Multiple sequence alignment - TraesCS4D01G045800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G045800 chr4D 100.000 5868 0 0 931 6798 21516556 21522423 0.000000e+00 10837.0
1 TraesCS4D01G045800 chr4D 82.963 2970 494 7 2838 5799 509187906 509184941 0.000000e+00 2671.0
2 TraesCS4D01G045800 chr4D 100.000 704 0 0 1 704 21515626 21516329 0.000000e+00 1301.0
3 TraesCS4D01G045800 chr4D 84.952 525 77 2 1808 2332 509188650 509188128 1.300000e-146 531.0
4 TraesCS4D01G045800 chr4D 93.694 222 14 0 1000 1221 509189718 509189497 3.930000e-87 333.0
5 TraesCS4D01G045800 chr4A 96.734 5205 126 20 931 6129 580485191 580490357 0.000000e+00 8630.0
6 TraesCS4D01G045800 chr4A 92.937 269 7 5 406 666 580484695 580484959 1.380000e-101 381.0
7 TraesCS4D01G045800 chr4A 94.634 205 11 0 6594 6798 580490666 580490870 1.100000e-82 318.0
8 TraesCS4D01G045800 chr4A 88.406 69 5 3 1732 1798 580485817 580485884 5.650000e-11 80.5
9 TraesCS4D01G045800 chr4B 97.007 4276 123 4 1790 6061 33353359 33349085 0.000000e+00 7182.0
10 TraesCS4D01G045800 chr4B 83.384 2967 481 7 2838 5796 657979787 657982749 0.000000e+00 2737.0
11 TraesCS4D01G045800 chr4B 94.154 804 36 8 931 1730 33354156 33353360 0.000000e+00 1214.0
12 TraesCS4D01G045800 chr4B 95.874 412 17 0 4763 5174 33180071 33179660 0.000000e+00 667.0
13 TraesCS4D01G045800 chr4B 85.660 523 71 3 1808 2329 657979042 657979561 1.290000e-151 547.0
14 TraesCS4D01G045800 chr4B 82.890 602 63 22 6224 6798 33349087 33348499 7.870000e-139 505.0
15 TraesCS4D01G045800 chr4B 94.671 319 11 4 364 682 33354803 33354491 2.200000e-134 490.0
16 TraesCS4D01G045800 chr4B 93.897 213 13 0 1000 1212 657978054 657978266 8.510000e-84 322.0
17 TraesCS4D01G045800 chr4B 91.837 49 4 0 1744 1792 33353511 33353463 1.220000e-07 69.4
18 TraesCS4D01G045800 chr4B 100.000 32 0 0 999 1030 657861773 657861804 7.360000e-05 60.2
19 TraesCS4D01G045800 chr5A 82.862 2970 497 7 2838 5799 697900121 697897156 0.000000e+00 2654.0
20 TraesCS4D01G045800 chr5A 84.952 525 77 1 1808 2332 697900824 697900302 1.300000e-146 531.0
21 TraesCS4D01G045800 chr5A 87.681 276 25 8 977 1247 697901802 697901531 5.120000e-81 313.0
22 TraesCS4D01G045800 chr2D 93.353 346 23 0 4 349 204488974 204488629 4.700000e-141 512.0
23 TraesCS4D01G045800 chr5D 92.775 346 25 0 4 349 545219500 545219155 1.020000e-137 501.0
24 TraesCS4D01G045800 chr5D 92.286 350 26 1 1 349 311609103 311609452 4.740000e-136 496.0
25 TraesCS4D01G045800 chr1D 92.529 348 26 0 1 348 223774128 223774475 3.660000e-137 499.0
26 TraesCS4D01G045800 chr1B 91.643 347 29 0 1 347 323328476 323328822 1.330000e-131 481.0
27 TraesCS4D01G045800 chr2A 91.618 346 28 1 4 349 566630422 566630078 1.720000e-130 477.0
28 TraesCS4D01G045800 chr2A 91.354 347 26 1 2 348 151262909 151263251 7.980000e-129 472.0
29 TraesCS4D01G045800 chr2A 90.805 348 31 1 1 347 73547221 73547568 1.340000e-126 464.0
30 TraesCS4D01G045800 chr2A 94.872 39 1 1 357 394 733925460 733925422 7.360000e-05 60.2
31 TraesCS4D01G045800 chr2A 90.476 42 4 0 347 388 767566393 767566352 1.000000e-03 56.5
32 TraesCS4D01G045800 chr7A 91.092 348 30 1 1 348 307009728 307010074 2.870000e-128 470.0
33 TraesCS4D01G045800 chr7A 100.000 33 0 0 355 387 81135060 81135092 2.050000e-05 62.1
34 TraesCS4D01G045800 chr7A 100.000 31 0 0 357 387 579340242 579340272 2.650000e-04 58.4
35 TraesCS4D01G045800 chr3B 97.436 39 1 0 1824 1862 713545318 713545280 4.400000e-07 67.6
36 TraesCS4D01G045800 chr2B 100.000 33 0 0 355 387 9892059 9892091 2.050000e-05 62.1
37 TraesCS4D01G045800 chr2B 100.000 33 0 0 355 387 59217985 59218017 2.050000e-05 62.1
38 TraesCS4D01G045800 chr5B 100.000 32 0 0 356 387 418466876 418466845 7.360000e-05 60.2
39 TraesCS4D01G045800 chr7B 94.595 37 2 0 357 393 537165921 537165885 2.650000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G045800 chr4D 21515626 21522423 6797 False 6069.000000 10837 100.0000 1 6798 2 chr4D.!!$F1 6797
1 TraesCS4D01G045800 chr4D 509184941 509189718 4777 True 1178.333333 2671 87.2030 1000 5799 3 chr4D.!!$R1 4799
2 TraesCS4D01G045800 chr4A 580484695 580490357 5662 False 4505.500000 8630 94.8355 406 6129 2 chr4A.!!$F3 5723
3 TraesCS4D01G045800 chr4B 33348499 33354803 6304 True 1892.080000 7182 92.1118 364 6798 5 chr4B.!!$R2 6434
4 TraesCS4D01G045800 chr4B 657978054 657982749 4695 False 1202.000000 2737 87.6470 1000 5796 3 chr4B.!!$F2 4796
5 TraesCS4D01G045800 chr5A 697897156 697901802 4646 True 1166.000000 2654 85.1650 977 5799 3 chr5A.!!$R1 4822

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
286 287 0.889994 AGCGATGGCATTTTTGAGCA 59.110 45.000 0.0 0.0 43.41 4.26 F
314 315 1.053424 TCCTAGTGGCAAAACCGAGT 58.947 50.000 0.0 0.0 43.94 4.18 F
1462 2076 1.070289 GGATGGGTTGGTCGGATCTAC 59.930 57.143 0.0 0.0 0.00 2.59 F
2986 3998 1.212751 GGATGCCACAAAGCGAACC 59.787 57.895 0.0 0.0 34.65 3.62 F
4758 5770 0.319641 GAAGGTGAAGCGAACGAGGT 60.320 55.000 0.0 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2033 2885 1.447140 GTGGAAGGACGCGCACATA 60.447 57.895 5.73 0.00 0.00 2.29 R
2571 3583 5.234752 TCTTGCGTTCAGCTAGTTTTGATA 58.765 37.500 0.00 0.00 46.39 2.15 R
3178 4190 2.106511 CTGAACTTCCTTCTGGGTGGAA 59.893 50.000 0.00 0.00 39.73 3.53 R
4765 5780 0.256177 GATCCCAACCACCTTCCTCC 59.744 60.000 0.00 0.00 0.00 4.30 R
6681 7735 0.100503 AAAAACCAGCTGTGCACGTC 59.899 50.000 13.81 6.19 0.00 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.961438 GACGAAAATACCCCTATACCCA 57.039 45.455 0.00 0.00 0.00 4.51
22 23 4.635223 GACGAAAATACCCCTATACCCAC 58.365 47.826 0.00 0.00 0.00 4.61
23 24 4.301205 ACGAAAATACCCCTATACCCACT 58.699 43.478 0.00 0.00 0.00 4.00
24 25 4.723285 ACGAAAATACCCCTATACCCACTT 59.277 41.667 0.00 0.00 0.00 3.16
25 26 5.061179 CGAAAATACCCCTATACCCACTTG 58.939 45.833 0.00 0.00 0.00 3.16
26 27 5.397109 CGAAAATACCCCTATACCCACTTGT 60.397 44.000 0.00 0.00 0.00 3.16
27 28 5.641789 AAATACCCCTATACCCACTTGTC 57.358 43.478 0.00 0.00 0.00 3.18
28 29 2.653543 ACCCCTATACCCACTTGTCA 57.346 50.000 0.00 0.00 0.00 3.58
29 30 2.478292 ACCCCTATACCCACTTGTCAG 58.522 52.381 0.00 0.00 0.00 3.51
30 31 1.141053 CCCCTATACCCACTTGTCAGC 59.859 57.143 0.00 0.00 0.00 4.26
31 32 2.119495 CCCTATACCCACTTGTCAGCT 58.881 52.381 0.00 0.00 0.00 4.24
32 33 2.103263 CCCTATACCCACTTGTCAGCTC 59.897 54.545 0.00 0.00 0.00 4.09
33 34 3.034635 CCTATACCCACTTGTCAGCTCT 58.965 50.000 0.00 0.00 0.00 4.09
34 35 3.068873 CCTATACCCACTTGTCAGCTCTC 59.931 52.174 0.00 0.00 0.00 3.20
35 36 2.310779 TACCCACTTGTCAGCTCTCT 57.689 50.000 0.00 0.00 0.00 3.10
36 37 0.972883 ACCCACTTGTCAGCTCTCTC 59.027 55.000 0.00 0.00 0.00 3.20
37 38 1.265236 CCCACTTGTCAGCTCTCTCT 58.735 55.000 0.00 0.00 0.00 3.10
38 39 2.225142 ACCCACTTGTCAGCTCTCTCTA 60.225 50.000 0.00 0.00 0.00 2.43
39 40 3.030291 CCCACTTGTCAGCTCTCTCTAT 58.970 50.000 0.00 0.00 0.00 1.98
40 41 3.068024 CCCACTTGTCAGCTCTCTCTATC 59.932 52.174 0.00 0.00 0.00 2.08
41 42 3.953612 CCACTTGTCAGCTCTCTCTATCT 59.046 47.826 0.00 0.00 0.00 1.98
42 43 4.036734 CCACTTGTCAGCTCTCTCTATCTC 59.963 50.000 0.00 0.00 0.00 2.75
43 44 4.639755 CACTTGTCAGCTCTCTCTATCTCA 59.360 45.833 0.00 0.00 0.00 3.27
44 45 4.640201 ACTTGTCAGCTCTCTCTATCTCAC 59.360 45.833 0.00 0.00 0.00 3.51
45 46 4.227864 TGTCAGCTCTCTCTATCTCACA 57.772 45.455 0.00 0.00 0.00 3.58
46 47 4.593956 TGTCAGCTCTCTCTATCTCACAA 58.406 43.478 0.00 0.00 0.00 3.33
47 48 5.199723 TGTCAGCTCTCTCTATCTCACAAT 58.800 41.667 0.00 0.00 0.00 2.71
48 49 5.067544 TGTCAGCTCTCTCTATCTCACAATG 59.932 44.000 0.00 0.00 0.00 2.82
49 50 5.299028 GTCAGCTCTCTCTATCTCACAATGA 59.701 44.000 0.00 0.00 0.00 2.57
50 51 6.016024 GTCAGCTCTCTCTATCTCACAATGAT 60.016 42.308 0.00 0.00 0.00 2.45
51 52 7.174772 GTCAGCTCTCTCTATCTCACAATGATA 59.825 40.741 0.00 0.00 0.00 2.15
52 53 7.723172 TCAGCTCTCTCTATCTCACAATGATAA 59.277 37.037 0.00 0.00 0.00 1.75
53 54 8.358895 CAGCTCTCTCTATCTCACAATGATAAA 58.641 37.037 0.00 0.00 0.00 1.40
54 55 9.092338 AGCTCTCTCTATCTCACAATGATAAAT 57.908 33.333 0.00 0.00 0.00 1.40
55 56 9.142515 GCTCTCTCTATCTCACAATGATAAATG 57.857 37.037 0.00 0.00 0.00 2.32
57 58 9.978044 TCTCTCTATCTCACAATGATAAATGTG 57.022 33.333 0.00 0.00 46.44 3.21
58 59 9.205719 CTCTCTATCTCACAATGATAAATGTGG 57.794 37.037 0.00 0.00 45.41 4.17
59 60 8.927411 TCTCTATCTCACAATGATAAATGTGGA 58.073 33.333 0.00 0.00 45.41 4.02
60 61 8.893219 TCTATCTCACAATGATAAATGTGGAC 57.107 34.615 0.00 0.00 45.41 4.02
61 62 6.949352 ATCTCACAATGATAAATGTGGACC 57.051 37.500 0.00 0.00 45.41 4.46
62 63 5.192927 TCTCACAATGATAAATGTGGACCC 58.807 41.667 0.00 0.00 45.41 4.46
63 64 4.277476 TCACAATGATAAATGTGGACCCC 58.723 43.478 0.00 0.00 45.41 4.95
64 65 4.022603 CACAATGATAAATGTGGACCCCA 58.977 43.478 0.00 0.00 42.46 4.96
73 74 3.574952 TGGACCCCACTTGTCAGG 58.425 61.111 0.00 0.00 34.36 3.86
74 75 1.074090 TGGACCCCACTTGTCAGGA 60.074 57.895 0.00 0.00 34.36 3.86
75 76 1.127567 TGGACCCCACTTGTCAGGAG 61.128 60.000 0.00 0.00 34.36 3.69
76 77 1.128188 GGACCCCACTTGTCAGGAGT 61.128 60.000 0.00 0.00 34.36 3.85
77 78 1.640917 GACCCCACTTGTCAGGAGTA 58.359 55.000 0.00 0.00 32.91 2.59
78 79 1.975680 GACCCCACTTGTCAGGAGTAA 59.024 52.381 0.00 0.00 32.91 2.24
79 80 1.978580 ACCCCACTTGTCAGGAGTAAG 59.021 52.381 0.00 0.00 0.00 2.34
80 81 1.339151 CCCCACTTGTCAGGAGTAAGC 60.339 57.143 0.00 0.00 0.00 3.09
81 82 1.347707 CCCACTTGTCAGGAGTAAGCA 59.652 52.381 0.00 0.00 0.00 3.91
82 83 2.224523 CCCACTTGTCAGGAGTAAGCAA 60.225 50.000 0.00 0.00 0.00 3.91
83 84 3.070018 CCACTTGTCAGGAGTAAGCAAG 58.930 50.000 0.00 0.00 41.40 4.01
84 85 2.481952 CACTTGTCAGGAGTAAGCAAGC 59.518 50.000 0.00 0.00 39.86 4.01
85 86 1.728971 CTTGTCAGGAGTAAGCAAGCG 59.271 52.381 0.00 0.00 31.72 4.68
86 87 0.966179 TGTCAGGAGTAAGCAAGCGA 59.034 50.000 0.00 0.00 0.00 4.93
87 88 1.343142 TGTCAGGAGTAAGCAAGCGAA 59.657 47.619 0.00 0.00 0.00 4.70
88 89 2.028112 TGTCAGGAGTAAGCAAGCGAAT 60.028 45.455 0.00 0.00 0.00 3.34
89 90 3.194755 TGTCAGGAGTAAGCAAGCGAATA 59.805 43.478 0.00 0.00 0.00 1.75
90 91 4.181578 GTCAGGAGTAAGCAAGCGAATAA 58.818 43.478 0.00 0.00 0.00 1.40
91 92 4.811557 GTCAGGAGTAAGCAAGCGAATAAT 59.188 41.667 0.00 0.00 0.00 1.28
92 93 5.294552 GTCAGGAGTAAGCAAGCGAATAATT 59.705 40.000 0.00 0.00 0.00 1.40
93 94 5.880332 TCAGGAGTAAGCAAGCGAATAATTT 59.120 36.000 0.00 0.00 0.00 1.82
94 95 6.374333 TCAGGAGTAAGCAAGCGAATAATTTT 59.626 34.615 0.00 0.00 0.00 1.82
95 96 7.551262 TCAGGAGTAAGCAAGCGAATAATTTTA 59.449 33.333 0.00 0.00 0.00 1.52
96 97 7.852945 CAGGAGTAAGCAAGCGAATAATTTTAG 59.147 37.037 0.00 0.00 0.00 1.85
97 98 7.769044 AGGAGTAAGCAAGCGAATAATTTTAGA 59.231 33.333 0.00 0.00 0.00 2.10
98 99 8.064814 GGAGTAAGCAAGCGAATAATTTTAGAG 58.935 37.037 0.00 0.00 0.00 2.43
99 100 8.718102 AGTAAGCAAGCGAATAATTTTAGAGA 57.282 30.769 0.00 0.00 0.00 3.10
100 101 9.162764 AGTAAGCAAGCGAATAATTTTAGAGAA 57.837 29.630 0.00 0.00 0.00 2.87
101 102 9.769093 GTAAGCAAGCGAATAATTTTAGAGAAA 57.231 29.630 0.00 0.00 0.00 2.52
103 104 9.860898 AAGCAAGCGAATAATTTTAGAGAAAAT 57.139 25.926 0.00 0.00 45.30 1.82
118 119 8.964476 TTAGAGAAAATAAGAATGCTACTGGG 57.036 34.615 0.00 0.00 0.00 4.45
119 120 7.200434 AGAGAAAATAAGAATGCTACTGGGA 57.800 36.000 0.00 0.00 0.00 4.37
120 121 7.810260 AGAGAAAATAAGAATGCTACTGGGAT 58.190 34.615 0.00 0.00 0.00 3.85
121 122 7.936301 AGAGAAAATAAGAATGCTACTGGGATC 59.064 37.037 0.00 0.00 0.00 3.36
122 123 7.577303 AGAAAATAAGAATGCTACTGGGATCA 58.423 34.615 0.00 0.00 0.00 2.92
123 124 8.055181 AGAAAATAAGAATGCTACTGGGATCAA 58.945 33.333 0.00 0.00 0.00 2.57
124 125 7.814264 AAATAAGAATGCTACTGGGATCAAG 57.186 36.000 0.00 0.00 0.00 3.02
125 126 4.851639 AAGAATGCTACTGGGATCAAGT 57.148 40.909 5.70 5.70 0.00 3.16
126 127 4.148128 AGAATGCTACTGGGATCAAGTG 57.852 45.455 9.86 2.99 0.00 3.16
127 128 3.118112 AGAATGCTACTGGGATCAAGTGG 60.118 47.826 9.86 8.26 0.00 4.00
128 129 0.911769 TGCTACTGGGATCAAGTGGG 59.088 55.000 9.86 5.00 0.00 4.61
129 130 1.204146 GCTACTGGGATCAAGTGGGA 58.796 55.000 9.86 0.00 0.00 4.37
130 131 1.134371 GCTACTGGGATCAAGTGGGAC 60.134 57.143 9.86 0.00 0.00 4.46
131 132 1.486726 CTACTGGGATCAAGTGGGACC 59.513 57.143 9.86 0.00 0.00 4.46
132 133 1.208165 ACTGGGATCAAGTGGGACCC 61.208 60.000 2.45 2.45 40.79 4.46
133 134 1.151699 TGGGATCAAGTGGGACCCA 60.152 57.895 9.95 9.95 46.74 4.51
146 147 4.726035 TGGGACCCACACTTTATTGTAA 57.274 40.909 9.95 0.00 0.00 2.41
147 148 5.263872 TGGGACCCACACTTTATTGTAAT 57.736 39.130 9.95 0.00 0.00 1.89
148 149 5.013547 TGGGACCCACACTTTATTGTAATG 58.986 41.667 9.95 0.00 0.00 1.90
149 150 5.222151 TGGGACCCACACTTTATTGTAATGA 60.222 40.000 9.95 0.00 0.00 2.57
150 151 5.357032 GGGACCCACACTTTATTGTAATGAG 59.643 44.000 5.33 0.00 0.00 2.90
151 152 6.177610 GGACCCACACTTTATTGTAATGAGA 58.822 40.000 0.00 0.00 0.00 3.27
152 153 6.828785 GGACCCACACTTTATTGTAATGAGAT 59.171 38.462 0.00 0.00 0.00 2.75
153 154 7.990886 GGACCCACACTTTATTGTAATGAGATA 59.009 37.037 0.00 0.00 0.00 1.98
154 155 8.964476 ACCCACACTTTATTGTAATGAGATAG 57.036 34.615 0.00 0.00 0.00 2.08
155 156 8.768397 ACCCACACTTTATTGTAATGAGATAGA 58.232 33.333 0.00 0.00 0.00 1.98
156 157 9.265901 CCCACACTTTATTGTAATGAGATAGAG 57.734 37.037 0.00 0.00 0.00 2.43
157 158 9.265901 CCACACTTTATTGTAATGAGATAGAGG 57.734 37.037 0.00 0.00 0.00 3.69
158 159 9.265901 CACACTTTATTGTAATGAGATAGAGGG 57.734 37.037 0.00 0.00 0.00 4.30
159 160 9.213777 ACACTTTATTGTAATGAGATAGAGGGA 57.786 33.333 0.00 0.00 0.00 4.20
160 161 9.703892 CACTTTATTGTAATGAGATAGAGGGAG 57.296 37.037 0.00 0.00 0.00 4.30
161 162 9.661954 ACTTTATTGTAATGAGATAGAGGGAGA 57.338 33.333 0.00 0.00 0.00 3.71
163 164 6.603940 ATTGTAATGAGATAGAGGGAGAGC 57.396 41.667 0.00 0.00 0.00 4.09
164 165 5.332106 TGTAATGAGATAGAGGGAGAGCT 57.668 43.478 0.00 0.00 0.00 4.09
165 166 6.455690 TGTAATGAGATAGAGGGAGAGCTA 57.544 41.667 0.00 0.00 0.00 3.32
166 167 6.853490 TGTAATGAGATAGAGGGAGAGCTAA 58.147 40.000 0.00 0.00 0.00 3.09
167 168 6.717540 TGTAATGAGATAGAGGGAGAGCTAAC 59.282 42.308 0.00 0.00 0.00 2.34
168 169 4.797912 TGAGATAGAGGGAGAGCTAACA 57.202 45.455 0.00 0.00 0.00 2.41
169 170 5.332106 TGAGATAGAGGGAGAGCTAACAT 57.668 43.478 0.00 0.00 0.00 2.71
170 171 5.076182 TGAGATAGAGGGAGAGCTAACATG 58.924 45.833 0.00 0.00 0.00 3.21
171 172 5.073437 AGATAGAGGGAGAGCTAACATGT 57.927 43.478 0.00 0.00 0.00 3.21
172 173 5.463154 AGATAGAGGGAGAGCTAACATGTT 58.537 41.667 16.68 16.68 0.00 2.71
173 174 3.902881 AGAGGGAGAGCTAACATGTTG 57.097 47.619 21.42 11.79 0.00 3.33
174 175 3.177228 AGAGGGAGAGCTAACATGTTGT 58.823 45.455 21.42 5.51 0.00 3.32
175 176 3.584848 AGAGGGAGAGCTAACATGTTGTT 59.415 43.478 21.42 8.96 43.88 2.83
176 177 3.935828 GAGGGAGAGCTAACATGTTGTTC 59.064 47.826 21.42 16.42 40.22 3.18
177 178 3.584848 AGGGAGAGCTAACATGTTGTTCT 59.415 43.478 21.42 20.20 40.22 3.01
178 179 4.777896 AGGGAGAGCTAACATGTTGTTCTA 59.222 41.667 21.42 0.00 40.22 2.10
179 180 5.426833 AGGGAGAGCTAACATGTTGTTCTAT 59.573 40.000 21.42 11.55 40.22 1.98
180 181 6.611642 AGGGAGAGCTAACATGTTGTTCTATA 59.388 38.462 21.42 0.00 40.22 1.31
181 182 6.926272 GGGAGAGCTAACATGTTGTTCTATAG 59.074 42.308 21.42 9.43 40.22 1.31
182 183 6.926272 GGAGAGCTAACATGTTGTTCTATAGG 59.074 42.308 21.42 1.69 40.22 2.57
183 184 7.418025 GGAGAGCTAACATGTTGTTCTATAGGT 60.418 40.741 21.42 13.35 40.22 3.08
184 185 8.534954 AGAGCTAACATGTTGTTCTATAGGTA 57.465 34.615 21.42 0.00 40.22 3.08
185 186 9.148879 AGAGCTAACATGTTGTTCTATAGGTAT 57.851 33.333 21.42 8.38 40.22 2.73
186 187 9.765795 GAGCTAACATGTTGTTCTATAGGTATT 57.234 33.333 21.42 0.00 40.22 1.89
215 216 7.389803 TCATTATGACATGACAAACGGAATT 57.610 32.000 0.00 0.00 0.00 2.17
216 217 7.825681 TCATTATGACATGACAAACGGAATTT 58.174 30.769 0.00 0.00 0.00 1.82
227 228 4.853924 AAACGGAATTTGAGCTGACAAT 57.146 36.364 0.00 0.00 0.00 2.71
228 229 5.957842 AAACGGAATTTGAGCTGACAATA 57.042 34.783 0.00 0.00 0.00 1.90
229 230 5.957842 AACGGAATTTGAGCTGACAATAA 57.042 34.783 0.00 0.00 0.00 1.40
230 231 6.515272 AACGGAATTTGAGCTGACAATAAT 57.485 33.333 0.00 0.00 0.00 1.28
231 232 5.883661 ACGGAATTTGAGCTGACAATAATG 58.116 37.500 0.00 0.00 0.00 1.90
232 233 5.163622 ACGGAATTTGAGCTGACAATAATGG 60.164 40.000 0.00 0.00 0.00 3.16
233 234 5.163622 CGGAATTTGAGCTGACAATAATGGT 60.164 40.000 0.00 0.00 0.00 3.55
234 235 6.038356 GGAATTTGAGCTGACAATAATGGTG 58.962 40.000 0.00 0.00 0.00 4.17
235 236 6.350445 GGAATTTGAGCTGACAATAATGGTGT 60.350 38.462 0.00 0.00 0.00 4.16
236 237 6.594788 ATTTGAGCTGACAATAATGGTGTT 57.405 33.333 0.00 0.00 0.00 3.32
237 238 5.627499 TTGAGCTGACAATAATGGTGTTC 57.373 39.130 0.00 0.00 0.00 3.18
238 239 4.650734 TGAGCTGACAATAATGGTGTTCA 58.349 39.130 0.00 0.00 0.00 3.18
239 240 4.696877 TGAGCTGACAATAATGGTGTTCAG 59.303 41.667 0.00 0.00 32.23 3.02
240 241 4.655963 AGCTGACAATAATGGTGTTCAGT 58.344 39.130 0.00 0.00 31.95 3.41
241 242 4.456911 AGCTGACAATAATGGTGTTCAGTG 59.543 41.667 0.00 0.00 31.95 3.66
242 243 4.379813 GCTGACAATAATGGTGTTCAGTGG 60.380 45.833 0.00 0.00 31.95 4.00
243 244 3.505680 TGACAATAATGGTGTTCAGTGGC 59.494 43.478 0.00 0.00 0.00 5.01
244 245 3.495331 ACAATAATGGTGTTCAGTGGCA 58.505 40.909 0.00 0.00 0.00 4.92
245 246 4.088634 ACAATAATGGTGTTCAGTGGCAT 58.911 39.130 0.00 0.00 0.00 4.40
246 247 4.527816 ACAATAATGGTGTTCAGTGGCATT 59.472 37.500 0.00 0.00 0.00 3.56
247 248 5.011943 ACAATAATGGTGTTCAGTGGCATTT 59.988 36.000 0.00 0.00 0.00 2.32
248 249 5.743636 ATAATGGTGTTCAGTGGCATTTT 57.256 34.783 0.00 0.00 0.00 1.82
249 250 4.420522 AATGGTGTTCAGTGGCATTTTT 57.579 36.364 0.00 0.00 0.00 1.94
275 276 3.014856 GCCTAACGAAGCGATGGC 58.985 61.111 0.00 0.00 40.37 4.40
276 277 1.813753 GCCTAACGAAGCGATGGCA 60.814 57.895 1.50 0.00 43.41 4.92
277 278 1.160329 GCCTAACGAAGCGATGGCAT 61.160 55.000 0.00 0.00 43.41 4.40
278 279 1.299541 CCTAACGAAGCGATGGCATT 58.700 50.000 0.00 0.00 43.41 3.56
279 280 1.670811 CCTAACGAAGCGATGGCATTT 59.329 47.619 0.00 0.00 43.41 2.32
280 281 2.097466 CCTAACGAAGCGATGGCATTTT 59.903 45.455 0.00 0.00 43.41 1.82
281 282 2.723124 AACGAAGCGATGGCATTTTT 57.277 40.000 0.00 0.00 43.41 1.94
282 283 1.981254 ACGAAGCGATGGCATTTTTG 58.019 45.000 0.00 3.95 43.41 2.44
283 284 1.539388 ACGAAGCGATGGCATTTTTGA 59.461 42.857 0.00 0.00 43.41 2.69
284 285 2.179589 CGAAGCGATGGCATTTTTGAG 58.820 47.619 0.00 0.00 43.41 3.02
285 286 1.922545 GAAGCGATGGCATTTTTGAGC 59.077 47.619 0.00 1.40 43.41 4.26
286 287 0.889994 AGCGATGGCATTTTTGAGCA 59.110 45.000 0.00 0.00 43.41 4.26
287 288 1.135199 AGCGATGGCATTTTTGAGCAG 60.135 47.619 0.00 0.00 43.41 4.24
288 289 1.403249 GCGATGGCATTTTTGAGCAGT 60.403 47.619 0.00 0.00 39.62 4.40
289 290 2.927871 GCGATGGCATTTTTGAGCAGTT 60.928 45.455 0.00 0.00 39.62 3.16
290 291 2.664568 CGATGGCATTTTTGAGCAGTTG 59.335 45.455 0.00 0.00 0.00 3.16
291 292 2.529780 TGGCATTTTTGAGCAGTTGG 57.470 45.000 0.00 0.00 0.00 3.77
292 293 2.037901 TGGCATTTTTGAGCAGTTGGA 58.962 42.857 0.00 0.00 0.00 3.53
293 294 2.433604 TGGCATTTTTGAGCAGTTGGAA 59.566 40.909 0.00 0.00 0.00 3.53
294 295 3.071312 TGGCATTTTTGAGCAGTTGGAAT 59.929 39.130 0.00 0.00 0.00 3.01
295 296 4.067192 GGCATTTTTGAGCAGTTGGAATT 58.933 39.130 0.00 0.00 0.00 2.17
296 297 4.152938 GGCATTTTTGAGCAGTTGGAATTC 59.847 41.667 0.00 0.00 0.00 2.17
297 298 4.152938 GCATTTTTGAGCAGTTGGAATTCC 59.847 41.667 18.17 18.17 0.00 3.01
298 299 5.544650 CATTTTTGAGCAGTTGGAATTCCT 58.455 37.500 24.73 3.55 36.82 3.36
299 300 6.690530 CATTTTTGAGCAGTTGGAATTCCTA 58.309 36.000 24.73 15.31 36.82 2.94
300 301 5.964958 TTTTGAGCAGTTGGAATTCCTAG 57.035 39.130 24.73 12.66 36.82 3.02
301 302 4.640771 TTGAGCAGTTGGAATTCCTAGT 57.359 40.909 24.73 17.38 36.82 2.57
302 303 3.942829 TGAGCAGTTGGAATTCCTAGTG 58.057 45.455 29.01 29.01 42.53 2.74
303 304 3.274288 GAGCAGTTGGAATTCCTAGTGG 58.726 50.000 31.81 19.86 40.82 4.00
304 305 1.745653 GCAGTTGGAATTCCTAGTGGC 59.254 52.381 31.81 23.69 40.82 5.01
305 306 2.879756 GCAGTTGGAATTCCTAGTGGCA 60.880 50.000 31.81 9.56 40.82 4.92
306 307 3.420893 CAGTTGGAATTCCTAGTGGCAA 58.579 45.455 26.92 10.57 38.15 4.52
307 308 3.826157 CAGTTGGAATTCCTAGTGGCAAA 59.174 43.478 26.92 9.93 38.15 3.68
308 309 4.280677 CAGTTGGAATTCCTAGTGGCAAAA 59.719 41.667 26.92 9.31 38.15 2.44
309 310 4.280929 AGTTGGAATTCCTAGTGGCAAAAC 59.719 41.667 24.73 16.17 36.82 2.43
310 311 3.161866 TGGAATTCCTAGTGGCAAAACC 58.838 45.455 24.73 0.00 36.82 3.27
311 312 2.163613 GGAATTCCTAGTGGCAAAACCG 59.836 50.000 17.73 0.00 43.94 4.44
312 313 2.871096 ATTCCTAGTGGCAAAACCGA 57.129 45.000 0.00 0.00 43.94 4.69
313 314 2.178912 TTCCTAGTGGCAAAACCGAG 57.821 50.000 0.00 0.00 43.94 4.63
314 315 1.053424 TCCTAGTGGCAAAACCGAGT 58.947 50.000 0.00 0.00 43.94 4.18
315 316 2.250031 TCCTAGTGGCAAAACCGAGTA 58.750 47.619 0.00 0.00 43.94 2.59
316 317 2.232941 TCCTAGTGGCAAAACCGAGTAG 59.767 50.000 0.00 0.00 43.94 2.57
317 318 2.028385 CCTAGTGGCAAAACCGAGTAGT 60.028 50.000 0.00 0.00 43.94 2.73
318 319 1.878953 AGTGGCAAAACCGAGTAGTG 58.121 50.000 0.00 0.00 43.94 2.74
319 320 1.414919 AGTGGCAAAACCGAGTAGTGA 59.585 47.619 0.00 0.00 43.94 3.41
320 321 2.158871 AGTGGCAAAACCGAGTAGTGAA 60.159 45.455 0.00 0.00 43.94 3.18
321 322 2.614983 GTGGCAAAACCGAGTAGTGAAA 59.385 45.455 0.00 0.00 43.94 2.69
322 323 2.614983 TGGCAAAACCGAGTAGTGAAAC 59.385 45.455 0.00 0.00 43.94 2.78
323 324 2.614983 GGCAAAACCGAGTAGTGAAACA 59.385 45.455 0.00 0.00 41.43 2.83
324 325 3.547413 GGCAAAACCGAGTAGTGAAACAC 60.547 47.826 0.00 0.00 41.43 3.32
325 326 3.064271 GCAAAACCGAGTAGTGAAACACA 59.936 43.478 4.75 0.00 41.43 3.72
326 327 4.785341 GCAAAACCGAGTAGTGAAACACAG 60.785 45.833 4.75 0.00 41.43 3.66
327 328 2.150397 ACCGAGTAGTGAAACACAGC 57.850 50.000 4.75 0.00 41.43 4.40
328 329 1.270147 ACCGAGTAGTGAAACACAGCC 60.270 52.381 4.75 0.00 41.43 4.85
329 330 1.270094 CCGAGTAGTGAAACACAGCCA 60.270 52.381 4.75 0.00 41.43 4.75
330 331 2.061773 CGAGTAGTGAAACACAGCCAG 58.938 52.381 4.75 0.00 41.43 4.85
331 332 2.545952 CGAGTAGTGAAACACAGCCAGT 60.546 50.000 4.75 0.00 41.43 4.00
347 348 7.701539 ACAGCCAGTGACATAAATGATAAAA 57.298 32.000 0.00 0.00 0.00 1.52
348 349 8.121305 ACAGCCAGTGACATAAATGATAAAAA 57.879 30.769 0.00 0.00 0.00 1.94
387 388 6.425721 CGTCTTACATTTGTTTACAGAGGGAA 59.574 38.462 0.00 0.00 0.00 3.97
402 403 5.012893 CAGAGGGAAAATTTGCTAAGAGGT 58.987 41.667 0.00 0.00 0.00 3.85
551 553 3.610669 CTCAGATCGCCCTCCCCG 61.611 72.222 0.00 0.00 0.00 5.73
604 613 2.746277 GCAGCGTCGGAAACCCAT 60.746 61.111 0.00 0.00 0.00 4.00
671 680 2.368878 GCCATTCCCTCCCTCCCT 60.369 66.667 0.00 0.00 0.00 4.20
683 1015 3.043404 CTCCCTACCCCTCCCCCT 61.043 72.222 0.00 0.00 0.00 4.79
685 1017 4.188511 CCCTACCCCTCCCCCTCC 62.189 77.778 0.00 0.00 0.00 4.30
686 1018 4.558884 CCTACCCCTCCCCCTCCG 62.559 77.778 0.00 0.00 0.00 4.63
698 1030 3.866582 CCTCCGCCCCAGATCCAC 61.867 72.222 0.00 0.00 0.00 4.02
699 1031 3.866582 CTCCGCCCCAGATCCACC 61.867 72.222 0.00 0.00 0.00 4.61
702 1034 4.530857 CGCCCCAGATCCACCGAC 62.531 72.222 0.00 0.00 0.00 4.79
703 1035 4.176752 GCCCCAGATCCACCGACC 62.177 72.222 0.00 0.00 0.00 4.79
1324 1937 2.675371 GCCCCGAGCCTTACCTTT 59.325 61.111 0.00 0.00 34.35 3.11
1389 2002 4.492160 TGATCCGTCGACGCTGCC 62.492 66.667 31.73 19.10 38.18 4.85
1408 2021 1.136141 CCATTAGATCGCGCTTGATGC 60.136 52.381 5.56 0.00 38.57 3.91
1462 2076 1.070289 GGATGGGTTGGTCGGATCTAC 59.930 57.143 0.00 0.00 0.00 2.59
1503 2119 8.559536 TCTTTGCTGTTTCTAGAATTGTTACTG 58.440 33.333 5.89 6.41 0.00 2.74
1541 2157 7.014711 TGCCATTTGGTTTTAATTAGTGACTGA 59.985 33.333 0.00 0.00 37.57 3.41
1592 2208 5.198965 ACGTGAATGTAGAGTAGGTGGTAT 58.801 41.667 0.00 0.00 0.00 2.73
1674 2290 1.601759 CTGGGGTGCACTCTGGTTG 60.602 63.158 18.03 0.00 0.00 3.77
1742 2358 6.017934 GCTTGAACACTGAGTGAATGTAGAAA 60.018 38.462 20.97 1.57 36.96 2.52
1744 2360 9.208022 CTTGAACACTGAGTGAATGTAGAAATA 57.792 33.333 20.97 0.00 36.96 1.40
1745 2361 8.763049 TGAACACTGAGTGAATGTAGAAATAG 57.237 34.615 20.97 0.00 36.96 1.73
1797 2537 6.151691 GCTCATTAACATTCACAAAGCTTGA 58.848 36.000 0.00 0.00 0.00 3.02
1803 2543 4.936891 ACATTCACAAAGCTTGAACTTCC 58.063 39.130 0.00 0.00 35.82 3.46
2012 2864 1.308998 GTACTTGTGTGGCTGTGCTT 58.691 50.000 0.00 0.00 0.00 3.91
2033 2885 3.857157 ACCGGGCATAATCACTATGTT 57.143 42.857 6.32 0.00 39.81 2.71
2356 3208 9.787532 TGCAATCACTTCTTTAACTATTTATGC 57.212 29.630 0.00 0.00 0.00 3.14
2449 3461 6.437928 TGTATGACAGTTTGAAACAATGCTC 58.562 36.000 11.02 2.87 0.00 4.26
2456 3468 5.116074 CAGTTTGAAACAATGCTCGTGAATC 59.884 40.000 11.02 0.00 0.00 2.52
2528 3540 8.789825 TTGTACAGAACCTTTTACTGTTTACA 57.210 30.769 0.00 0.00 43.27 2.41
2597 3609 5.008613 TCAAAACTAGCTGAACGCAAGAAAT 59.991 36.000 0.00 0.00 42.61 2.17
2603 3615 4.974591 AGCTGAACGCAAGAAATATGTTC 58.025 39.130 0.00 0.00 42.61 3.18
2605 3617 4.379394 GCTGAACGCAAGAAATATGTTCCA 60.379 41.667 1.46 0.00 38.46 3.53
2689 3701 7.944729 ATCCAGTAAAACACTCTGCATATTT 57.055 32.000 0.00 0.00 34.26 1.40
2696 3708 7.944729 AAAACACTCTGCATATTTGTAGGAT 57.055 32.000 1.75 0.00 36.35 3.24
2770 3782 8.593679 TGAGAAATGTCAATTGAAGGTCTAGTA 58.406 33.333 10.35 0.00 0.00 1.82
2881 3893 3.017442 GGAAGTTGATACTTTGAGGGGC 58.983 50.000 0.00 0.00 44.51 5.80
2986 3998 1.212751 GGATGCCACAAAGCGAACC 59.787 57.895 0.00 0.00 34.65 3.62
3178 4190 4.717280 AGATTCCTCCGGTTCTTTGAGTAT 59.283 41.667 0.00 0.00 0.00 2.12
3289 4301 5.051816 CCAACTGAAAATGCTGTGTTGATT 58.948 37.500 0.00 0.00 37.53 2.57
3295 4307 2.624316 ATGCTGTGTTGATTTGCTCG 57.376 45.000 0.00 0.00 0.00 5.03
3337 4349 7.716560 TCATATGATCTGTACATTGTTCCCAAG 59.283 37.037 0.00 0.00 33.17 3.61
4758 5770 0.319641 GAAGGTGAAGCGAACGAGGT 60.320 55.000 0.00 0.00 0.00 3.85
4765 5780 2.511600 GCGAACGAGGTGGATGGG 60.512 66.667 0.00 0.00 0.00 4.00
4808 5826 4.012374 TGAAGATCTGGAATTGCCTGAAC 58.988 43.478 0.00 0.00 46.16 3.18
4966 5984 0.957395 CAATGAGGTTGCTCAGCCGT 60.957 55.000 0.00 0.00 36.73 5.68
5191 6209 1.317613 CAGCCTACAAAGCCACAACA 58.682 50.000 0.00 0.00 0.00 3.33
5233 6251 3.367395 CGCTGAGACAGTTCCTCAACATA 60.367 47.826 0.00 0.00 39.83 2.29
5705 6723 0.538118 CGGATCCCGGTTTGTTCCTA 59.462 55.000 6.06 0.00 44.15 2.94
5706 6724 1.065998 CGGATCCCGGTTTGTTCCTAA 60.066 52.381 6.06 0.00 44.15 2.69
5790 6808 3.399234 TGTGCTCCCCTACACAGAT 57.601 52.632 0.00 0.00 41.67 2.90
5922 6941 8.574251 AAGCATAATAGTACATGGTTTTGTCA 57.426 30.769 0.00 0.00 39.21 3.58
5960 6982 6.796648 ACTTCTTCTATCTCTCTATACCCCC 58.203 44.000 0.00 0.00 0.00 5.40
5966 6988 6.379579 TCTATCTCTCTATACCCCCGTTTTT 58.620 40.000 0.00 0.00 0.00 1.94
5988 7010 2.113860 TGCCTTGAGGATGCTGTTAC 57.886 50.000 0.06 0.00 37.39 2.50
6003 7026 5.491070 TGCTGTTACATGCTTGAGACTTAT 58.509 37.500 6.60 0.00 0.00 1.73
6059 7083 6.345329 CGTTGATGTATCATAGTTTCGCTCAG 60.345 42.308 0.00 0.00 36.56 3.35
6069 7093 7.548097 TCATAGTTTCGCTCAGAGTTAGATTT 58.452 34.615 0.00 0.00 0.00 2.17
6071 7095 8.660373 CATAGTTTCGCTCAGAGTTAGATTTTT 58.340 33.333 0.00 0.00 0.00 1.94
6072 7096 6.892691 AGTTTCGCTCAGAGTTAGATTTTTG 58.107 36.000 0.00 0.00 0.00 2.44
6085 7109 9.515020 GAGTTAGATTTTTGTTGTTGATGTCAA 57.485 29.630 0.00 0.00 0.00 3.18
6090 7114 9.301153 AGATTTTTGTTGTTGATGTCAAGTTAC 57.699 29.630 0.00 0.00 36.39 2.50
6091 7115 8.994429 ATTTTTGTTGTTGATGTCAAGTTACA 57.006 26.923 0.00 0.00 36.39 2.41
6092 7116 8.994429 TTTTTGTTGTTGATGTCAAGTTACAT 57.006 26.923 0.00 0.00 42.75 2.29
6093 7117 7.984002 TTTGTTGTTGATGTCAAGTTACATG 57.016 32.000 0.00 0.00 40.17 3.21
6094 7118 6.691754 TGTTGTTGATGTCAAGTTACATGT 57.308 33.333 2.69 2.69 40.17 3.21
6095 7119 6.493978 TGTTGTTGATGTCAAGTTACATGTG 58.506 36.000 9.11 0.00 40.17 3.21
6096 7120 6.317391 TGTTGTTGATGTCAAGTTACATGTGA 59.683 34.615 9.11 0.00 40.17 3.58
6123 7147 7.615582 TGTGAGATAGAAAACTTTGCCTATG 57.384 36.000 0.00 0.00 0.00 2.23
6136 7160 1.473677 TGCCTATGCATGAAGTTGTGC 59.526 47.619 10.16 0.00 44.23 4.57
6137 7161 1.747355 GCCTATGCATGAAGTTGTGCT 59.253 47.619 10.16 1.30 41.78 4.40
6138 7162 2.945008 GCCTATGCATGAAGTTGTGCTA 59.055 45.455 10.16 0.15 41.78 3.49
6139 7163 3.567164 GCCTATGCATGAAGTTGTGCTAT 59.433 43.478 10.16 6.00 41.78 2.97
6140 7164 4.320057 GCCTATGCATGAAGTTGTGCTATC 60.320 45.833 10.16 0.00 41.78 2.08
6141 7165 4.214971 CCTATGCATGAAGTTGTGCTATCC 59.785 45.833 10.16 0.00 41.78 2.59
6142 7166 3.070476 TGCATGAAGTTGTGCTATCCA 57.930 42.857 0.00 0.00 41.78 3.41
6143 7167 2.749076 TGCATGAAGTTGTGCTATCCAC 59.251 45.455 0.00 0.00 44.90 4.02
6149 7173 4.021807 TGAAGTTGTGCTATCCACGAGTTA 60.022 41.667 4.27 0.00 46.67 2.24
6150 7174 4.243270 AAGTTGTGCTATCCACGAGTTAC 58.757 43.478 0.00 0.00 45.49 2.50
6151 7175 4.021368 AAGTTGTGCTATCCACGAGTTACT 60.021 41.667 0.00 0.00 45.49 2.24
6152 7176 5.510861 AAGTTGTGCTATCCACGAGTTACTT 60.511 40.000 0.00 0.00 45.49 2.24
6153 7177 6.294899 AAGTTGTGCTATCCACGAGTTACTTA 60.295 38.462 0.00 0.00 45.49 2.24
6154 7178 8.053247 AAGTTGTGCTATCCACGAGTTACTTAG 61.053 40.741 0.00 0.00 45.49 2.18
6155 7179 5.246145 GTGCTATCCACGAGTTACTTAGT 57.754 43.478 0.00 0.00 34.22 2.24
6156 7180 6.369059 GTGCTATCCACGAGTTACTTAGTA 57.631 41.667 0.00 0.00 34.22 1.82
6157 7181 6.428799 GTGCTATCCACGAGTTACTTAGTAG 58.571 44.000 0.00 0.00 34.22 2.57
6158 7182 6.038050 GTGCTATCCACGAGTTACTTAGTAGT 59.962 42.308 0.00 0.00 35.05 2.73
6159 7183 6.600822 TGCTATCCACGAGTTACTTAGTAGTT 59.399 38.462 0.00 0.00 35.78 2.24
6160 7184 7.770433 TGCTATCCACGAGTTACTTAGTAGTTA 59.230 37.037 0.00 0.00 35.78 2.24
6161 7185 8.616076 GCTATCCACGAGTTACTTAGTAGTTAA 58.384 37.037 0.00 0.00 35.78 2.01
6163 7187 8.798859 ATCCACGAGTTACTTAGTAGTTAAGA 57.201 34.615 0.00 0.00 41.10 2.10
6164 7188 8.798859 TCCACGAGTTACTTAGTAGTTAAGAT 57.201 34.615 0.00 0.00 41.10 2.40
6165 7189 9.890629 TCCACGAGTTACTTAGTAGTTAAGATA 57.109 33.333 0.00 0.00 41.10 1.98
6192 7216 8.940768 TTTTTCATTGACCAAAAGAAGTTAGG 57.059 30.769 0.00 0.00 0.00 2.69
6193 7217 7.889873 TTTCATTGACCAAAAGAAGTTAGGA 57.110 32.000 0.00 0.00 0.00 2.94
6194 7218 8.477419 TTTCATTGACCAAAAGAAGTTAGGAT 57.523 30.769 0.00 0.00 0.00 3.24
6195 7219 7.452880 TCATTGACCAAAAGAAGTTAGGATG 57.547 36.000 0.00 0.00 0.00 3.51
6196 7220 5.705609 TTGACCAAAAGAAGTTAGGATGC 57.294 39.130 0.00 0.00 0.00 3.91
6197 7221 4.985538 TGACCAAAAGAAGTTAGGATGCT 58.014 39.130 0.00 0.00 0.00 3.79
6198 7222 4.761739 TGACCAAAAGAAGTTAGGATGCTG 59.238 41.667 0.00 0.00 0.00 4.41
6199 7223 4.985538 ACCAAAAGAAGTTAGGATGCTGA 58.014 39.130 0.00 0.00 0.00 4.26
6200 7224 5.574188 ACCAAAAGAAGTTAGGATGCTGAT 58.426 37.500 0.00 0.00 0.00 2.90
6201 7225 6.012745 ACCAAAAGAAGTTAGGATGCTGATT 58.987 36.000 0.00 0.00 0.00 2.57
6202 7226 7.175104 ACCAAAAGAAGTTAGGATGCTGATTA 58.825 34.615 0.00 0.00 0.00 1.75
6203 7227 7.669722 ACCAAAAGAAGTTAGGATGCTGATTAA 59.330 33.333 0.00 0.00 0.00 1.40
6204 7228 8.186821 CCAAAAGAAGTTAGGATGCTGATTAAG 58.813 37.037 0.00 0.00 0.00 1.85
6205 7229 8.734386 CAAAAGAAGTTAGGATGCTGATTAAGT 58.266 33.333 0.00 0.00 0.00 2.24
6206 7230 8.499403 AAAGAAGTTAGGATGCTGATTAAGTC 57.501 34.615 0.00 0.00 0.00 3.01
6207 7231 6.587273 AGAAGTTAGGATGCTGATTAAGTCC 58.413 40.000 0.00 0.00 0.00 3.85
6208 7232 5.297569 AGTTAGGATGCTGATTAAGTCCC 57.702 43.478 0.00 0.00 0.00 4.46
6209 7233 4.971924 AGTTAGGATGCTGATTAAGTCCCT 59.028 41.667 0.00 0.00 0.00 4.20
6210 7234 6.143915 AGTTAGGATGCTGATTAAGTCCCTA 58.856 40.000 0.00 0.00 0.00 3.53
6211 7235 6.615726 AGTTAGGATGCTGATTAAGTCCCTAA 59.384 38.462 0.00 0.00 34.21 2.69
6212 7236 5.297569 AGGATGCTGATTAAGTCCCTAAC 57.702 43.478 0.00 0.00 0.00 2.34
6213 7237 4.721776 AGGATGCTGATTAAGTCCCTAACA 59.278 41.667 0.00 0.00 0.00 2.41
6214 7238 5.370880 AGGATGCTGATTAAGTCCCTAACAT 59.629 40.000 0.00 0.00 0.00 2.71
6215 7239 6.064717 GGATGCTGATTAAGTCCCTAACATT 58.935 40.000 0.00 0.00 0.00 2.71
6216 7240 6.205658 GGATGCTGATTAAGTCCCTAACATTC 59.794 42.308 0.00 0.00 0.00 2.67
6217 7241 5.116180 TGCTGATTAAGTCCCTAACATTCG 58.884 41.667 0.00 0.00 0.00 3.34
6218 7242 4.511826 GCTGATTAAGTCCCTAACATTCGG 59.488 45.833 0.00 0.00 0.00 4.30
6219 7243 5.031066 TGATTAAGTCCCTAACATTCGGG 57.969 43.478 0.00 0.00 42.05 5.14
6236 7260 3.013921 TCGGGATTTGACTATGGCAAAC 58.986 45.455 0.28 0.00 37.98 2.93
6237 7261 2.223249 CGGGATTTGACTATGGCAAACG 60.223 50.000 0.28 0.00 37.98 3.60
6240 7265 4.097892 GGGATTTGACTATGGCAAACGAAT 59.902 41.667 0.28 0.00 37.98 3.34
6273 7298 7.619050 TGGCAATTTATATTTGTTGACCATGT 58.381 30.769 0.00 0.00 0.00 3.21
6303 7328 3.575965 CTGGTAAGCATGACAAAACCC 57.424 47.619 0.00 0.00 0.00 4.11
6304 7329 3.157087 CTGGTAAGCATGACAAAACCCT 58.843 45.455 0.00 0.00 0.00 4.34
6339 7364 4.708726 ATTGCCTTGCTAGCTAAACTTG 57.291 40.909 17.23 0.00 0.00 3.16
6340 7365 3.140325 TGCCTTGCTAGCTAAACTTGT 57.860 42.857 17.23 0.00 0.00 3.16
6341 7366 3.074412 TGCCTTGCTAGCTAAACTTGTC 58.926 45.455 17.23 0.00 0.00 3.18
6342 7367 3.074412 GCCTTGCTAGCTAAACTTGTCA 58.926 45.455 17.23 0.00 0.00 3.58
6343 7368 3.691609 GCCTTGCTAGCTAAACTTGTCAT 59.308 43.478 17.23 0.00 0.00 3.06
6345 7370 4.333926 CCTTGCTAGCTAAACTTGTCATCC 59.666 45.833 17.23 0.00 0.00 3.51
6346 7371 4.826274 TGCTAGCTAAACTTGTCATCCT 57.174 40.909 17.23 0.00 0.00 3.24
6347 7372 4.759782 TGCTAGCTAAACTTGTCATCCTC 58.240 43.478 17.23 0.00 0.00 3.71
6348 7373 4.222810 TGCTAGCTAAACTTGTCATCCTCA 59.777 41.667 17.23 0.00 0.00 3.86
6349 7374 4.568760 GCTAGCTAAACTTGTCATCCTCAC 59.431 45.833 7.70 0.00 0.00 3.51
6350 7375 3.589988 AGCTAAACTTGTCATCCTCACG 58.410 45.455 0.00 0.00 0.00 4.35
6351 7376 3.006967 AGCTAAACTTGTCATCCTCACGT 59.993 43.478 0.00 0.00 0.00 4.49
6352 7377 3.368236 GCTAAACTTGTCATCCTCACGTC 59.632 47.826 0.00 0.00 0.00 4.34
6354 7379 3.685139 AACTTGTCATCCTCACGTCAT 57.315 42.857 0.00 0.00 0.00 3.06
6356 7381 4.008074 ACTTGTCATCCTCACGTCATTT 57.992 40.909 0.00 0.00 0.00 2.32
6359 7384 5.995282 ACTTGTCATCCTCACGTCATTTAAA 59.005 36.000 0.00 0.00 0.00 1.52
6360 7385 6.485313 ACTTGTCATCCTCACGTCATTTAAAA 59.515 34.615 0.00 0.00 0.00 1.52
6361 7386 6.236017 TGTCATCCTCACGTCATTTAAAAC 57.764 37.500 0.00 0.00 0.00 2.43
6362 7387 5.995282 TGTCATCCTCACGTCATTTAAAACT 59.005 36.000 0.00 0.00 0.00 2.66
6363 7388 7.156000 TGTCATCCTCACGTCATTTAAAACTA 58.844 34.615 0.00 0.00 0.00 2.24
6390 7415 3.121058 CGAAAACGTTTGAATTGCCATGG 60.121 43.478 15.46 7.63 0.00 3.66
6402 7427 0.322997 TGCCATGGTTAAACCCCGAG 60.323 55.000 14.67 0.00 37.50 4.63
6408 7433 0.321034 GGTTAAACCCCGAGCGTTCT 60.321 55.000 0.00 0.00 30.04 3.01
6417 7442 2.561569 CCCGAGCGTTCTGGATTTATT 58.438 47.619 3.56 0.00 29.74 1.40
6422 7447 6.363473 CCGAGCGTTCTGGATTTATTATTTC 58.637 40.000 4.59 0.00 0.00 2.17
6425 7450 7.042725 CGAGCGTTCTGGATTTATTATTTCTGA 60.043 37.037 0.00 0.00 0.00 3.27
6522 7547 4.579869 AGTGTCAACTGTCAAGTCTGTTT 58.420 39.130 0.00 0.00 34.77 2.83
6523 7548 5.003804 AGTGTCAACTGTCAAGTCTGTTTT 58.996 37.500 0.00 0.00 34.77 2.43
6524 7549 5.473504 AGTGTCAACTGTCAAGTCTGTTTTT 59.526 36.000 0.00 0.00 34.77 1.94
6555 7582 7.438459 GTGTAAGTGTCAAGTCTGTTAACTCAT 59.562 37.037 7.22 0.00 0.00 2.90
6568 7595 5.830912 TGTTAACTCATTGGCTTCAGTTTG 58.169 37.500 7.22 0.00 31.52 2.93
6613 7662 4.260538 CCATTCATTCGCTTAGCTCTTGTC 60.261 45.833 1.76 0.00 0.00 3.18
6633 7682 3.272334 CCGCAGGCCGATTAGTGC 61.272 66.667 0.00 0.00 46.14 4.40
6639 7688 1.600957 CAGGCCGATTAGTGCAAGATG 59.399 52.381 0.00 0.00 0.00 2.90
6644 7693 3.797039 CCGATTAGTGCAAGATGGAGAA 58.203 45.455 0.00 0.00 0.00 2.87
6646 7695 4.818546 CCGATTAGTGCAAGATGGAGAAAT 59.181 41.667 0.00 0.00 0.00 2.17
6647 7696 5.277683 CCGATTAGTGCAAGATGGAGAAATG 60.278 44.000 0.00 0.00 0.00 2.32
6648 7697 5.277683 CGATTAGTGCAAGATGGAGAAATGG 60.278 44.000 0.00 0.00 0.00 3.16
6649 7698 2.097825 AGTGCAAGATGGAGAAATGGC 58.902 47.619 0.00 0.00 0.00 4.40
6650 7699 1.135721 GTGCAAGATGGAGAAATGGCC 59.864 52.381 0.00 0.00 0.00 5.36
6651 7700 1.006281 TGCAAGATGGAGAAATGGCCT 59.994 47.619 3.32 0.00 0.00 5.19
6681 7735 1.227497 GGCCCATGAGAAGAGCGAG 60.227 63.158 0.00 0.00 0.00 5.03
6703 7757 1.226916 TGCACAGCTGGTTTTTGCG 60.227 52.632 19.93 0.00 35.90 4.85
6709 7763 2.300066 GCTGGTTTTTGCGCGTTCC 61.300 57.895 8.43 1.23 0.00 3.62
6725 7779 1.068541 GTTCCTTTTGTCCCACATCGC 60.069 52.381 0.00 0.00 0.00 4.58
6772 7826 2.303022 AGATGGGTATAAGATGGCGTGG 59.697 50.000 0.00 0.00 0.00 4.94
6773 7827 1.502690 TGGGTATAAGATGGCGTGGT 58.497 50.000 0.00 0.00 0.00 4.16
6774 7828 1.140052 TGGGTATAAGATGGCGTGGTG 59.860 52.381 0.00 0.00 0.00 4.17
6775 7829 1.414919 GGGTATAAGATGGCGTGGTGA 59.585 52.381 0.00 0.00 0.00 4.02
6778 7832 0.179045 ATAAGATGGCGTGGTGAGGC 60.179 55.000 0.00 0.00 0.00 4.70
6779 7833 1.264749 TAAGATGGCGTGGTGAGGCT 61.265 55.000 0.00 0.00 33.30 4.58
6782 7836 2.238847 GATGGCGTGGTGAGGCTACA 62.239 60.000 0.00 0.00 33.30 2.74
6784 7838 2.125512 GCGTGGTGAGGCTACAGG 60.126 66.667 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.301205 AGTGGGTATAGGGGTATTTTCGT 58.699 43.478 0.00 0.00 0.00 3.85
2 3 4.968971 AGTGGGTATAGGGGTATTTTCG 57.031 45.455 0.00 0.00 0.00 3.46
4 5 5.493250 TGACAAGTGGGTATAGGGGTATTTT 59.507 40.000 0.00 0.00 0.00 1.82
5 6 5.041015 TGACAAGTGGGTATAGGGGTATTT 58.959 41.667 0.00 0.00 0.00 1.40
6 7 4.637600 TGACAAGTGGGTATAGGGGTATT 58.362 43.478 0.00 0.00 0.00 1.89
7 8 4.232091 CTGACAAGTGGGTATAGGGGTAT 58.768 47.826 0.00 0.00 0.00 2.73
8 9 3.649843 CTGACAAGTGGGTATAGGGGTA 58.350 50.000 0.00 0.00 0.00 3.69
9 10 2.478292 CTGACAAGTGGGTATAGGGGT 58.522 52.381 0.00 0.00 0.00 4.95
11 12 2.103263 GAGCTGACAAGTGGGTATAGGG 59.897 54.545 0.00 0.00 0.00 3.53
12 13 3.034635 AGAGCTGACAAGTGGGTATAGG 58.965 50.000 0.00 0.00 0.00 2.57
14 15 3.954904 GAGAGAGCTGACAAGTGGGTATA 59.045 47.826 0.00 0.00 0.00 1.47
15 16 2.763448 GAGAGAGCTGACAAGTGGGTAT 59.237 50.000 0.00 0.00 0.00 2.73
16 17 2.171840 GAGAGAGCTGACAAGTGGGTA 58.828 52.381 0.00 0.00 0.00 3.69
17 18 0.972883 GAGAGAGCTGACAAGTGGGT 59.027 55.000 0.00 0.00 0.00 4.51
18 19 1.265236 AGAGAGAGCTGACAAGTGGG 58.735 55.000 0.00 0.00 0.00 4.61
20 21 4.639755 TGAGATAGAGAGAGCTGACAAGTG 59.360 45.833 0.00 0.00 0.00 3.16
21 22 4.640201 GTGAGATAGAGAGAGCTGACAAGT 59.360 45.833 0.00 0.00 0.00 3.16
22 23 4.639755 TGTGAGATAGAGAGAGCTGACAAG 59.360 45.833 0.00 0.00 0.00 3.16
23 24 4.593956 TGTGAGATAGAGAGAGCTGACAA 58.406 43.478 0.00 0.00 0.00 3.18
24 25 4.227864 TGTGAGATAGAGAGAGCTGACA 57.772 45.455 0.00 0.00 0.00 3.58
25 26 5.299028 TCATTGTGAGATAGAGAGAGCTGAC 59.701 44.000 0.00 0.00 0.00 3.51
26 27 5.444176 TCATTGTGAGATAGAGAGAGCTGA 58.556 41.667 0.00 0.00 0.00 4.26
27 28 5.771153 TCATTGTGAGATAGAGAGAGCTG 57.229 43.478 0.00 0.00 0.00 4.24
28 29 8.476064 TTTATCATTGTGAGATAGAGAGAGCT 57.524 34.615 0.00 0.00 30.32 4.09
29 30 9.142515 CATTTATCATTGTGAGATAGAGAGAGC 57.857 37.037 0.00 0.00 30.32 4.09
31 32 9.978044 CACATTTATCATTGTGAGATAGAGAGA 57.022 33.333 0.00 0.00 44.74 3.10
32 33 9.205719 CCACATTTATCATTGTGAGATAGAGAG 57.794 37.037 4.70 0.00 44.74 3.20
33 34 8.927411 TCCACATTTATCATTGTGAGATAGAGA 58.073 33.333 4.70 0.00 44.74 3.10
34 35 8.986847 GTCCACATTTATCATTGTGAGATAGAG 58.013 37.037 4.70 0.00 44.74 2.43
35 36 7.933577 GGTCCACATTTATCATTGTGAGATAGA 59.066 37.037 4.70 0.00 44.74 1.98
36 37 7.173907 GGGTCCACATTTATCATTGTGAGATAG 59.826 40.741 4.70 0.00 44.74 2.08
37 38 6.998074 GGGTCCACATTTATCATTGTGAGATA 59.002 38.462 4.70 0.00 44.74 1.98
38 39 5.829924 GGGTCCACATTTATCATTGTGAGAT 59.170 40.000 4.70 0.00 44.74 2.75
39 40 5.192927 GGGTCCACATTTATCATTGTGAGA 58.807 41.667 4.70 0.00 44.74 3.27
40 41 4.339247 GGGGTCCACATTTATCATTGTGAG 59.661 45.833 4.70 0.00 44.74 3.51
41 42 4.264128 TGGGGTCCACATTTATCATTGTGA 60.264 41.667 4.70 0.00 44.74 3.58
42 43 4.022603 TGGGGTCCACATTTATCATTGTG 58.977 43.478 0.00 0.00 42.25 3.33
43 44 4.329638 TGGGGTCCACATTTATCATTGT 57.670 40.909 0.00 0.00 0.00 2.71
56 57 1.074090 TCCTGACAAGTGGGGTCCA 60.074 57.895 0.00 0.00 34.36 4.02
57 58 1.128188 ACTCCTGACAAGTGGGGTCC 61.128 60.000 0.00 0.00 29.66 4.46
58 59 1.640917 TACTCCTGACAAGTGGGGTC 58.359 55.000 0.00 0.00 38.19 4.46
59 60 1.978580 CTTACTCCTGACAAGTGGGGT 59.021 52.381 0.00 0.00 40.63 4.95
60 61 1.339151 GCTTACTCCTGACAAGTGGGG 60.339 57.143 0.00 0.00 0.00 4.96
61 62 1.347707 TGCTTACTCCTGACAAGTGGG 59.652 52.381 0.00 0.00 0.00 4.61
62 63 2.839486 TGCTTACTCCTGACAAGTGG 57.161 50.000 0.00 0.00 0.00 4.00
63 64 2.481952 GCTTGCTTACTCCTGACAAGTG 59.518 50.000 0.00 0.00 39.86 3.16
64 65 2.772287 GCTTGCTTACTCCTGACAAGT 58.228 47.619 0.00 0.00 39.86 3.16
65 66 1.728971 CGCTTGCTTACTCCTGACAAG 59.271 52.381 0.00 0.00 40.49 3.16
66 67 1.343142 TCGCTTGCTTACTCCTGACAA 59.657 47.619 0.00 0.00 0.00 3.18
67 68 0.966179 TCGCTTGCTTACTCCTGACA 59.034 50.000 0.00 0.00 0.00 3.58
68 69 2.080286 TTCGCTTGCTTACTCCTGAC 57.920 50.000 0.00 0.00 0.00 3.51
69 70 4.465632 TTATTCGCTTGCTTACTCCTGA 57.534 40.909 0.00 0.00 0.00 3.86
70 71 5.741388 AATTATTCGCTTGCTTACTCCTG 57.259 39.130 0.00 0.00 0.00 3.86
71 72 6.759497 AAAATTATTCGCTTGCTTACTCCT 57.241 33.333 0.00 0.00 0.00 3.69
72 73 7.916552 TCTAAAATTATTCGCTTGCTTACTCC 58.083 34.615 0.00 0.00 0.00 3.85
73 74 8.818057 TCTCTAAAATTATTCGCTTGCTTACTC 58.182 33.333 0.00 0.00 0.00 2.59
74 75 8.718102 TCTCTAAAATTATTCGCTTGCTTACT 57.282 30.769 0.00 0.00 0.00 2.24
75 76 9.769093 TTTCTCTAAAATTATTCGCTTGCTTAC 57.231 29.630 0.00 0.00 0.00 2.34
77 78 9.860898 ATTTTCTCTAAAATTATTCGCTTGCTT 57.139 25.926 0.00 0.00 41.50 3.91
92 93 9.396022 CCCAGTAGCATTCTTATTTTCTCTAAA 57.604 33.333 0.00 0.00 0.00 1.85
93 94 8.768397 TCCCAGTAGCATTCTTATTTTCTCTAA 58.232 33.333 0.00 0.00 0.00 2.10
94 95 8.319057 TCCCAGTAGCATTCTTATTTTCTCTA 57.681 34.615 0.00 0.00 0.00 2.43
95 96 7.200434 TCCCAGTAGCATTCTTATTTTCTCT 57.800 36.000 0.00 0.00 0.00 3.10
96 97 7.716998 TGATCCCAGTAGCATTCTTATTTTCTC 59.283 37.037 0.00 0.00 0.00 2.87
97 98 7.577303 TGATCCCAGTAGCATTCTTATTTTCT 58.423 34.615 0.00 0.00 0.00 2.52
98 99 7.807977 TGATCCCAGTAGCATTCTTATTTTC 57.192 36.000 0.00 0.00 0.00 2.29
99 100 7.836183 ACTTGATCCCAGTAGCATTCTTATTTT 59.164 33.333 0.00 0.00 0.00 1.82
100 101 7.284034 CACTTGATCCCAGTAGCATTCTTATTT 59.716 37.037 0.00 0.00 0.00 1.40
101 102 6.769822 CACTTGATCCCAGTAGCATTCTTATT 59.230 38.462 0.00 0.00 0.00 1.40
102 103 6.294473 CACTTGATCCCAGTAGCATTCTTAT 58.706 40.000 0.00 0.00 0.00 1.73
103 104 5.396772 CCACTTGATCCCAGTAGCATTCTTA 60.397 44.000 0.00 0.00 0.00 2.10
104 105 4.521146 CACTTGATCCCAGTAGCATTCTT 58.479 43.478 0.00 0.00 0.00 2.52
105 106 3.118112 CCACTTGATCCCAGTAGCATTCT 60.118 47.826 0.00 0.00 0.00 2.40
106 107 3.209410 CCACTTGATCCCAGTAGCATTC 58.791 50.000 0.00 0.00 0.00 2.67
107 108 2.092212 CCCACTTGATCCCAGTAGCATT 60.092 50.000 0.00 0.00 0.00 3.56
108 109 1.492176 CCCACTTGATCCCAGTAGCAT 59.508 52.381 0.00 0.00 0.00 3.79
109 110 0.911769 CCCACTTGATCCCAGTAGCA 59.088 55.000 0.00 0.00 0.00 3.49
110 111 1.134371 GTCCCACTTGATCCCAGTAGC 60.134 57.143 0.00 0.00 0.00 3.58
111 112 1.486726 GGTCCCACTTGATCCCAGTAG 59.513 57.143 0.00 0.00 0.00 2.57
112 113 1.580059 GGTCCCACTTGATCCCAGTA 58.420 55.000 0.00 0.00 0.00 2.74
113 114 1.208165 GGGTCCCACTTGATCCCAGT 61.208 60.000 1.78 0.00 38.15 4.00
114 115 1.207488 TGGGTCCCACTTGATCCCAG 61.207 60.000 6.47 0.00 42.52 4.45
115 116 1.151699 TGGGTCCCACTTGATCCCA 60.152 57.895 6.47 0.00 44.76 4.37
116 117 3.835134 TGGGTCCCACTTGATCCC 58.165 61.111 6.47 0.00 34.38 3.85
125 126 4.726035 TTACAATAAAGTGTGGGTCCCA 57.274 40.909 6.47 6.47 32.75 4.37
126 127 5.258051 TCATTACAATAAAGTGTGGGTCCC 58.742 41.667 0.00 0.00 32.75 4.46
127 128 6.177610 TCTCATTACAATAAAGTGTGGGTCC 58.822 40.000 0.00 0.00 32.75 4.46
128 129 7.865706 ATCTCATTACAATAAAGTGTGGGTC 57.134 36.000 0.00 0.00 32.75 4.46
129 130 8.768397 TCTATCTCATTACAATAAAGTGTGGGT 58.232 33.333 0.00 0.00 32.75 4.51
130 131 9.265901 CTCTATCTCATTACAATAAAGTGTGGG 57.734 37.037 0.00 0.00 32.75 4.61
131 132 9.265901 CCTCTATCTCATTACAATAAAGTGTGG 57.734 37.037 0.00 0.00 32.75 4.17
132 133 9.265901 CCCTCTATCTCATTACAATAAAGTGTG 57.734 37.037 0.00 0.00 32.75 3.82
133 134 9.213777 TCCCTCTATCTCATTACAATAAAGTGT 57.786 33.333 0.00 0.00 35.43 3.55
134 135 9.703892 CTCCCTCTATCTCATTACAATAAAGTG 57.296 37.037 0.00 0.00 0.00 3.16
135 136 9.661954 TCTCCCTCTATCTCATTACAATAAAGT 57.338 33.333 0.00 0.00 0.00 2.66
137 138 8.589338 GCTCTCCCTCTATCTCATTACAATAAA 58.411 37.037 0.00 0.00 0.00 1.40
138 139 7.952930 AGCTCTCCCTCTATCTCATTACAATAA 59.047 37.037 0.00 0.00 0.00 1.40
139 140 7.474445 AGCTCTCCCTCTATCTCATTACAATA 58.526 38.462 0.00 0.00 0.00 1.90
140 141 6.322126 AGCTCTCCCTCTATCTCATTACAAT 58.678 40.000 0.00 0.00 0.00 2.71
141 142 5.710646 AGCTCTCCCTCTATCTCATTACAA 58.289 41.667 0.00 0.00 0.00 2.41
142 143 5.332106 AGCTCTCCCTCTATCTCATTACA 57.668 43.478 0.00 0.00 0.00 2.41
143 144 6.717540 TGTTAGCTCTCCCTCTATCTCATTAC 59.282 42.308 0.00 0.00 0.00 1.89
144 145 6.853490 TGTTAGCTCTCCCTCTATCTCATTA 58.147 40.000 0.00 0.00 0.00 1.90
145 146 5.710646 TGTTAGCTCTCCCTCTATCTCATT 58.289 41.667 0.00 0.00 0.00 2.57
146 147 5.332106 TGTTAGCTCTCCCTCTATCTCAT 57.668 43.478 0.00 0.00 0.00 2.90
147 148 4.797912 TGTTAGCTCTCCCTCTATCTCA 57.202 45.455 0.00 0.00 0.00 3.27
148 149 5.076873 ACATGTTAGCTCTCCCTCTATCTC 58.923 45.833 0.00 0.00 0.00 2.75
149 150 5.073437 ACATGTTAGCTCTCCCTCTATCT 57.927 43.478 0.00 0.00 0.00 1.98
150 151 5.069781 ACAACATGTTAGCTCTCCCTCTATC 59.930 44.000 11.53 0.00 0.00 2.08
151 152 4.965532 ACAACATGTTAGCTCTCCCTCTAT 59.034 41.667 11.53 0.00 0.00 1.98
152 153 4.353777 ACAACATGTTAGCTCTCCCTCTA 58.646 43.478 11.53 0.00 0.00 2.43
153 154 3.177228 ACAACATGTTAGCTCTCCCTCT 58.823 45.455 11.53 0.00 0.00 3.69
154 155 3.618690 ACAACATGTTAGCTCTCCCTC 57.381 47.619 11.53 0.00 0.00 4.30
155 156 3.584848 AGAACAACATGTTAGCTCTCCCT 59.415 43.478 11.53 0.00 41.28 4.20
156 157 3.944087 AGAACAACATGTTAGCTCTCCC 58.056 45.455 11.53 0.00 41.28 4.30
157 158 6.926272 CCTATAGAACAACATGTTAGCTCTCC 59.074 42.308 11.53 0.00 41.28 3.71
158 159 7.493367 ACCTATAGAACAACATGTTAGCTCTC 58.507 38.462 11.53 3.90 41.28 3.20
159 160 7.425224 ACCTATAGAACAACATGTTAGCTCT 57.575 36.000 11.53 14.56 41.28 4.09
160 161 9.765795 AATACCTATAGAACAACATGTTAGCTC 57.234 33.333 11.53 8.06 41.28 4.09
191 192 7.389803 AATTCCGTTTGTCATGTCATAATGA 57.610 32.000 0.00 0.00 34.16 2.57
192 193 7.754475 TCAAATTCCGTTTGTCATGTCATAATG 59.246 33.333 0.00 0.00 45.87 1.90
193 194 7.825681 TCAAATTCCGTTTGTCATGTCATAAT 58.174 30.769 0.00 0.00 45.87 1.28
194 195 7.208225 TCAAATTCCGTTTGTCATGTCATAA 57.792 32.000 0.00 0.00 45.87 1.90
195 196 6.622679 GCTCAAATTCCGTTTGTCATGTCATA 60.623 38.462 0.00 0.00 45.87 2.15
196 197 5.702865 CTCAAATTCCGTTTGTCATGTCAT 58.297 37.500 0.00 0.00 45.87 3.06
197 198 4.556501 GCTCAAATTCCGTTTGTCATGTCA 60.557 41.667 0.00 0.00 45.87 3.58
198 199 3.914364 GCTCAAATTCCGTTTGTCATGTC 59.086 43.478 0.00 0.00 45.87 3.06
199 200 3.569701 AGCTCAAATTCCGTTTGTCATGT 59.430 39.130 0.00 0.00 45.87 3.21
200 201 3.916172 CAGCTCAAATTCCGTTTGTCATG 59.084 43.478 0.00 0.00 45.87 3.07
201 202 3.820467 TCAGCTCAAATTCCGTTTGTCAT 59.180 39.130 0.00 0.00 45.87 3.06
202 203 3.003275 GTCAGCTCAAATTCCGTTTGTCA 59.997 43.478 0.00 0.00 45.87 3.58
203 204 3.003275 TGTCAGCTCAAATTCCGTTTGTC 59.997 43.478 0.00 0.00 45.87 3.18
204 205 2.948979 TGTCAGCTCAAATTCCGTTTGT 59.051 40.909 0.00 0.00 45.87 2.83
205 206 3.624326 TGTCAGCTCAAATTCCGTTTG 57.376 42.857 0.00 0.00 46.86 2.93
206 207 4.853924 ATTGTCAGCTCAAATTCCGTTT 57.146 36.364 0.00 0.00 0.00 3.60
207 208 5.957842 TTATTGTCAGCTCAAATTCCGTT 57.042 34.783 0.00 0.00 0.00 4.44
208 209 5.163622 CCATTATTGTCAGCTCAAATTCCGT 60.164 40.000 0.00 0.00 0.00 4.69
209 210 5.163622 ACCATTATTGTCAGCTCAAATTCCG 60.164 40.000 0.00 0.00 0.00 4.30
210 211 6.038356 CACCATTATTGTCAGCTCAAATTCC 58.962 40.000 0.00 0.00 0.00 3.01
211 212 6.624423 ACACCATTATTGTCAGCTCAAATTC 58.376 36.000 0.00 0.00 0.00 2.17
212 213 6.594788 ACACCATTATTGTCAGCTCAAATT 57.405 33.333 0.00 0.00 0.00 1.82
213 214 6.209192 TGAACACCATTATTGTCAGCTCAAAT 59.791 34.615 0.00 0.00 0.00 2.32
214 215 5.534278 TGAACACCATTATTGTCAGCTCAAA 59.466 36.000 0.00 0.00 0.00 2.69
215 216 5.069318 TGAACACCATTATTGTCAGCTCAA 58.931 37.500 0.00 0.00 0.00 3.02
216 217 4.650734 TGAACACCATTATTGTCAGCTCA 58.349 39.130 0.00 0.00 0.00 4.26
217 218 4.697352 ACTGAACACCATTATTGTCAGCTC 59.303 41.667 0.00 0.00 31.08 4.09
218 219 4.456911 CACTGAACACCATTATTGTCAGCT 59.543 41.667 0.00 0.00 31.08 4.24
219 220 4.379813 CCACTGAACACCATTATTGTCAGC 60.380 45.833 0.00 0.00 31.08 4.26
220 221 4.379813 GCCACTGAACACCATTATTGTCAG 60.380 45.833 0.00 0.00 32.72 3.51
221 222 3.505680 GCCACTGAACACCATTATTGTCA 59.494 43.478 0.00 0.00 0.00 3.58
222 223 3.505680 TGCCACTGAACACCATTATTGTC 59.494 43.478 0.00 0.00 0.00 3.18
223 224 3.495331 TGCCACTGAACACCATTATTGT 58.505 40.909 0.00 0.00 0.00 2.71
224 225 4.724074 ATGCCACTGAACACCATTATTG 57.276 40.909 0.00 0.00 0.00 1.90
225 226 5.743636 AAATGCCACTGAACACCATTATT 57.256 34.783 0.00 0.00 0.00 1.40
226 227 5.743636 AAAATGCCACTGAACACCATTAT 57.256 34.783 0.00 0.00 0.00 1.28
227 228 5.543507 AAAAATGCCACTGAACACCATTA 57.456 34.783 0.00 0.00 0.00 1.90
228 229 4.420522 AAAAATGCCACTGAACACCATT 57.579 36.364 0.00 0.00 0.00 3.16
246 247 2.077627 TCGTTAGGCGCATGCTAAAAA 58.922 42.857 17.13 2.21 42.25 1.94
247 248 1.728068 TCGTTAGGCGCATGCTAAAA 58.272 45.000 17.13 1.83 42.25 1.52
248 249 1.663643 CTTCGTTAGGCGCATGCTAAA 59.336 47.619 17.13 1.46 42.25 1.85
249 250 1.286501 CTTCGTTAGGCGCATGCTAA 58.713 50.000 17.13 5.00 42.25 3.09
250 251 1.151777 GCTTCGTTAGGCGCATGCTA 61.152 55.000 17.13 0.00 42.25 3.49
251 252 2.464459 GCTTCGTTAGGCGCATGCT 61.464 57.895 17.13 0.00 42.25 3.79
252 253 2.023320 GCTTCGTTAGGCGCATGC 59.977 61.111 10.83 7.91 41.07 4.06
253 254 2.321060 CGCTTCGTTAGGCGCATG 59.679 61.111 10.83 0.00 44.64 4.06
258 259 1.160329 ATGCCATCGCTTCGTTAGGC 61.160 55.000 0.00 0.00 38.63 3.93
259 260 1.299541 AATGCCATCGCTTCGTTAGG 58.700 50.000 0.00 0.00 35.36 2.69
260 261 3.405170 AAAATGCCATCGCTTCGTTAG 57.595 42.857 0.00 0.00 35.36 2.34
261 262 3.189495 TCAAAAATGCCATCGCTTCGTTA 59.811 39.130 0.00 0.00 35.36 3.18
262 263 2.030363 TCAAAAATGCCATCGCTTCGTT 60.030 40.909 0.00 0.00 35.36 3.85
263 264 1.539388 TCAAAAATGCCATCGCTTCGT 59.461 42.857 0.00 0.00 35.36 3.85
264 265 2.179589 CTCAAAAATGCCATCGCTTCG 58.820 47.619 0.00 0.00 35.36 3.79
265 266 1.922545 GCTCAAAAATGCCATCGCTTC 59.077 47.619 0.00 0.00 35.36 3.86
266 267 1.273048 TGCTCAAAAATGCCATCGCTT 59.727 42.857 0.00 0.00 35.36 4.68
267 268 0.889994 TGCTCAAAAATGCCATCGCT 59.110 45.000 0.00 0.00 35.36 4.93
268 269 1.274596 CTGCTCAAAAATGCCATCGC 58.725 50.000 0.00 0.00 0.00 4.58
269 270 2.642139 ACTGCTCAAAAATGCCATCG 57.358 45.000 0.00 0.00 0.00 3.84
270 271 2.997986 CCAACTGCTCAAAAATGCCATC 59.002 45.455 0.00 0.00 0.00 3.51
271 272 2.633967 TCCAACTGCTCAAAAATGCCAT 59.366 40.909 0.00 0.00 0.00 4.40
272 273 2.037901 TCCAACTGCTCAAAAATGCCA 58.962 42.857 0.00 0.00 0.00 4.92
273 274 2.818130 TCCAACTGCTCAAAAATGCC 57.182 45.000 0.00 0.00 0.00 4.40
274 275 4.152938 GGAATTCCAACTGCTCAAAAATGC 59.847 41.667 20.04 0.00 35.64 3.56
275 276 5.544650 AGGAATTCCAACTGCTCAAAAATG 58.455 37.500 26.22 0.00 38.89 2.32
276 277 5.813513 AGGAATTCCAACTGCTCAAAAAT 57.186 34.783 26.22 0.00 38.89 1.82
277 278 5.833131 ACTAGGAATTCCAACTGCTCAAAAA 59.167 36.000 26.22 0.00 38.89 1.94
278 279 5.241506 CACTAGGAATTCCAACTGCTCAAAA 59.758 40.000 26.22 0.00 38.89 2.44
279 280 4.761739 CACTAGGAATTCCAACTGCTCAAA 59.238 41.667 26.22 0.00 38.89 2.69
280 281 4.326826 CACTAGGAATTCCAACTGCTCAA 58.673 43.478 26.22 0.00 38.89 3.02
281 282 3.307691 CCACTAGGAATTCCAACTGCTCA 60.308 47.826 26.22 0.41 38.89 4.26
282 283 3.274288 CCACTAGGAATTCCAACTGCTC 58.726 50.000 26.22 0.00 38.89 4.26
283 284 2.619074 GCCACTAGGAATTCCAACTGCT 60.619 50.000 26.22 7.07 38.89 4.24
284 285 1.745653 GCCACTAGGAATTCCAACTGC 59.254 52.381 26.22 16.74 38.89 4.40
285 286 3.071874 TGCCACTAGGAATTCCAACTG 57.928 47.619 26.22 15.90 38.89 3.16
286 287 3.806949 TTGCCACTAGGAATTCCAACT 57.193 42.857 26.22 8.58 38.89 3.16
287 288 4.556233 GTTTTGCCACTAGGAATTCCAAC 58.444 43.478 26.22 13.83 38.89 3.77
288 289 3.576550 GGTTTTGCCACTAGGAATTCCAA 59.423 43.478 26.22 7.14 36.31 3.53
289 290 3.161866 GGTTTTGCCACTAGGAATTCCA 58.838 45.455 26.22 11.29 36.31 3.53
290 291 2.163613 CGGTTTTGCCACTAGGAATTCC 59.836 50.000 17.31 17.31 36.89 3.01
291 292 3.078837 TCGGTTTTGCCACTAGGAATTC 58.921 45.455 0.00 0.00 36.89 2.17
292 293 3.081804 CTCGGTTTTGCCACTAGGAATT 58.918 45.455 0.00 0.00 36.89 2.17
293 294 2.039879 ACTCGGTTTTGCCACTAGGAAT 59.960 45.455 0.00 0.00 36.89 3.01
294 295 1.418637 ACTCGGTTTTGCCACTAGGAA 59.581 47.619 0.00 0.00 36.89 3.36
295 296 1.053424 ACTCGGTTTTGCCACTAGGA 58.947 50.000 0.00 0.00 36.89 2.94
296 297 2.028385 ACTACTCGGTTTTGCCACTAGG 60.028 50.000 0.00 0.00 36.97 3.02
297 298 2.993899 CACTACTCGGTTTTGCCACTAG 59.006 50.000 0.00 0.00 36.97 2.57
298 299 2.629137 TCACTACTCGGTTTTGCCACTA 59.371 45.455 0.00 0.00 36.97 2.74
299 300 1.414919 TCACTACTCGGTTTTGCCACT 59.585 47.619 0.00 0.00 36.97 4.00
300 301 1.873698 TCACTACTCGGTTTTGCCAC 58.126 50.000 0.00 0.00 36.97 5.01
301 302 2.614983 GTTTCACTACTCGGTTTTGCCA 59.385 45.455 0.00 0.00 36.97 4.92
302 303 2.614983 TGTTTCACTACTCGGTTTTGCC 59.385 45.455 0.00 0.00 0.00 4.52
303 304 3.064271 TGTGTTTCACTACTCGGTTTTGC 59.936 43.478 1.72 0.00 35.11 3.68
304 305 4.785341 GCTGTGTTTCACTACTCGGTTTTG 60.785 45.833 1.72 0.00 35.11 2.44
305 306 3.311596 GCTGTGTTTCACTACTCGGTTTT 59.688 43.478 1.72 0.00 35.11 2.43
306 307 2.870411 GCTGTGTTTCACTACTCGGTTT 59.130 45.455 1.72 0.00 35.11 3.27
307 308 2.480845 GCTGTGTTTCACTACTCGGTT 58.519 47.619 1.72 0.00 35.11 4.44
308 309 1.270147 GGCTGTGTTTCACTACTCGGT 60.270 52.381 1.72 0.00 35.11 4.69
309 310 1.270094 TGGCTGTGTTTCACTACTCGG 60.270 52.381 1.72 0.00 35.11 4.63
310 311 2.061773 CTGGCTGTGTTTCACTACTCG 58.938 52.381 1.72 0.00 35.11 4.18
311 312 2.802816 CACTGGCTGTGTTTCACTACTC 59.197 50.000 15.53 0.00 41.53 2.59
312 313 2.434336 TCACTGGCTGTGTTTCACTACT 59.566 45.455 21.64 0.00 46.27 2.57
313 314 2.544267 GTCACTGGCTGTGTTTCACTAC 59.456 50.000 21.64 8.97 46.27 2.73
314 315 2.169561 TGTCACTGGCTGTGTTTCACTA 59.830 45.455 21.64 0.53 46.27 2.74
315 316 1.065491 TGTCACTGGCTGTGTTTCACT 60.065 47.619 21.64 0.00 46.27 3.41
316 317 1.378531 TGTCACTGGCTGTGTTTCAC 58.621 50.000 21.64 13.90 46.27 3.18
317 318 2.346766 ATGTCACTGGCTGTGTTTCA 57.653 45.000 21.64 18.35 46.27 2.69
318 319 4.829064 TTTATGTCACTGGCTGTGTTTC 57.171 40.909 21.64 14.34 46.27 2.78
319 320 4.826733 TCATTTATGTCACTGGCTGTGTTT 59.173 37.500 21.64 11.56 46.27 2.83
320 321 4.397420 TCATTTATGTCACTGGCTGTGTT 58.603 39.130 21.64 11.85 46.27 3.32
321 322 4.019792 TCATTTATGTCACTGGCTGTGT 57.980 40.909 21.64 7.71 46.27 3.72
323 324 7.701539 TTTTATCATTTATGTCACTGGCTGT 57.298 32.000 0.00 0.00 0.00 4.40
358 359 8.126700 CCTCTGTAAACAAATGTAAGACGTTTT 58.873 33.333 0.00 0.00 35.31 2.43
359 360 7.255001 CCCTCTGTAAACAAATGTAAGACGTTT 60.255 37.037 0.00 0.00 37.78 3.60
360 361 6.204108 CCCTCTGTAAACAAATGTAAGACGTT 59.796 38.462 0.00 0.00 0.00 3.99
361 362 5.699458 CCCTCTGTAAACAAATGTAAGACGT 59.301 40.000 0.00 0.00 0.00 4.34
362 363 5.929992 TCCCTCTGTAAACAAATGTAAGACG 59.070 40.000 0.00 0.00 0.00 4.18
374 375 7.882179 TCTTAGCAAATTTTCCCTCTGTAAAC 58.118 34.615 0.00 0.00 0.00 2.01
493 494 1.942712 GTTGTCAGTGACGCGTCGT 60.943 57.895 31.88 20.34 45.10 4.34
496 497 2.279918 GGGTTGTCAGTGACGCGT 60.280 61.111 13.85 13.85 34.95 6.01
497 498 3.403057 CGGGTTGTCAGTGACGCG 61.403 66.667 18.17 3.53 43.81 6.01
498 499 3.041940 CCGGGTTGTCAGTGACGC 61.042 66.667 18.17 12.97 34.95 5.19
499 500 2.357034 CCCGGGTTGTCAGTGACG 60.357 66.667 14.18 5.97 34.95 4.35
500 501 2.668550 GCCCGGGTTGTCAGTGAC 60.669 66.667 24.63 16.68 0.00 3.67
501 502 4.308458 CGCCCGGGTTGTCAGTGA 62.308 66.667 24.63 0.00 0.00 3.41
551 553 3.564027 CGCCGCCGTTGGATTCTC 61.564 66.667 0.00 0.00 0.00 2.87
604 613 2.109128 AGATCTCGGGCAAGAGGAGATA 59.891 50.000 8.93 0.00 45.06 1.98
685 1017 4.530857 GTCGGTGGATCTGGGGCG 62.531 72.222 0.00 0.00 0.00 6.13
686 1018 4.176752 GGTCGGTGGATCTGGGGC 62.177 72.222 0.00 0.00 0.00 5.80
1324 1937 2.586245 CGCAGAGCCTCCAATCCA 59.414 61.111 0.00 0.00 0.00 3.41
1389 2002 2.223285 GCATCAAGCGCGATCTAATG 57.777 50.000 12.10 9.81 0.00 1.90
1462 2076 7.081526 ACAGCAAAGATCATAAAGTAAGCAG 57.918 36.000 0.00 0.00 0.00 4.24
1503 2119 2.505364 AAATGGCACCTGAGGCTCCC 62.505 60.000 12.86 5.91 34.73 4.30
1559 2175 4.055360 TCTACATTCACGTTCAACTGGTG 58.945 43.478 0.00 0.00 0.00 4.17
1560 2176 4.202223 ACTCTACATTCACGTTCAACTGGT 60.202 41.667 0.00 0.00 0.00 4.00
1674 2290 7.148457 GCTAGTAACTAAAACATGAACCAGACC 60.148 40.741 0.00 0.00 0.00 3.85
1744 2360 8.860088 GCATTGGATTATTTTACCACCTATTCT 58.140 33.333 0.00 0.00 33.20 2.40
1745 2361 8.637986 TGCATTGGATTATTTTACCACCTATTC 58.362 33.333 0.00 0.00 33.20 1.75
1943 2795 1.696884 TGGTCATCACTGGCACTTACA 59.303 47.619 0.00 0.00 0.00 2.41
2012 2864 4.967084 AACATAGTGATTATGCCCGGTA 57.033 40.909 0.00 0.00 42.46 4.02
2033 2885 1.447140 GTGGAAGGACGCGCACATA 60.447 57.895 5.73 0.00 0.00 2.29
2571 3583 5.234752 TCTTGCGTTCAGCTAGTTTTGATA 58.765 37.500 0.00 0.00 46.39 2.15
2659 3671 8.492673 TGCAGAGTGTTTTACTGGATATTAAG 57.507 34.615 0.00 0.00 40.53 1.85
2717 3729 7.708752 TGTTGAACAAACAAGGGTAATTTGATC 59.291 33.333 0.00 1.85 45.85 2.92
2796 3808 6.864360 ATTGTTTGTTCAATCCAACCAATG 57.136 33.333 0.00 0.00 34.78 2.82
2986 3998 2.800544 CCGCCTAAATGTCTGAATACCG 59.199 50.000 0.00 0.00 0.00 4.02
3178 4190 2.106511 CTGAACTTCCTTCTGGGTGGAA 59.893 50.000 0.00 0.00 39.73 3.53
3289 4301 2.264480 CCGTCCACATCCGAGCAA 59.736 61.111 0.00 0.00 0.00 3.91
3295 4307 4.176752 GAGCCCCCGTCCACATCC 62.177 72.222 0.00 0.00 0.00 3.51
3337 4349 2.832201 GCCCTGCCAGCAGAATCC 60.832 66.667 21.01 2.61 46.30 3.01
4758 5770 1.619363 CCACCTTCCTCCCCATCCA 60.619 63.158 0.00 0.00 0.00 3.41
4765 5780 0.256177 GATCCCAACCACCTTCCTCC 59.744 60.000 0.00 0.00 0.00 4.30
4808 5826 1.246737 GCAGCTTTTGGGGTCTCTGG 61.247 60.000 0.00 0.00 0.00 3.86
4966 5984 2.957402 AGTTCTTGATGCCCAACTGA 57.043 45.000 0.00 0.00 0.00 3.41
5233 6251 3.771216 GATCAGGGGAATGGTATGCAAT 58.229 45.455 0.00 0.00 0.00 3.56
5705 6723 2.041701 ACAAAGCTGCCCTTCAATGTT 58.958 42.857 0.00 0.00 31.99 2.71
5706 6724 1.708341 ACAAAGCTGCCCTTCAATGT 58.292 45.000 0.00 0.00 31.99 2.71
5790 6808 0.685785 AGCCTCTTCCGCTCATCTCA 60.686 55.000 0.00 0.00 0.00 3.27
5966 6988 1.999648 ACAGCATCCTCAAGGCAAAA 58.000 45.000 0.00 0.00 34.44 2.44
5988 7010 7.226918 AGTTGATCATGATAAGTCTCAAGCATG 59.773 37.037 8.54 6.94 35.63 4.06
6059 7083 9.515020 TTGACATCAACAACAAAAATCTAACTC 57.485 29.630 0.00 0.00 0.00 3.01
6069 7093 7.487509 CACATGTAACTTGACATCAACAACAAA 59.512 33.333 0.00 0.00 37.99 2.83
6071 7095 6.317391 TCACATGTAACTTGACATCAACAACA 59.683 34.615 0.00 0.00 37.99 3.33
6072 7096 6.632834 GTCACATGTAACTTGACATCAACAAC 59.367 38.462 0.00 0.00 37.99 3.32
6085 7109 7.410120 TCTATCTCACATGTCACATGTAACT 57.590 36.000 23.13 10.67 0.00 2.24
6090 7114 7.606858 AGTTTTCTATCTCACATGTCACATG 57.393 36.000 16.68 16.68 0.00 3.21
6091 7115 8.509690 CAAAGTTTTCTATCTCACATGTCACAT 58.490 33.333 0.00 0.00 0.00 3.21
6092 7116 7.520453 GCAAAGTTTTCTATCTCACATGTCACA 60.520 37.037 0.00 0.00 0.00 3.58
6093 7117 6.798959 GCAAAGTTTTCTATCTCACATGTCAC 59.201 38.462 0.00 0.00 0.00 3.67
6094 7118 6.072508 GGCAAAGTTTTCTATCTCACATGTCA 60.073 38.462 0.00 0.00 0.00 3.58
6095 7119 6.150140 AGGCAAAGTTTTCTATCTCACATGTC 59.850 38.462 0.00 0.00 0.00 3.06
6096 7120 6.006449 AGGCAAAGTTTTCTATCTCACATGT 58.994 36.000 0.00 0.00 0.00 3.21
6123 7147 2.223112 CGTGGATAGCACAACTTCATGC 60.223 50.000 0.00 0.00 42.39 4.06
6129 7153 3.510360 AGTAACTCGTGGATAGCACAACT 59.490 43.478 0.00 0.00 0.00 3.16
6130 7154 3.846360 AGTAACTCGTGGATAGCACAAC 58.154 45.455 0.00 0.00 0.00 3.32
6131 7155 4.530710 AAGTAACTCGTGGATAGCACAA 57.469 40.909 0.00 0.00 0.00 3.33
6132 7156 4.703575 ACTAAGTAACTCGTGGATAGCACA 59.296 41.667 0.00 0.00 0.00 4.57
6133 7157 5.246145 ACTAAGTAACTCGTGGATAGCAC 57.754 43.478 0.00 0.00 0.00 4.40
6134 7158 6.118170 ACTACTAAGTAACTCGTGGATAGCA 58.882 40.000 0.00 0.00 32.84 3.49
6135 7159 6.616774 ACTACTAAGTAACTCGTGGATAGC 57.383 41.667 0.00 0.00 32.84 2.97
6137 7161 9.890629 TCTTAACTACTAAGTAACTCGTGGATA 57.109 33.333 0.00 0.00 38.57 2.59
6138 7162 8.798859 TCTTAACTACTAAGTAACTCGTGGAT 57.201 34.615 0.00 0.00 38.57 3.41
6139 7163 8.798859 ATCTTAACTACTAAGTAACTCGTGGA 57.201 34.615 0.00 0.00 38.57 4.02
6167 7191 8.754080 TCCTAACTTCTTTTGGTCAATGAAAAA 58.246 29.630 0.00 0.00 32.32 1.94
6168 7192 8.299990 TCCTAACTTCTTTTGGTCAATGAAAA 57.700 30.769 0.00 0.00 32.32 2.29
6169 7193 7.889873 TCCTAACTTCTTTTGGTCAATGAAA 57.110 32.000 0.00 0.00 32.32 2.69
6170 7194 7.523709 GCATCCTAACTTCTTTTGGTCAATGAA 60.524 37.037 0.00 0.00 32.32 2.57
6171 7195 6.071952 GCATCCTAACTTCTTTTGGTCAATGA 60.072 38.462 0.00 0.00 32.32 2.57
6172 7196 6.071728 AGCATCCTAACTTCTTTTGGTCAATG 60.072 38.462 0.00 0.00 32.32 2.82
6173 7197 6.012745 AGCATCCTAACTTCTTTTGGTCAAT 58.987 36.000 0.00 0.00 32.32 2.57
6174 7198 5.241506 CAGCATCCTAACTTCTTTTGGTCAA 59.758 40.000 0.00 0.00 32.32 3.18
6175 7199 4.761739 CAGCATCCTAACTTCTTTTGGTCA 59.238 41.667 0.00 0.00 32.32 4.02
6176 7200 5.003804 TCAGCATCCTAACTTCTTTTGGTC 58.996 41.667 0.00 0.00 32.32 4.02
6177 7201 4.985538 TCAGCATCCTAACTTCTTTTGGT 58.014 39.130 0.00 0.00 32.32 3.67
6178 7202 6.521151 AATCAGCATCCTAACTTCTTTTGG 57.479 37.500 0.00 0.00 0.00 3.28
6179 7203 8.734386 ACTTAATCAGCATCCTAACTTCTTTTG 58.266 33.333 0.00 0.00 0.00 2.44
6180 7204 8.870075 ACTTAATCAGCATCCTAACTTCTTTT 57.130 30.769 0.00 0.00 0.00 2.27
6181 7205 7.554476 GGACTTAATCAGCATCCTAACTTCTTT 59.446 37.037 0.00 0.00 0.00 2.52
6182 7206 7.051000 GGACTTAATCAGCATCCTAACTTCTT 58.949 38.462 0.00 0.00 0.00 2.52
6183 7207 6.408662 GGGACTTAATCAGCATCCTAACTTCT 60.409 42.308 0.00 0.00 0.00 2.85
6184 7208 5.760743 GGGACTTAATCAGCATCCTAACTTC 59.239 44.000 0.00 0.00 0.00 3.01
6185 7209 5.430089 AGGGACTTAATCAGCATCCTAACTT 59.570 40.000 0.00 0.00 27.25 2.66
6186 7210 4.971924 AGGGACTTAATCAGCATCCTAACT 59.028 41.667 0.00 0.00 27.25 2.24
6187 7211 5.297569 AGGGACTTAATCAGCATCCTAAC 57.702 43.478 0.00 0.00 27.25 2.34
6188 7212 6.385759 TGTTAGGGACTTAATCAGCATCCTAA 59.614 38.462 0.00 0.00 41.75 2.69
6189 7213 5.903010 TGTTAGGGACTTAATCAGCATCCTA 59.097 40.000 0.00 0.00 41.75 2.94
6190 7214 4.721776 TGTTAGGGACTTAATCAGCATCCT 59.278 41.667 0.00 0.00 41.75 3.24
6191 7215 5.036117 TGTTAGGGACTTAATCAGCATCC 57.964 43.478 0.00 0.00 41.75 3.51
6192 7216 6.073548 CGAATGTTAGGGACTTAATCAGCATC 60.074 42.308 0.00 0.00 41.75 3.91
6193 7217 5.760253 CGAATGTTAGGGACTTAATCAGCAT 59.240 40.000 0.00 0.00 41.75 3.79
6194 7218 5.116180 CGAATGTTAGGGACTTAATCAGCA 58.884 41.667 0.00 0.00 41.75 4.41
6195 7219 4.511826 CCGAATGTTAGGGACTTAATCAGC 59.488 45.833 0.00 0.00 41.75 4.26
6207 7231 5.470098 CCATAGTCAAATCCCGAATGTTAGG 59.530 44.000 0.00 0.00 0.00 2.69
6208 7232 5.049405 GCCATAGTCAAATCCCGAATGTTAG 60.049 44.000 0.00 0.00 0.00 2.34
6209 7233 4.819630 GCCATAGTCAAATCCCGAATGTTA 59.180 41.667 0.00 0.00 0.00 2.41
6210 7234 3.632145 GCCATAGTCAAATCCCGAATGTT 59.368 43.478 0.00 0.00 0.00 2.71
6211 7235 3.214328 GCCATAGTCAAATCCCGAATGT 58.786 45.455 0.00 0.00 0.00 2.71
6212 7236 3.213506 TGCCATAGTCAAATCCCGAATG 58.786 45.455 0.00 0.00 0.00 2.67
6213 7237 3.576078 TGCCATAGTCAAATCCCGAAT 57.424 42.857 0.00 0.00 0.00 3.34
6214 7238 3.358111 TTGCCATAGTCAAATCCCGAA 57.642 42.857 0.00 0.00 0.00 4.30
6215 7239 3.013921 GTTTGCCATAGTCAAATCCCGA 58.986 45.455 0.00 0.00 36.06 5.14
6216 7240 2.223249 CGTTTGCCATAGTCAAATCCCG 60.223 50.000 0.00 0.00 36.06 5.14
6217 7241 3.013921 TCGTTTGCCATAGTCAAATCCC 58.986 45.455 0.00 0.00 36.06 3.85
6218 7242 4.695217 TTCGTTTGCCATAGTCAAATCC 57.305 40.909 0.00 0.00 36.06 3.01
6219 7243 5.640732 ACATTCGTTTGCCATAGTCAAATC 58.359 37.500 0.00 0.00 36.06 2.17
6220 7244 5.643379 ACATTCGTTTGCCATAGTCAAAT 57.357 34.783 0.00 0.00 36.06 2.32
6221 7245 5.446143 AACATTCGTTTGCCATAGTCAAA 57.554 34.783 0.00 0.00 28.09 2.69
6222 7246 5.446143 AAACATTCGTTTGCCATAGTCAA 57.554 34.783 0.00 0.00 43.75 3.18
6273 7298 3.826637 GCTTACCAGCTACCGTTGA 57.173 52.632 0.00 0.00 43.51 3.18
6328 7353 4.219944 ACGTGAGGATGACAAGTTTAGCTA 59.780 41.667 0.00 0.00 0.00 3.32
6339 7364 6.481954 AGTTTTAAATGACGTGAGGATGAC 57.518 37.500 0.00 0.00 0.00 3.06
6340 7365 7.658167 TGTTAGTTTTAAATGACGTGAGGATGA 59.342 33.333 0.00 0.00 0.00 2.92
6341 7366 7.802738 TGTTAGTTTTAAATGACGTGAGGATG 58.197 34.615 0.00 0.00 0.00 3.51
6342 7367 7.972832 TGTTAGTTTTAAATGACGTGAGGAT 57.027 32.000 0.00 0.00 0.00 3.24
6343 7368 7.148705 CGATGTTAGTTTTAAATGACGTGAGGA 60.149 37.037 0.00 0.00 0.00 3.71
6345 7370 7.726079 TCGATGTTAGTTTTAAATGACGTGAG 58.274 34.615 0.00 0.00 0.00 3.51
6346 7371 7.640616 TCGATGTTAGTTTTAAATGACGTGA 57.359 32.000 0.00 0.00 0.00 4.35
6347 7372 8.702408 TTTCGATGTTAGTTTTAAATGACGTG 57.298 30.769 0.00 0.00 0.00 4.49
6348 7373 9.161684 GTTTTCGATGTTAGTTTTAAATGACGT 57.838 29.630 0.00 0.00 0.00 4.34
6390 7415 0.794473 CAGAACGCTCGGGGTTTAAC 59.206 55.000 7.54 0.00 38.76 2.01
6402 7427 9.567848 TTTTCAGAAATAATAAATCCAGAACGC 57.432 29.630 0.00 0.00 0.00 4.84
6466 7491 6.953101 TGCTCAAGATAATGTTAACACCCTA 58.047 36.000 11.22 3.50 0.00 3.53
6468 7493 6.509418 TTGCTCAAGATAATGTTAACACCC 57.491 37.500 11.22 0.54 0.00 4.61
6495 7520 6.162079 CAGACTTGACAGTTGACACTATCAT 58.838 40.000 0.00 0.00 36.31 2.45
6522 7547 7.553334 ACAGACTTGACACTTACACTAGAAAA 58.447 34.615 0.00 0.00 0.00 2.29
6523 7548 7.108841 ACAGACTTGACACTTACACTAGAAA 57.891 36.000 0.00 0.00 0.00 2.52
6524 7549 6.710597 ACAGACTTGACACTTACACTAGAA 57.289 37.500 0.00 0.00 0.00 2.10
6526 7551 8.136165 AGTTAACAGACTTGACACTTACACTAG 58.864 37.037 8.61 0.00 0.00 2.57
6527 7552 8.004087 AGTTAACAGACTTGACACTTACACTA 57.996 34.615 8.61 0.00 0.00 2.74
6528 7553 6.875076 AGTTAACAGACTTGACACTTACACT 58.125 36.000 8.61 0.00 0.00 3.55
6530 7555 6.869695 TGAGTTAACAGACTTGACACTTACA 58.130 36.000 8.61 0.00 0.00 2.41
6531 7556 7.948278 ATGAGTTAACAGACTTGACACTTAC 57.052 36.000 8.61 0.00 0.00 2.34
6532 7557 7.441157 CCAATGAGTTAACAGACTTGACACTTA 59.559 37.037 8.61 0.00 0.00 2.24
6533 7558 6.260936 CCAATGAGTTAACAGACTTGACACTT 59.739 38.462 8.61 0.00 0.00 3.16
6535 7560 5.560953 GCCAATGAGTTAACAGACTTGACAC 60.561 44.000 8.61 0.00 0.00 3.67
6536 7561 4.515191 GCCAATGAGTTAACAGACTTGACA 59.485 41.667 8.61 0.00 0.00 3.58
6537 7562 4.757149 AGCCAATGAGTTAACAGACTTGAC 59.243 41.667 8.61 0.00 0.00 3.18
6538 7563 4.973168 AGCCAATGAGTTAACAGACTTGA 58.027 39.130 8.61 0.00 0.00 3.02
6539 7564 5.239306 TGAAGCCAATGAGTTAACAGACTTG 59.761 40.000 8.61 5.92 0.00 3.16
6542 7569 4.757149 ACTGAAGCCAATGAGTTAACAGAC 59.243 41.667 8.61 0.00 0.00 3.51
6586 7635 4.060900 GAGCTAAGCGAATGAATGGATGA 58.939 43.478 0.00 0.00 0.00 2.92
6587 7636 4.063689 AGAGCTAAGCGAATGAATGGATG 58.936 43.478 0.00 0.00 0.00 3.51
6588 7637 4.348863 AGAGCTAAGCGAATGAATGGAT 57.651 40.909 0.00 0.00 0.00 3.41
6589 7638 3.827008 AGAGCTAAGCGAATGAATGGA 57.173 42.857 0.00 0.00 0.00 3.41
6590 7639 3.624861 ACAAGAGCTAAGCGAATGAATGG 59.375 43.478 0.00 0.00 0.00 3.16
6591 7640 4.569966 AGACAAGAGCTAAGCGAATGAATG 59.430 41.667 0.00 0.00 0.00 2.67
6592 7641 4.764172 AGACAAGAGCTAAGCGAATGAAT 58.236 39.130 0.00 0.00 0.00 2.57
6593 7642 4.193826 AGACAAGAGCTAAGCGAATGAA 57.806 40.909 0.00 0.00 0.00 2.57
6613 7662 0.597637 CACTAATCGGCCTGCGGTAG 60.598 60.000 0.00 0.00 0.00 3.18
6631 7680 1.006281 AGGCCATTTCTCCATCTTGCA 59.994 47.619 5.01 0.00 0.00 4.08
6633 7682 3.094572 ACAAGGCCATTTCTCCATCTTG 58.905 45.455 5.01 0.00 36.96 3.02
6639 7688 4.998033 GCTAGTATACAAGGCCATTTCTCC 59.002 45.833 5.01 0.00 0.00 3.71
6644 7693 2.550208 GCCGCTAGTATACAAGGCCATT 60.550 50.000 5.01 0.00 38.72 3.16
6646 7695 0.391597 GCCGCTAGTATACAAGGCCA 59.608 55.000 5.01 0.00 38.72 5.36
6647 7696 3.212450 GCCGCTAGTATACAAGGCC 57.788 57.895 15.53 0.00 38.72 5.19
6648 7697 0.320508 GGGCCGCTAGTATACAAGGC 60.321 60.000 17.18 17.18 43.47 4.35
6649 7698 1.045407 TGGGCCGCTAGTATACAAGG 58.955 55.000 5.50 3.85 0.00 3.61
6650 7699 2.299013 TCATGGGCCGCTAGTATACAAG 59.701 50.000 5.50 0.00 0.00 3.16
6651 7700 2.299013 CTCATGGGCCGCTAGTATACAA 59.701 50.000 5.50 0.00 0.00 2.41
6681 7735 0.100503 AAAAACCAGCTGTGCACGTC 59.899 50.000 13.81 6.19 0.00 4.34
6703 7757 0.958822 ATGTGGGACAAAAGGAACGC 59.041 50.000 0.00 0.00 44.16 4.84
6709 7763 0.523072 CCAGCGATGTGGGACAAAAG 59.477 55.000 0.00 0.00 44.16 2.27
6734 7788 4.075793 TCCACCTCCCCCTCCTCG 62.076 72.222 0.00 0.00 0.00 4.63
6739 7793 2.374342 CCATCTCCACCTCCCCCT 59.626 66.667 0.00 0.00 0.00 4.79
6740 7794 2.265890 TACCCATCTCCACCTCCCCC 62.266 65.000 0.00 0.00 0.00 5.40
6743 7797 3.858135 TCTTATACCCATCTCCACCTCC 58.142 50.000 0.00 0.00 0.00 4.30
6772 7826 2.116238 TGGGATTACCTGTAGCCTCAC 58.884 52.381 0.00 0.00 41.11 3.51
6773 7827 2.561209 TGGGATTACCTGTAGCCTCA 57.439 50.000 0.00 0.00 41.11 3.86
6774 7828 3.243724 AGATGGGATTACCTGTAGCCTC 58.756 50.000 0.00 0.00 41.11 4.70
6775 7829 3.352611 AGATGGGATTACCTGTAGCCT 57.647 47.619 0.00 0.00 41.11 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.