Multiple sequence alignment - TraesCS4D01G047600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G047600 chr4D 100.000 7944 0 0 1 7944 23411956 23419899 0.000000e+00 14670.0
1 TraesCS4D01G047600 chr4D 97.143 35 1 0 186 220 23412034 23412068 8.610000e-05 60.2
2 TraesCS4D01G047600 chr4D 97.143 35 1 0 79 113 23412141 23412175 8.610000e-05 60.2
3 TraesCS4D01G047600 chr4D 100.000 28 0 0 193 220 23412066 23412093 1.400000e-02 52.8
4 TraesCS4D01G047600 chr4D 100.000 28 0 0 111 138 23412148 23412175 1.400000e-02 52.8
5 TraesCS4D01G047600 chr4B 95.301 4320 116 28 1883 6152 35507458 35511740 0.000000e+00 6772.0
6 TraesCS4D01G047600 chr4B 91.978 1633 79 24 286 1885 35505684 35507297 0.000000e+00 2242.0
7 TraesCS4D01G047600 chr4B 91.346 936 47 22 6361 7291 35514341 35515247 0.000000e+00 1249.0
8 TraesCS4D01G047600 chr4B 85.133 713 71 19 7228 7933 35515269 35515953 0.000000e+00 697.0
9 TraesCS4D01G047600 chr4B 95.833 72 3 0 164 235 35505617 35505688 5.040000e-22 117.0
10 TraesCS4D01G047600 chr4B 98.333 60 1 0 1543 1602 35507013 35507072 1.090000e-18 106.0
11 TraesCS4D01G047600 chr4B 93.333 60 4 0 1601 1660 35506955 35507014 1.100000e-13 89.8
12 TraesCS4D01G047600 chr4A 94.852 2370 82 14 1603 3941 578546497 578544137 0.000000e+00 3664.0
13 TraesCS4D01G047600 chr4A 92.024 1981 84 30 5234 7181 578542632 578540693 0.000000e+00 2715.0
14 TraesCS4D01G047600 chr4A 94.910 1277 43 11 3933 5204 578544011 578542752 0.000000e+00 1978.0
15 TraesCS4D01G047600 chr4A 88.026 1094 68 25 517 1599 578547491 578546450 0.000000e+00 1236.0
16 TraesCS4D01G047600 chr4A 85.237 359 26 16 7586 7944 578540111 578539780 2.120000e-90 344.0
17 TraesCS4D01G047600 chr4A 89.161 286 15 10 7307 7592 578540499 578540230 7.630000e-90 342.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G047600 chr4D 23411956 23419899 7943 False 14670.000000 14670 100.000000 1 7944 1 chr4D.!!$F1 7943
1 TraesCS4D01G047600 chr4B 35505617 35515953 10336 False 1610.400000 6772 93.036714 164 7933 7 chr4B.!!$F1 7769
2 TraesCS4D01G047600 chr4A 578539780 578547491 7711 True 1713.166667 3664 90.701667 517 7944 6 chr4A.!!$R1 7427

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
56 57 0.036388 TGCCTTCTTTGGTAGCGGAG 60.036 55.000 0.00 0.00 0.00 4.63 F
278 279 0.037590 TTTGCGATGGCCTACTGGTT 59.962 50.000 3.32 0.00 38.85 3.67 F
367 369 0.537143 TGTTGTGTGGCCATCTGGTC 60.537 55.000 9.72 0.00 41.09 4.02 F
1235 1269 0.179067 TTCCCTGCGTTTTCTCGTGT 60.179 50.000 0.00 0.00 0.00 4.49 F
1361 1396 0.622136 TAGTCGGTCCTGAGCCACTA 59.378 55.000 0.60 0.60 0.00 2.74 F
1498 1533 1.732809 GCTTCTCCGACTTTGGTAAGC 59.267 52.381 8.61 8.61 39.79 3.09 F
2224 2436 2.700722 TGCCAACGACCAAGCATATA 57.299 45.000 0.00 0.00 0.00 0.86 F
2225 2437 3.207265 TGCCAACGACCAAGCATATAT 57.793 42.857 0.00 0.00 0.00 0.86 F
4031 4422 1.209127 GGGCATTGTCAACCGTTCG 59.791 57.895 0.00 0.00 0.00 3.95 F
5463 5961 2.089980 GATTGCAGCAACAGAGGTGAT 58.910 47.619 10.85 0.00 39.26 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1218 1252 0.600255 AGACACGAGAAAACGCAGGG 60.600 55.000 0.00 0.00 36.70 4.45 R
1235 1269 1.380515 CTTCCCGGAGCTCTGGAGA 60.381 63.158 38.46 29.38 45.36 3.71 R
1361 1396 2.995258 CAAGCCAGCAATAACGCAATTT 59.005 40.909 0.00 0.00 0.00 1.82 R
2788 3029 1.368641 TCGATTTTCCAGTCATGCGG 58.631 50.000 0.00 0.00 0.00 5.69 R
3267 3524 3.007940 TCAGTATAGCAAACCACAGCTGT 59.992 43.478 15.25 15.25 41.97 4.40 R
3923 4180 3.932545 AGTGATATGCTCATCGAGGAC 57.067 47.619 0.00 0.00 35.97 3.85 R
4031 4422 5.413499 ACATTTTTGTTGATATCAGCCTGC 58.587 37.500 15.96 2.63 0.00 4.85 R
4625 5019 9.865321 CATCATTATGAAAGGAAAAGTCACATT 57.135 29.630 0.00 0.00 34.84 2.71 R
5515 6014 0.764369 AGTCCAAGGCAGGAGTGACA 60.764 55.000 5.64 0.00 39.85 3.58 R
7073 10177 0.034896 AACGGTGTCTGTCCATGTCC 59.965 55.000 0.00 0.00 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.991051 GCGGCGCCCTATGAGCTA 61.991 66.667 23.58 0.00 40.03 3.32
19 20 2.259818 CGGCGCCCTATGAGCTAG 59.740 66.667 23.46 0.00 40.03 3.42
20 21 2.659610 GGCGCCCTATGAGCTAGG 59.340 66.667 18.11 0.00 45.96 3.02
28 29 3.085952 CCTATGAGCTAGGGAGAGAGG 57.914 57.143 0.00 0.00 43.08 3.69
29 30 2.291540 CCTATGAGCTAGGGAGAGAGGG 60.292 59.091 0.00 0.00 43.08 4.30
30 31 1.240527 ATGAGCTAGGGAGAGAGGGT 58.759 55.000 0.00 0.00 0.00 4.34
31 32 1.908643 TGAGCTAGGGAGAGAGGGTA 58.091 55.000 0.00 0.00 0.00 3.69
32 33 1.777878 TGAGCTAGGGAGAGAGGGTAG 59.222 57.143 0.00 0.00 0.00 3.18
33 34 1.074889 GAGCTAGGGAGAGAGGGTAGG 59.925 61.905 0.00 0.00 0.00 3.18
34 35 0.854908 GCTAGGGAGAGAGGGTAGGT 59.145 60.000 0.00 0.00 0.00 3.08
35 36 1.479757 GCTAGGGAGAGAGGGTAGGTG 60.480 61.905 0.00 0.00 0.00 4.00
36 37 1.854280 CTAGGGAGAGAGGGTAGGTGT 59.146 57.143 0.00 0.00 0.00 4.16
37 38 1.094269 AGGGAGAGAGGGTAGGTGTT 58.906 55.000 0.00 0.00 0.00 3.32
38 39 1.196012 GGGAGAGAGGGTAGGTGTTG 58.804 60.000 0.00 0.00 0.00 3.33
39 40 0.537653 GGAGAGAGGGTAGGTGTTGC 59.462 60.000 0.00 0.00 0.00 4.17
40 41 0.537653 GAGAGAGGGTAGGTGTTGCC 59.462 60.000 0.00 0.00 37.58 4.52
45 46 4.893764 GAGAGGGTAGGTGTTGCCTTCTT 61.894 52.174 0.00 0.00 45.85 2.52
46 47 6.329530 GAGAGGGTAGGTGTTGCCTTCTTT 62.330 50.000 0.00 0.00 45.85 2.52
52 53 1.269723 GGTGTTGCCTTCTTTGGTAGC 59.730 52.381 0.00 0.00 0.00 3.58
53 54 1.069227 GTGTTGCCTTCTTTGGTAGCG 60.069 52.381 0.00 0.00 0.00 4.26
54 55 0.521735 GTTGCCTTCTTTGGTAGCGG 59.478 55.000 0.00 0.00 0.00 5.52
55 56 0.398696 TTGCCTTCTTTGGTAGCGGA 59.601 50.000 0.00 0.00 0.00 5.54
56 57 0.036388 TGCCTTCTTTGGTAGCGGAG 60.036 55.000 0.00 0.00 0.00 4.63
57 58 0.249398 GCCTTCTTTGGTAGCGGAGA 59.751 55.000 0.00 0.00 0.00 3.71
58 59 2.007547 GCCTTCTTTGGTAGCGGAGAC 61.008 57.143 0.00 0.00 0.00 3.36
70 71 2.202756 GGAGACGGATGGCGTGAC 60.203 66.667 0.00 0.00 0.00 3.67
71 72 2.579787 GAGACGGATGGCGTGACG 60.580 66.667 0.00 0.00 0.00 4.35
89 90 4.208632 CCGATGTGGCCTTGTCTC 57.791 61.111 3.32 0.00 0.00 3.36
90 91 1.450312 CCGATGTGGCCTTGTCTCC 60.450 63.158 3.32 0.00 0.00 3.71
91 92 1.599047 CGATGTGGCCTTGTCTCCT 59.401 57.895 3.32 0.00 0.00 3.69
92 93 0.460987 CGATGTGGCCTTGTCTCCTC 60.461 60.000 3.32 0.00 0.00 3.71
93 94 0.908198 GATGTGGCCTTGTCTCCTCT 59.092 55.000 3.32 0.00 0.00 3.69
94 95 1.280421 GATGTGGCCTTGTCTCCTCTT 59.720 52.381 3.32 0.00 0.00 2.85
95 96 1.140312 TGTGGCCTTGTCTCCTCTTT 58.860 50.000 3.32 0.00 0.00 2.52
96 97 1.202806 TGTGGCCTTGTCTCCTCTTTG 60.203 52.381 3.32 0.00 0.00 2.77
97 98 1.072331 GTGGCCTTGTCTCCTCTTTGA 59.928 52.381 3.32 0.00 0.00 2.69
98 99 1.072331 TGGCCTTGTCTCCTCTTTGAC 59.928 52.381 3.32 0.00 0.00 3.18
99 100 1.072331 GGCCTTGTCTCCTCTTTGACA 59.928 52.381 0.00 0.00 40.86 3.58
100 101 2.487265 GGCCTTGTCTCCTCTTTGACAA 60.487 50.000 0.00 8.04 46.73 3.18
105 106 4.179926 TGTCTCCTCTTTGACAAGATCG 57.820 45.455 0.00 0.00 39.82 3.69
106 107 2.926838 GTCTCCTCTTTGACAAGATCGC 59.073 50.000 0.00 0.00 38.42 4.58
107 108 1.923204 CTCCTCTTTGACAAGATCGCG 59.077 52.381 0.00 0.00 38.42 5.87
108 109 1.002366 CCTCTTTGACAAGATCGCGG 58.998 55.000 6.13 0.00 38.42 6.46
109 110 0.371645 CTCTTTGACAAGATCGCGGC 59.628 55.000 6.13 0.00 38.42 6.53
110 111 1.059369 CTTTGACAAGATCGCGGCG 59.941 57.895 17.70 17.70 30.57 6.46
111 112 1.626654 CTTTGACAAGATCGCGGCGT 61.627 55.000 22.90 9.76 30.57 5.68
112 113 1.623081 TTTGACAAGATCGCGGCGTC 61.623 55.000 22.90 17.86 0.00 5.19
113 114 2.202623 GACAAGATCGCGGCGTCT 60.203 61.111 22.90 19.72 0.00 4.18
114 115 2.202623 ACAAGATCGCGGCGTCTC 60.203 61.111 22.90 18.90 0.00 3.36
115 116 2.956964 CAAGATCGCGGCGTCTCC 60.957 66.667 22.90 9.74 0.00 3.71
116 117 3.141488 AAGATCGCGGCGTCTCCT 61.141 61.111 22.90 11.78 0.00 3.69
117 118 3.127352 AAGATCGCGGCGTCTCCTC 62.127 63.158 22.90 11.88 0.00 3.71
118 119 3.587933 GATCGCGGCGTCTCCTCT 61.588 66.667 22.90 0.00 0.00 3.69
119 120 3.127352 GATCGCGGCGTCTCCTCTT 62.127 63.158 22.90 0.00 0.00 2.85
120 121 2.615262 GATCGCGGCGTCTCCTCTTT 62.615 60.000 22.90 0.00 0.00 2.52
121 122 2.890847 ATCGCGGCGTCTCCTCTTTG 62.891 60.000 22.90 0.00 0.00 2.77
122 123 2.261671 GCGGCGTCTCCTCTTTGA 59.738 61.111 9.37 0.00 0.00 2.69
123 124 2.095252 GCGGCGTCTCCTCTTTGAC 61.095 63.158 9.37 0.00 0.00 3.18
124 125 1.289066 CGGCGTCTCCTCTTTGACA 59.711 57.895 0.00 0.00 33.18 3.58
125 126 0.319555 CGGCGTCTCCTCTTTGACAA 60.320 55.000 0.00 0.00 33.18 3.18
126 127 1.433534 GGCGTCTCCTCTTTGACAAG 58.566 55.000 0.00 0.00 33.18 3.16
127 128 1.000955 GGCGTCTCCTCTTTGACAAGA 59.999 52.381 0.00 0.00 36.62 3.02
128 129 2.354203 GGCGTCTCCTCTTTGACAAGAT 60.354 50.000 0.00 0.00 38.42 2.40
129 130 2.926838 GCGTCTCCTCTTTGACAAGATC 59.073 50.000 0.00 0.00 38.42 2.75
130 131 3.175152 CGTCTCCTCTTTGACAAGATCG 58.825 50.000 0.00 0.00 38.42 3.69
131 132 2.926838 GTCTCCTCTTTGACAAGATCGC 59.073 50.000 0.00 0.00 38.42 4.58
132 133 1.923204 CTCCTCTTTGACAAGATCGCG 59.077 52.381 0.00 0.00 38.42 5.87
133 134 1.002366 CCTCTTTGACAAGATCGCGG 58.998 55.000 6.13 0.00 38.42 6.46
134 135 0.371645 CTCTTTGACAAGATCGCGGC 59.628 55.000 6.13 0.00 38.42 6.53
135 136 1.059369 CTTTGACAAGATCGCGGCG 59.941 57.895 17.70 17.70 30.57 6.46
136 137 1.626654 CTTTGACAAGATCGCGGCGT 61.627 55.000 22.90 9.76 30.57 5.68
137 138 1.623081 TTTGACAAGATCGCGGCGTC 61.623 55.000 22.90 17.86 0.00 5.19
138 139 2.202623 GACAAGATCGCGGCGTCT 60.203 61.111 22.90 19.72 0.00 4.18
139 140 2.202623 ACAAGATCGCGGCGTCTC 60.203 61.111 22.90 18.90 0.00 3.36
140 141 2.956964 CAAGATCGCGGCGTCTCC 60.957 66.667 22.90 9.74 0.00 3.71
141 142 3.141488 AAGATCGCGGCGTCTCCT 61.141 61.111 22.90 11.78 0.00 3.69
142 143 3.127352 AAGATCGCGGCGTCTCCTC 62.127 63.158 22.90 11.88 0.00 3.71
143 144 3.587933 GATCGCGGCGTCTCCTCT 61.588 66.667 22.90 0.00 0.00 3.69
144 145 3.127352 GATCGCGGCGTCTCCTCTT 62.127 63.158 22.90 0.00 0.00 2.85
145 146 2.615262 GATCGCGGCGTCTCCTCTTT 62.615 60.000 22.90 0.00 0.00 2.52
146 147 2.890847 ATCGCGGCGTCTCCTCTTTG 62.891 60.000 22.90 0.00 0.00 2.77
147 148 2.261671 GCGGCGTCTCCTCTTTGA 59.738 61.111 9.37 0.00 0.00 2.69
148 149 1.153549 GCGGCGTCTCCTCTTTGAT 60.154 57.895 9.37 0.00 0.00 2.57
149 150 1.424493 GCGGCGTCTCCTCTTTGATG 61.424 60.000 9.37 0.00 0.00 3.07
150 151 0.173481 CGGCGTCTCCTCTTTGATGA 59.827 55.000 0.00 0.00 0.00 2.92
151 152 1.646189 GGCGTCTCCTCTTTGATGAC 58.354 55.000 0.00 0.00 0.00 3.06
152 153 1.066858 GGCGTCTCCTCTTTGATGACA 60.067 52.381 0.00 0.00 0.00 3.58
153 154 2.266554 GCGTCTCCTCTTTGATGACAG 58.733 52.381 0.00 0.00 0.00 3.51
154 155 2.094494 GCGTCTCCTCTTTGATGACAGA 60.094 50.000 0.00 0.00 0.00 3.41
155 156 3.430098 GCGTCTCCTCTTTGATGACAGAT 60.430 47.826 0.00 0.00 0.00 2.90
156 157 4.111198 CGTCTCCTCTTTGATGACAGATG 58.889 47.826 0.00 0.00 0.00 2.90
157 158 4.440880 GTCTCCTCTTTGATGACAGATGG 58.559 47.826 0.00 0.00 0.00 3.51
158 159 3.453717 TCTCCTCTTTGATGACAGATGGG 59.546 47.826 0.00 0.00 0.00 4.00
159 160 3.184628 TCCTCTTTGATGACAGATGGGT 58.815 45.455 0.00 0.00 0.00 4.51
160 161 3.588842 TCCTCTTTGATGACAGATGGGTT 59.411 43.478 0.00 0.00 0.00 4.11
161 162 4.043310 TCCTCTTTGATGACAGATGGGTTT 59.957 41.667 0.00 0.00 0.00 3.27
162 163 4.397417 CCTCTTTGATGACAGATGGGTTTC 59.603 45.833 0.00 0.00 0.00 2.78
168 169 0.902531 GACAGATGGGTTTCCTCCGA 59.097 55.000 0.00 0.00 0.00 4.55
215 216 1.002366 CCTCTTTGACAAGATCGCGG 58.998 55.000 6.13 0.00 38.42 6.46
240 241 2.582498 CGAAGGCATCGTCCGGTC 60.582 66.667 0.00 0.00 46.52 4.79
241 242 2.577059 GAAGGCATCGTCCGGTCA 59.423 61.111 0.00 0.00 0.00 4.02
242 243 1.079405 GAAGGCATCGTCCGGTCAA 60.079 57.895 0.00 0.00 0.00 3.18
243 244 1.079127 AAGGCATCGTCCGGTCAAG 60.079 57.895 0.00 0.00 0.00 3.02
244 245 3.195698 GGCATCGTCCGGTCAAGC 61.196 66.667 0.00 0.00 0.00 4.01
245 246 2.125512 GCATCGTCCGGTCAAGCT 60.126 61.111 0.00 0.00 0.00 3.74
246 247 1.741770 GCATCGTCCGGTCAAGCTT 60.742 57.895 0.00 0.00 0.00 3.74
247 248 1.696832 GCATCGTCCGGTCAAGCTTC 61.697 60.000 0.00 0.00 0.00 3.86
248 249 1.084370 CATCGTCCGGTCAAGCTTCC 61.084 60.000 0.00 0.00 0.00 3.46
249 250 2.558554 ATCGTCCGGTCAAGCTTCCG 62.559 60.000 17.40 17.40 45.42 4.30
255 256 2.533318 GGTCAAGCTTCCGAGTGTG 58.467 57.895 0.00 0.00 0.00 3.82
256 257 0.951040 GGTCAAGCTTCCGAGTGTGG 60.951 60.000 0.00 0.00 0.00 4.17
257 258 0.951040 GTCAAGCTTCCGAGTGTGGG 60.951 60.000 0.00 0.00 0.00 4.61
258 259 2.032681 AAGCTTCCGAGTGTGGGC 59.967 61.111 0.00 0.00 0.00 5.36
259 260 2.520536 AAGCTTCCGAGTGTGGGCT 61.521 57.895 0.00 0.00 0.00 5.19
260 261 2.032681 GCTTCCGAGTGTGGGCTT 59.967 61.111 0.00 0.00 0.00 4.35
261 262 1.600916 GCTTCCGAGTGTGGGCTTT 60.601 57.895 0.00 0.00 0.00 3.51
262 263 1.856265 GCTTCCGAGTGTGGGCTTTG 61.856 60.000 0.00 0.00 0.00 2.77
263 264 1.856265 CTTCCGAGTGTGGGCTTTGC 61.856 60.000 0.00 0.00 0.00 3.68
264 265 3.726517 CCGAGTGTGGGCTTTGCG 61.727 66.667 0.00 0.00 0.00 4.85
265 266 2.664851 CGAGTGTGGGCTTTGCGA 60.665 61.111 0.00 0.00 0.00 5.10
266 267 2.034879 CGAGTGTGGGCTTTGCGAT 61.035 57.895 0.00 0.00 0.00 4.58
267 268 1.503542 GAGTGTGGGCTTTGCGATG 59.496 57.895 0.00 0.00 0.00 3.84
268 269 1.926511 GAGTGTGGGCTTTGCGATGG 61.927 60.000 0.00 0.00 0.00 3.51
269 270 3.372730 TGTGGGCTTTGCGATGGC 61.373 61.111 4.90 4.90 40.52 4.40
272 273 2.124320 GGGCTTTGCGATGGCCTA 60.124 61.111 21.60 0.00 44.70 3.93
273 274 2.481471 GGGCTTTGCGATGGCCTAC 61.481 63.158 21.60 0.00 44.70 3.18
274 275 1.452108 GGCTTTGCGATGGCCTACT 60.452 57.895 3.32 0.00 42.31 2.57
275 276 1.718757 GGCTTTGCGATGGCCTACTG 61.719 60.000 3.32 0.00 42.31 2.74
276 277 1.718757 GCTTTGCGATGGCCTACTGG 61.719 60.000 3.32 0.00 38.85 4.00
277 278 0.392998 CTTTGCGATGGCCTACTGGT 60.393 55.000 3.32 0.00 38.85 4.00
278 279 0.037590 TTTGCGATGGCCTACTGGTT 59.962 50.000 3.32 0.00 38.85 3.67
279 280 0.676466 TTGCGATGGCCTACTGGTTG 60.676 55.000 3.32 0.00 38.85 3.77
280 281 1.819632 GCGATGGCCTACTGGTTGG 60.820 63.158 3.32 0.00 35.27 3.77
288 289 3.669251 GCCTACTGGTTGGCTCTATAG 57.331 52.381 16.49 0.00 45.79 1.31
289 290 2.966516 GCCTACTGGTTGGCTCTATAGT 59.033 50.000 16.49 0.00 45.79 2.12
290 291 3.388350 GCCTACTGGTTGGCTCTATAGTT 59.612 47.826 16.49 0.00 45.79 2.24
291 292 4.141688 GCCTACTGGTTGGCTCTATAGTTT 60.142 45.833 16.49 0.00 45.79 2.66
292 293 5.602628 CCTACTGGTTGGCTCTATAGTTTC 58.397 45.833 0.00 0.00 0.00 2.78
293 294 4.124851 ACTGGTTGGCTCTATAGTTTCG 57.875 45.455 0.00 0.00 0.00 3.46
294 295 3.514309 ACTGGTTGGCTCTATAGTTTCGT 59.486 43.478 0.00 0.00 0.00 3.85
295 296 3.857052 TGGTTGGCTCTATAGTTTCGTG 58.143 45.455 0.00 0.00 0.00 4.35
296 297 3.259876 TGGTTGGCTCTATAGTTTCGTGT 59.740 43.478 0.00 0.00 0.00 4.49
318 319 3.951775 TCCTTTTGCTGTTTTGTGTGT 57.048 38.095 0.00 0.00 0.00 3.72
360 362 3.513438 GCGTGTGTTGTGTGGCCA 61.513 61.111 0.00 0.00 0.00 5.36
361 363 2.844451 GCGTGTGTTGTGTGGCCAT 61.844 57.895 9.72 0.00 0.00 4.40
367 369 0.537143 TGTTGTGTGGCCATCTGGTC 60.537 55.000 9.72 0.00 41.09 4.02
482 484 4.319177 GTGTTCTTACTGGCAGAAGTGAT 58.681 43.478 23.66 0.00 30.72 3.06
504 507 1.196127 GCCGTACTGTTTAACACTGCC 59.804 52.381 0.00 0.00 0.00 4.85
509 512 3.012934 ACTGTTTAACACTGCCCTGTT 57.987 42.857 0.00 2.05 38.03 3.16
555 566 3.628646 GAGGTGCGCCAATGGAGGT 62.629 63.158 20.59 0.00 37.19 3.85
704 722 2.406002 GACCCACCATCCACCACGTT 62.406 60.000 0.00 0.00 0.00 3.99
716 734 2.258013 CCACGTTCAACCGCCACAT 61.258 57.895 0.00 0.00 0.00 3.21
725 743 3.151710 CCGCCACATACCTCCCGA 61.152 66.667 0.00 0.00 0.00 5.14
755 773 2.774351 CCTCCCATCCCACCTCCC 60.774 72.222 0.00 0.00 0.00 4.30
756 774 3.164269 CTCCCATCCCACCTCCCG 61.164 72.222 0.00 0.00 0.00 5.14
892 915 3.465403 CTCTCCCCACTCCGGCAG 61.465 72.222 0.00 0.00 0.00 4.85
893 916 3.965026 CTCTCCCCACTCCGGCAGA 62.965 68.421 0.00 0.00 0.00 4.26
971 1004 4.348684 TTGGAAGGAGCCAAGGGA 57.651 55.556 0.00 0.00 42.75 4.20
973 1006 1.500783 TTGGAAGGAGCCAAGGGAGG 61.501 60.000 0.00 0.00 42.75 4.30
974 1007 2.684499 GGAAGGAGCCAAGGGAGGG 61.684 68.421 0.00 0.00 0.00 4.30
975 1008 1.616628 GAAGGAGCCAAGGGAGGGA 60.617 63.158 0.00 0.00 0.00 4.20
976 1009 1.617839 AAGGAGCCAAGGGAGGGAG 60.618 63.158 0.00 0.00 0.00 4.30
977 1010 3.093172 GGAGCCAAGGGAGGGAGG 61.093 72.222 0.00 0.00 0.00 4.30
982 1015 4.168291 CAAGGGAGGGAGGCGCTC 62.168 72.222 7.64 2.45 41.74 5.03
1235 1269 0.179067 TTCCCTGCGTTTTCTCGTGT 60.179 50.000 0.00 0.00 0.00 4.49
1244 1278 2.062519 GTTTTCTCGTGTCTCCAGAGC 58.937 52.381 0.00 0.00 32.42 4.09
1361 1396 0.622136 TAGTCGGTCCTGAGCCACTA 59.378 55.000 0.60 0.60 0.00 2.74
1375 1410 3.769536 AGCCACTAAATTGCGTTATTGC 58.230 40.909 0.00 0.00 0.00 3.56
1498 1533 1.732809 GCTTCTCCGACTTTGGTAAGC 59.267 52.381 8.61 8.61 39.79 3.09
1548 1587 3.199946 AGCCCAGCAGCTTGTATAGTTTA 59.800 43.478 0.00 0.00 41.41 2.01
1592 1631 3.016031 TGTTGTCAAAAGCTGCTCTCAA 58.984 40.909 1.00 2.07 0.00 3.02
1631 1670 8.342634 TCTTCAGTTCAAATTGTTAGTTAGTGC 58.657 33.333 0.00 0.00 0.00 4.40
1635 1674 7.915397 CAGTTCAAATTGTTAGTTAGTGCTGTT 59.085 33.333 0.00 0.00 0.00 3.16
1650 1689 3.190118 GTGCTGTTAAAAGCTGCTCTCAT 59.810 43.478 18.41 0.00 43.90 2.90
1669 1708 5.883115 TCTCATTTGCAATTATAACCGACCA 59.117 36.000 0.00 0.00 0.00 4.02
1677 1716 5.533482 CAATTATAACCGACCAGAGAGAGG 58.467 45.833 0.00 0.00 0.00 3.69
1694 1735 7.437862 CAGAGAGAGGAACATATAAGAAAGCAC 59.562 40.741 0.00 0.00 0.00 4.40
1770 1813 2.991250 AGCATAAACACTGCCCTACTG 58.009 47.619 0.00 0.00 40.56 2.74
1800 1844 5.063817 GCCACTTTTGCATCAAAATATCCAC 59.936 40.000 5.34 0.00 41.53 4.02
1889 2096 3.769739 TGGTGCACTGAACTACATCTT 57.230 42.857 17.98 0.00 0.00 2.40
1955 2162 2.872245 CACCGCCCTACTATCAAATGTG 59.128 50.000 0.00 0.00 0.00 3.21
2048 2260 7.072030 GCATGATCAAATATCTTTGTACGGTC 58.928 38.462 0.00 0.00 42.02 4.79
2049 2261 6.822073 TGATCAAATATCTTTGTACGGTCG 57.178 37.500 0.00 0.00 42.02 4.79
2102 2314 7.770897 CCTACAACTCAGAAGTAATATTTGCCT 59.229 37.037 0.00 0.00 33.48 4.75
2211 2423 7.843490 TCTCACTAGTGTAATATTTGCCAAC 57.157 36.000 21.99 0.00 0.00 3.77
2224 2436 2.700722 TGCCAACGACCAAGCATATA 57.299 45.000 0.00 0.00 0.00 0.86
2225 2437 3.207265 TGCCAACGACCAAGCATATAT 57.793 42.857 0.00 0.00 0.00 0.86
2226 2438 3.550820 TGCCAACGACCAAGCATATATT 58.449 40.909 0.00 0.00 0.00 1.28
2227 2439 3.951037 TGCCAACGACCAAGCATATATTT 59.049 39.130 0.00 0.00 0.00 1.40
2228 2440 4.202000 TGCCAACGACCAAGCATATATTTG 60.202 41.667 0.00 0.00 0.00 2.32
2236 2448 5.356882 CCAAGCATATATTTGGTGGTACG 57.643 43.478 7.71 0.00 39.18 3.67
2237 2449 5.060506 CCAAGCATATATTTGGTGGTACGA 58.939 41.667 7.71 0.00 39.18 3.43
2238 2450 5.179368 CCAAGCATATATTTGGTGGTACGAG 59.821 44.000 7.71 0.00 39.18 4.18
2239 2451 5.546621 AGCATATATTTGGTGGTACGAGT 57.453 39.130 0.00 0.00 0.00 4.18
2240 2452 5.925509 AGCATATATTTGGTGGTACGAGTT 58.074 37.500 0.00 0.00 0.00 3.01
2241 2453 6.354130 AGCATATATTTGGTGGTACGAGTTT 58.646 36.000 0.00 0.00 0.00 2.66
2242 2454 6.482308 AGCATATATTTGGTGGTACGAGTTTC 59.518 38.462 0.00 0.00 0.00 2.78
2243 2455 6.259167 GCATATATTTGGTGGTACGAGTTTCA 59.741 38.462 0.00 0.00 0.00 2.69
2244 2456 7.041372 GCATATATTTGGTGGTACGAGTTTCAT 60.041 37.037 0.00 0.00 0.00 2.57
2245 2457 8.836413 CATATATTTGGTGGTACGAGTTTCATT 58.164 33.333 0.00 0.00 0.00 2.57
2246 2458 7.696992 ATATTTGGTGGTACGAGTTTCATTT 57.303 32.000 0.00 0.00 0.00 2.32
2247 2459 4.822036 TTGGTGGTACGAGTTTCATTTG 57.178 40.909 0.00 0.00 0.00 2.32
2438 2675 6.016693 TGCAGCAAACTTAGTTATTTGTAGCA 60.017 34.615 0.00 5.56 41.21 3.49
2461 2698 8.525316 AGCACTCAATCAAATGAATTACATTGA 58.475 29.630 0.00 8.31 46.90 2.57
2788 3029 5.876612 AAGAGATTGCTGATGAAACTGAC 57.123 39.130 0.00 0.00 0.00 3.51
3073 3330 4.517285 TGACACTTATTGATCTTCCTGGC 58.483 43.478 0.00 0.00 0.00 4.85
3122 3379 4.142609 TCCCTTATTGACTTAGCTGCTG 57.857 45.455 13.43 0.00 0.00 4.41
3246 3503 3.404899 TGAAAACATGGTCCGGACTTAC 58.595 45.455 32.52 17.67 0.00 2.34
3267 3524 9.275398 ACTTACGTTGACAAGGTAAAATAATCA 57.725 29.630 25.40 8.87 40.11 2.57
3417 3674 4.536765 GGCATATTTTTCTCCCTTCTGGA 58.463 43.478 0.00 0.00 42.41 3.86
3488 3745 7.050970 TGGTCTCTTGCTATATTTGTATCGT 57.949 36.000 0.00 0.00 0.00 3.73
3923 4180 4.337763 GTCTTGCAATTGCTATGAACTCG 58.662 43.478 29.37 9.88 42.66 4.18
3949 4340 6.040955 TCCTCGATGAGCATATCACTTAAACT 59.959 38.462 0.00 0.00 41.91 2.66
4031 4422 1.209127 GGGCATTGTCAACCGTTCG 59.791 57.895 0.00 0.00 0.00 3.95
4419 4813 8.885494 ACATAAAAGCTGAAAAGTAATTTGCA 57.115 26.923 0.00 0.00 0.00 4.08
4464 4858 3.765511 ACAGTGATGTTAATGGCAAGCAT 59.234 39.130 0.00 0.00 0.00 3.79
4477 4871 9.979897 TTAATGGCAAGCATATTCTATATTCCT 57.020 29.630 0.00 0.00 0.00 3.36
4625 5019 7.759489 AGATGTTCAACTAGCCATTTTGTAA 57.241 32.000 0.00 0.00 0.00 2.41
4657 5053 9.205513 ACTTTTCCTTTCATAATGATGCCTTAT 57.794 29.630 0.00 0.00 32.62 1.73
4672 5068 8.394971 TGATGCCTTATATGTTGATAAAGTGG 57.605 34.615 0.00 0.00 0.00 4.00
4673 5069 6.633500 TGCCTTATATGTTGATAAAGTGGC 57.367 37.500 0.00 0.00 33.68 5.01
4674 5070 6.125719 TGCCTTATATGTTGATAAAGTGGCA 58.874 36.000 0.00 0.00 37.60 4.92
4675 5071 6.605194 TGCCTTATATGTTGATAAAGTGGCAA 59.395 34.615 0.00 0.00 37.27 4.52
4752 5148 8.457238 AAGAATGCTTCTGATAATTTACCCTC 57.543 34.615 0.09 0.00 40.59 4.30
4753 5149 7.577303 AGAATGCTTCTGATAATTTACCCTCA 58.423 34.615 0.00 0.00 38.91 3.86
4756 5152 9.866655 AATGCTTCTGATAATTTACCCTCATTA 57.133 29.630 0.00 0.00 0.00 1.90
4858 5254 6.655003 AGCTTCCTTTCGATAAACATCTTTCA 59.345 34.615 0.00 0.00 0.00 2.69
5185 5581 4.207891 TGCTGGACTATGAGAAACTTCC 57.792 45.455 0.00 0.00 0.00 3.46
5186 5582 3.840666 TGCTGGACTATGAGAAACTTCCT 59.159 43.478 0.00 0.00 0.00 3.36
5231 5726 8.950210 CCATTATCTTGTCAAAGTACTGAACAT 58.050 33.333 0.00 0.00 34.78 2.71
5463 5961 2.089980 GATTGCAGCAACAGAGGTGAT 58.910 47.619 10.85 0.00 39.26 3.06
5467 5965 2.224499 TGCAGCAACAGAGGTGATTGTA 60.224 45.455 0.00 0.00 39.26 2.41
5515 6014 3.878237 ATGGATGAGTGATTGCCAGAT 57.122 42.857 0.00 0.00 31.23 2.90
5712 6211 4.422984 AGGCCAGTTACCTAACAGTAGAA 58.577 43.478 5.01 0.00 38.62 2.10
5844 6343 7.466804 TCAATCCTTTCAAGGTACTATTGGTT 58.533 34.615 13.74 0.00 46.54 3.67
5938 6441 8.912988 TGAATCAATTTTATATCCAGACAACCC 58.087 33.333 0.00 0.00 0.00 4.11
5992 6497 3.135530 AGGCCCTGTTTGCATTGTTTTAA 59.864 39.130 0.00 0.00 0.00 1.52
6039 6545 2.071778 TTTCTGCCTTCCAAACAGCT 57.928 45.000 0.00 0.00 0.00 4.24
6047 6573 1.270550 CTTCCAAACAGCTTGCGGATT 59.729 47.619 0.00 0.00 33.27 3.01
6078 6604 5.786401 ACTTCTTCAAAGCATCATCGTAC 57.214 39.130 0.00 0.00 0.00 3.67
6085 6611 4.994217 TCAAAGCATCATCGTACAGTTGAA 59.006 37.500 0.00 0.00 32.85 2.69
6087 6613 5.475273 AAGCATCATCGTACAGTTGAATG 57.525 39.130 0.00 0.76 32.85 2.67
6191 6718 2.163211 GAGACAGCAAAATGGAGGAAGC 59.837 50.000 0.00 0.00 0.00 3.86
6196 6723 3.507233 CAGCAAAATGGAGGAAGCAGTAA 59.493 43.478 0.00 0.00 0.00 2.24
6221 6748 9.479549 AATCAACCTTTGTTTAGGATCATGTAT 57.520 29.630 0.00 0.00 38.73 2.29
6224 6751 9.573133 CAACCTTTGTTTAGGATCATGTATTTC 57.427 33.333 0.00 0.00 38.73 2.17
6229 6756 5.295787 TGTTTAGGATCATGTATTTCGTGCC 59.704 40.000 0.00 0.00 33.44 5.01
6232 6759 3.069016 AGGATCATGTATTTCGTGCCGTA 59.931 43.478 0.00 0.00 33.44 4.02
6239 6766 3.432933 TGTATTTCGTGCCGTAAAACCTC 59.567 43.478 0.00 0.00 0.00 3.85
6242 6769 0.320073 TCGTGCCGTAAAACCTCAGG 60.320 55.000 0.00 0.00 0.00 3.86
6260 6787 1.750778 AGGGCTTGGAATAATTGCACG 59.249 47.619 0.00 0.00 31.59 5.34
6289 6816 2.555199 GACAAACTCGCCTATGCATCT 58.445 47.619 0.19 0.00 37.32 2.90
6296 6823 3.562973 ACTCGCCTATGCATCTTTGATTG 59.437 43.478 0.19 0.00 37.32 2.67
6309 6836 9.665719 TGCATCTTTGATTGTAGTGTAGATAAA 57.334 29.630 0.00 0.00 0.00 1.40
6345 6872 6.045698 ACAGAGTCAATCACTACGTATACG 57.954 41.667 23.24 23.24 39.66 3.06
6415 9515 1.758280 AGTATTAATGACGCCGTCCCA 59.242 47.619 15.60 0.00 0.00 4.37
6418 9518 1.374560 TTAATGACGCCGTCCCATTG 58.625 50.000 15.60 0.00 33.21 2.82
6429 9529 2.617788 CCGTCCCATTGTTTCAGGATCA 60.618 50.000 0.00 0.00 0.00 2.92
6586 9686 8.324163 AGAGGTATGTTTTTGCTAACTACTTG 57.676 34.615 0.00 0.00 0.00 3.16
6651 9752 6.493166 TGATCTTCCACTTCAATTTACCCAT 58.507 36.000 0.00 0.00 0.00 4.00
6692 9793 7.852454 GCAAATTGAAAATTTTCACCAGACTTC 59.148 33.333 28.78 12.34 45.99 3.01
6700 9801 6.849588 ATTTTCACCAGACTTCAATTTTGC 57.150 33.333 0.00 0.00 0.00 3.68
6910 10014 1.185618 TGGAGCTGTACAAGTCCGCT 61.186 55.000 15.27 11.40 32.01 5.52
7057 10161 1.334149 GCTTTCTTGCCGAGTGTTGTC 60.334 52.381 0.00 0.00 0.00 3.18
7101 10205 2.354821 GACAGACACCGTTGCTTCTTTT 59.645 45.455 0.00 0.00 0.00 2.27
7103 10207 1.676006 AGACACCGTTGCTTCTTTTGG 59.324 47.619 0.00 0.00 0.00 3.28
7104 10208 0.102300 ACACCGTTGCTTCTTTTGGC 59.898 50.000 0.00 0.00 0.00 4.52
7105 10209 0.597377 CACCGTTGCTTCTTTTGGCC 60.597 55.000 0.00 0.00 0.00 5.36
7106 10210 1.040339 ACCGTTGCTTCTTTTGGCCA 61.040 50.000 0.00 0.00 0.00 5.36
7107 10211 0.103937 CCGTTGCTTCTTTTGGCCAA 59.896 50.000 16.05 16.05 0.00 4.52
7138 10242 3.258372 TGGCCTCCTGTATGATTCGTATC 59.742 47.826 3.32 0.00 0.00 2.24
7139 10243 3.502920 GCCTCCTGTATGATTCGTATCG 58.497 50.000 0.00 0.00 33.23 2.92
7140 10244 3.190744 GCCTCCTGTATGATTCGTATCGA 59.809 47.826 0.00 0.00 33.23 3.59
7141 10245 4.142359 GCCTCCTGTATGATTCGTATCGAT 60.142 45.833 2.16 2.16 35.23 3.59
7142 10246 5.622460 GCCTCCTGTATGATTCGTATCGATT 60.622 44.000 1.71 0.00 35.23 3.34
7145 10249 7.645735 CCTCCTGTATGATTCGTATCGATTATG 59.354 40.741 1.71 0.00 35.23 1.90
7185 10289 8.525316 TGTATTCTTTGTTCAATTGATGATGCT 58.475 29.630 9.40 0.00 38.03 3.79
7186 10290 9.362539 GTATTCTTTGTTCAATTGATGATGCTT 57.637 29.630 9.40 0.00 38.03 3.91
7204 10313 2.675348 GCTTTCTCACGATCCTCCAAAG 59.325 50.000 0.00 0.00 0.00 2.77
7207 10316 3.594603 TCTCACGATCCTCCAAAGTTC 57.405 47.619 0.00 0.00 0.00 3.01
7208 10317 2.233922 TCTCACGATCCTCCAAAGTTCC 59.766 50.000 0.00 0.00 0.00 3.62
7209 10318 1.974957 TCACGATCCTCCAAAGTTCCA 59.025 47.619 0.00 0.00 0.00 3.53
7212 10321 1.672881 CGATCCTCCAAAGTTCCATGC 59.327 52.381 0.00 0.00 0.00 4.06
7213 10322 1.672881 GATCCTCCAAAGTTCCATGCG 59.327 52.381 0.00 0.00 0.00 4.73
7215 10324 1.626321 TCCTCCAAAGTTCCATGCGTA 59.374 47.619 0.00 0.00 0.00 4.42
7222 10331 4.096231 CCAAAGTTCCATGCGTATTCATCA 59.904 41.667 0.00 0.00 0.00 3.07
7223 10332 5.221106 CCAAAGTTCCATGCGTATTCATCAT 60.221 40.000 0.00 0.00 0.00 2.45
7227 10336 5.824624 AGTTCCATGCGTATTCATCATCTTT 59.175 36.000 0.00 0.00 0.00 2.52
7228 10337 6.319658 AGTTCCATGCGTATTCATCATCTTTT 59.680 34.615 0.00 0.00 0.00 2.27
7229 10338 6.698008 TCCATGCGTATTCATCATCTTTTT 57.302 33.333 0.00 0.00 0.00 1.94
7231 10340 6.318396 TCCATGCGTATTCATCATCTTTTTCA 59.682 34.615 0.00 0.00 0.00 2.69
7232 10341 7.013559 TCCATGCGTATTCATCATCTTTTTCAT 59.986 33.333 0.00 0.00 0.00 2.57
7242 10421 6.605995 TCATCATCTTTTTCATGCCTTGATCT 59.394 34.615 0.00 0.00 33.34 2.75
7249 10428 4.994907 TTCATGCCTTGATCTCCAATTG 57.005 40.909 0.00 0.00 33.34 2.32
7253 10432 4.038271 TGCCTTGATCTCCAATTGAACT 57.962 40.909 7.12 0.00 33.68 3.01
7279 10458 3.565482 TGGTCACAAACAGCAGAAGATTC 59.435 43.478 0.00 0.00 0.00 2.52
7284 10463 4.736793 CACAAACAGCAGAAGATTCACAAC 59.263 41.667 0.00 0.00 0.00 3.32
7286 10465 3.498774 ACAGCAGAAGATTCACAACCT 57.501 42.857 0.00 0.00 0.00 3.50
7287 10466 3.144506 ACAGCAGAAGATTCACAACCTG 58.855 45.455 0.00 0.00 0.00 4.00
7288 10467 3.144506 CAGCAGAAGATTCACAACCTGT 58.855 45.455 0.00 0.00 0.00 4.00
7289 10468 3.188048 CAGCAGAAGATTCACAACCTGTC 59.812 47.826 0.00 0.00 0.00 3.51
7290 10469 3.072184 AGCAGAAGATTCACAACCTGTCT 59.928 43.478 0.00 0.00 0.00 3.41
7292 10471 4.390297 GCAGAAGATTCACAACCTGTCTAC 59.610 45.833 0.00 0.00 0.00 2.59
7295 10474 5.305644 AGAAGATTCACAACCTGTCTACAGT 59.694 40.000 9.17 0.00 42.27 3.55
7296 10475 6.493802 AGAAGATTCACAACCTGTCTACAGTA 59.506 38.462 9.17 0.00 42.27 2.74
7297 10476 6.026947 AGATTCACAACCTGTCTACAGTAC 57.973 41.667 9.17 0.00 42.27 2.73
7299 10478 5.601583 TTCACAACCTGTCTACAGTACAA 57.398 39.130 9.17 0.00 42.27 2.41
7300 10479 5.801531 TCACAACCTGTCTACAGTACAAT 57.198 39.130 9.17 0.00 42.27 2.71
7303 10482 6.041637 TCACAACCTGTCTACAGTACAATTCT 59.958 38.462 9.17 0.00 42.27 2.40
7304 10483 7.231925 TCACAACCTGTCTACAGTACAATTCTA 59.768 37.037 9.17 0.00 42.27 2.10
7368 10547 2.243810 GGCAGATCCTTCTCGAGGTAT 58.756 52.381 13.56 1.00 46.39 2.73
7411 10590 3.103911 CCTTGACCACGTCGACGC 61.104 66.667 35.92 20.72 44.43 5.19
7412 10591 3.458579 CTTGACCACGTCGACGCG 61.459 66.667 35.92 27.39 44.43 6.01
7516 10695 1.081242 CACGCACAACAAGGCATCC 60.081 57.895 0.00 0.00 0.00 3.51
7532 10711 2.034558 GCATCCATCCGTAACCAAATGG 59.965 50.000 0.00 0.00 40.05 3.16
7533 10712 2.428544 TCCATCCGTAACCAAATGGG 57.571 50.000 4.17 0.00 39.33 4.00
7535 10714 1.684869 CCATCCGTAACCAAATGGGCT 60.685 52.381 4.17 0.00 42.05 5.19
7538 10717 1.629353 TCCGTAACCAAATGGGCTACA 59.371 47.619 4.17 0.00 42.05 2.74
7555 10734 3.927142 GCTACATGTAGAAGAAGCAACGT 59.073 43.478 32.39 0.00 35.21 3.99
7574 10753 3.792047 CATCCGTGTGCGCTGGTG 61.792 66.667 9.73 3.33 36.67 4.17
7609 10913 1.738099 CCTTGAAGACGAGCACGGG 60.738 63.158 8.74 0.00 44.46 5.28
7724 11028 0.107800 CGTACTCCTCCTCGTCCTCA 60.108 60.000 0.00 0.00 0.00 3.86
7837 11144 4.519612 TGGCCTTGGCACAGCACA 62.520 61.111 14.04 0.00 42.39 4.57
7857 11164 2.358247 GGCGGTGGTGTTGACGAT 60.358 61.111 0.00 0.00 0.00 3.73
7924 11231 2.126734 GTGCAACGCCATGCTCAC 60.127 61.111 9.49 0.00 46.54 3.51
7926 11233 4.465512 GCAACGCCATGCTCACGG 62.466 66.667 1.30 0.00 43.06 4.94
7933 11240 2.046988 CATGCTCACGGTGCTGGA 60.047 61.111 2.51 0.43 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.923563 CTAGCTCATAGGGCGCCGC 62.924 68.421 22.54 17.30 34.52 6.53
2 3 2.259818 CTAGCTCATAGGGCGCCG 59.740 66.667 22.54 6.52 34.52 6.46
3 4 2.659610 CCTAGCTCATAGGGCGCC 59.340 66.667 21.18 21.18 46.63 6.53
9 10 2.378547 ACCCTCTCTCCCTAGCTCATAG 59.621 54.545 0.00 0.00 0.00 2.23
10 11 2.434067 ACCCTCTCTCCCTAGCTCATA 58.566 52.381 0.00 0.00 0.00 2.15
11 12 1.240527 ACCCTCTCTCCCTAGCTCAT 58.759 55.000 0.00 0.00 0.00 2.90
12 13 1.777878 CTACCCTCTCTCCCTAGCTCA 59.222 57.143 0.00 0.00 0.00 4.26
13 14 1.074889 CCTACCCTCTCTCCCTAGCTC 59.925 61.905 0.00 0.00 0.00 4.09
14 15 1.154430 CCTACCCTCTCTCCCTAGCT 58.846 60.000 0.00 0.00 0.00 3.32
15 16 0.854908 ACCTACCCTCTCTCCCTAGC 59.145 60.000 0.00 0.00 0.00 3.42
16 17 1.854280 ACACCTACCCTCTCTCCCTAG 59.146 57.143 0.00 0.00 0.00 3.02
17 18 1.997340 ACACCTACCCTCTCTCCCTA 58.003 55.000 0.00 0.00 0.00 3.53
18 19 1.094269 AACACCTACCCTCTCTCCCT 58.906 55.000 0.00 0.00 0.00 4.20
19 20 1.196012 CAACACCTACCCTCTCTCCC 58.804 60.000 0.00 0.00 0.00 4.30
20 21 0.537653 GCAACACCTACCCTCTCTCC 59.462 60.000 0.00 0.00 0.00 3.71
21 22 0.537653 GGCAACACCTACCCTCTCTC 59.462 60.000 0.00 0.00 34.51 3.20
22 23 2.685202 GGCAACACCTACCCTCTCT 58.315 57.895 0.00 0.00 34.51 3.10
32 33 1.269723 GCTACCAAAGAAGGCAACACC 59.730 52.381 0.00 0.00 41.41 4.16
33 34 1.069227 CGCTACCAAAGAAGGCAACAC 60.069 52.381 0.00 0.00 41.41 3.32
34 35 1.234821 CGCTACCAAAGAAGGCAACA 58.765 50.000 0.00 0.00 41.41 3.33
35 36 0.521735 CCGCTACCAAAGAAGGCAAC 59.478 55.000 0.00 0.00 0.00 4.17
36 37 0.398696 TCCGCTACCAAAGAAGGCAA 59.601 50.000 0.00 0.00 0.00 4.52
37 38 0.036388 CTCCGCTACCAAAGAAGGCA 60.036 55.000 0.00 0.00 0.00 4.75
38 39 0.249398 TCTCCGCTACCAAAGAAGGC 59.751 55.000 0.00 0.00 0.00 4.35
39 40 1.736032 CGTCTCCGCTACCAAAGAAGG 60.736 57.143 0.00 0.00 0.00 3.46
40 41 1.630148 CGTCTCCGCTACCAAAGAAG 58.370 55.000 0.00 0.00 0.00 2.85
41 42 0.245539 CCGTCTCCGCTACCAAAGAA 59.754 55.000 0.00 0.00 0.00 2.52
42 43 0.609957 TCCGTCTCCGCTACCAAAGA 60.610 55.000 0.00 0.00 0.00 2.52
43 44 0.460311 ATCCGTCTCCGCTACCAAAG 59.540 55.000 0.00 0.00 0.00 2.77
44 45 0.174845 CATCCGTCTCCGCTACCAAA 59.825 55.000 0.00 0.00 0.00 3.28
45 46 1.672854 CCATCCGTCTCCGCTACCAA 61.673 60.000 0.00 0.00 0.00 3.67
46 47 2.125326 CCATCCGTCTCCGCTACCA 61.125 63.158 0.00 0.00 0.00 3.25
47 48 2.728817 CCATCCGTCTCCGCTACC 59.271 66.667 0.00 0.00 0.00 3.18
48 49 2.027751 GCCATCCGTCTCCGCTAC 59.972 66.667 0.00 0.00 0.00 3.58
49 50 3.592814 CGCCATCCGTCTCCGCTA 61.593 66.667 0.00 0.00 0.00 4.26
72 73 1.450312 GGAGACAAGGCCACATCGG 60.450 63.158 5.01 0.00 38.11 4.18
73 74 0.460987 GAGGAGACAAGGCCACATCG 60.461 60.000 5.01 0.00 0.00 3.84
74 75 0.908198 AGAGGAGACAAGGCCACATC 59.092 55.000 5.01 0.00 0.00 3.06
75 76 1.366319 AAGAGGAGACAAGGCCACAT 58.634 50.000 5.01 0.00 0.00 3.21
76 77 1.140312 AAAGAGGAGACAAGGCCACA 58.860 50.000 5.01 0.00 0.00 4.17
77 78 1.072331 TCAAAGAGGAGACAAGGCCAC 59.928 52.381 5.01 0.00 0.00 5.01
78 79 1.072331 GTCAAAGAGGAGACAAGGCCA 59.928 52.381 5.01 0.00 34.93 5.36
79 80 1.072331 TGTCAAAGAGGAGACAAGGCC 59.928 52.381 0.00 0.00 41.42 5.19
80 81 2.550830 TGTCAAAGAGGAGACAAGGC 57.449 50.000 0.00 0.00 41.42 4.35
84 85 3.615110 GCGATCTTGTCAAAGAGGAGACA 60.615 47.826 0.00 0.00 45.50 3.41
85 86 2.926838 GCGATCTTGTCAAAGAGGAGAC 59.073 50.000 0.00 0.00 45.50 3.36
86 87 2.416027 CGCGATCTTGTCAAAGAGGAGA 60.416 50.000 0.00 0.00 45.50 3.71
87 88 1.923204 CGCGATCTTGTCAAAGAGGAG 59.077 52.381 0.00 0.00 45.50 3.69
88 89 1.404181 CCGCGATCTTGTCAAAGAGGA 60.404 52.381 8.23 0.00 45.50 3.71
89 90 1.002366 CCGCGATCTTGTCAAAGAGG 58.998 55.000 8.23 0.00 45.50 3.69
90 91 0.371645 GCCGCGATCTTGTCAAAGAG 59.628 55.000 8.23 0.00 45.50 2.85
91 92 1.351430 CGCCGCGATCTTGTCAAAGA 61.351 55.000 8.23 0.00 46.33 2.52
92 93 1.059369 CGCCGCGATCTTGTCAAAG 59.941 57.895 8.23 0.00 34.45 2.77
93 94 1.623081 GACGCCGCGATCTTGTCAAA 61.623 55.000 21.79 0.00 0.00 2.69
94 95 2.048597 ACGCCGCGATCTTGTCAA 60.049 55.556 21.79 0.00 0.00 3.18
95 96 2.506217 GACGCCGCGATCTTGTCA 60.506 61.111 21.79 0.00 0.00 3.58
96 97 2.202623 AGACGCCGCGATCTTGTC 60.203 61.111 21.79 5.15 0.00 3.18
97 98 2.202623 GAGACGCCGCGATCTTGT 60.203 61.111 21.79 0.00 0.00 3.16
98 99 2.956964 GGAGACGCCGCGATCTTG 60.957 66.667 21.79 0.00 0.00 3.02
99 100 3.127352 GAGGAGACGCCGCGATCTT 62.127 63.158 21.79 13.06 43.43 2.40
100 101 3.587933 GAGGAGACGCCGCGATCT 61.588 66.667 21.79 17.61 43.43 2.75
101 102 2.615262 AAAGAGGAGACGCCGCGATC 62.615 60.000 21.79 16.11 41.97 3.69
102 103 2.711922 AAAGAGGAGACGCCGCGAT 61.712 57.895 21.79 7.43 41.97 4.58
103 104 3.371063 AAAGAGGAGACGCCGCGA 61.371 61.111 21.79 0.00 41.97 5.87
104 105 3.181967 CAAAGAGGAGACGCCGCG 61.182 66.667 12.14 12.14 41.97 6.46
105 106 2.095252 GTCAAAGAGGAGACGCCGC 61.095 63.158 0.00 0.00 43.43 6.53
106 107 0.319555 TTGTCAAAGAGGAGACGCCG 60.320 55.000 0.00 0.00 43.43 6.46
107 108 1.000955 TCTTGTCAAAGAGGAGACGCC 59.999 52.381 0.00 0.00 37.51 5.68
108 109 2.440539 TCTTGTCAAAGAGGAGACGC 57.559 50.000 0.00 0.00 37.51 5.19
109 110 3.175152 CGATCTTGTCAAAGAGGAGACG 58.825 50.000 0.00 0.00 45.50 4.18
110 111 2.926838 GCGATCTTGTCAAAGAGGAGAC 59.073 50.000 0.00 0.00 45.50 3.36
111 112 2.416027 CGCGATCTTGTCAAAGAGGAGA 60.416 50.000 0.00 0.00 45.50 3.71
112 113 1.923204 CGCGATCTTGTCAAAGAGGAG 59.077 52.381 0.00 0.00 45.50 3.69
113 114 1.404181 CCGCGATCTTGTCAAAGAGGA 60.404 52.381 8.23 0.00 45.50 3.71
114 115 1.002366 CCGCGATCTTGTCAAAGAGG 58.998 55.000 8.23 0.00 45.50 3.69
115 116 0.371645 GCCGCGATCTTGTCAAAGAG 59.628 55.000 8.23 0.00 45.50 2.85
116 117 1.351430 CGCCGCGATCTTGTCAAAGA 61.351 55.000 8.23 0.00 46.33 2.52
117 118 1.059369 CGCCGCGATCTTGTCAAAG 59.941 57.895 8.23 0.00 34.45 2.77
118 119 1.623081 GACGCCGCGATCTTGTCAAA 61.623 55.000 21.79 0.00 0.00 2.69
119 120 2.048597 ACGCCGCGATCTTGTCAA 60.049 55.556 21.79 0.00 0.00 3.18
120 121 2.506217 GACGCCGCGATCTTGTCA 60.506 61.111 21.79 0.00 0.00 3.58
121 122 2.202623 AGACGCCGCGATCTTGTC 60.203 61.111 21.79 5.15 0.00 3.18
122 123 2.202623 GAGACGCCGCGATCTTGT 60.203 61.111 21.79 0.00 0.00 3.16
123 124 2.956964 GGAGACGCCGCGATCTTG 60.957 66.667 21.79 0.00 0.00 3.02
124 125 3.127352 GAGGAGACGCCGCGATCTT 62.127 63.158 21.79 13.06 43.43 2.40
125 126 3.587933 GAGGAGACGCCGCGATCT 61.588 66.667 21.79 17.61 43.43 2.75
126 127 2.615262 AAAGAGGAGACGCCGCGATC 62.615 60.000 21.79 16.11 41.97 3.69
127 128 2.711922 AAAGAGGAGACGCCGCGAT 61.712 57.895 21.79 7.43 41.97 4.58
128 129 3.371063 AAAGAGGAGACGCCGCGA 61.371 61.111 21.79 0.00 41.97 5.87
129 130 2.890847 ATCAAAGAGGAGACGCCGCG 62.891 60.000 12.14 12.14 41.97 6.46
130 131 1.153549 ATCAAAGAGGAGACGCCGC 60.154 57.895 0.00 0.00 43.43 6.53
131 132 0.173481 TCATCAAAGAGGAGACGCCG 59.827 55.000 0.00 0.00 43.43 6.46
132 133 1.066858 TGTCATCAAAGAGGAGACGCC 60.067 52.381 0.00 0.00 32.08 5.68
133 134 2.094494 TCTGTCATCAAAGAGGAGACGC 60.094 50.000 0.00 0.00 32.08 5.19
134 135 3.857549 TCTGTCATCAAAGAGGAGACG 57.142 47.619 0.00 0.00 32.08 4.18
135 136 4.440880 CCATCTGTCATCAAAGAGGAGAC 58.559 47.826 0.00 0.00 0.00 3.36
136 137 3.453717 CCCATCTGTCATCAAAGAGGAGA 59.546 47.826 0.00 0.00 0.00 3.71
137 138 3.199508 ACCCATCTGTCATCAAAGAGGAG 59.800 47.826 0.00 0.00 0.00 3.69
138 139 3.184628 ACCCATCTGTCATCAAAGAGGA 58.815 45.455 0.00 0.00 0.00 3.71
139 140 3.641434 ACCCATCTGTCATCAAAGAGG 57.359 47.619 0.00 0.00 0.00 3.69
140 141 4.397417 GGAAACCCATCTGTCATCAAAGAG 59.603 45.833 0.00 0.00 0.00 2.85
141 142 4.043310 AGGAAACCCATCTGTCATCAAAGA 59.957 41.667 0.00 0.00 0.00 2.52
142 143 4.338879 AGGAAACCCATCTGTCATCAAAG 58.661 43.478 0.00 0.00 0.00 2.77
143 144 4.335416 GAGGAAACCCATCTGTCATCAAA 58.665 43.478 0.00 0.00 0.00 2.69
144 145 3.308402 GGAGGAAACCCATCTGTCATCAA 60.308 47.826 0.00 0.00 0.00 2.57
145 146 2.239654 GGAGGAAACCCATCTGTCATCA 59.760 50.000 0.00 0.00 0.00 3.07
146 147 2.743183 CGGAGGAAACCCATCTGTCATC 60.743 54.545 0.00 0.00 0.00 2.92
147 148 1.210478 CGGAGGAAACCCATCTGTCAT 59.790 52.381 0.00 0.00 0.00 3.06
148 149 0.613260 CGGAGGAAACCCATCTGTCA 59.387 55.000 0.00 0.00 0.00 3.58
149 150 0.902531 TCGGAGGAAACCCATCTGTC 59.097 55.000 0.00 0.00 0.00 3.51
150 151 0.613777 GTCGGAGGAAACCCATCTGT 59.386 55.000 0.00 0.00 0.00 3.41
151 152 0.460284 CGTCGGAGGAAACCCATCTG 60.460 60.000 0.00 0.00 0.00 2.90
152 153 0.613853 TCGTCGGAGGAAACCCATCT 60.614 55.000 0.00 0.00 0.00 2.90
153 154 0.459759 GTCGTCGGAGGAAACCCATC 60.460 60.000 1.41 0.00 0.00 3.51
154 155 1.189524 TGTCGTCGGAGGAAACCCAT 61.190 55.000 1.41 0.00 0.00 4.00
155 156 1.401318 TTGTCGTCGGAGGAAACCCA 61.401 55.000 1.41 0.00 0.00 4.51
156 157 0.036671 ATTGTCGTCGGAGGAAACCC 60.037 55.000 1.41 0.00 0.00 4.11
157 158 1.730612 GAATTGTCGTCGGAGGAAACC 59.269 52.381 1.41 0.00 0.00 3.27
158 159 2.157085 GTGAATTGTCGTCGGAGGAAAC 59.843 50.000 1.41 0.00 0.00 2.78
159 160 2.409975 GTGAATTGTCGTCGGAGGAAA 58.590 47.619 1.41 0.00 0.00 3.13
160 161 1.337447 GGTGAATTGTCGTCGGAGGAA 60.337 52.381 1.41 0.00 0.00 3.36
161 162 0.245539 GGTGAATTGTCGTCGGAGGA 59.754 55.000 0.00 0.00 0.00 3.71
162 163 0.246635 AGGTGAATTGTCGTCGGAGG 59.753 55.000 0.00 0.00 0.00 4.30
168 169 0.324943 CCAGGGAGGTGAATTGTCGT 59.675 55.000 0.00 0.00 0.00 4.34
215 216 3.255379 GATGCCTTCGGTCGACGC 61.255 66.667 9.92 7.46 43.86 5.19
228 229 1.696832 GAAGCTTGACCGGACGATGC 61.697 60.000 9.46 8.03 0.00 3.91
237 238 0.951040 CCACACTCGGAAGCTTGACC 60.951 60.000 2.10 0.00 0.00 4.02
240 241 2.328099 GCCCACACTCGGAAGCTTG 61.328 63.158 2.10 0.00 0.00 4.01
241 242 2.032681 GCCCACACTCGGAAGCTT 59.967 61.111 0.00 0.00 0.00 3.74
242 243 2.056906 AAAGCCCACACTCGGAAGCT 62.057 55.000 0.00 0.00 0.00 3.74
243 244 1.600916 AAAGCCCACACTCGGAAGC 60.601 57.895 0.00 0.00 0.00 3.86
244 245 1.856265 GCAAAGCCCACACTCGGAAG 61.856 60.000 0.00 0.00 0.00 3.46
245 246 1.896660 GCAAAGCCCACACTCGGAA 60.897 57.895 0.00 0.00 0.00 4.30
246 247 2.281484 GCAAAGCCCACACTCGGA 60.281 61.111 0.00 0.00 0.00 4.55
247 248 3.726517 CGCAAAGCCCACACTCGG 61.727 66.667 0.00 0.00 0.00 4.63
248 249 2.034879 ATCGCAAAGCCCACACTCG 61.035 57.895 0.00 0.00 0.00 4.18
249 250 1.503542 CATCGCAAAGCCCACACTC 59.496 57.895 0.00 0.00 0.00 3.51
250 251 1.973281 CCATCGCAAAGCCCACACT 60.973 57.895 0.00 0.00 0.00 3.55
251 252 2.568090 CCATCGCAAAGCCCACAC 59.432 61.111 0.00 0.00 0.00 3.82
252 253 3.372730 GCCATCGCAAAGCCCACA 61.373 61.111 0.00 0.00 34.03 4.17
253 254 4.133796 GGCCATCGCAAAGCCCAC 62.134 66.667 0.00 0.00 41.00 4.61
257 258 1.718757 CCAGTAGGCCATCGCAAAGC 61.719 60.000 5.01 0.00 36.38 3.51
258 259 0.392998 ACCAGTAGGCCATCGCAAAG 60.393 55.000 5.01 0.00 39.06 2.77
259 260 0.037590 AACCAGTAGGCCATCGCAAA 59.962 50.000 5.01 0.00 39.06 3.68
260 261 0.676466 CAACCAGTAGGCCATCGCAA 60.676 55.000 5.01 0.00 39.06 4.85
261 262 1.078497 CAACCAGTAGGCCATCGCA 60.078 57.895 5.01 0.00 39.06 5.10
262 263 1.819632 CCAACCAGTAGGCCATCGC 60.820 63.158 5.01 0.00 39.06 4.58
263 264 1.819632 GCCAACCAGTAGGCCATCG 60.820 63.158 5.01 0.00 45.18 3.84
264 265 4.242602 GCCAACCAGTAGGCCATC 57.757 61.111 5.01 0.00 45.18 3.51
269 270 5.602628 GAAACTATAGAGCCAACCAGTAGG 58.397 45.833 6.78 0.00 42.21 3.18
270 271 5.163540 ACGAAACTATAGAGCCAACCAGTAG 60.164 44.000 6.78 0.00 0.00 2.57
271 272 4.708421 ACGAAACTATAGAGCCAACCAGTA 59.292 41.667 6.78 0.00 0.00 2.74
272 273 3.514309 ACGAAACTATAGAGCCAACCAGT 59.486 43.478 6.78 0.00 0.00 4.00
273 274 3.865745 CACGAAACTATAGAGCCAACCAG 59.134 47.826 6.78 0.00 0.00 4.00
274 275 3.259876 ACACGAAACTATAGAGCCAACCA 59.740 43.478 6.78 0.00 0.00 3.67
275 276 3.858247 ACACGAAACTATAGAGCCAACC 58.142 45.455 6.78 0.00 0.00 3.77
276 277 5.690857 GGATACACGAAACTATAGAGCCAAC 59.309 44.000 6.78 0.00 0.00 3.77
277 278 5.597182 AGGATACACGAAACTATAGAGCCAA 59.403 40.000 6.78 0.00 41.41 4.52
278 279 5.138276 AGGATACACGAAACTATAGAGCCA 58.862 41.667 6.78 0.00 41.41 4.75
279 280 5.708877 AGGATACACGAAACTATAGAGCC 57.291 43.478 6.78 0.00 41.41 4.70
280 281 7.516943 GCAAAAGGATACACGAAACTATAGAGC 60.517 40.741 6.78 0.00 41.41 4.09
281 282 7.707035 AGCAAAAGGATACACGAAACTATAGAG 59.293 37.037 6.78 0.00 41.41 2.43
282 283 7.491372 CAGCAAAAGGATACACGAAACTATAGA 59.509 37.037 6.78 0.00 41.41 1.98
283 284 7.277981 ACAGCAAAAGGATACACGAAACTATAG 59.722 37.037 0.00 0.00 41.41 1.31
284 285 7.101054 ACAGCAAAAGGATACACGAAACTATA 58.899 34.615 0.00 0.00 41.41 1.31
285 286 5.938125 ACAGCAAAAGGATACACGAAACTAT 59.062 36.000 0.00 0.00 41.41 2.12
286 287 5.302360 ACAGCAAAAGGATACACGAAACTA 58.698 37.500 0.00 0.00 41.41 2.24
287 288 4.134563 ACAGCAAAAGGATACACGAAACT 58.865 39.130 0.00 0.00 41.41 2.66
288 289 4.483476 ACAGCAAAAGGATACACGAAAC 57.517 40.909 0.00 0.00 41.41 2.78
289 290 5.508200 AAACAGCAAAAGGATACACGAAA 57.492 34.783 0.00 0.00 41.41 3.46
290 291 5.163602 ACAAAACAGCAAAAGGATACACGAA 60.164 36.000 0.00 0.00 41.41 3.85
291 292 4.336993 ACAAAACAGCAAAAGGATACACGA 59.663 37.500 0.00 0.00 41.41 4.35
292 293 4.440758 CACAAAACAGCAAAAGGATACACG 59.559 41.667 0.00 0.00 41.41 4.49
293 294 5.231991 CACACAAAACAGCAAAAGGATACAC 59.768 40.000 0.00 0.00 41.41 2.90
294 295 5.105554 ACACACAAAACAGCAAAAGGATACA 60.106 36.000 0.00 0.00 41.41 2.29
295 296 5.231991 CACACACAAAACAGCAAAAGGATAC 59.768 40.000 0.00 0.00 0.00 2.24
296 297 5.105554 ACACACACAAAACAGCAAAAGGATA 60.106 36.000 0.00 0.00 0.00 2.59
318 319 3.690139 ACACAACAACATTAACACGGACA 59.310 39.130 0.00 0.00 0.00 4.02
360 362 2.447443 TGACGCTCTTACAGACCAGAT 58.553 47.619 0.00 0.00 0.00 2.90
361 363 1.905637 TGACGCTCTTACAGACCAGA 58.094 50.000 0.00 0.00 0.00 3.86
367 369 5.554636 GTTGAATCAATGACGCTCTTACAG 58.445 41.667 0.00 0.00 0.00 2.74
439 441 0.814457 TTTGGTTGCTCGCACTGTTT 59.186 45.000 0.00 0.00 0.00 2.83
442 444 1.369209 CGTTTGGTTGCTCGCACTG 60.369 57.895 0.00 0.00 0.00 3.66
444 446 1.654137 CACGTTTGGTTGCTCGCAC 60.654 57.895 0.00 0.00 0.00 5.34
454 456 1.944024 TGCCAGTAAGAACACGTTTGG 59.056 47.619 0.00 0.00 0.00 3.28
482 484 3.319755 GCAGTGTTAAACAGTACGGCTA 58.680 45.455 0.00 0.00 32.70 3.93
704 722 1.600107 GGAGGTATGTGGCGGTTGA 59.400 57.895 0.00 0.00 0.00 3.18
716 734 4.403502 GGGTGGGGTCGGGAGGTA 62.404 72.222 0.00 0.00 0.00 3.08
806 825 2.701951 GAGGTTATATGTGGGTTCGGGA 59.298 50.000 0.00 0.00 0.00 5.14
892 915 1.303282 GTGGGGGTTGGGATCTGTC 59.697 63.158 0.00 0.00 0.00 3.51
893 916 2.238701 GGTGGGGGTTGGGATCTGT 61.239 63.158 0.00 0.00 0.00 3.41
954 987 1.500783 CCTCCCTTGGCTCCTTCCAA 61.501 60.000 0.00 0.00 43.36 3.53
955 988 1.925455 CCTCCCTTGGCTCCTTCCA 60.925 63.158 0.00 0.00 0.00 3.53
956 989 2.684499 CCCTCCCTTGGCTCCTTCC 61.684 68.421 0.00 0.00 0.00 3.46
959 992 2.041928 CTCCCTCCCTTGGCTCCT 59.958 66.667 0.00 0.00 0.00 3.69
961 994 3.803162 GCCTCCCTCCCTTGGCTC 61.803 72.222 0.00 0.00 41.92 4.70
965 998 4.168291 GAGCGCCTCCCTCCCTTG 62.168 72.222 2.29 0.00 0.00 3.61
1209 1243 1.200020 GAAAACGCAGGGAATGAGTGG 59.800 52.381 0.00 0.00 41.55 4.00
1218 1252 0.600255 AGACACGAGAAAACGCAGGG 60.600 55.000 0.00 0.00 36.70 4.45
1235 1269 1.380515 CTTCCCGGAGCTCTGGAGA 60.381 63.158 38.46 29.38 45.36 3.71
1244 1278 3.060615 ACCGACGACTTCCCGGAG 61.061 66.667 0.73 0.00 45.58 4.63
1329 1363 6.204108 TCAGGACCGACTATTTGAAAGAAAAC 59.796 38.462 0.00 0.00 0.00 2.43
1361 1396 2.995258 CAAGCCAGCAATAACGCAATTT 59.005 40.909 0.00 0.00 0.00 1.82
1582 1621 4.367386 ACTAATTGCAATTGAGAGCAGC 57.633 40.909 30.43 0.00 42.39 5.25
1592 1631 9.768662 ATTTGAACTGAAGAAACTAATTGCAAT 57.231 25.926 5.99 5.99 0.00 3.56
1631 1670 4.620184 GCAAATGAGAGCAGCTTTTAACAG 59.380 41.667 0.00 0.00 0.00 3.16
1635 1674 4.852134 TTGCAAATGAGAGCAGCTTTTA 57.148 36.364 0.00 0.00 42.39 1.52
1650 1689 5.492895 TCTCTGGTCGGTTATAATTGCAAA 58.507 37.500 1.71 0.00 0.00 3.68
1669 1708 7.418483 GGTGCTTTCTTATATGTTCCTCTCTCT 60.418 40.741 0.00 0.00 0.00 3.10
1677 1716 4.640201 TGCAGGGTGCTTTCTTATATGTTC 59.360 41.667 0.00 0.00 45.31 3.18
1694 1735 3.933861 AAGTAGTTAGGGAATGCAGGG 57.066 47.619 0.00 0.00 0.00 4.45
1770 1813 4.612932 TTGATGCAAAAGTGGCAAAAAC 57.387 36.364 0.00 0.00 45.60 2.43
1800 1844 3.057806 GGGTCGGTTACAATTTCAACAGG 60.058 47.826 2.31 0.00 0.00 4.00
1857 1901 6.546034 AGTTCAGTGCACCAAGTAAAATAAGT 59.454 34.615 14.63 0.00 0.00 2.24
1864 1908 4.409718 TGTAGTTCAGTGCACCAAGTAA 57.590 40.909 14.63 0.00 0.00 2.24
2048 2260 6.594159 ACAATGTCATTTACTCCTTAGTTCCG 59.406 38.462 0.00 0.00 37.15 4.30
2049 2261 7.148239 CCACAATGTCATTTACTCCTTAGTTCC 60.148 40.741 0.00 0.00 37.15 3.62
2224 2436 5.533154 TCAAATGAAACTCGTACCACCAAAT 59.467 36.000 0.00 0.00 0.00 2.32
2225 2437 4.882427 TCAAATGAAACTCGTACCACCAAA 59.118 37.500 0.00 0.00 0.00 3.28
2226 2438 4.452825 TCAAATGAAACTCGTACCACCAA 58.547 39.130 0.00 0.00 0.00 3.67
2227 2439 4.074627 TCAAATGAAACTCGTACCACCA 57.925 40.909 0.00 0.00 0.00 4.17
2228 2440 4.612939 GCTTCAAATGAAACTCGTACCACC 60.613 45.833 0.00 0.00 33.07 4.61
2229 2441 4.213482 AGCTTCAAATGAAACTCGTACCAC 59.787 41.667 0.00 0.00 33.07 4.16
2230 2442 4.213270 CAGCTTCAAATGAAACTCGTACCA 59.787 41.667 0.00 0.00 33.07 3.25
2231 2443 4.213482 ACAGCTTCAAATGAAACTCGTACC 59.787 41.667 0.00 0.00 33.07 3.34
2232 2444 5.344207 ACAGCTTCAAATGAAACTCGTAC 57.656 39.130 0.00 0.00 33.07 3.67
2233 2445 6.220930 AGTACAGCTTCAAATGAAACTCGTA 58.779 36.000 0.00 2.05 33.07 3.43
2234 2446 5.057149 AGTACAGCTTCAAATGAAACTCGT 58.943 37.500 0.00 2.80 33.07 4.18
2235 2447 5.597813 AGTACAGCTTCAAATGAAACTCG 57.402 39.130 0.00 0.00 33.07 4.18
2236 2448 7.600752 ACTCTAGTACAGCTTCAAATGAAACTC 59.399 37.037 0.00 0.00 33.07 3.01
2237 2449 7.445945 ACTCTAGTACAGCTTCAAATGAAACT 58.554 34.615 0.00 0.83 33.07 2.66
2238 2450 7.659652 ACTCTAGTACAGCTTCAAATGAAAC 57.340 36.000 0.00 0.00 33.07 2.78
2290 2527 8.926710 GCGCATAATTCTTAGATGTGTTATAGT 58.073 33.333 0.30 0.00 34.33 2.12
2510 2747 3.007831 TCTTCCACAAATGAAATTGCCCC 59.992 43.478 0.00 0.00 36.10 5.80
2659 2896 6.260714 TCACATATGCTTTGATGTCATACACC 59.739 38.462 1.58 0.00 34.01 4.16
2665 2902 7.769970 TCAGTAATCACATATGCTTTGATGTCA 59.230 33.333 1.58 0.00 34.01 3.58
2744 2985 3.684908 TCCTAACAGCAGCTGCATTAAA 58.315 40.909 38.24 21.92 45.16 1.52
2788 3029 1.368641 TCGATTTTCCAGTCATGCGG 58.631 50.000 0.00 0.00 0.00 5.69
2935 3176 3.520290 TCTTTAGGAGTACGTGCATGG 57.480 47.619 11.36 0.00 0.00 3.66
3122 3379 8.763049 AAGAATTTTATGCTAACCAAAGAAGC 57.237 30.769 0.00 0.00 36.77 3.86
3246 3503 6.523201 GCTGTGATTATTTTACCTTGTCAACG 59.477 38.462 0.00 0.00 0.00 4.10
3267 3524 3.007940 TCAGTATAGCAAACCACAGCTGT 59.992 43.478 15.25 15.25 41.97 4.40
3923 4180 3.932545 AGTGATATGCTCATCGAGGAC 57.067 47.619 0.00 0.00 35.97 3.85
3949 4340 7.098845 ACCTAGGGTCAATTAAGAAAGGAAA 57.901 36.000 14.81 0.00 0.00 3.13
4031 4422 5.413499 ACATTTTTGTTGATATCAGCCTGC 58.587 37.500 15.96 2.63 0.00 4.85
4625 5019 9.865321 CATCATTATGAAAGGAAAAGTCACATT 57.135 29.630 0.00 0.00 34.84 2.71
4657 5053 7.801104 TCTAGGATTGCCACTTTATCAACATA 58.199 34.615 0.00 0.00 36.29 2.29
4660 5056 8.854614 ATATCTAGGATTGCCACTTTATCAAC 57.145 34.615 0.00 0.00 36.29 3.18
4666 5062 9.326489 TCACTATATATCTAGGATTGCCACTTT 57.674 33.333 0.74 0.00 36.29 2.66
4668 5064 8.901472 TTCACTATATATCTAGGATTGCCACT 57.099 34.615 0.74 0.00 36.29 4.00
4670 5066 9.720874 ATCTTCACTATATATCTAGGATTGCCA 57.279 33.333 0.74 0.00 36.29 4.92
4858 5254 7.481275 AATGACTTTTCGAACATTTTGCAAT 57.519 28.000 0.00 0.00 30.31 3.56
5077 5473 8.045176 AGAAGATTAGTTAAGTTGGCATGTTC 57.955 34.615 0.00 0.00 0.00 3.18
5083 5479 7.617041 ACATGAGAAGATTAGTTAAGTTGGC 57.383 36.000 0.00 0.00 0.00 4.52
5148 5544 5.189736 AGTCCAGCAATATCCTGAGTTAACA 59.810 40.000 8.61 0.00 32.03 2.41
5198 5594 6.314917 ACTTTGACAAGATAATGGTTCCCTT 58.685 36.000 0.00 0.00 33.72 3.95
5231 5726 6.461788 GCAACAAACTTACTAAACCATTCCCA 60.462 38.462 0.00 0.00 0.00 4.37
5319 5814 8.664669 TTGCTATCACATATCCTCCTTATGTA 57.335 34.615 0.00 0.00 38.02 2.29
5515 6014 0.764369 AGTCCAAGGCAGGAGTGACA 60.764 55.000 5.64 0.00 39.85 3.58
5736 6235 2.185004 TGTTAGCTCCTTTGTCTGGC 57.815 50.000 0.00 0.00 0.00 4.85
5834 6333 5.508280 AACAGTTGCCCTAACCAATAGTA 57.492 39.130 0.00 0.00 40.24 1.82
5844 6343 4.919774 TCATCCTAAAACAGTTGCCCTA 57.080 40.909 0.00 0.00 0.00 3.53
5958 6461 1.105759 CAGGGCCTAAAGCTGGATGC 61.106 60.000 5.28 0.00 43.05 3.91
5992 6497 6.041865 TCACATGAAACAGGACCATGAAAAAT 59.958 34.615 0.00 0.00 39.86 1.82
6047 6573 5.512753 TGCTTTGAAGAAGTTAACATGCA 57.487 34.783 8.61 2.69 0.00 3.96
6052 6578 6.603095 ACGATGATGCTTTGAAGAAGTTAAC 58.397 36.000 0.00 0.00 0.00 2.01
6169 6696 3.415212 CTTCCTCCATTTTGCTGTCTCA 58.585 45.455 0.00 0.00 0.00 3.27
6172 6699 1.888512 TGCTTCCTCCATTTTGCTGTC 59.111 47.619 0.00 0.00 0.00 3.51
6191 6718 8.335532 TGATCCTAAACAAAGGTTGATTACTG 57.664 34.615 0.00 0.00 37.30 2.74
6196 6723 9.479549 AATACATGATCCTAAACAAAGGTTGAT 57.520 29.630 0.00 0.00 37.30 2.57
6229 6756 1.165270 CCAAGCCCTGAGGTTTTACG 58.835 55.000 0.00 0.00 33.67 3.18
6232 6759 2.702270 ATTCCAAGCCCTGAGGTTTT 57.298 45.000 0.00 0.00 33.67 2.43
6239 6766 2.480073 CGTGCAATTATTCCAAGCCCTG 60.480 50.000 0.00 0.00 0.00 4.45
6242 6769 2.163412 TCACGTGCAATTATTCCAAGCC 59.837 45.455 11.67 0.00 0.00 4.35
6260 6787 1.464997 GGCGAGTTTGTCCTTCATCAC 59.535 52.381 0.00 0.00 0.00 3.06
6309 6836 7.766278 GTGATTGACTCTGTTAACATGGATAGT 59.234 37.037 9.13 7.88 0.00 2.12
6345 6872 5.766222 TGTTAAGGTCGACTCTGTTAAGAC 58.234 41.667 16.46 5.71 0.00 3.01
6346 6873 5.766670 TCTGTTAAGGTCGACTCTGTTAAGA 59.233 40.000 16.46 11.34 0.00 2.10
6349 6876 5.068636 ACTCTGTTAAGGTCGACTCTGTTA 58.931 41.667 16.46 5.90 0.00 2.41
6350 6877 3.890147 ACTCTGTTAAGGTCGACTCTGTT 59.110 43.478 16.46 6.85 0.00 3.16
6351 6878 3.488363 ACTCTGTTAAGGTCGACTCTGT 58.512 45.455 16.46 0.90 0.00 3.41
6352 6879 4.086199 GACTCTGTTAAGGTCGACTCTG 57.914 50.000 16.46 5.83 0.00 3.35
6415 9515 9.417561 AGATGATACATTTGATCCTGAAACAAT 57.582 29.630 0.00 0.00 0.00 2.71
6429 9529 9.412460 ACCATGTTGATGTAAGATGATACATTT 57.588 29.630 1.87 0.00 44.44 2.32
6586 9686 5.718649 TGTGCGAAAATAGTAGATTCAGC 57.281 39.130 0.00 0.00 0.00 4.26
6651 9752 2.564561 TTTGCCCACTGACTGGTGCA 62.565 55.000 0.00 0.00 41.73 4.57
7073 10177 0.034896 AACGGTGTCTGTCCATGTCC 59.965 55.000 0.00 0.00 0.00 4.02
7145 10249 9.793252 AACAAAGAATACATCATCTGCATTAAC 57.207 29.630 0.00 0.00 0.00 2.01
7151 10255 8.804743 CAATTGAACAAAGAATACATCATCTGC 58.195 33.333 0.00 0.00 0.00 4.26
7204 10313 5.679734 AAGATGATGAATACGCATGGAAC 57.320 39.130 0.00 0.00 0.00 3.62
7207 10316 6.497437 TGAAAAAGATGATGAATACGCATGG 58.503 36.000 0.00 0.00 0.00 3.66
7208 10317 7.358105 GCATGAAAAAGATGATGAATACGCATG 60.358 37.037 0.00 0.00 0.00 4.06
7209 10318 6.639686 GCATGAAAAAGATGATGAATACGCAT 59.360 34.615 0.00 0.00 0.00 4.73
7212 10321 6.732154 AGGCATGAAAAAGATGATGAATACG 58.268 36.000 0.00 0.00 0.00 3.06
7213 10322 8.192774 TCAAGGCATGAAAAAGATGATGAATAC 58.807 33.333 0.00 0.00 34.30 1.89
7215 10324 7.177832 TCAAGGCATGAAAAAGATGATGAAT 57.822 32.000 0.00 0.00 34.30 2.57
7222 10331 5.266788 TGGAGATCAAGGCATGAAAAAGAT 58.733 37.500 0.00 0.00 42.54 2.40
7223 10332 4.665451 TGGAGATCAAGGCATGAAAAAGA 58.335 39.130 0.00 0.00 42.54 2.52
7227 10336 5.018149 TCAATTGGAGATCAAGGCATGAAA 58.982 37.500 5.42 0.00 42.54 2.69
7228 10337 4.602107 TCAATTGGAGATCAAGGCATGAA 58.398 39.130 5.42 0.00 42.54 2.57
7229 10338 4.239428 TCAATTGGAGATCAAGGCATGA 57.761 40.909 5.42 0.00 43.67 3.07
7231 10340 4.401519 CAGTTCAATTGGAGATCAAGGCAT 59.598 41.667 5.42 0.00 38.95 4.40
7232 10341 3.760151 CAGTTCAATTGGAGATCAAGGCA 59.240 43.478 5.42 0.00 38.95 4.75
7249 10428 3.066621 TGCTGTTTGTGACCAATCAGTTC 59.933 43.478 12.52 1.96 44.67 3.01
7253 10432 2.929641 TCTGCTGTTTGTGACCAATCA 58.070 42.857 0.00 0.00 0.00 2.57
7300 10479 8.902806 CCTCCAATAGCAAAACATGTAATAGAA 58.097 33.333 0.00 0.00 0.00 2.10
7303 10482 6.238621 CGCCTCCAATAGCAAAACATGTAATA 60.239 38.462 0.00 0.00 0.00 0.98
7304 10483 5.450412 CGCCTCCAATAGCAAAACATGTAAT 60.450 40.000 0.00 0.00 0.00 1.89
7315 10494 1.626356 AAGAGCCGCCTCCAATAGCA 61.626 55.000 0.00 0.00 38.96 3.49
7368 10547 1.375396 CGACCCCAGCAACATCGAA 60.375 57.895 0.00 0.00 34.77 3.71
7411 10590 2.279517 GAGGGCCGTCATACAGCG 60.280 66.667 20.47 0.00 0.00 5.18
7412 10591 1.068250 GAGAGGGCCGTCATACAGC 59.932 63.158 26.40 5.61 0.00 4.40
7516 10695 1.762708 AGCCCATTTGGTTACGGATG 58.237 50.000 0.00 0.00 36.04 3.51
7532 10711 3.307242 CGTTGCTTCTTCTACATGTAGCC 59.693 47.826 25.31 10.85 33.32 3.93
7533 10712 3.927142 ACGTTGCTTCTTCTACATGTAGC 59.073 43.478 25.31 16.98 33.32 3.58
7535 10714 3.678072 GCACGTTGCTTCTTCTACATGTA 59.322 43.478 5.25 5.25 40.96 2.29
7538 10717 2.766313 TGCACGTTGCTTCTTCTACAT 58.234 42.857 10.54 0.00 45.31 2.29
7561 10740 3.490759 GATCCACCAGCGCACACG 61.491 66.667 11.47 0.00 44.07 4.49
7661 10965 2.442272 GAGGCCTACAGCGAGGGA 60.442 66.667 4.42 0.00 45.17 4.20
7724 11028 2.657143 GTGAGGTACGAGGAAGAGGAT 58.343 52.381 0.00 0.00 0.00 3.24
7781 11085 4.265056 GGCCTGACAACCACCGGT 62.265 66.667 0.00 0.00 37.65 5.28
7820 11127 4.519612 TGTGCTGTGCCAAGGCCA 62.520 61.111 5.01 5.43 41.09 5.36
7822 11129 3.982241 GGTGTGCTGTGCCAAGGC 61.982 66.667 3.61 3.61 42.35 4.35
7837 11144 4.922026 GTCAACACCACCGCCGGT 62.922 66.667 1.02 1.02 41.07 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.