00 0.00 2.24
7416 8553 2.421739 GCGCTGGTGGATCGGTAT 59.578 61.111 0.00 0.00 0.00 2.73
7417 8554 3.071837 TGCGCTGGTGGATCGGTA 61.072 61.111 9.73 0.00 0.00 4.02
7418 8555 4.760047 GTGCGCTGGTGGATCGGT 62.760 66.667 9.73 0.00 0.00 4.69
7419 8556 4.758251 TGTGCGCTGGTGGATCGG 62.758 66.667 9.73 0.00 0.00 4.18
7420 8557 3.490759 GTGTGCGCTGGTGGATCG 61.491 66.667 9.73 0.00 0.00 3.69
7421 8558 3.490759 CGTGTGCGCTGGTGGATC 61.491 66.667 9.73 0.00 0.00 3.36
7425 8562 3.792047 CATCCGTGTGCGCTGGTG 61.792 66.667 9.73 3.33 36.67 4.17
7432 8569 2.127270 CAACGTGCATCCGTGTGC 60.127 61.111 2.87 2.61 45.25 4.57
7433 8570 2.127270 GCAACGTGCATCCGTGTG 60.127 61.111 2.87 5.64 44.26 3.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.