Multiple sequence alignment - TraesCS4D01G045600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G045600 chr4D 100.000 3499 0 0 1 3499 21153338 21149840 0.000000e+00 6462.0
1 TraesCS4D01G045600 chr4A 90.540 1649 109 13 1048 2684 580304143 580302530 0.000000e+00 2137.0
2 TraesCS4D01G045600 chr4A 92.614 352 7 5 3152 3498 580302200 580301863 4.060000e-134 488.0
3 TraesCS4D01G045600 chr4A 93.714 175 10 1 545 719 580304649 580304476 9.630000e-66 261.0
4 TraesCS4D01G045600 chr4A 86.082 194 8 6 866 1041 580304387 580304195 1.280000e-44 191.0
5 TraesCS4D01G045600 chr4A 93.750 96 4 1 2924 3019 580302419 580302326 3.640000e-30 143.0
6 TraesCS4D01G045600 chr4A 97.183 71 0 2 1 71 591693367 591693435 6.140000e-23 119.0
7 TraesCS4D01G045600 chr4A 92.754 69 0 2 2 70 661015552 661015489 1.030000e-15 95.3
8 TraesCS4D01G045600 chr5B 92.958 639 36 5 1710 2344 86129649 86130282 0.000000e+00 922.0
9 TraesCS4D01G045600 chr5B 91.667 72 6 0 2724 2795 86130211 86130282 2.220000e-17 100.0
10 TraesCS4D01G045600 chr5B 91.429 70 1 2 1 70 55613393 55613457 1.340000e-14 91.6
11 TraesCS4D01G045600 chr5B 91.429 70 1 2 1 70 662343745 662343809 1.340000e-14 91.6
12 TraesCS4D01G045600 chr4B 90.755 649 39 5 1712 2344 299459038 299459681 0.000000e+00 846.0
13 TraesCS4D01G045600 chr4B 87.673 722 54 13 1252 1958 33622235 33622936 0.000000e+00 808.0
14 TraesCS4D01G045600 chr4B 89.731 633 54 4 1962 2590 33623059 33623684 0.000000e+00 798.0
15 TraesCS4D01G045600 chr4B 90.593 489 14 8 3038 3496 33624055 33624541 1.380000e-173 619.0
16 TraesCS4D01G045600 chr4B 91.218 353 10 6 870 1208 33621885 33622230 8.850000e-126 460.0
17 TraesCS4D01G045600 chr4B 92.090 177 13 1 545 720 33621637 33621813 7.500000e-62 248.0
18 TraesCS4D01G045600 chr4B 89.873 79 4 1 2867 2941 33623902 33623980 7.990000e-17 99.0
19 TraesCS4D01G045600 chr5A 91.435 467 33 2 84 544 390372498 390372033 4.930000e-178 634.0
20 TraesCS4D01G045600 chr2B 93.717 382 24 0 83 464 690025101 690024720 1.090000e-159 573.0
21 TraesCS4D01G045600 chr2B 94.643 56 3 0 489 544 690024220 690024165 1.730000e-13 87.9
22 TraesCS4D01G045600 chr2A 84.938 405 39 13 1045 1447 746730394 746730778 1.180000e-104 390.0
23 TraesCS4D01G045600 chr2A 91.549 71 4 2 1 71 52222266 52222334 2.870000e-16 97.1
24 TraesCS4D01G045600 chr3A 95.327 107 5 0 1048 1154 555428655 555428549 1.670000e-38 171.0
25 TraesCS4D01G045600 chr3A 81.977 172 26 4 551 720 78899335 78899503 1.310000e-29 141.0
26 TraesCS4D01G045600 chr7A 92.727 110 8 0 1045 1154 643761368 643761477 3.610000e-35 159.0
27 TraesCS4D01G045600 chr3B 83.626 171 24 4 551 720 114881307 114881140 1.300000e-34 158.0
28 TraesCS4D01G045600 chr3D 84.568 162 20 4 551 710 67541066 67541224 4.680000e-34 156.0
29 TraesCS4D01G045600 chr5D 94.286 70 3 1 1 70 530635877 530635945 4.780000e-19 106.0
30 TraesCS4D01G045600 chr6A 92.647 68 3 2 4 71 604497695 604497630 2.870000e-16 97.1
31 TraesCS4D01G045600 chr6A 91.549 71 1 2 1 71 182506005 182506070 3.720000e-15 93.5
32 TraesCS4D01G045600 chr7B 91.549 71 1 2 1 71 661450516 661450581 3.720000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G045600 chr4D 21149840 21153338 3498 True 6462.000000 6462 100.000000 1 3499 1 chr4D.!!$R1 3498
1 TraesCS4D01G045600 chr4A 580301863 580304649 2786 True 644.000000 2137 91.340000 545 3498 5 chr4A.!!$R2 2953
2 TraesCS4D01G045600 chr5B 86129649 86130282 633 False 511.000000 922 92.312500 1710 2795 2 chr5B.!!$F3 1085
3 TraesCS4D01G045600 chr4B 299459038 299459681 643 False 846.000000 846 90.755000 1712 2344 1 chr4B.!!$F1 632
4 TraesCS4D01G045600 chr4B 33621637 33624541 2904 False 505.333333 808 90.196333 545 3496 6 chr4B.!!$F2 2951
5 TraesCS4D01G045600 chr2B 690024165 690025101 936 True 330.450000 573 94.180000 83 544 2 chr2B.!!$R1 461

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
447 448 0.034574 TGTTAGGCATGGGCGATGTT 60.035 50.0 11.24 3.05 42.47 2.71 F
1460 1567 0.097674 GCAGAACGGCTTGTATGCTG 59.902 55.0 10.39 0.00 44.34 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2279 2753 0.478072 TGTCAACCAATGGCAGGAGT 59.522 50.0 0.00 0.0 39.16 3.85 R
2766 3290 0.040204 CAACCCAGGGCAGGAGAAAT 59.960 55.0 4.91 0.0 0.00 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.609691 AGTTTTTCTCTCGCGACAAAAA 57.390 36.364 18.04 18.04 28.70 1.94
39 40 4.909696 AAAAAGAAAAATTTTGGGCCCG 57.090 36.364 19.37 0.00 32.81 6.13
40 41 2.559698 AAGAAAAATTTTGGGCCCGG 57.440 45.000 19.37 0.00 0.00 5.73
41 42 0.690192 AGAAAAATTTTGGGCCCGGG 59.310 50.000 19.09 19.09 0.00 5.73
42 43 0.322098 GAAAAATTTTGGGCCCGGGG 60.322 55.000 25.28 9.31 0.00 5.73
53 54 4.447342 CCCGGGGCTTGCTCCAAT 62.447 66.667 14.71 0.00 0.00 3.16
54 55 2.830370 CCGGGGCTTGCTCCAATC 60.830 66.667 12.41 0.00 0.00 2.67
55 56 2.830370 CGGGGCTTGCTCCAATCC 60.830 66.667 12.41 0.00 0.00 3.01
56 57 2.685999 GGGGCTTGCTCCAATCCT 59.314 61.111 6.65 0.00 31.20 3.24
57 58 1.755783 GGGGCTTGCTCCAATCCTG 60.756 63.158 6.65 0.00 31.20 3.86
58 59 1.755783 GGGCTTGCTCCAATCCTGG 60.756 63.158 0.00 0.00 45.08 4.45
66 67 2.918248 CCAATCCTGGATCCGCCA 59.082 61.111 10.14 0.00 46.92 5.69
67 68 1.526917 CCAATCCTGGATCCGCCAC 60.527 63.158 10.14 0.00 46.92 5.01
68 69 1.528824 CAATCCTGGATCCGCCACT 59.471 57.895 10.14 0.00 43.33 4.00
69 70 0.816825 CAATCCTGGATCCGCCACTG 60.817 60.000 10.14 0.00 43.33 3.66
70 71 1.987807 AATCCTGGATCCGCCACTGG 61.988 60.000 10.14 2.59 43.33 4.00
71 72 4.864334 CCTGGATCCGCCACTGGC 62.864 72.222 10.35 10.35 43.33 4.85
81 82 2.548178 GCCACTGGCGATGGATATG 58.452 57.895 3.73 0.00 39.62 1.78
129 130 2.364972 TAGCACGAGATGATCAGGGA 57.635 50.000 0.09 0.00 0.00 4.20
138 139 3.515104 GAGATGATCAGGGATCCTTCCTC 59.485 52.174 12.58 3.53 42.20 3.71
142 143 0.617535 TCAGGGATCCTTCCTCGCAA 60.618 55.000 12.58 0.00 42.20 4.85
154 155 3.247006 TCCTCGCAACCAGATTTAGAC 57.753 47.619 0.00 0.00 0.00 2.59
171 172 2.001558 AGACACTACCCAGGGACTACT 58.998 52.381 14.54 0.58 36.02 2.57
185 186 2.554893 GGACTACTTCTCCGCTGATAGG 59.445 54.545 0.00 0.00 0.00 2.57
186 187 3.215975 GACTACTTCTCCGCTGATAGGT 58.784 50.000 0.00 0.00 0.00 3.08
201 202 0.107831 TAGGTGAAGCTTTGGCGTGT 59.892 50.000 0.00 0.00 44.37 4.49
324 325 5.397221 CCTGTCTGATGTGGGTCTCATTATT 60.397 44.000 0.00 0.00 0.00 1.40
354 355 6.385649 ACGAAGGTCTATCTCTCATCTTTC 57.614 41.667 0.00 0.00 0.00 2.62
395 396 6.025749 TCATATTAGTAGAGACGCCAATGG 57.974 41.667 0.00 0.00 0.00 3.16
415 416 1.086696 TCTGGCGTGCAAATTAGCTC 58.913 50.000 0.00 0.00 34.99 4.09
422 423 0.101040 TGCAAATTAGCTCGGCATGC 59.899 50.000 9.90 9.90 34.99 4.06
425 426 1.945394 CAAATTAGCTCGGCATGCTCT 59.055 47.619 18.92 11.86 41.46 4.09
447 448 0.034574 TGTTAGGCATGGGCGATGTT 60.035 50.000 11.24 3.05 42.47 2.71
458 459 4.274602 TGGGCGATGTTACTTTCAGTTA 57.725 40.909 0.00 0.00 0.00 2.24
464 465 6.147328 GGCGATGTTACTTTCAGTTATATCCC 59.853 42.308 0.00 0.00 26.47 3.85
465 466 6.929606 GCGATGTTACTTTCAGTTATATCCCT 59.070 38.462 0.00 0.00 26.47 4.20
466 467 7.095607 GCGATGTTACTTTCAGTTATATCCCTG 60.096 40.741 0.00 0.00 26.47 4.45
467 468 8.141909 CGATGTTACTTTCAGTTATATCCCTGA 58.858 37.037 1.18 1.18 35.97 3.86
468 469 9.482627 GATGTTACTTTCAGTTATATCCCTGAG 57.517 37.037 4.88 0.00 38.81 3.35
469 470 8.375493 TGTTACTTTCAGTTATATCCCTGAGT 57.625 34.615 4.88 4.12 38.81 3.41
470 471 8.822805 TGTTACTTTCAGTTATATCCCTGAGTT 58.177 33.333 4.88 0.00 38.81 3.01
471 472 9.315525 GTTACTTTCAGTTATATCCCTGAGTTC 57.684 37.037 4.88 0.00 38.81 3.01
472 473 7.741554 ACTTTCAGTTATATCCCTGAGTTCT 57.258 36.000 4.88 0.00 38.81 3.01
473 474 8.152023 ACTTTCAGTTATATCCCTGAGTTCTT 57.848 34.615 4.88 0.00 38.81 2.52
474 475 8.043710 ACTTTCAGTTATATCCCTGAGTTCTTG 58.956 37.037 4.88 0.00 38.81 3.02
475 476 7.733773 TTCAGTTATATCCCTGAGTTCTTGA 57.266 36.000 4.88 0.00 38.81 3.02
476 477 7.353414 TCAGTTATATCCCTGAGTTCTTGAG 57.647 40.000 1.18 0.00 32.93 3.02
477 478 6.897966 TCAGTTATATCCCTGAGTTCTTGAGT 59.102 38.462 1.18 0.00 32.93 3.41
478 479 6.983307 CAGTTATATCCCTGAGTTCTTGAGTG 59.017 42.308 0.00 0.00 0.00 3.51
479 480 6.897966 AGTTATATCCCTGAGTTCTTGAGTGA 59.102 38.462 0.00 0.00 0.00 3.41
480 481 3.971245 ATCCCTGAGTTCTTGAGTGAC 57.029 47.619 0.00 0.00 0.00 3.67
481 482 1.613925 TCCCTGAGTTCTTGAGTGACG 59.386 52.381 0.00 0.00 0.00 4.35
482 483 1.613925 CCCTGAGTTCTTGAGTGACGA 59.386 52.381 0.00 0.00 0.00 4.20
483 484 2.035961 CCCTGAGTTCTTGAGTGACGAA 59.964 50.000 0.00 0.00 0.00 3.85
484 485 3.492656 CCCTGAGTTCTTGAGTGACGAAA 60.493 47.826 0.00 0.00 0.00 3.46
485 486 4.310769 CCTGAGTTCTTGAGTGACGAAAT 58.689 43.478 0.00 0.00 0.00 2.17
486 487 4.151335 CCTGAGTTCTTGAGTGACGAAATG 59.849 45.833 0.00 0.00 0.00 2.32
487 488 3.494626 TGAGTTCTTGAGTGACGAAATGC 59.505 43.478 0.00 0.00 0.00 3.56
488 489 3.466836 AGTTCTTGAGTGACGAAATGCA 58.533 40.909 0.00 0.00 0.00 3.96
489 490 3.248602 AGTTCTTGAGTGACGAAATGCAC 59.751 43.478 0.00 0.00 35.30 4.57
491 492 4.251543 TCTTGAGTGACGAAATGCACTA 57.748 40.909 0.00 0.00 44.77 2.74
492 493 4.820897 TCTTGAGTGACGAAATGCACTAT 58.179 39.130 0.00 0.00 44.77 2.12
493 494 4.627035 TCTTGAGTGACGAAATGCACTATG 59.373 41.667 0.00 0.00 44.77 2.23
494 495 3.925379 TGAGTGACGAAATGCACTATGT 58.075 40.909 0.00 0.00 44.77 2.29
495 496 5.066968 TGAGTGACGAAATGCACTATGTA 57.933 39.130 0.00 0.00 44.77 2.29
496 497 4.862574 TGAGTGACGAAATGCACTATGTAC 59.137 41.667 0.00 0.00 44.77 2.90
497 498 3.857665 AGTGACGAAATGCACTATGTACG 59.142 43.478 0.00 0.00 43.10 3.67
498 499 3.855379 GTGACGAAATGCACTATGTACGA 59.145 43.478 0.00 0.00 32.44 3.43
499 500 4.503007 GTGACGAAATGCACTATGTACGAT 59.497 41.667 0.00 0.00 32.44 3.73
500 501 4.502645 TGACGAAATGCACTATGTACGATG 59.497 41.667 0.00 0.00 0.00 3.84
501 502 3.802139 ACGAAATGCACTATGTACGATGG 59.198 43.478 0.00 0.00 0.00 3.51
502 503 4.048504 CGAAATGCACTATGTACGATGGA 58.951 43.478 0.00 0.00 0.00 3.41
503 504 4.148871 CGAAATGCACTATGTACGATGGAG 59.851 45.833 0.00 0.00 0.00 3.86
504 505 3.667497 ATGCACTATGTACGATGGAGG 57.333 47.619 0.00 0.00 0.00 4.30
505 506 2.661718 TGCACTATGTACGATGGAGGA 58.338 47.619 0.00 0.00 0.00 3.71
506 507 3.028130 TGCACTATGTACGATGGAGGAA 58.972 45.455 0.00 0.00 0.00 3.36
507 508 3.641436 TGCACTATGTACGATGGAGGAAT 59.359 43.478 0.00 0.00 0.00 3.01
508 509 3.990469 GCACTATGTACGATGGAGGAATG 59.010 47.826 0.00 0.00 0.00 2.67
509 510 4.262036 GCACTATGTACGATGGAGGAATGA 60.262 45.833 0.00 0.00 0.00 2.57
510 511 5.739070 GCACTATGTACGATGGAGGAATGAA 60.739 44.000 0.00 0.00 0.00 2.57
511 512 6.459066 CACTATGTACGATGGAGGAATGAAT 58.541 40.000 0.00 0.00 0.00 2.57
512 513 7.602753 CACTATGTACGATGGAGGAATGAATA 58.397 38.462 0.00 0.00 0.00 1.75
513 514 8.088365 CACTATGTACGATGGAGGAATGAATAA 58.912 37.037 0.00 0.00 0.00 1.40
514 515 8.647796 ACTATGTACGATGGAGGAATGAATAAA 58.352 33.333 0.00 0.00 0.00 1.40
515 516 9.658799 CTATGTACGATGGAGGAATGAATAAAT 57.341 33.333 0.00 0.00 0.00 1.40
516 517 7.728847 TGTACGATGGAGGAATGAATAAATG 57.271 36.000 0.00 0.00 0.00 2.32
517 518 5.695851 ACGATGGAGGAATGAATAAATGC 57.304 39.130 0.00 0.00 0.00 3.56
518 519 4.520492 ACGATGGAGGAATGAATAAATGCC 59.480 41.667 0.00 0.00 0.00 4.40
519 520 4.763793 CGATGGAGGAATGAATAAATGCCT 59.236 41.667 0.00 0.00 38.43 4.75
520 521 5.242393 CGATGGAGGAATGAATAAATGCCTT 59.758 40.000 0.00 0.00 35.51 4.35
521 522 6.239120 CGATGGAGGAATGAATAAATGCCTTT 60.239 38.462 0.00 0.00 35.51 3.11
522 523 7.040478 CGATGGAGGAATGAATAAATGCCTTTA 60.040 37.037 0.00 0.00 35.51 1.85
523 524 7.969690 TGGAGGAATGAATAAATGCCTTTAA 57.030 32.000 0.00 0.00 35.51 1.52
524 525 8.010733 TGGAGGAATGAATAAATGCCTTTAAG 57.989 34.615 0.00 0.00 35.51 1.85
525 526 7.069826 TGGAGGAATGAATAAATGCCTTTAAGG 59.930 37.037 6.64 6.64 35.51 2.69
526 527 7.365497 AGGAATGAATAAATGCCTTTAAGGG 57.635 36.000 13.42 0.00 30.48 3.95
527 528 6.902974 AGGAATGAATAAATGCCTTTAAGGGT 59.097 34.615 13.42 0.00 30.48 4.34
528 529 7.069950 AGGAATGAATAAATGCCTTTAAGGGTC 59.930 37.037 13.42 0.00 30.48 4.46
529 530 5.828299 TGAATAAATGCCTTTAAGGGTCG 57.172 39.130 13.42 0.00 35.37 4.79
530 531 5.258051 TGAATAAATGCCTTTAAGGGTCGT 58.742 37.500 13.42 0.00 35.37 4.34
531 532 6.416415 TGAATAAATGCCTTTAAGGGTCGTA 58.584 36.000 13.42 0.00 35.37 3.43
532 533 6.316890 TGAATAAATGCCTTTAAGGGTCGTAC 59.683 38.462 13.42 0.00 35.37 3.67
533 534 3.994931 AATGCCTTTAAGGGTCGTACT 57.005 42.857 13.42 0.00 35.37 2.73
534 535 3.994931 ATGCCTTTAAGGGTCGTACTT 57.005 42.857 13.42 0.00 35.37 2.24
535 536 3.323751 TGCCTTTAAGGGTCGTACTTC 57.676 47.619 13.42 0.00 35.37 3.01
536 537 2.633967 TGCCTTTAAGGGTCGTACTTCA 59.366 45.455 13.42 0.00 35.37 3.02
537 538 3.071312 TGCCTTTAAGGGTCGTACTTCAA 59.929 43.478 13.42 0.00 35.37 2.69
538 539 4.259356 GCCTTTAAGGGTCGTACTTCAAT 58.741 43.478 13.42 0.00 35.37 2.57
539 540 5.046448 TGCCTTTAAGGGTCGTACTTCAATA 60.046 40.000 13.42 0.00 35.37 1.90
540 541 5.876460 GCCTTTAAGGGTCGTACTTCAATAA 59.124 40.000 13.42 0.00 35.37 1.40
541 542 6.372381 GCCTTTAAGGGTCGTACTTCAATAAA 59.628 38.462 13.42 0.00 35.37 1.40
542 543 7.094677 GCCTTTAAGGGTCGTACTTCAATAAAA 60.095 37.037 13.42 0.00 35.37 1.52
543 544 8.785946 CCTTTAAGGGTCGTACTTCAATAAAAA 58.214 33.333 2.44 0.00 0.00 1.94
595 596 1.604278 GAGGCTTGCATAATTCCCGTC 59.396 52.381 0.00 0.00 0.00 4.79
613 614 0.681887 TCTGCCCCGTTCATCTACGA 60.682 55.000 0.00 0.00 43.99 3.43
703 704 3.353557 TCTTCTCGTATAGCTGTGTGGT 58.646 45.455 0.00 0.00 0.00 4.16
711 712 6.558009 TCGTATAGCTGTGTGGTACTAAAAG 58.442 40.000 0.00 0.00 0.00 2.27
712 713 6.375174 TCGTATAGCTGTGTGGTACTAAAAGA 59.625 38.462 0.00 0.00 0.00 2.52
713 714 7.067859 TCGTATAGCTGTGTGGTACTAAAAGAT 59.932 37.037 0.00 0.00 0.00 2.40
714 715 8.347771 CGTATAGCTGTGTGGTACTAAAAGATA 58.652 37.037 0.00 0.00 0.00 1.98
715 716 9.460906 GTATAGCTGTGTGGTACTAAAAGATAC 57.539 37.037 0.00 0.00 0.00 2.24
716 717 6.607004 AGCTGTGTGGTACTAAAAGATACT 57.393 37.500 0.00 0.00 0.00 2.12
718 719 6.210784 AGCTGTGTGGTACTAAAAGATACTCA 59.789 38.462 0.00 0.00 0.00 3.41
719 720 6.531948 GCTGTGTGGTACTAAAAGATACTCAG 59.468 42.308 0.00 0.00 0.00 3.35
720 721 7.577046 GCTGTGTGGTACTAAAAGATACTCAGA 60.577 40.741 0.00 0.00 0.00 3.27
721 722 8.185506 TGTGTGGTACTAAAAGATACTCAGAA 57.814 34.615 0.00 0.00 0.00 3.02
723 724 7.272948 GTGTGGTACTAAAAGATACTCAGAACG 59.727 40.741 0.00 0.00 0.00 3.95
724 725 6.750963 GTGGTACTAAAAGATACTCAGAACGG 59.249 42.308 0.00 0.00 0.00 4.44
725 726 6.127535 TGGTACTAAAAGATACTCAGAACGGG 60.128 42.308 0.00 0.00 0.00 5.28
726 727 5.340439 ACTAAAAGATACTCAGAACGGGG 57.660 43.478 0.00 0.00 0.00 5.73
727 728 5.021458 ACTAAAAGATACTCAGAACGGGGA 58.979 41.667 0.00 0.00 0.00 4.81
729 730 4.408182 AAAGATACTCAGAACGGGGATG 57.592 45.455 0.00 0.00 0.00 3.51
730 731 3.033659 AGATACTCAGAACGGGGATGT 57.966 47.619 0.00 0.00 0.00 3.06
732 733 4.742012 AGATACTCAGAACGGGGATGTAT 58.258 43.478 0.00 0.00 0.00 2.29
733 734 4.767928 AGATACTCAGAACGGGGATGTATC 59.232 45.833 0.00 0.00 36.65 2.24
734 735 3.033659 ACTCAGAACGGGGATGTATCT 57.966 47.619 0.00 0.00 0.00 1.98
735 736 2.695666 ACTCAGAACGGGGATGTATCTG 59.304 50.000 0.00 0.00 39.04 2.90
736 737 2.036475 CTCAGAACGGGGATGTATCTGG 59.964 54.545 0.00 0.00 38.39 3.86
737 738 1.762957 CAGAACGGGGATGTATCTGGT 59.237 52.381 0.00 0.00 35.11 4.00
738 739 1.762957 AGAACGGGGATGTATCTGGTG 59.237 52.381 0.00 0.00 0.00 4.17
739 740 0.180406 AACGGGGATGTATCTGGTGC 59.820 55.000 0.00 0.00 0.00 5.01
741 742 0.532862 CGGGGATGTATCTGGTGCAC 60.533 60.000 8.80 8.80 0.00 4.57
742 743 0.179018 GGGGATGTATCTGGTGCACC 60.179 60.000 29.67 29.67 0.00 5.01
743 744 0.532862 GGGATGTATCTGGTGCACCG 60.533 60.000 30.07 23.48 39.43 4.94
744 745 0.532862 GGATGTATCTGGTGCACCGG 60.533 60.000 35.06 35.06 43.86 5.28
745 746 0.178068 GATGTATCTGGTGCACCGGT 59.822 55.000 37.57 27.76 43.01 5.28
746 747 0.178068 ATGTATCTGGTGCACCGGTC 59.822 55.000 37.57 28.29 43.01 4.79
747 748 0.902984 TGTATCTGGTGCACCGGTCT 60.903 55.000 37.57 28.55 43.01 3.85
748 749 0.179108 GTATCTGGTGCACCGGTCTC 60.179 60.000 37.57 25.40 43.01 3.36
749 750 1.327690 TATCTGGTGCACCGGTCTCC 61.328 60.000 37.57 12.32 43.01 3.71
750 751 4.394712 CTGGTGCACCGGTCTCCC 62.395 72.222 32.99 7.68 39.43 4.30
765 766 5.945466 GGTCTCCCGTTACACATTAAAAA 57.055 39.130 0.00 0.00 0.00 1.94
916 944 3.905678 CTAGGGCCCGCAGAGACG 61.906 72.222 18.44 0.00 0.00 4.18
941 986 1.488812 CCGGTCCACATCCATCCTAAA 59.511 52.381 0.00 0.00 0.00 1.85
1045 1091 3.245087 GGAAGAAGAGGAAGGAAAAGGCT 60.245 47.826 0.00 0.00 0.00 4.58
1229 1323 1.675007 CTCCCTTCCTCCCTTCCTTT 58.325 55.000 0.00 0.00 0.00 3.11
1235 1329 1.657804 TCCTCCCTTCCTTTCTCCAC 58.342 55.000 0.00 0.00 0.00 4.02
1243 1337 1.073199 CCTTTCTCCACGCCCAAGT 59.927 57.895 0.00 0.00 0.00 3.16
1255 1349 1.405661 CGCCCAAGTTTACTCCTCTCC 60.406 57.143 0.00 0.00 0.00 3.71
1324 1418 1.102154 CAATCCCGTGGCTAATGCAA 58.898 50.000 0.00 0.00 41.91 4.08
1332 1426 1.273327 GTGGCTAATGCAAAACTGGCT 59.727 47.619 0.00 0.00 41.91 4.75
1412 1518 6.153680 AGGTACGTCTCTCTCTCAAAATCAAT 59.846 38.462 0.00 0.00 0.00 2.57
1453 1560 0.602638 TAGGTGTGCAGAACGGCTTG 60.603 55.000 0.00 0.00 34.04 4.01
1457 1564 1.135972 GTGTGCAGAACGGCTTGTATG 60.136 52.381 0.00 0.00 34.04 2.39
1460 1567 0.097674 GCAGAACGGCTTGTATGCTG 59.902 55.000 10.39 0.00 44.34 4.41
1461 1568 0.097674 CAGAACGGCTTGTATGCTGC 59.902 55.000 0.00 0.00 42.69 5.25
1466 1574 1.825285 CGGCTTGTATGCTGCGCTAG 61.825 60.000 9.73 5.66 32.21 3.42
1498 1606 4.094294 CAGTGTCGTGTTTCTTGAAGGAAA 59.906 41.667 0.00 0.00 33.47 3.13
1500 1608 5.357032 AGTGTCGTGTTTCTTGAAGGAAAAT 59.643 36.000 0.00 0.00 37.02 1.82
1506 1614 5.920840 GTGTTTCTTGAAGGAAAATACTGGC 59.079 40.000 0.00 0.00 37.02 4.85
1512 1620 1.002857 AGGAAAATACTGGCCCTGCT 58.997 50.000 0.00 0.00 0.00 4.24
1518 1626 0.471617 ATACTGGCCCTGCTAAGCTG 59.528 55.000 0.00 0.00 0.00 4.24
1533 1641 2.752358 CTGCTGCTGGACTTGGGA 59.248 61.111 0.00 0.00 0.00 4.37
1534 1642 1.073722 CTGCTGCTGGACTTGGGAA 59.926 57.895 0.00 0.00 0.00 3.97
1662 1770 2.017049 GGCATGTGTAAGCTTACCCTG 58.983 52.381 29.15 23.15 32.72 4.45
1703 1812 7.027874 ACAATTTTGATCTTGGGGTCTAGTA 57.972 36.000 0.00 0.00 0.00 1.82
1751 1860 0.179936 AGATCCTGCTAGCTTGGCAC 59.820 55.000 17.23 13.65 35.71 5.01
1792 1901 4.892934 AGGCAACACAAGTTTCTATTTCCA 59.107 37.500 0.00 0.00 35.28 3.53
1824 1933 8.736742 CGTGCTTGATTTTGAATTACATATGTC 58.263 33.333 12.68 0.00 0.00 3.06
1825 1934 9.023967 GTGCTTGATTTTGAATTACATATGTCC 57.976 33.333 12.68 1.33 0.00 4.02
1892 2001 1.173043 TCTTGAATCGGCGCCAAATT 58.827 45.000 28.98 24.24 0.00 1.82
1997 2464 9.587772 GATACCTTGAGCGTTTCACATATATAT 57.412 33.333 0.00 0.00 34.94 0.86
2001 2471 7.063898 CCTTGAGCGTTTCACATATATATCCTG 59.936 40.741 0.00 0.00 34.94 3.86
2010 2480 7.175347 TCACATATATATCCTGTTCTGCCTC 57.825 40.000 0.00 0.00 0.00 4.70
2031 2501 3.753434 ACAGAGCGAGCCTGTCCG 61.753 66.667 11.54 0.00 40.55 4.79
2045 2515 0.679640 TGTCCGGAATGCAACCATCC 60.680 55.000 5.23 7.43 0.00 3.51
2136 2610 0.984230 TCTGAATCCTGCCGACCTTT 59.016 50.000 0.00 0.00 0.00 3.11
2228 2702 2.498905 CACGCATTCAATGAGAACACG 58.501 47.619 8.26 0.00 39.49 4.49
2236 2710 6.521133 GCATTCAATGAGAACACGTAAGAAAG 59.479 38.462 0.00 0.00 39.49 2.62
2240 2714 7.207383 TCAATGAGAACACGTAAGAAAGAAGA 58.793 34.615 0.00 0.00 43.62 2.87
2267 2741 6.607600 TCCTACTATCAGTGTATGGATATGGC 59.392 42.308 0.00 0.00 0.00 4.40
2268 2742 5.683876 ACTATCAGTGTATGGATATGGCC 57.316 43.478 0.00 0.00 0.00 5.36
2269 2743 5.093677 ACTATCAGTGTATGGATATGGCCA 58.906 41.667 8.56 8.56 43.23 5.36
2279 2753 5.912149 ATGGATATGGCCAGAAGAAACTA 57.088 39.130 13.05 0.00 42.15 2.24
2327 2801 1.804151 TCAACGAAATTTCTCCTGCCG 59.196 47.619 15.92 4.31 0.00 5.69
2329 2803 1.892209 ACGAAATTTCTCCTGCCGTT 58.108 45.000 15.92 0.00 0.00 4.44
2351 2825 3.324268 TGGTTGACCATTGATGTTGCATT 59.676 39.130 0.00 0.00 42.01 3.56
2476 2952 1.959042 ATGTGGCCATAGAAAGAGCG 58.041 50.000 9.72 0.00 0.00 5.03
2494 2970 4.080863 AGAGCGGGATGTCTTGTTTCTAAT 60.081 41.667 0.00 0.00 0.00 1.73
2616 3140 4.637276 TGCGTATTGGTTTTCTCTCAAGA 58.363 39.130 0.00 0.00 0.00 3.02
2635 3159 6.115446 TCAAGATGAACTTCACTGACTTTGT 58.885 36.000 0.00 0.00 36.61 2.83
2739 3263 5.887214 TTATATAGAAACTGCTCCTGCCA 57.113 39.130 0.00 0.00 38.71 4.92
2740 3264 4.989875 ATATAGAAACTGCTCCTGCCAT 57.010 40.909 0.00 0.00 38.71 4.40
2743 3267 0.529378 GAAACTGCTCCTGCCATTGG 59.471 55.000 0.00 0.00 38.71 3.16
2745 3269 0.178953 AACTGCTCCTGCCATTGGTT 60.179 50.000 4.26 0.00 38.71 3.67
2747 3271 0.609957 CTGCTCCTGCCATTGGTTGA 60.610 55.000 4.26 0.00 38.71 3.18
2748 3272 0.895100 TGCTCCTGCCATTGGTTGAC 60.895 55.000 4.26 0.00 38.71 3.18
2749 3273 0.895100 GCTCCTGCCATTGGTTGACA 60.895 55.000 4.26 0.00 0.00 3.58
2763 3287 5.559427 TGGTTGACAATTGATATTCACCG 57.441 39.130 13.59 0.00 0.00 4.94
2764 3288 5.249420 TGGTTGACAATTGATATTCACCGA 58.751 37.500 13.59 0.00 0.00 4.69
2765 3289 5.707764 TGGTTGACAATTGATATTCACCGAA 59.292 36.000 13.59 0.00 0.00 4.30
2766 3290 6.207614 TGGTTGACAATTGATATTCACCGAAA 59.792 34.615 13.59 0.00 0.00 3.46
2767 3291 7.093988 TGGTTGACAATTGATATTCACCGAAAT 60.094 33.333 13.59 0.00 0.00 2.17
2768 3292 7.759433 GGTTGACAATTGATATTCACCGAAATT 59.241 33.333 13.59 0.00 0.00 1.82
2769 3293 9.139174 GTTGACAATTGATATTCACCGAAATTT 57.861 29.630 13.59 0.00 0.00 1.82
2770 3294 8.909708 TGACAATTGATATTCACCGAAATTTC 57.090 30.769 13.59 8.20 0.00 2.17
2771 3295 8.739039 TGACAATTGATATTCACCGAAATTTCT 58.261 29.630 13.59 0.00 0.00 2.52
2772 3296 9.226345 GACAATTGATATTCACCGAAATTTCTC 57.774 33.333 13.59 4.97 0.00 2.87
2773 3297 8.190784 ACAATTGATATTCACCGAAATTTCTCC 58.809 33.333 13.59 0.00 0.00 3.71
2774 3298 8.408601 CAATTGATATTCACCGAAATTTCTCCT 58.591 33.333 15.92 0.00 0.00 3.69
2775 3299 6.925610 TGATATTCACCGAAATTTCTCCTG 57.074 37.500 15.92 8.12 0.00 3.86
2776 3300 5.296780 TGATATTCACCGAAATTTCTCCTGC 59.703 40.000 15.92 0.00 0.00 4.85
2777 3301 1.821216 TCACCGAAATTTCTCCTGCC 58.179 50.000 15.92 0.00 0.00 4.85
2778 3302 0.811281 CACCGAAATTTCTCCTGCCC 59.189 55.000 15.92 0.00 0.00 5.36
2779 3303 0.698818 ACCGAAATTTCTCCTGCCCT 59.301 50.000 15.92 0.00 0.00 5.19
2780 3304 1.098050 CCGAAATTTCTCCTGCCCTG 58.902 55.000 15.92 0.00 0.00 4.45
2781 3305 1.098050 CGAAATTTCTCCTGCCCTGG 58.902 55.000 15.92 0.00 0.00 4.45
2782 3306 1.478631 GAAATTTCTCCTGCCCTGGG 58.521 55.000 8.86 8.86 0.00 4.45
2783 3307 0.786435 AAATTTCTCCTGCCCTGGGT 59.214 50.000 15.56 0.00 0.00 4.51
2784 3308 0.786435 AATTTCTCCTGCCCTGGGTT 59.214 50.000 15.56 0.00 0.00 4.11
2785 3309 0.040204 ATTTCTCCTGCCCTGGGTTG 59.960 55.000 15.56 7.35 0.00 3.77
2786 3310 1.065410 TTTCTCCTGCCCTGGGTTGA 61.065 55.000 15.56 7.64 0.00 3.18
2787 3311 1.779061 TTCTCCTGCCCTGGGTTGAC 61.779 60.000 15.56 0.00 0.00 3.18
2788 3312 3.256960 TCCTGCCCTGGGTTGACC 61.257 66.667 15.56 0.00 40.81 4.02
2799 3323 2.524306 TGGGTTGACCATTGATGTTCC 58.476 47.619 2.12 0.00 46.80 3.62
2800 3324 2.158400 TGGGTTGACCATTGATGTTCCA 60.158 45.455 2.12 0.00 46.80 3.53
2801 3325 2.493278 GGGTTGACCATTGATGTTCCAG 59.507 50.000 2.12 0.00 39.85 3.86
2802 3326 2.094545 GGTTGACCATTGATGTTCCAGC 60.095 50.000 0.00 0.00 35.64 4.85
2803 3327 1.452110 TGACCATTGATGTTCCAGCG 58.548 50.000 0.00 0.00 0.00 5.18
2804 3328 1.271325 TGACCATTGATGTTCCAGCGT 60.271 47.619 0.00 0.00 0.00 5.07
2805 3329 1.812571 GACCATTGATGTTCCAGCGTT 59.187 47.619 0.00 0.00 0.00 4.84
2806 3330 2.228822 GACCATTGATGTTCCAGCGTTT 59.771 45.455 0.00 0.00 0.00 3.60
2807 3331 2.627699 ACCATTGATGTTCCAGCGTTTT 59.372 40.909 0.00 0.00 0.00 2.43
2808 3332 2.988493 CCATTGATGTTCCAGCGTTTTG 59.012 45.455 0.00 0.00 0.00 2.44
2809 3333 2.791383 TTGATGTTCCAGCGTTTTGG 57.209 45.000 0.00 0.00 39.70 3.28
2810 3334 0.313672 TGATGTTCCAGCGTTTTGGC 59.686 50.000 0.00 0.00 38.16 4.52
2811 3335 0.729140 GATGTTCCAGCGTTTTGGCG 60.729 55.000 0.00 0.00 38.16 5.69
2812 3336 1.452145 ATGTTCCAGCGTTTTGGCGT 61.452 50.000 0.00 0.00 38.16 5.68
2813 3337 1.657181 GTTCCAGCGTTTTGGCGTG 60.657 57.895 0.00 0.00 38.16 5.34
2814 3338 2.115911 TTCCAGCGTTTTGGCGTGT 61.116 52.632 0.00 0.00 38.16 4.49
2815 3339 0.814410 TTCCAGCGTTTTGGCGTGTA 60.814 50.000 0.00 0.00 38.16 2.90
2816 3340 0.604243 TCCAGCGTTTTGGCGTGTAT 60.604 50.000 0.00 0.00 38.16 2.29
2817 3341 0.239879 CCAGCGTTTTGGCGTGTATT 59.760 50.000 0.00 0.00 38.18 1.89
2818 3342 1.602191 CAGCGTTTTGGCGTGTATTC 58.398 50.000 0.00 0.00 38.18 1.75
2819 3343 1.196808 CAGCGTTTTGGCGTGTATTCT 59.803 47.619 0.00 0.00 38.18 2.40
2820 3344 2.413796 CAGCGTTTTGGCGTGTATTCTA 59.586 45.455 0.00 0.00 38.18 2.10
2821 3345 2.414138 AGCGTTTTGGCGTGTATTCTAC 59.586 45.455 0.00 0.00 38.18 2.59
2822 3346 2.414138 GCGTTTTGGCGTGTATTCTACT 59.586 45.455 0.00 0.00 0.00 2.57
2823 3347 3.483085 GCGTTTTGGCGTGTATTCTACTC 60.483 47.826 0.00 0.00 0.00 2.59
2824 3348 3.061697 CGTTTTGGCGTGTATTCTACTCC 59.938 47.826 0.00 0.00 0.00 3.85
2825 3349 2.973694 TTGGCGTGTATTCTACTCCC 57.026 50.000 0.00 0.00 0.00 4.30
2826 3350 2.154567 TGGCGTGTATTCTACTCCCT 57.845 50.000 0.00 0.00 0.00 4.20
2827 3351 2.029623 TGGCGTGTATTCTACTCCCTC 58.970 52.381 0.00 0.00 0.00 4.30
2828 3352 1.340568 GGCGTGTATTCTACTCCCTCC 59.659 57.143 0.00 0.00 0.00 4.30
2829 3353 1.001597 GCGTGTATTCTACTCCCTCCG 60.002 57.143 0.00 0.00 0.00 4.63
2830 3354 2.295885 CGTGTATTCTACTCCCTCCGT 58.704 52.381 0.00 0.00 0.00 4.69
2831 3355 2.033049 CGTGTATTCTACTCCCTCCGTG 59.967 54.545 0.00 0.00 0.00 4.94
2832 3356 3.285484 GTGTATTCTACTCCCTCCGTGA 58.715 50.000 0.00 0.00 0.00 4.35
2833 3357 3.890147 GTGTATTCTACTCCCTCCGTGAT 59.110 47.826 0.00 0.00 0.00 3.06
2834 3358 4.341520 GTGTATTCTACTCCCTCCGTGATT 59.658 45.833 0.00 0.00 0.00 2.57
2835 3359 5.533903 GTGTATTCTACTCCCTCCGTGATTA 59.466 44.000 0.00 0.00 0.00 1.75
2836 3360 6.208994 GTGTATTCTACTCCCTCCGTGATTAT 59.791 42.308 0.00 0.00 0.00 1.28
2837 3361 6.781014 TGTATTCTACTCCCTCCGTGATTATT 59.219 38.462 0.00 0.00 0.00 1.40
2838 3362 5.531122 TTCTACTCCCTCCGTGATTATTG 57.469 43.478 0.00 0.00 0.00 1.90
2839 3363 4.543689 TCTACTCCCTCCGTGATTATTGT 58.456 43.478 0.00 0.00 0.00 2.71
2840 3364 5.698104 TCTACTCCCTCCGTGATTATTGTA 58.302 41.667 0.00 0.00 0.00 2.41
2841 3365 4.939052 ACTCCCTCCGTGATTATTGTAG 57.061 45.455 0.00 0.00 0.00 2.74
2842 3366 3.069729 ACTCCCTCCGTGATTATTGTAGC 59.930 47.826 0.00 0.00 0.00 3.58
2843 3367 3.035363 TCCCTCCGTGATTATTGTAGCA 58.965 45.455 0.00 0.00 0.00 3.49
2844 3368 3.069586 TCCCTCCGTGATTATTGTAGCAG 59.930 47.826 0.00 0.00 0.00 4.24
2845 3369 3.181465 CCCTCCGTGATTATTGTAGCAGT 60.181 47.826 0.00 0.00 0.00 4.40
2846 3370 4.051922 CCTCCGTGATTATTGTAGCAGTC 58.948 47.826 0.00 0.00 0.00 3.51
2847 3371 4.202161 CCTCCGTGATTATTGTAGCAGTCT 60.202 45.833 0.00 0.00 0.00 3.24
2848 3372 5.339008 TCCGTGATTATTGTAGCAGTCTT 57.661 39.130 0.00 0.00 0.00 3.01
2849 3373 5.348986 TCCGTGATTATTGTAGCAGTCTTC 58.651 41.667 0.00 0.00 0.00 2.87
2850 3374 5.105513 TCCGTGATTATTGTAGCAGTCTTCA 60.106 40.000 0.00 0.00 0.00 3.02
2851 3375 5.580691 CCGTGATTATTGTAGCAGTCTTCAA 59.419 40.000 0.00 0.00 34.76 2.69
2852 3376 6.258727 CCGTGATTATTGTAGCAGTCTTCAAT 59.741 38.462 3.40 3.40 41.31 2.57
2853 3377 7.121911 CGTGATTATTGTAGCAGTCTTCAATG 58.878 38.462 7.21 0.00 39.57 2.82
2854 3378 7.201556 CGTGATTATTGTAGCAGTCTTCAATGT 60.202 37.037 7.21 0.00 39.57 2.71
2855 3379 8.454106 GTGATTATTGTAGCAGTCTTCAATGTT 58.546 33.333 7.21 0.00 39.57 2.71
2856 3380 9.665719 TGATTATTGTAGCAGTCTTCAATGTTA 57.334 29.630 7.21 0.00 39.57 2.41
2857 3381 9.922305 GATTATTGTAGCAGTCTTCAATGTTAC 57.078 33.333 7.21 0.00 39.57 2.50
2858 3382 6.743575 ATTGTAGCAGTCTTCAATGTTACC 57.256 37.500 0.00 0.00 38.40 2.85
2861 3385 3.077359 AGCAGTCTTCAATGTTACCAGC 58.923 45.455 0.00 0.00 0.00 4.85
2947 3478 3.398318 TTGGGGCAGAGTGAGTAGATA 57.602 47.619 0.00 0.00 0.00 1.98
2948 3479 3.398318 TGGGGCAGAGTGAGTAGATAA 57.602 47.619 0.00 0.00 0.00 1.75
2953 3484 3.057174 GGCAGAGTGAGTAGATAATCCCG 60.057 52.174 0.00 0.00 0.00 5.14
2983 3514 8.865978 CACATGTACTTTGATCCAATCATTTTG 58.134 33.333 0.00 0.00 39.39 2.44
3016 3547 1.883926 GGGCACGGTTCTGTTACAAAT 59.116 47.619 0.00 0.00 0.00 2.32
3019 3550 3.423907 GGCACGGTTCTGTTACAAATACG 60.424 47.826 0.00 0.00 0.00 3.06
3020 3551 3.429543 GCACGGTTCTGTTACAAATACGA 59.570 43.478 0.00 0.00 0.00 3.43
3021 3552 4.084433 GCACGGTTCTGTTACAAATACGAA 60.084 41.667 0.00 0.00 0.00 3.85
3022 3553 5.368374 CACGGTTCTGTTACAAATACGAAC 58.632 41.667 6.05 6.05 32.97 3.95
3023 3554 4.148696 ACGGTTCTGTTACAAATACGAACG 59.851 41.667 7.86 0.00 33.73 3.95
3024 3555 4.148696 CGGTTCTGTTACAAATACGAACGT 59.851 41.667 5.03 5.03 33.73 3.99
3025 3556 5.602516 GGTTCTGTTACAAATACGAACGTC 58.397 41.667 2.45 0.00 33.73 4.34
3027 3558 5.811018 TCTGTTACAAATACGAACGTCAC 57.189 39.130 2.45 0.00 0.00 3.67
3029 3560 6.667370 TCTGTTACAAATACGAACGTCACTA 58.333 36.000 2.45 0.00 0.00 2.74
3031 3562 7.268186 TGTTACAAATACGAACGTCACTATG 57.732 36.000 2.45 0.92 0.00 2.23
3032 3563 4.835199 ACAAATACGAACGTCACTATGC 57.165 40.909 2.45 0.00 0.00 3.14
3033 3564 3.615496 ACAAATACGAACGTCACTATGCC 59.385 43.478 2.45 0.00 0.00 4.40
3035 3566 2.267188 TACGAACGTCACTATGCCAC 57.733 50.000 2.45 0.00 0.00 5.01
3036 3567 0.601558 ACGAACGTCACTATGCCACT 59.398 50.000 0.00 0.00 0.00 4.00
3042 3601 1.502231 GTCACTATGCCACTATGCCG 58.498 55.000 0.00 0.00 0.00 5.69
3049 3608 6.071051 TCACTATGCCACTATGCCGATATAAA 60.071 38.462 0.00 0.00 0.00 1.40
3136 3697 6.261603 TCAACGGATCTCGAGCTAATTAGTTA 59.738 38.462 13.91 0.00 42.43 2.24
3137 3698 6.821031 ACGGATCTCGAGCTAATTAGTTAT 57.179 37.500 13.91 0.00 42.43 1.89
3138 3699 7.216973 ACGGATCTCGAGCTAATTAGTTATT 57.783 36.000 13.91 0.00 42.43 1.40
3284 3877 4.082787 CCTGCCACAATTACGACAATTCTT 60.083 41.667 0.00 0.00 0.00 2.52
3498 4107 3.274586 CGCTGGATGTCCATGCCG 61.275 66.667 1.54 2.82 46.46 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.634448 CCGGGCCCAAAATTTTTCTTTTT 59.366 39.130 24.92 0.00 0.00 1.94
19 20 3.218453 CCGGGCCCAAAATTTTTCTTTT 58.782 40.909 24.92 0.00 0.00 2.27
20 21 2.488167 CCCGGGCCCAAAATTTTTCTTT 60.488 45.455 24.92 0.00 0.00 2.52
21 22 1.073125 CCCGGGCCCAAAATTTTTCTT 59.927 47.619 24.92 0.00 0.00 2.52
22 23 0.690192 CCCGGGCCCAAAATTTTTCT 59.310 50.000 24.92 0.00 0.00 2.52
23 24 0.322098 CCCCGGGCCCAAAATTTTTC 60.322 55.000 24.92 0.00 0.00 2.29
24 25 1.764422 CCCCGGGCCCAAAATTTTT 59.236 52.632 24.92 0.00 0.00 1.94
25 26 2.901281 GCCCCGGGCCCAAAATTTT 61.901 57.895 24.92 0.00 44.06 1.82
26 27 3.326578 GCCCCGGGCCCAAAATTT 61.327 61.111 24.92 0.00 44.06 1.82
36 37 4.447342 ATTGGAGCAAGCCCCGGG 62.447 66.667 15.80 15.80 0.00 5.73
37 38 2.830370 GATTGGAGCAAGCCCCGG 60.830 66.667 0.00 0.00 0.00 5.73
38 39 2.830370 GGATTGGAGCAAGCCCCG 60.830 66.667 0.00 0.00 43.25 5.73
49 50 2.918248 TGGCGGATCCAGGATTGG 59.082 61.111 13.41 0.00 46.49 3.16
63 64 0.250467 ACATATCCATCGCCAGTGGC 60.250 55.000 25.07 25.07 46.75 5.01
64 65 1.609061 GGACATATCCATCGCCAGTGG 60.609 57.143 4.20 4.20 45.47 4.00
65 66 1.800805 GGACATATCCATCGCCAGTG 58.199 55.000 0.00 0.00 45.47 3.66
75 76 1.059913 CCTCACCCCTGGACATATCC 58.940 60.000 0.00 0.00 46.48 2.59
76 77 0.398318 GCCTCACCCCTGGACATATC 59.602 60.000 0.00 0.00 0.00 1.63
77 78 0.327480 TGCCTCACCCCTGGACATAT 60.327 55.000 0.00 0.00 0.00 1.78
78 79 0.982852 CTGCCTCACCCCTGGACATA 60.983 60.000 0.00 0.00 0.00 2.29
79 80 2.204136 TGCCTCACCCCTGGACAT 60.204 61.111 0.00 0.00 0.00 3.06
80 81 2.930019 CTGCCTCACCCCTGGACA 60.930 66.667 0.00 0.00 0.00 4.02
81 82 3.721706 CCTGCCTCACCCCTGGAC 61.722 72.222 0.00 0.00 0.00 4.02
129 130 1.207791 ATCTGGTTGCGAGGAAGGAT 58.792 50.000 0.00 0.00 0.00 3.24
138 139 3.617263 GGTAGTGTCTAAATCTGGTTGCG 59.383 47.826 0.00 0.00 0.00 4.85
142 143 3.775316 CCTGGGTAGTGTCTAAATCTGGT 59.225 47.826 0.00 0.00 0.00 4.00
154 155 3.025262 GAGAAGTAGTCCCTGGGTAGTG 58.975 54.545 13.56 0.00 0.00 2.74
171 172 1.137086 GCTTCACCTATCAGCGGAGAA 59.863 52.381 0.00 0.00 31.73 2.87
185 186 1.082756 CGACACGCCAAAGCTTCAC 60.083 57.895 0.00 0.00 36.60 3.18
186 187 2.250939 CCGACACGCCAAAGCTTCA 61.251 57.895 0.00 0.00 36.60 3.02
293 294 2.354503 CCCACATCAGACAGGTCTCTTG 60.355 54.545 0.00 3.18 37.98 3.02
324 325 5.599242 TGAGAGATAGACCTTCGTCTCTCTA 59.401 44.000 25.34 16.75 46.90 2.43
332 333 5.300539 TGGAAAGATGAGAGATAGACCTTCG 59.699 44.000 0.00 0.00 0.00 3.79
350 351 3.059352 ACAACTCGAATCCCTGGAAAG 57.941 47.619 0.00 0.00 0.00 2.62
354 355 3.819564 TGATACAACTCGAATCCCTGG 57.180 47.619 0.00 0.00 0.00 4.45
395 396 0.804989 AGCTAATTTGCACGCCAGAC 59.195 50.000 14.27 0.00 34.99 3.51
402 403 1.831343 CATGCCGAGCTAATTTGCAC 58.169 50.000 14.27 6.93 34.33 4.57
403 404 0.101040 GCATGCCGAGCTAATTTGCA 59.899 50.000 14.27 0.00 36.23 4.08
404 405 0.383231 AGCATGCCGAGCTAATTTGC 59.617 50.000 15.66 3.49 41.32 3.68
458 459 4.098654 CGTCACTCAAGAACTCAGGGATAT 59.901 45.833 0.00 0.00 0.00 1.63
464 465 4.376819 GCATTTCGTCACTCAAGAACTCAG 60.377 45.833 0.00 0.00 0.00 3.35
465 466 3.494626 GCATTTCGTCACTCAAGAACTCA 59.505 43.478 0.00 0.00 0.00 3.41
466 467 3.494626 TGCATTTCGTCACTCAAGAACTC 59.505 43.478 0.00 0.00 0.00 3.01
467 468 3.248602 GTGCATTTCGTCACTCAAGAACT 59.751 43.478 0.00 0.00 0.00 3.01
468 469 3.248602 AGTGCATTTCGTCACTCAAGAAC 59.751 43.478 0.00 0.00 39.11 3.01
469 470 3.466836 AGTGCATTTCGTCACTCAAGAA 58.533 40.909 0.00 0.00 39.11 2.52
470 471 3.111853 AGTGCATTTCGTCACTCAAGA 57.888 42.857 0.00 0.00 39.11 3.02
471 472 4.389992 ACATAGTGCATTTCGTCACTCAAG 59.610 41.667 0.00 0.00 42.06 3.02
472 473 4.314961 ACATAGTGCATTTCGTCACTCAA 58.685 39.130 0.00 0.00 42.06 3.02
473 474 3.925379 ACATAGTGCATTTCGTCACTCA 58.075 40.909 0.00 0.00 42.06 3.41
474 475 4.027621 CGTACATAGTGCATTTCGTCACTC 60.028 45.833 0.00 0.00 42.06 3.51
475 476 3.857665 CGTACATAGTGCATTTCGTCACT 59.142 43.478 0.00 0.00 44.76 3.41
476 477 3.855379 TCGTACATAGTGCATTTCGTCAC 59.145 43.478 0.00 0.00 0.00 3.67
477 478 4.099380 TCGTACATAGTGCATTTCGTCA 57.901 40.909 0.00 0.00 0.00 4.35
478 479 4.085055 CCATCGTACATAGTGCATTTCGTC 60.085 45.833 0.00 0.00 0.00 4.20
479 480 3.802139 CCATCGTACATAGTGCATTTCGT 59.198 43.478 0.00 0.00 0.00 3.85
480 481 4.048504 TCCATCGTACATAGTGCATTTCG 58.951 43.478 0.00 0.00 0.00 3.46
481 482 4.449068 CCTCCATCGTACATAGTGCATTTC 59.551 45.833 0.00 0.00 0.00 2.17
482 483 4.100963 TCCTCCATCGTACATAGTGCATTT 59.899 41.667 0.00 0.00 0.00 2.32
483 484 3.641436 TCCTCCATCGTACATAGTGCATT 59.359 43.478 0.00 0.00 0.00 3.56
484 485 3.230976 TCCTCCATCGTACATAGTGCAT 58.769 45.455 0.00 0.00 0.00 3.96
485 486 2.661718 TCCTCCATCGTACATAGTGCA 58.338 47.619 0.00 0.00 0.00 4.57
486 487 3.728076 TTCCTCCATCGTACATAGTGC 57.272 47.619 0.00 0.00 0.00 4.40
487 488 5.453567 TCATTCCTCCATCGTACATAGTG 57.546 43.478 0.00 0.00 0.00 2.74
488 489 6.672266 ATTCATTCCTCCATCGTACATAGT 57.328 37.500 0.00 0.00 0.00 2.12
489 490 9.658799 ATTTATTCATTCCTCCATCGTACATAG 57.341 33.333 0.00 0.00 0.00 2.23
490 491 9.435688 CATTTATTCATTCCTCCATCGTACATA 57.564 33.333 0.00 0.00 0.00 2.29
491 492 7.094634 GCATTTATTCATTCCTCCATCGTACAT 60.095 37.037 0.00 0.00 0.00 2.29
492 493 6.204688 GCATTTATTCATTCCTCCATCGTACA 59.795 38.462 0.00 0.00 0.00 2.90
493 494 6.348540 GGCATTTATTCATTCCTCCATCGTAC 60.349 42.308 0.00 0.00 0.00 3.67
494 495 5.705441 GGCATTTATTCATTCCTCCATCGTA 59.295 40.000 0.00 0.00 0.00 3.43
495 496 4.520492 GGCATTTATTCATTCCTCCATCGT 59.480 41.667 0.00 0.00 0.00 3.73
496 497 4.763793 AGGCATTTATTCATTCCTCCATCG 59.236 41.667 0.00 0.00 0.00 3.84
497 498 6.661304 AAGGCATTTATTCATTCCTCCATC 57.339 37.500 0.00 0.00 0.00 3.51
498 499 8.551682 TTAAAGGCATTTATTCATTCCTCCAT 57.448 30.769 4.14 0.00 31.07 3.41
499 500 7.069826 CCTTAAAGGCATTTATTCATTCCTCCA 59.930 37.037 4.14 0.00 31.07 3.86
500 501 7.436933 CCTTAAAGGCATTTATTCATTCCTCC 58.563 38.462 4.14 0.00 31.07 4.30
501 502 7.069950 ACCCTTAAAGGCATTTATTCATTCCTC 59.930 37.037 4.14 0.00 32.73 3.71
502 503 6.902974 ACCCTTAAAGGCATTTATTCATTCCT 59.097 34.615 4.14 0.00 32.73 3.36
503 504 7.124573 ACCCTTAAAGGCATTTATTCATTCC 57.875 36.000 4.14 0.00 32.73 3.01
504 505 6.918022 CGACCCTTAAAGGCATTTATTCATTC 59.082 38.462 4.14 0.00 32.73 2.67
505 506 6.379988 ACGACCCTTAAAGGCATTTATTCATT 59.620 34.615 4.14 0.00 32.73 2.57
506 507 5.891551 ACGACCCTTAAAGGCATTTATTCAT 59.108 36.000 4.14 0.00 32.73 2.57
507 508 5.258051 ACGACCCTTAAAGGCATTTATTCA 58.742 37.500 4.14 0.00 32.73 2.57
508 509 5.830000 ACGACCCTTAAAGGCATTTATTC 57.170 39.130 4.14 0.00 32.73 1.75
509 510 6.420638 AGTACGACCCTTAAAGGCATTTATT 58.579 36.000 4.14 0.00 32.73 1.40
510 511 5.997843 AGTACGACCCTTAAAGGCATTTAT 58.002 37.500 4.14 0.00 32.73 1.40
511 512 5.425196 AGTACGACCCTTAAAGGCATTTA 57.575 39.130 0.00 0.00 32.73 1.40
512 513 4.296621 AGTACGACCCTTAAAGGCATTT 57.703 40.909 0.53 0.53 32.73 2.32
513 514 3.994931 AGTACGACCCTTAAAGGCATT 57.005 42.857 0.00 0.00 32.73 3.56
514 515 3.262405 TGAAGTACGACCCTTAAAGGCAT 59.738 43.478 0.00 0.00 32.73 4.40
515 516 2.633967 TGAAGTACGACCCTTAAAGGCA 59.366 45.455 0.00 0.00 32.73 4.75
516 517 3.323751 TGAAGTACGACCCTTAAAGGC 57.676 47.619 0.00 0.00 32.73 4.35
517 518 7.910441 TTTATTGAAGTACGACCCTTAAAGG 57.090 36.000 0.00 0.00 34.30 3.11
518 519 9.821662 CTTTTTATTGAAGTACGACCCTTAAAG 57.178 33.333 0.00 0.00 0.00 1.85
519 520 8.785946 CCTTTTTATTGAAGTACGACCCTTAAA 58.214 33.333 0.00 0.00 0.00 1.52
520 521 8.156165 TCCTTTTTATTGAAGTACGACCCTTAA 58.844 33.333 0.00 0.00 0.00 1.85
521 522 7.678837 TCCTTTTTATTGAAGTACGACCCTTA 58.321 34.615 0.00 0.00 0.00 2.69
522 523 6.536447 TCCTTTTTATTGAAGTACGACCCTT 58.464 36.000 0.00 0.00 0.00 3.95
523 524 6.117975 TCCTTTTTATTGAAGTACGACCCT 57.882 37.500 0.00 0.00 0.00 4.34
524 525 6.806388 TTCCTTTTTATTGAAGTACGACCC 57.194 37.500 0.00 0.00 0.00 4.46
525 526 7.272731 GCATTTCCTTTTTATTGAAGTACGACC 59.727 37.037 0.00 0.00 0.00 4.79
526 527 8.021396 AGCATTTCCTTTTTATTGAAGTACGAC 58.979 33.333 0.00 0.00 0.00 4.34
527 528 8.020819 CAGCATTTCCTTTTTATTGAAGTACGA 58.979 33.333 0.00 0.00 0.00 3.43
528 529 7.201350 GCAGCATTTCCTTTTTATTGAAGTACG 60.201 37.037 0.00 0.00 0.00 3.67
529 530 7.598493 TGCAGCATTTCCTTTTTATTGAAGTAC 59.402 33.333 0.00 0.00 0.00 2.73
530 531 7.598493 GTGCAGCATTTCCTTTTTATTGAAGTA 59.402 33.333 0.00 0.00 0.00 2.24
531 532 6.424812 GTGCAGCATTTCCTTTTTATTGAAGT 59.575 34.615 0.00 0.00 0.00 3.01
532 533 6.647895 AGTGCAGCATTTCCTTTTTATTGAAG 59.352 34.615 0.00 0.00 0.00 3.02
533 534 6.523840 AGTGCAGCATTTCCTTTTTATTGAA 58.476 32.000 0.00 0.00 0.00 2.69
534 535 6.100404 AGTGCAGCATTTCCTTTTTATTGA 57.900 33.333 0.00 0.00 0.00 2.57
535 536 5.927689 TGAGTGCAGCATTTCCTTTTTATTG 59.072 36.000 0.00 0.00 0.00 1.90
536 537 5.928264 GTGAGTGCAGCATTTCCTTTTTATT 59.072 36.000 0.00 0.00 0.00 1.40
537 538 5.010922 TGTGAGTGCAGCATTTCCTTTTTAT 59.989 36.000 0.00 0.00 0.00 1.40
538 539 4.340666 TGTGAGTGCAGCATTTCCTTTTTA 59.659 37.500 0.00 0.00 0.00 1.52
539 540 3.132646 TGTGAGTGCAGCATTTCCTTTTT 59.867 39.130 0.00 0.00 0.00 1.94
540 541 2.694628 TGTGAGTGCAGCATTTCCTTTT 59.305 40.909 0.00 0.00 0.00 2.27
541 542 2.035066 GTGTGAGTGCAGCATTTCCTTT 59.965 45.455 0.00 0.00 0.00 3.11
542 543 1.610522 GTGTGAGTGCAGCATTTCCTT 59.389 47.619 0.00 0.00 0.00 3.36
543 544 1.242076 GTGTGAGTGCAGCATTTCCT 58.758 50.000 0.00 0.00 0.00 3.36
595 596 0.389391 ATCGTAGATGAACGGGGCAG 59.611 55.000 0.00 0.00 45.12 4.85
649 650 2.766970 TAAAACAGCACTTCAACCGC 57.233 45.000 0.00 0.00 0.00 5.68
703 704 6.189859 TCCCCGTTCTGAGTATCTTTTAGTA 58.810 40.000 0.00 0.00 34.92 1.82
711 712 4.767928 AGATACATCCCCGTTCTGAGTATC 59.232 45.833 0.00 0.00 37.61 2.24
712 713 4.524714 CAGATACATCCCCGTTCTGAGTAT 59.475 45.833 0.00 0.00 36.72 2.12
713 714 3.889538 CAGATACATCCCCGTTCTGAGTA 59.110 47.826 0.00 0.00 36.72 2.59
714 715 2.695666 CAGATACATCCCCGTTCTGAGT 59.304 50.000 0.00 0.00 36.72 3.41
715 716 2.036475 CCAGATACATCCCCGTTCTGAG 59.964 54.545 0.00 0.00 36.72 3.35
716 717 2.039418 CCAGATACATCCCCGTTCTGA 58.961 52.381 0.00 0.00 36.72 3.27
718 719 1.762957 CACCAGATACATCCCCGTTCT 59.237 52.381 0.00 0.00 0.00 3.01
719 720 1.810412 GCACCAGATACATCCCCGTTC 60.810 57.143 0.00 0.00 0.00 3.95
720 721 0.180406 GCACCAGATACATCCCCGTT 59.820 55.000 0.00 0.00 0.00 4.44
721 722 0.980754 TGCACCAGATACATCCCCGT 60.981 55.000 0.00 0.00 0.00 5.28
723 724 0.179018 GGTGCACCAGATACATCCCC 60.179 60.000 31.23 0.00 35.64 4.81
724 725 0.532862 CGGTGCACCAGATACATCCC 60.533 60.000 34.16 3.99 35.14 3.85
725 726 0.532862 CCGGTGCACCAGATACATCC 60.533 60.000 34.16 4.55 35.14 3.51
726 727 0.178068 ACCGGTGCACCAGATACATC 59.822 55.000 34.16 5.28 35.14 3.06
727 728 0.178068 GACCGGTGCACCAGATACAT 59.822 55.000 34.16 7.83 35.14 2.29
729 730 0.179108 GAGACCGGTGCACCAGATAC 60.179 60.000 34.16 19.37 35.14 2.24
730 731 1.327690 GGAGACCGGTGCACCAGATA 61.328 60.000 34.16 0.00 35.14 1.98
732 733 3.311110 GGAGACCGGTGCACCAGA 61.311 66.667 34.16 0.00 35.14 3.86
733 734 4.394712 GGGAGACCGGTGCACCAG 62.395 72.222 34.16 26.46 43.64 4.00
762 763 9.668497 GGTACTTCCTGTTCTGAGTATATTTTT 57.332 33.333 0.00 0.00 0.00 1.94
763 764 8.265764 GGGTACTTCCTGTTCTGAGTATATTTT 58.734 37.037 0.00 0.00 36.25 1.82
764 765 7.402071 TGGGTACTTCCTGTTCTGAGTATATTT 59.598 37.037 0.00 0.00 36.25 1.40
765 766 6.901300 TGGGTACTTCCTGTTCTGAGTATATT 59.099 38.462 0.00 0.00 36.25 1.28
766 767 6.441222 TGGGTACTTCCTGTTCTGAGTATAT 58.559 40.000 0.00 0.00 36.25 0.86
767 768 5.834460 TGGGTACTTCCTGTTCTGAGTATA 58.166 41.667 0.00 0.00 36.25 1.47
768 769 4.684724 TGGGTACTTCCTGTTCTGAGTAT 58.315 43.478 0.00 0.00 36.25 2.12
769 770 4.087182 CTGGGTACTTCCTGTTCTGAGTA 58.913 47.826 0.00 0.00 36.25 2.59
770 771 2.900546 CTGGGTACTTCCTGTTCTGAGT 59.099 50.000 0.00 0.00 36.25 3.41
771 772 2.354203 GCTGGGTACTTCCTGTTCTGAG 60.354 54.545 0.00 0.00 36.25 3.35
772 773 1.623811 GCTGGGTACTTCCTGTTCTGA 59.376 52.381 0.00 0.00 36.25 3.27
773 774 1.339151 GGCTGGGTACTTCCTGTTCTG 60.339 57.143 0.00 0.00 36.25 3.02
774 775 0.984995 GGCTGGGTACTTCCTGTTCT 59.015 55.000 0.00 0.00 36.25 3.01
775 776 0.984995 AGGCTGGGTACTTCCTGTTC 59.015 55.000 0.00 0.00 36.25 3.18
776 777 0.984995 GAGGCTGGGTACTTCCTGTT 59.015 55.000 0.00 0.00 36.25 3.16
777 778 0.910088 GGAGGCTGGGTACTTCCTGT 60.910 60.000 0.00 0.00 36.25 4.00
778 779 0.618968 AGGAGGCTGGGTACTTCCTG 60.619 60.000 0.00 0.00 36.25 3.86
779 780 0.119358 AAGGAGGCTGGGTACTTCCT 59.881 55.000 0.00 0.00 36.25 3.36
780 781 0.992695 AAAGGAGGCTGGGTACTTCC 59.007 55.000 0.00 0.00 0.00 3.46
781 782 1.628846 TGAAAGGAGGCTGGGTACTTC 59.371 52.381 0.00 0.00 0.00 3.01
782 783 1.742308 TGAAAGGAGGCTGGGTACTT 58.258 50.000 0.00 0.00 0.00 2.24
783 784 1.630878 CTTGAAAGGAGGCTGGGTACT 59.369 52.381 0.00 0.00 0.00 2.73
784 785 1.628846 TCTTGAAAGGAGGCTGGGTAC 59.371 52.381 0.00 0.00 0.00 3.34
785 786 2.038863 TCTTGAAAGGAGGCTGGGTA 57.961 50.000 0.00 0.00 0.00 3.69
861 875 3.636231 CCAAGAGGCCCGGTCACA 61.636 66.667 0.00 0.00 0.00 3.58
916 944 2.125106 GGATGTGGACCGGTCTGC 60.125 66.667 32.52 24.27 0.00 4.26
958 1003 1.648467 GCTTAGGGTTTCAGCGCAGG 61.648 60.000 11.47 0.20 0.00 4.85
960 1005 3.981308 GCTTAGGGTTTCAGCGCA 58.019 55.556 11.47 0.00 0.00 6.09
1220 1314 1.377333 GGCGTGGAGAAAGGAAGGG 60.377 63.158 0.00 0.00 0.00 3.95
1222 1316 0.250727 TTGGGCGTGGAGAAAGGAAG 60.251 55.000 0.00 0.00 0.00 3.46
1229 1323 1.001633 GAGTAAACTTGGGCGTGGAGA 59.998 52.381 0.00 0.00 0.00 3.71
1235 1329 1.405661 GGAGAGGAGTAAACTTGGGCG 60.406 57.143 0.00 0.00 0.00 6.13
1273 1367 3.958798 AGGATGCTTGGGATCAAGAATTG 59.041 43.478 9.95 0.00 46.52 2.32
1324 1418 2.101415 GCAGAAAACAAGGAGCCAGTTT 59.899 45.455 4.83 4.83 37.08 2.66
1332 1426 5.084818 TCGATATCTGCAGAAAACAAGGA 57.915 39.130 22.50 9.05 0.00 3.36
1385 1479 3.985019 TTGAGAGAGAGACGTACCTCT 57.015 47.619 16.30 16.30 45.53 3.69
1412 1518 0.690192 TCTTCGCCTGGAACCATTCA 59.310 50.000 0.00 0.00 0.00 2.57
1460 1567 2.271800 ACACTGCAATCTAACTAGCGC 58.728 47.619 0.00 0.00 0.00 5.92
1461 1568 2.531912 CGACACTGCAATCTAACTAGCG 59.468 50.000 0.00 0.00 0.00 4.26
1466 1574 4.211374 AGAAACACGACACTGCAATCTAAC 59.789 41.667 0.00 0.00 0.00 2.34
1498 1606 1.133976 CAGCTTAGCAGGGCCAGTATT 60.134 52.381 6.18 0.00 0.00 1.89
1500 1608 1.907739 CAGCTTAGCAGGGCCAGTA 59.092 57.895 6.18 0.00 0.00 2.74
1518 1626 1.260544 AAATTCCCAAGTCCAGCAGC 58.739 50.000 0.00 0.00 0.00 5.25
1639 1747 1.664151 GGTAAGCTTACACATGCCGAC 59.336 52.381 31.98 12.24 35.37 4.79
1662 1770 9.959749 TCAAAATTGTCAAAGTATAACAGTTCC 57.040 29.630 0.00 0.00 0.00 3.62
1694 1803 8.791675 GGTGTCTTATACAGTTATACTAGACCC 58.208 40.741 0.00 0.00 39.29 4.46
1703 1812 9.959721 AAATCAACAGGTGTCTTATACAGTTAT 57.040 29.630 0.00 0.00 39.29 1.89
1728 1837 3.054434 TGCCAAGCTAGCAGGATCTAAAA 60.054 43.478 25.28 3.40 34.69 1.52
1792 1901 4.630894 TTCAAAATCAAGCACGTGTTCT 57.369 36.364 18.38 3.34 0.00 3.01
1825 1934 6.922957 GCTCTCTTCTAATATCCTGTCAACAG 59.077 42.308 3.08 3.08 43.40 3.16
1892 2001 4.458989 GGATCTTTGCACAACTATGTCCAA 59.541 41.667 0.00 0.00 35.44 3.53
1903 2012 2.879756 GCTTACCAGGGATCTTTGCACA 60.880 50.000 0.00 0.00 0.00 4.57
1997 2464 2.041755 TCTGTCTAGAGGCAGAACAGGA 59.958 50.000 11.37 0.00 38.61 3.86
2010 2480 2.487918 ACAGGCTCGCTCTGTCTAG 58.512 57.895 7.06 0.00 41.10 2.43
2031 2501 2.424956 GAGTTCAGGATGGTTGCATTCC 59.575 50.000 0.00 0.00 36.16 3.01
2045 2515 5.073478 GCTTCGTGTAAAATTCGAGTTCAG 58.927 41.667 0.00 0.00 35.13 3.02
2236 2710 8.410673 TCCATACACTGATAGTAGGAATCTTC 57.589 38.462 0.00 0.00 0.00 2.87
2240 2714 9.206690 CCATATCCATACACTGATAGTAGGAAT 57.793 37.037 0.00 0.00 0.00 3.01
2254 2728 5.132648 AGTTTCTTCTGGCCATATCCATACA 59.867 40.000 5.51 0.00 35.22 2.29
2267 2741 2.303022 TGGCAGGAGTAGTTTCTTCTGG 59.697 50.000 4.49 0.00 40.39 3.86
2268 2742 3.685139 TGGCAGGAGTAGTTTCTTCTG 57.315 47.619 0.00 0.00 42.29 3.02
2269 2743 4.566488 CCAATGGCAGGAGTAGTTTCTTCT 60.566 45.833 0.00 0.00 0.00 2.85
2279 2753 0.478072 TGTCAACCAATGGCAGGAGT 59.522 50.000 0.00 0.00 39.16 3.85
2351 2825 6.428465 TCAAGATTAGAATACACGCCAAAACA 59.572 34.615 0.00 0.00 0.00 2.83
2399 2873 4.373348 AAGCGTTAGATAGAAAGCGAGT 57.627 40.909 0.00 0.00 38.62 4.18
2424 2900 2.543037 TCAGACAGCCAGGTACCATA 57.457 50.000 15.94 0.00 0.00 2.74
2429 2905 4.469586 TCAAATACATCAGACAGCCAGGTA 59.530 41.667 0.00 0.00 0.00 3.08
2435 2911 6.093219 ACATTCAGTCAAATACATCAGACAGC 59.907 38.462 0.00 0.00 33.56 4.40
2476 2952 5.253330 TCACCATTAGAAACAAGACATCCC 58.747 41.667 0.00 0.00 0.00 3.85
2494 2970 0.478072 AGCAACCAGTCCAATCACCA 59.522 50.000 0.00 0.00 0.00 4.17
2593 3116 5.245531 TCTTGAGAGAAAACCAATACGCAT 58.754 37.500 0.00 0.00 0.00 4.73
2616 3140 5.674525 TCAGACAAAGTCAGTGAAGTTCAT 58.325 37.500 9.18 0.00 34.60 2.57
2707 3231 9.587772 GAGCAGTTTCTATATAAACTCAGACAA 57.412 33.333 12.05 0.00 45.59 3.18
2708 3232 8.198109 GGAGCAGTTTCTATATAAACTCAGACA 58.802 37.037 12.05 0.00 45.59 3.41
2709 3233 8.417884 AGGAGCAGTTTCTATATAAACTCAGAC 58.582 37.037 12.05 5.53 45.59 3.51
2710 3234 8.417106 CAGGAGCAGTTTCTATATAAACTCAGA 58.583 37.037 12.05 0.00 45.59 3.27
2713 3237 6.425417 GGCAGGAGCAGTTTCTATATAAACTC 59.575 42.308 12.05 8.39 45.59 3.01
2716 3240 6.247229 TGGCAGGAGCAGTTTCTATATAAA 57.753 37.500 0.00 0.00 44.61 1.40
2717 3241 5.887214 TGGCAGGAGCAGTTTCTATATAA 57.113 39.130 0.00 0.00 44.61 0.98
2719 3243 4.989875 ATGGCAGGAGCAGTTTCTATAT 57.010 40.909 0.00 0.00 44.61 0.86
2721 3245 3.285484 CAATGGCAGGAGCAGTTTCTAT 58.715 45.455 0.00 0.00 44.61 1.98
2722 3246 2.618816 CCAATGGCAGGAGCAGTTTCTA 60.619 50.000 0.00 0.00 44.61 2.10
2723 3247 1.542492 CAATGGCAGGAGCAGTTTCT 58.458 50.000 0.00 0.00 44.61 2.52
2724 3248 0.529378 CCAATGGCAGGAGCAGTTTC 59.471 55.000 0.00 0.00 44.61 2.78
2725 3249 0.178953 ACCAATGGCAGGAGCAGTTT 60.179 50.000 0.00 0.00 44.61 2.66
2727 3251 0.896940 CAACCAATGGCAGGAGCAGT 60.897 55.000 0.00 0.00 44.61 4.40
2728 3252 0.609957 TCAACCAATGGCAGGAGCAG 60.610 55.000 0.00 0.00 44.61 4.24
2730 3254 0.895100 TGTCAACCAATGGCAGGAGC 60.895 55.000 0.00 0.00 39.16 4.70
2731 3255 1.619654 TTGTCAACCAATGGCAGGAG 58.380 50.000 0.00 0.00 46.10 3.69
2733 3257 2.299582 TCAATTGTCAACCAATGGCAGG 59.700 45.455 5.13 0.00 46.10 4.85
2734 3258 3.663995 TCAATTGTCAACCAATGGCAG 57.336 42.857 5.13 0.00 46.10 4.85
2735 3259 5.936187 ATATCAATTGTCAACCAATGGCA 57.064 34.783 5.13 0.00 43.04 4.92
2736 3260 6.256321 GTGAATATCAATTGTCAACCAATGGC 59.744 38.462 5.13 0.00 43.04 4.40
2737 3261 6.757947 GGTGAATATCAATTGTCAACCAATGG 59.242 38.462 5.13 0.00 43.04 3.16
2739 3263 6.376864 TCGGTGAATATCAATTGTCAACCAAT 59.623 34.615 5.13 0.00 45.81 3.16
2740 3264 5.707764 TCGGTGAATATCAATTGTCAACCAA 59.292 36.000 5.13 0.00 37.49 3.67
2743 3267 8.687824 AATTTCGGTGAATATCAATTGTCAAC 57.312 30.769 5.13 3.61 0.00 3.18
2745 3269 8.739039 AGAAATTTCGGTGAATATCAATTGTCA 58.261 29.630 12.42 0.00 0.00 3.58
2747 3271 8.190784 GGAGAAATTTCGGTGAATATCAATTGT 58.809 33.333 12.42 0.00 0.00 2.71
2748 3272 8.408601 AGGAGAAATTTCGGTGAATATCAATTG 58.591 33.333 12.42 0.00 0.00 2.32
2749 3273 8.408601 CAGGAGAAATTTCGGTGAATATCAATT 58.591 33.333 12.42 0.00 0.00 2.32
2753 3277 5.278022 GGCAGGAGAAATTTCGGTGAATATC 60.278 44.000 12.42 2.34 0.00 1.63
2754 3278 4.580580 GGCAGGAGAAATTTCGGTGAATAT 59.419 41.667 12.42 0.00 0.00 1.28
2755 3279 3.945285 GGCAGGAGAAATTTCGGTGAATA 59.055 43.478 12.42 0.00 0.00 1.75
2756 3280 2.755103 GGCAGGAGAAATTTCGGTGAAT 59.245 45.455 12.42 0.00 0.00 2.57
2757 3281 2.159382 GGCAGGAGAAATTTCGGTGAA 58.841 47.619 12.42 0.00 0.00 3.18
2758 3282 1.613255 GGGCAGGAGAAATTTCGGTGA 60.613 52.381 12.42 0.00 0.00 4.02
2759 3283 0.811281 GGGCAGGAGAAATTTCGGTG 59.189 55.000 12.42 11.67 0.00 4.94
2760 3284 0.698818 AGGGCAGGAGAAATTTCGGT 59.301 50.000 12.42 0.00 0.00 4.69
2761 3285 1.098050 CAGGGCAGGAGAAATTTCGG 58.902 55.000 12.42 5.39 0.00 4.30
2762 3286 1.098050 CCAGGGCAGGAGAAATTTCG 58.902 55.000 12.42 0.00 0.00 3.46
2763 3287 1.272704 ACCCAGGGCAGGAGAAATTTC 60.273 52.381 4.91 10.33 0.00 2.17
2764 3288 0.786435 ACCCAGGGCAGGAGAAATTT 59.214 50.000 4.91 0.00 0.00 1.82
2765 3289 0.786435 AACCCAGGGCAGGAGAAATT 59.214 50.000 4.91 0.00 0.00 1.82
2766 3290 0.040204 CAACCCAGGGCAGGAGAAAT 59.960 55.000 4.91 0.00 0.00 2.17
2767 3291 1.065410 TCAACCCAGGGCAGGAGAAA 61.065 55.000 4.91 0.00 0.00 2.52
2768 3292 1.463214 TCAACCCAGGGCAGGAGAA 60.463 57.895 4.91 0.00 0.00 2.87
2769 3293 2.206900 TCAACCCAGGGCAGGAGA 59.793 61.111 4.91 0.00 0.00 3.71
2770 3294 2.352805 GTCAACCCAGGGCAGGAG 59.647 66.667 4.91 0.00 0.00 3.69
2771 3295 3.256960 GGTCAACCCAGGGCAGGA 61.257 66.667 4.91 0.00 0.00 3.86
2772 3296 3.579302 TGGTCAACCCAGGGCAGG 61.579 66.667 4.91 0.00 38.72 4.85
2778 3302 5.880584 CTGGAACATCAATGGTCAACCCAG 61.881 50.000 10.06 5.01 46.20 4.45
2779 3303 2.158400 TGGAACATCAATGGTCAACCCA 60.158 45.455 10.06 0.00 46.20 4.51
2780 3304 2.493278 CTGGAACATCAATGGTCAACCC 59.507 50.000 10.06 0.00 46.20 4.11
2781 3305 2.094545 GCTGGAACATCAATGGTCAACC 60.095 50.000 10.06 0.00 46.20 3.77
2782 3306 2.414559 CGCTGGAACATCAATGGTCAAC 60.415 50.000 10.06 0.00 46.20 3.18
2783 3307 1.811965 CGCTGGAACATCAATGGTCAA 59.188 47.619 10.06 0.00 46.20 3.18
2784 3308 1.271325 ACGCTGGAACATCAATGGTCA 60.271 47.619 10.06 0.00 46.20 4.02
2785 3309 1.453155 ACGCTGGAACATCAATGGTC 58.547 50.000 0.00 0.00 43.70 4.02
2786 3310 1.909700 AACGCTGGAACATCAATGGT 58.090 45.000 0.00 0.00 38.20 3.55
2787 3311 2.988493 CAAAACGCTGGAACATCAATGG 59.012 45.455 0.00 0.00 38.20 3.16
2788 3312 2.988493 CCAAAACGCTGGAACATCAATG 59.012 45.455 0.00 0.00 38.96 2.82
2789 3313 2.610232 GCCAAAACGCTGGAACATCAAT 60.610 45.455 3.09 0.00 38.96 2.57
2790 3314 1.269517 GCCAAAACGCTGGAACATCAA 60.270 47.619 3.09 0.00 38.96 2.57
2791 3315 0.313672 GCCAAAACGCTGGAACATCA 59.686 50.000 3.09 0.00 38.96 3.07
2792 3316 0.729140 CGCCAAAACGCTGGAACATC 60.729 55.000 3.09 0.00 38.96 3.06
2793 3317 1.285641 CGCCAAAACGCTGGAACAT 59.714 52.632 3.09 0.00 38.96 2.71
2794 3318 2.115911 ACGCCAAAACGCTGGAACA 61.116 52.632 3.09 0.00 38.96 3.18
2795 3319 1.657181 CACGCCAAAACGCTGGAAC 60.657 57.895 3.09 0.00 38.96 3.62
2796 3320 0.814410 TACACGCCAAAACGCTGGAA 60.814 50.000 3.09 0.00 38.96 3.53
2797 3321 0.604243 ATACACGCCAAAACGCTGGA 60.604 50.000 3.09 0.00 38.96 3.86
2798 3322 0.239879 AATACACGCCAAAACGCTGG 59.760 50.000 0.00 0.00 39.71 4.85
2799 3323 1.196808 AGAATACACGCCAAAACGCTG 59.803 47.619 0.00 0.00 36.19 5.18
2800 3324 1.519408 AGAATACACGCCAAAACGCT 58.481 45.000 0.00 0.00 36.19 5.07
2801 3325 2.414138 AGTAGAATACACGCCAAAACGC 59.586 45.455 0.00 0.00 46.26 4.84
2802 3326 3.061697 GGAGTAGAATACACGCCAAAACG 59.938 47.826 0.00 0.00 46.26 3.60
2803 3327 3.373130 GGGAGTAGAATACACGCCAAAAC 59.627 47.826 0.00 0.00 46.26 2.43
2804 3328 3.262405 AGGGAGTAGAATACACGCCAAAA 59.738 43.478 0.00 0.00 46.26 2.44
2805 3329 2.835764 AGGGAGTAGAATACACGCCAAA 59.164 45.455 0.00 0.00 46.26 3.28
2806 3330 2.429610 GAGGGAGTAGAATACACGCCAA 59.570 50.000 0.00 0.00 46.26 4.52
2807 3331 2.029623 GAGGGAGTAGAATACACGCCA 58.970 52.381 0.00 0.00 46.26 5.69
2808 3332 1.340568 GGAGGGAGTAGAATACACGCC 59.659 57.143 0.00 0.00 46.26 5.68
2809 3333 1.001597 CGGAGGGAGTAGAATACACGC 60.002 57.143 0.00 0.00 46.26 5.34
2810 3334 2.033049 CACGGAGGGAGTAGAATACACG 59.967 54.545 0.00 0.00 46.26 4.49
2811 3335 3.285484 TCACGGAGGGAGTAGAATACAC 58.715 50.000 0.00 0.00 46.26 2.90
2812 3336 3.657398 TCACGGAGGGAGTAGAATACA 57.343 47.619 0.00 0.00 46.26 2.29
2813 3337 6.837471 ATAATCACGGAGGGAGTAGAATAC 57.163 41.667 0.00 0.00 43.47 1.89
2814 3338 6.781014 ACAATAATCACGGAGGGAGTAGAATA 59.219 38.462 0.00 0.00 0.00 1.75
2815 3339 5.602978 ACAATAATCACGGAGGGAGTAGAAT 59.397 40.000 0.00 0.00 0.00 2.40
2816 3340 4.960469 ACAATAATCACGGAGGGAGTAGAA 59.040 41.667 0.00 0.00 0.00 2.10
2817 3341 4.543689 ACAATAATCACGGAGGGAGTAGA 58.456 43.478 0.00 0.00 0.00 2.59
2818 3342 4.939052 ACAATAATCACGGAGGGAGTAG 57.061 45.455 0.00 0.00 0.00 2.57
2819 3343 4.280174 GCTACAATAATCACGGAGGGAGTA 59.720 45.833 0.00 0.00 0.00 2.59
2820 3344 3.069729 GCTACAATAATCACGGAGGGAGT 59.930 47.826 0.00 0.00 0.00 3.85
2821 3345 3.069586 TGCTACAATAATCACGGAGGGAG 59.930 47.826 0.00 0.00 0.00 4.30
2822 3346 3.035363 TGCTACAATAATCACGGAGGGA 58.965 45.455 0.00 0.00 0.00 4.20
2823 3347 3.181465 ACTGCTACAATAATCACGGAGGG 60.181 47.826 0.00 0.00 0.00 4.30
2824 3348 4.051922 GACTGCTACAATAATCACGGAGG 58.948 47.826 0.00 0.00 0.00 4.30
2825 3349 4.938080 AGACTGCTACAATAATCACGGAG 58.062 43.478 0.00 0.00 0.00 4.63
2826 3350 5.105513 TGAAGACTGCTACAATAATCACGGA 60.106 40.000 0.00 0.00 0.00 4.69
2827 3351 5.109210 TGAAGACTGCTACAATAATCACGG 58.891 41.667 0.00 0.00 0.00 4.94
2828 3352 6.647212 TTGAAGACTGCTACAATAATCACG 57.353 37.500 0.00 0.00 0.00 4.35
2829 3353 7.978982 ACATTGAAGACTGCTACAATAATCAC 58.021 34.615 0.00 0.00 32.75 3.06
2830 3354 8.565896 AACATTGAAGACTGCTACAATAATCA 57.434 30.769 0.00 0.00 32.75 2.57
2831 3355 9.922305 GTAACATTGAAGACTGCTACAATAATC 57.078 33.333 0.00 0.00 32.75 1.75
2832 3356 8.893727 GGTAACATTGAAGACTGCTACAATAAT 58.106 33.333 0.00 0.00 32.75 1.28
2833 3357 7.880713 TGGTAACATTGAAGACTGCTACAATAA 59.119 33.333 0.00 0.00 46.17 1.40
2834 3358 7.390823 TGGTAACATTGAAGACTGCTACAATA 58.609 34.615 0.00 0.00 46.17 1.90
2835 3359 6.237901 TGGTAACATTGAAGACTGCTACAAT 58.762 36.000 0.00 0.00 46.17 2.71
2836 3360 5.616270 TGGTAACATTGAAGACTGCTACAA 58.384 37.500 0.00 0.00 46.17 2.41
2837 3361 5.222079 TGGTAACATTGAAGACTGCTACA 57.778 39.130 0.00 0.00 46.17 2.74
2853 3377 3.689649 CACCACCTAAGATTGCTGGTAAC 59.310 47.826 0.00 0.00 33.29 2.50
2854 3378 3.872240 GCACCACCTAAGATTGCTGGTAA 60.872 47.826 0.00 0.00 33.29 2.85
2855 3379 2.355716 GCACCACCTAAGATTGCTGGTA 60.356 50.000 0.00 0.00 33.29 3.25
2856 3380 1.614317 GCACCACCTAAGATTGCTGGT 60.614 52.381 0.00 0.00 35.52 4.00
2857 3381 1.098050 GCACCACCTAAGATTGCTGG 58.902 55.000 0.00 0.00 0.00 4.85
2858 3382 1.825090 TGCACCACCTAAGATTGCTG 58.175 50.000 0.00 0.00 34.18 4.41
2861 3385 3.316308 GCCTAATGCACCACCTAAGATTG 59.684 47.826 0.00 0.00 40.77 2.67
2911 3438 6.068461 TGCCCCAAAATAGTGTGTATTAGA 57.932 37.500 0.00 0.00 0.00 2.10
2919 3446 2.375174 TCACTCTGCCCCAAAATAGTGT 59.625 45.455 0.00 0.00 36.56 3.55
2947 3478 1.204146 AGTACATGTGCCTCGGGATT 58.796 50.000 9.11 0.00 0.00 3.01
2948 3479 1.204146 AAGTACATGTGCCTCGGGAT 58.796 50.000 9.11 0.00 0.00 3.85
2953 3484 3.609853 TGGATCAAAGTACATGTGCCTC 58.390 45.455 9.11 0.00 0.00 4.70
2983 3514 1.401905 CCGTGCCCTGAAATTTAGCTC 59.598 52.381 0.00 0.00 0.00 4.09
3016 3547 1.814394 AGTGGCATAGTGACGTTCGTA 59.186 47.619 0.00 0.00 0.00 3.43
3019 3550 2.540101 GCATAGTGGCATAGTGACGTTC 59.460 50.000 0.00 0.00 0.00 3.95
3020 3551 2.550978 GCATAGTGGCATAGTGACGTT 58.449 47.619 0.00 0.00 0.00 3.99
3021 3552 1.202533 GGCATAGTGGCATAGTGACGT 60.203 52.381 0.00 0.00 43.14 4.34
3022 3553 1.502231 GGCATAGTGGCATAGTGACG 58.498 55.000 0.00 0.00 43.14 4.35
3023 3554 1.068588 TCGGCATAGTGGCATAGTGAC 59.931 52.381 4.39 0.00 43.94 3.67
3024 3555 1.408969 TCGGCATAGTGGCATAGTGA 58.591 50.000 4.39 0.00 43.94 3.41
3025 3556 2.462456 ATCGGCATAGTGGCATAGTG 57.538 50.000 4.39 0.00 43.94 2.74
3027 3558 7.041721 TCTTTTATATCGGCATAGTGGCATAG 58.958 38.462 4.39 0.00 43.94 2.23
3029 3560 5.804639 TCTTTTATATCGGCATAGTGGCAT 58.195 37.500 4.39 0.32 43.94 4.40
3031 3562 6.743575 ATTCTTTTATATCGGCATAGTGGC 57.256 37.500 0.00 0.00 39.85 5.01
3098 3659 5.547465 AGATCCGTTGACTTAAATGTGACA 58.453 37.500 0.00 0.00 0.00 3.58
3099 3660 5.220228 CGAGATCCGTTGACTTAAATGTGAC 60.220 44.000 0.00 0.00 0.00 3.67
3245 3838 0.466922 CAGGTCATTGGGGATGGAGC 60.467 60.000 0.00 0.00 36.37 4.70
3284 3877 3.519510 CCCCTGAAAGTGAAGATGGTCTA 59.480 47.826 0.00 0.00 0.00 2.59
3386 3995 3.648545 AGTCACCTAGGAGCTCTGTTTTT 59.351 43.478 17.98 0.00 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.