Multiple sequence alignment - TraesCS4D01G042000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G042000 chr4D 100.000 3547 0 0 1 3547 19679117 19675571 0.000000e+00 6551.0
1 TraesCS4D01G042000 chr4D 80.421 950 97 57 792 1729 19553809 19552937 2.990000e-180 641.0
2 TraesCS4D01G042000 chr4D 79.022 920 95 54 826 1731 19643587 19642752 1.120000e-149 540.0
3 TraesCS4D01G042000 chr4D 83.274 562 64 20 2197 2749 19642119 19641579 1.140000e-134 490.0
4 TraesCS4D01G042000 chr4D 83.267 502 46 22 2206 2684 19552879 19552393 9.100000e-116 427.0
5 TraesCS4D01G042000 chr4D 79.186 221 28 8 131 350 19685192 19684989 1.720000e-28 137.0
6 TraesCS4D01G042000 chr4D 96.078 51 2 0 2122 2172 19552930 19552880 2.270000e-12 84.2
7 TraesCS4D01G042000 chr4D 94.231 52 2 1 1761 1811 19642461 19642410 1.060000e-10 78.7
8 TraesCS4D01G042000 chr4A 88.462 2392 164 66 565 2888 581277738 581280085 0.000000e+00 2785.0
9 TraesCS4D01G042000 chr4A 82.802 721 73 33 893 1598 581329673 581330357 6.550000e-167 597.0
10 TraesCS4D01G042000 chr4A 80.102 784 80 44 826 1598 581324733 581325451 6.790000e-142 514.0
11 TraesCS4D01G042000 chr4A 82.927 533 58 20 2197 2722 581326476 581326982 1.940000e-122 449.0
12 TraesCS4D01G042000 chr4A 79.883 512 42 31 2197 2689 581330557 581331026 5.710000e-83 318.0
13 TraesCS4D01G042000 chr4A 86.111 180 8 3 3010 3173 581280295 581280473 1.010000e-40 178.0
14 TraesCS4D01G042000 chr4A 89.474 133 9 3 2844 2971 581280084 581280216 2.830000e-36 163.0
15 TraesCS4D01G042000 chr4A 77.474 293 48 9 2261 2549 576601833 576601555 3.670000e-35 159.0
16 TraesCS4D01G042000 chr4A 96.000 75 3 0 2899 2973 581280220 581280294 4.810000e-24 122.0
17 TraesCS4D01G042000 chr4A 90.566 53 3 2 1756 1807 581326126 581326177 6.350000e-08 69.4
18 TraesCS4D01G042000 chr4A 95.349 43 2 0 2136 2178 581330532 581330574 6.350000e-08 69.4
19 TraesCS4D01G042000 chr4B 90.732 1284 79 17 2161 3414 32251259 32249986 0.000000e+00 1676.0
20 TraesCS4D01G042000 chr4B 86.325 1521 104 58 743 2214 32252707 32251242 0.000000e+00 1561.0
21 TraesCS4D01G042000 chr4B 88.722 532 52 5 124 652 32253397 32252871 0.000000e+00 643.0
22 TraesCS4D01G042000 chr4B 80.000 960 104 59 793 1731 32174027 32173135 2.320000e-176 628.0
23 TraesCS4D01G042000 chr4B 80.202 793 85 45 829 1610 32180379 32179648 2.420000e-146 529.0
24 TraesCS4D01G042000 chr4B 84.220 545 61 15 2197 2727 32173096 32172563 1.140000e-139 507.0
25 TraesCS4D01G042000 chr4B 81.937 537 67 20 2197 2725 32178669 32178155 9.100000e-116 427.0
26 TraesCS4D01G042000 chr4B 89.266 177 18 1 3237 3413 110423075 110423250 1.660000e-53 220.0
27 TraesCS4D01G042000 chr4B 90.058 171 16 1 3244 3414 636168110 636167941 1.660000e-53 220.0
28 TraesCS4D01G042000 chr4B 87.963 108 11 2 655 761 32252824 32252718 3.720000e-25 126.0
29 TraesCS4D01G042000 chr4B 95.349 43 2 0 1761 1803 32179000 32178958 6.350000e-08 69.4
30 TraesCS4D01G042000 chr4B 97.143 35 1 0 2144 2178 32178686 32178652 3.820000e-05 60.2
31 TraesCS4D01G042000 chr5A 97.710 131 3 0 3414 3544 31140569 31140699 3.560000e-55 226.0
32 TraesCS4D01G042000 chr5A 90.476 168 14 2 3244 3411 157237927 157237762 1.660000e-53 220.0
33 TraesCS4D01G042000 chr2D 90.588 170 15 1 3244 3413 300882972 300883140 1.280000e-54 224.0
34 TraesCS4D01G042000 chr2D 93.182 132 9 0 3413 3544 391194127 391193996 1.000000e-45 195.0
35 TraesCS4D01G042000 chr5D 89.205 176 17 2 3240 3414 330892288 330892462 5.960000e-53 219.0
36 TraesCS4D01G042000 chr5D 97.059 34 1 0 1510 1543 51846408 51846441 1.380000e-04 58.4
37 TraesCS4D01G042000 chr5B 89.266 177 15 4 3240 3414 632265901 632266075 5.960000e-53 219.0
38 TraesCS4D01G042000 chrUn 88.268 179 21 0 3235 3413 79602814 79602992 7.710000e-52 215.0
39 TraesCS4D01G042000 chrUn 88.268 179 21 0 3235 3413 289415619 289415797 7.710000e-52 215.0
40 TraesCS4D01G042000 chr7B 95.385 130 6 0 3413 3542 1561149 1561278 1.290000e-49 207.0
41 TraesCS4D01G042000 chr3B 95.385 130 6 0 3414 3543 228677911 228678040 1.290000e-49 207.0
42 TraesCS4D01G042000 chr7A 95.495 111 4 1 3415 3525 18887008 18886899 3.640000e-40 176.0
43 TraesCS4D01G042000 chr6D 78.947 133 28 0 3081 3213 71936502 71936370 1.360000e-14 91.6
44 TraesCS4D01G042000 chr1D 100.000 30 0 0 1514 1543 320391514 320391543 4.950000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G042000 chr4D 19675571 19679117 3546 True 6551.000000 6551 100.000000 1 3547 1 chr4D.!!$R1 3546
1 TraesCS4D01G042000 chr4D 19552393 19553809 1416 True 384.066667 641 86.588667 792 2684 3 chr4D.!!$R3 1892
2 TraesCS4D01G042000 chr4D 19641579 19643587 2008 True 369.566667 540 85.509000 826 2749 3 chr4D.!!$R4 1923
3 TraesCS4D01G042000 chr4A 581277738 581280473 2735 False 812.000000 2785 90.011750 565 3173 4 chr4A.!!$F1 2608
4 TraesCS4D01G042000 chr4A 581324733 581331026 6293 False 336.133333 597 85.271500 826 2722 6 chr4A.!!$F2 1896
5 TraesCS4D01G042000 chr4B 32249986 32253397 3411 True 1001.500000 1676 88.435500 124 3414 4 chr4B.!!$R4 3290
6 TraesCS4D01G042000 chr4B 32172563 32174027 1464 True 567.500000 628 82.110000 793 2727 2 chr4B.!!$R2 1934
7 TraesCS4D01G042000 chr4B 32178155 32180379 2224 True 271.400000 529 88.657750 829 2725 4 chr4B.!!$R3 1896

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
41 42 0.163146 GTTGTAAACGCCGAGTCTGC 59.837 55.0 0.0 0.0 36.92 4.26 F
1598 6684 0.030638 TTTGCCTTTTGCTCTGCGAC 59.969 50.0 0.0 0.0 42.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2009 7636 0.178915 AGTAGTGGTGTGGGGTGCTA 60.179 55.0 0.0 0.0 0.0 3.49 R
3430 9493 0.107654 GGCAGGGCTAGTGTTGGTAG 60.108 60.0 0.0 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.811399 TGGGCGATTTTACTCATGTAAAG 57.189 39.130 0.00 0.00 45.71 1.85
23 24 5.250200 TGGGCGATTTTACTCATGTAAAGT 58.750 37.500 0.00 0.00 45.71 2.66
24 25 5.708230 TGGGCGATTTTACTCATGTAAAGTT 59.292 36.000 0.00 0.00 45.71 2.66
25 26 6.027749 GGGCGATTTTACTCATGTAAAGTTG 58.972 40.000 0.00 0.00 45.71 3.16
26 27 6.349033 GGGCGATTTTACTCATGTAAAGTTGT 60.349 38.462 10.77 0.00 45.71 3.32
27 28 7.148373 GGGCGATTTTACTCATGTAAAGTTGTA 60.148 37.037 10.77 0.00 45.71 2.41
28 29 8.231837 GGCGATTTTACTCATGTAAAGTTGTAA 58.768 33.333 10.77 0.00 45.71 2.41
29 30 9.601971 GCGATTTTACTCATGTAAAGTTGTAAA 57.398 29.630 10.77 0.00 45.71 2.01
32 33 8.770850 TTTTACTCATGTAAAGTTGTAAACGC 57.229 30.769 0.00 0.00 45.71 4.84
33 34 6.890558 TTACTCATGTAAAGTTGTAAACGCC 58.109 36.000 0.00 0.00 41.65 5.68
34 35 6.346758 TTACTCATGTAAAGTTGTAAACGCCG 60.347 38.462 0.00 0.00 41.65 6.46
35 36 8.422462 TTACTCATGTAAAGTTGTAAACGCCGA 61.422 37.037 0.00 0.00 41.65 5.54
41 42 0.163146 GTTGTAAACGCCGAGTCTGC 59.837 55.000 0.00 0.00 36.92 4.26
42 43 0.249531 TTGTAAACGCCGAGTCTGCA 60.250 50.000 7.35 0.00 0.00 4.41
43 44 0.249531 TGTAAACGCCGAGTCTGCAA 60.250 50.000 7.35 0.00 0.00 4.08
44 45 1.076332 GTAAACGCCGAGTCTGCAAT 58.924 50.000 7.35 0.00 0.00 3.56
45 46 1.060698 GTAAACGCCGAGTCTGCAATC 59.939 52.381 7.35 0.00 0.00 2.67
46 47 0.602638 AAACGCCGAGTCTGCAATCA 60.603 50.000 7.35 0.00 0.00 2.57
47 48 1.016130 AACGCCGAGTCTGCAATCAG 61.016 55.000 7.35 0.00 41.67 2.90
48 49 1.153765 CGCCGAGTCTGCAATCAGA 60.154 57.895 7.35 0.00 46.43 3.27
88 89 8.932945 AAAAGAAAGAAAGACCTGCTTAAAAG 57.067 30.769 0.00 0.00 35.24 2.27
89 90 7.646548 AAGAAAGAAAGACCTGCTTAAAAGT 57.353 32.000 0.00 0.00 35.24 2.66
90 91 7.265647 AGAAAGAAAGACCTGCTTAAAAGTC 57.734 36.000 0.00 0.00 35.24 3.01
91 92 6.828785 AGAAAGAAAGACCTGCTTAAAAGTCA 59.171 34.615 0.00 0.00 35.24 3.41
92 93 7.503902 AGAAAGAAAGACCTGCTTAAAAGTCAT 59.496 33.333 0.00 0.00 35.24 3.06
93 94 7.588497 AAGAAAGACCTGCTTAAAAGTCATT 57.412 32.000 0.00 0.00 35.24 2.57
94 95 7.588497 AGAAAGACCTGCTTAAAAGTCATTT 57.412 32.000 0.00 0.00 35.24 2.32
95 96 7.428826 AGAAAGACCTGCTTAAAAGTCATTTG 58.571 34.615 0.00 0.00 35.24 2.32
96 97 6.715347 AAGACCTGCTTAAAAGTCATTTGT 57.285 33.333 0.00 0.00 34.31 2.83
97 98 7.817418 AAGACCTGCTTAAAAGTCATTTGTA 57.183 32.000 0.00 0.00 34.31 2.41
98 99 7.817418 AGACCTGCTTAAAAGTCATTTGTAA 57.183 32.000 0.00 0.00 32.27 2.41
99 100 7.649057 AGACCTGCTTAAAAGTCATTTGTAAC 58.351 34.615 0.00 0.00 32.27 2.50
100 101 7.502561 AGACCTGCTTAAAAGTCATTTGTAACT 59.497 33.333 0.00 0.00 32.27 2.24
101 102 7.649057 ACCTGCTTAAAAGTCATTTGTAACTC 58.351 34.615 0.00 0.00 32.27 3.01
102 103 7.084486 CCTGCTTAAAAGTCATTTGTAACTCC 58.916 38.462 0.00 0.00 32.27 3.85
103 104 7.255451 CCTGCTTAAAAGTCATTTGTAACTCCA 60.255 37.037 0.00 0.00 32.27 3.86
104 105 8.001881 TGCTTAAAAGTCATTTGTAACTCCAA 57.998 30.769 0.00 0.00 32.27 3.53
105 106 8.637986 TGCTTAAAAGTCATTTGTAACTCCAAT 58.362 29.630 0.00 0.00 32.27 3.16
106 107 9.476202 GCTTAAAAGTCATTTGTAACTCCAATT 57.524 29.630 0.00 0.00 32.27 2.32
110 111 9.665719 AAAAGTCATTTGTAACTCCAATTTGTT 57.334 25.926 0.00 0.00 0.00 2.83
111 112 8.871686 AAGTCATTTGTAACTCCAATTTGTTC 57.128 30.769 0.00 0.00 0.00 3.18
112 113 8.237811 AGTCATTTGTAACTCCAATTTGTTCT 57.762 30.769 0.00 0.00 0.00 3.01
113 114 8.352942 AGTCATTTGTAACTCCAATTTGTTCTC 58.647 33.333 0.00 0.00 0.00 2.87
114 115 7.595130 GTCATTTGTAACTCCAATTTGTTCTCC 59.405 37.037 0.00 0.00 0.00 3.71
115 116 6.399639 TTTGTAACTCCAATTTGTTCTCCC 57.600 37.500 0.00 0.00 0.00 4.30
116 117 5.055265 TGTAACTCCAATTTGTTCTCCCA 57.945 39.130 0.00 0.00 0.00 4.37
117 118 5.640147 TGTAACTCCAATTTGTTCTCCCAT 58.360 37.500 0.00 0.00 0.00 4.00
118 119 6.074648 TGTAACTCCAATTTGTTCTCCCATT 58.925 36.000 0.00 0.00 0.00 3.16
119 120 6.553100 TGTAACTCCAATTTGTTCTCCCATTT 59.447 34.615 0.00 0.00 0.00 2.32
120 121 6.499106 AACTCCAATTTGTTCTCCCATTTT 57.501 33.333 0.00 0.00 0.00 1.82
121 122 6.101650 ACTCCAATTTGTTCTCCCATTTTC 57.898 37.500 0.00 0.00 0.00 2.29
122 123 5.132897 TCCAATTTGTTCTCCCATTTTCG 57.867 39.130 0.00 0.00 0.00 3.46
123 124 3.679502 CCAATTTGTTCTCCCATTTTCGC 59.320 43.478 0.00 0.00 0.00 4.70
124 125 4.305769 CAATTTGTTCTCCCATTTTCGCA 58.694 39.130 0.00 0.00 0.00 5.10
125 126 3.363341 TTTGTTCTCCCATTTTCGCAC 57.637 42.857 0.00 0.00 0.00 5.34
126 127 1.974265 TGTTCTCCCATTTTCGCACA 58.026 45.000 0.00 0.00 0.00 4.57
165 166 6.323203 TCTTCTGAAAAGCAAGGAAATCAG 57.677 37.500 0.00 0.00 36.50 2.90
177 178 6.716628 AGCAAGGAAATCAGACAAAATGACTA 59.283 34.615 0.00 0.00 0.00 2.59
183 184 8.352942 GGAAATCAGACAAAATGACTAAACAGT 58.647 33.333 0.00 0.00 0.00 3.55
185 186 8.450578 AATCAGACAAAATGACTAAACAGTGA 57.549 30.769 0.00 0.00 0.00 3.41
188 189 7.012327 TCAGACAAAATGACTAAACAGTGAAGG 59.988 37.037 0.00 0.00 0.00 3.46
194 195 1.692519 ACTAAACAGTGAAGGCGGAGT 59.307 47.619 0.00 0.00 0.00 3.85
219 220 0.872388 GTGCTACCAAACGAACTGGG 59.128 55.000 0.00 0.00 38.36 4.45
220 221 0.887387 TGCTACCAAACGAACTGGGC 60.887 55.000 0.00 0.00 38.36 5.36
223 224 0.881159 TACCAAACGAACTGGGCACG 60.881 55.000 0.00 0.00 38.36 5.34
238 239 1.517257 CACGAGACCCGCATCAGTC 60.517 63.158 0.00 0.00 43.32 3.51
255 256 6.406624 GCATCAGTCTTCCATTTCCATGATTT 60.407 38.462 0.00 0.00 31.07 2.17
256 257 6.764308 TCAGTCTTCCATTTCCATGATTTC 57.236 37.500 0.00 0.00 31.07 2.17
261 262 7.890127 AGTCTTCCATTTCCATGATTTCTTACA 59.110 33.333 0.00 0.00 31.07 2.41
273 274 1.886886 TTCTTACAAACAGCCCGGTC 58.113 50.000 0.00 0.00 0.00 4.79
300 301 2.388232 AATCGCTTTCCACGCCGTC 61.388 57.895 0.00 0.00 0.00 4.79
332 333 4.546570 CCCGCGATTTTCTTTCTTTTTCT 58.453 39.130 8.23 0.00 0.00 2.52
358 359 1.135731 GAGAGCAGAGTCCACGTCG 59.864 63.158 0.00 0.00 0.00 5.12
360 361 1.173444 AGAGCAGAGTCCACGTCGTT 61.173 55.000 0.00 0.00 0.00 3.85
361 362 1.004277 GAGCAGAGTCCACGTCGTTG 61.004 60.000 0.00 0.00 0.00 4.10
365 366 0.462789 AGAGTCCACGTCGTTGGTTT 59.537 50.000 0.00 0.00 37.93 3.27
379 380 3.399330 GTTGGTTTCTTCCACGATCTCA 58.601 45.455 0.00 0.00 37.20 3.27
380 381 3.319137 TGGTTTCTTCCACGATCTCAG 57.681 47.619 0.00 0.00 31.96 3.35
391 392 2.011222 ACGATCTCAGACCGAAGACTC 58.989 52.381 0.00 0.00 0.00 3.36
419 420 1.445754 CTCTGCCTCTGTGTGCTCG 60.446 63.158 0.00 0.00 0.00 5.03
421 422 2.025969 CTGCCTCTGTGTGCTCGTG 61.026 63.158 0.00 0.00 0.00 4.35
422 423 2.740055 GCCTCTGTGTGCTCGTGG 60.740 66.667 0.00 0.00 0.00 4.94
423 424 2.740055 CCTCTGTGTGCTCGTGGC 60.740 66.667 0.00 0.00 42.22 5.01
424 425 2.341543 CTCTGTGTGCTCGTGGCT 59.658 61.111 5.00 0.00 42.39 4.75
425 426 1.735920 CTCTGTGTGCTCGTGGCTC 60.736 63.158 5.00 2.44 42.39 4.70
426 427 3.108289 CTGTGTGCTCGTGGCTCG 61.108 66.667 1.94 1.94 42.39 5.03
427 428 3.848347 CTGTGTGCTCGTGGCTCGT 62.848 63.158 8.94 0.00 42.39 4.18
428 429 3.406361 GTGTGCTCGTGGCTCGTG 61.406 66.667 8.94 7.73 42.39 4.35
435 436 4.436998 CGTGGCTCGTGGGTCTCC 62.437 72.222 0.00 0.00 34.52 3.71
436 437 3.311110 GTGGCTCGTGGGTCTCCA 61.311 66.667 0.00 0.00 41.58 3.86
443 444 0.768622 TCGTGGGTCTCCAAAACCAT 59.231 50.000 0.00 0.00 46.04 3.55
445 446 1.256812 GTGGGTCTCCAAAACCATGG 58.743 55.000 11.19 11.19 46.04 3.66
504 511 1.261619 GATGATTCCAATGGCGACGTC 59.738 52.381 5.18 5.18 0.00 4.34
549 556 1.001641 CCAGCCTCCCTTTGACCTG 60.002 63.158 0.00 0.00 0.00 4.00
550 557 1.492133 CCAGCCTCCCTTTGACCTGA 61.492 60.000 0.00 0.00 0.00 3.86
588 595 4.077822 CAAAGCTCTCTCCAGGTCAAATT 58.922 43.478 0.00 0.00 0.00 1.82
601 608 7.153985 TCCAGGTCAAATTGAACATGAAAATC 58.846 34.615 13.99 0.00 36.30 2.17
603 610 6.369615 CAGGTCAAATTGAACATGAAAATCCC 59.630 38.462 13.99 0.00 36.30 3.85
624 631 4.259610 CCCAAAAACAATTGAACGTGTTCG 60.260 41.667 13.59 0.00 42.28 3.95
648 657 6.742718 CGTTCCAAATTAGTAAGCACTCAATG 59.257 38.462 0.00 0.00 36.14 2.82
671 724 8.804688 ATGCTTACTATCTATCGTCTTGAAAC 57.195 34.615 0.00 0.00 0.00 2.78
727 780 1.541147 CAATGCCTCGCTGGAAAAAGA 59.459 47.619 0.00 0.00 38.35 2.52
729 782 2.779755 TGCCTCGCTGGAAAAAGATA 57.220 45.000 0.00 0.00 38.35 1.98
739 792 4.637977 GCTGGAAAAAGATAAGGGACAGAG 59.362 45.833 0.00 0.00 0.00 3.35
743 797 3.508952 AAAGATAAGGGACAGAGGGGA 57.491 47.619 0.00 0.00 0.00 4.81
744 798 2.785357 AGATAAGGGACAGAGGGGAG 57.215 55.000 0.00 0.00 0.00 4.30
752 806 1.363246 GACAGAGGGGAGAAAAGGGT 58.637 55.000 0.00 0.00 0.00 4.34
765 819 7.052873 GGGAGAAAAGGGTAAGTAATTAGGAC 58.947 42.308 0.00 0.00 0.00 3.85
836 919 1.120530 GAGGGAATCGGTCAAGGCTA 58.879 55.000 0.00 0.00 0.00 3.93
880 968 7.412853 AACTTATTCTGGGACTTCTCTAGAC 57.587 40.000 0.00 0.00 0.00 2.59
907 1007 7.461749 CCTCCACTCTCTCTCTCTATAAGATT 58.538 42.308 0.00 0.00 32.19 2.40
917 1017 5.765677 TCTCTCTATAAGATTGACCTCCACG 59.234 44.000 0.00 0.00 32.19 4.94
947 1047 3.887716 CCATTCCCATCCAATCTCAGTTC 59.112 47.826 0.00 0.00 0.00 3.01
964 1064 5.515106 TCAGTTCCCAAGGAAGAAAGAAAA 58.485 37.500 0.00 0.00 42.88 2.29
965 1065 6.136155 TCAGTTCCCAAGGAAGAAAGAAAAT 58.864 36.000 0.00 0.00 42.88 1.82
966 1066 6.265422 TCAGTTCCCAAGGAAGAAAGAAAATC 59.735 38.462 0.00 0.00 42.88 2.17
967 1067 5.540337 AGTTCCCAAGGAAGAAAGAAAATCC 59.460 40.000 0.00 0.00 42.88 3.01
969 1069 5.079643 TCCCAAGGAAGAAAGAAAATCCAG 58.920 41.667 0.00 0.00 34.30 3.86
985 1101 1.898472 TCCAGCAGAGAAGAGACCAAG 59.102 52.381 0.00 0.00 0.00 3.61
986 1102 1.066286 CCAGCAGAGAAGAGACCAAGG 60.066 57.143 0.00 0.00 0.00 3.61
987 1103 1.622811 CAGCAGAGAAGAGACCAAGGT 59.377 52.381 0.00 0.00 0.00 3.50
988 1104 1.622811 AGCAGAGAAGAGACCAAGGTG 59.377 52.381 0.00 0.00 0.00 4.00
1022 1138 1.669115 CGGTGTTGGTGGAGCTGAG 60.669 63.158 0.00 0.00 0.00 3.35
1171 1313 5.184479 TGCTTCTTGATTTGATTCTTGGAGG 59.816 40.000 0.00 0.00 0.00 4.30
1377 6435 4.376819 CGAGTTGACTGACTGAATTCTTGC 60.377 45.833 7.05 0.00 0.00 4.01
1381 6439 1.089920 CTGACTGAATTCTTGCGGGG 58.910 55.000 7.05 0.00 0.00 5.73
1598 6684 0.030638 TTTGCCTTTTGCTCTGCGAC 59.969 50.000 0.00 0.00 42.00 5.19
1599 6685 0.819259 TTGCCTTTTGCTCTGCGACT 60.819 50.000 0.00 0.00 42.00 4.18
1600 6686 1.208614 GCCTTTTGCTCTGCGACTG 59.791 57.895 0.00 0.00 36.87 3.51
1601 6687 1.871772 CCTTTTGCTCTGCGACTGG 59.128 57.895 0.00 0.00 0.00 4.00
1602 6688 0.886490 CCTTTTGCTCTGCGACTGGT 60.886 55.000 0.00 0.00 0.00 4.00
1603 6689 0.514691 CTTTTGCTCTGCGACTGGTC 59.485 55.000 0.00 0.00 0.00 4.02
1604 6690 0.884704 TTTTGCTCTGCGACTGGTCC 60.885 55.000 0.00 0.00 0.00 4.46
1605 6691 2.038814 TTTGCTCTGCGACTGGTCCA 62.039 55.000 0.00 0.00 0.00 4.02
1606 6692 1.830587 TTGCTCTGCGACTGGTCCAT 61.831 55.000 0.00 0.00 0.00 3.41
1607 6693 0.970427 TGCTCTGCGACTGGTCCATA 60.970 55.000 0.00 0.00 0.00 2.74
1608 6694 0.390860 GCTCTGCGACTGGTCCATAT 59.609 55.000 0.00 0.00 0.00 1.78
1609 6695 1.871408 GCTCTGCGACTGGTCCATATG 60.871 57.143 0.00 0.00 0.00 1.78
1610 6696 0.104855 TCTGCGACTGGTCCATATGC 59.895 55.000 0.00 0.00 0.00 3.14
1611 6697 0.179076 CTGCGACTGGTCCATATGCA 60.179 55.000 10.54 10.54 0.00 3.96
1612 6698 0.179076 TGCGACTGGTCCATATGCAG 60.179 55.000 7.70 2.27 0.00 4.41
1613 6699 0.179073 GCGACTGGTCCATATGCAGT 60.179 55.000 12.57 12.57 0.00 4.40
1614 6700 1.743772 GCGACTGGTCCATATGCAGTT 60.744 52.381 13.56 1.57 0.00 3.16
1615 6701 1.935873 CGACTGGTCCATATGCAGTTG 59.064 52.381 13.56 12.86 0.00 3.16
1616 6702 2.418609 CGACTGGTCCATATGCAGTTGA 60.419 50.000 17.80 0.15 30.88 3.18
1617 6703 3.742327 CGACTGGTCCATATGCAGTTGAT 60.742 47.826 17.80 0.00 30.88 2.57
1618 6704 4.202441 GACTGGTCCATATGCAGTTGATT 58.798 43.478 13.56 0.00 0.00 2.57
1619 6705 4.202441 ACTGGTCCATATGCAGTTGATTC 58.798 43.478 8.23 0.00 0.00 2.52
1620 6706 4.201657 CTGGTCCATATGCAGTTGATTCA 58.798 43.478 0.00 0.00 0.00 2.57
1621 6707 4.201657 TGGTCCATATGCAGTTGATTCAG 58.798 43.478 0.00 0.00 0.00 3.02
1622 6708 4.080413 TGGTCCATATGCAGTTGATTCAGA 60.080 41.667 0.00 0.00 0.00 3.27
1623 6709 4.883585 GGTCCATATGCAGTTGATTCAGAA 59.116 41.667 0.00 0.00 0.00 3.02
1624 6710 5.533903 GGTCCATATGCAGTTGATTCAGAAT 59.466 40.000 0.00 0.00 0.00 2.40
1635 6721 7.644551 GCAGTTGATTCAGAATTTCAGATGATC 59.355 37.037 0.00 0.00 0.00 2.92
1636 6722 8.129840 CAGTTGATTCAGAATTTCAGATGATCC 58.870 37.037 0.00 0.00 0.00 3.36
1639 6725 7.571025 TGATTCAGAATTTCAGATGATCCTGA 58.429 34.615 0.00 0.00 41.06 3.86
1653 6882 5.902613 TGATCCTGACATCCAAATCAAAC 57.097 39.130 0.00 0.00 29.32 2.93
1655 6884 3.081061 TCCTGACATCCAAATCAAACCG 58.919 45.455 0.00 0.00 0.00 4.44
1656 6885 2.164219 CCTGACATCCAAATCAAACCGG 59.836 50.000 0.00 0.00 0.00 5.28
1658 6887 3.226777 TGACATCCAAATCAAACCGGTT 58.773 40.909 15.86 15.86 0.00 4.44
1676 6908 3.356290 GGTTGGGTGTGAAGCAATAGAT 58.644 45.455 0.00 0.00 0.00 1.98
1701 6933 4.022068 TCCACTTGATTTCCAGCATGTTTC 60.022 41.667 0.00 0.00 0.00 2.78
1710 6944 5.689383 TTCCAGCATGTTTCACTACTTTC 57.311 39.130 0.00 0.00 0.00 2.62
1730 6965 4.494091 TCCTTAGGAAATTCTCAGCCTG 57.506 45.455 0.00 0.00 32.04 4.85
1732 6967 4.536090 TCCTTAGGAAATTCTCAGCCTGAA 59.464 41.667 0.00 0.00 32.04 3.02
1733 6968 5.192522 TCCTTAGGAAATTCTCAGCCTGAAT 59.807 40.000 0.00 0.00 35.88 2.57
1734 6969 5.890419 CCTTAGGAAATTCTCAGCCTGAATT 59.110 40.000 0.00 0.00 43.44 2.17
1747 6998 5.068198 TCAGCCTGAATTAGCCATTTGATTC 59.932 40.000 0.00 0.00 0.00 2.52
1856 7477 0.037975 CCAAGCCATGTCAAAGGTGC 60.038 55.000 0.00 0.00 0.00 5.01
1916 7543 4.816925 ACCTGAAGTAGCTTTGAAGTGTTC 59.183 41.667 0.00 0.00 0.00 3.18
1933 7560 1.140312 TTCCTTCAACCTCCTGCACT 58.860 50.000 0.00 0.00 0.00 4.40
1935 7562 1.239968 CCTTCAACCTCCTGCACTGC 61.240 60.000 0.00 0.00 0.00 4.40
1936 7563 0.535780 CTTCAACCTCCTGCACTGCA 60.536 55.000 3.11 3.11 36.92 4.41
2001 7628 3.085947 TGAGGCCCCAGCAGCTAG 61.086 66.667 0.00 0.00 42.56 3.42
2002 7629 3.086600 GAGGCCCCAGCAGCTAGT 61.087 66.667 0.00 0.00 42.56 2.57
2004 7631 1.306997 AGGCCCCAGCAGCTAGTAA 60.307 57.895 0.00 0.00 42.56 2.24
2006 7633 1.602237 GCCCCAGCAGCTAGTAACA 59.398 57.895 0.00 0.00 39.53 2.41
2007 7634 0.462759 GCCCCAGCAGCTAGTAACAG 60.463 60.000 0.00 0.00 39.53 3.16
2008 7635 0.905357 CCCCAGCAGCTAGTAACAGT 59.095 55.000 0.00 0.00 0.00 3.55
2009 7636 1.279271 CCCCAGCAGCTAGTAACAGTT 59.721 52.381 0.00 0.00 0.00 3.16
2010 7637 2.500098 CCCCAGCAGCTAGTAACAGTTA 59.500 50.000 0.00 0.00 0.00 2.24
2011 7638 3.430929 CCCCAGCAGCTAGTAACAGTTAG 60.431 52.174 0.00 0.00 0.00 2.34
2012 7639 3.190874 CCAGCAGCTAGTAACAGTTAGC 58.809 50.000 0.00 0.00 41.99 3.09
2013 7640 3.368427 CCAGCAGCTAGTAACAGTTAGCA 60.368 47.826 8.86 0.00 43.65 3.49
2014 7641 3.614616 CAGCAGCTAGTAACAGTTAGCAC 59.385 47.826 8.86 1.66 43.65 4.40
2015 7642 2.930682 GCAGCTAGTAACAGTTAGCACC 59.069 50.000 8.86 0.00 43.65 5.01
2016 7643 3.522553 CAGCTAGTAACAGTTAGCACCC 58.477 50.000 8.86 0.00 43.65 4.61
2020 7647 2.051692 AGTAACAGTTAGCACCCCACA 58.948 47.619 0.00 0.00 0.00 4.17
2030 7657 1.374947 CACCCCACACCACTACTGG 59.625 63.158 0.00 0.00 44.26 4.00
2045 7678 2.175878 ACTGGTTGTCTGCACATCTC 57.824 50.000 0.00 0.00 30.55 2.75
2133 7805 7.774625 TCCATTCACATTGCATCATAAAGTAGA 59.225 33.333 0.00 0.00 0.00 2.59
2189 8017 4.141251 ACCTAAGCTTCTCAGGGTCAAAAA 60.141 41.667 16.43 0.00 33.48 1.94
2229 8099 3.327757 AGCTTCTGTCCTATGTCAACCAA 59.672 43.478 0.00 0.00 0.00 3.67
2324 8208 5.010922 TGAACCAAATTTGCAGCTTATGACT 59.989 36.000 12.92 0.00 0.00 3.41
2327 8211 4.082081 CCAAATTTGCAGCTTATGACTCCA 60.082 41.667 12.92 0.00 0.00 3.86
2343 8231 1.257936 CTCCAAATAACGCGTCGATGG 59.742 52.381 14.44 18.63 0.00 3.51
2351 8239 2.435938 GCGTCGATGGGCCTGAAA 60.436 61.111 4.53 0.00 0.00 2.69
2358 8246 1.269413 CGATGGGCCTGAAATTGCATC 60.269 52.381 4.53 3.36 0.00 3.91
2375 8263 3.803555 GCATCGGCATAGAAGAATTTCG 58.196 45.455 0.00 0.00 40.72 3.46
2388 8279 7.755582 AGAAGAATTTCGTTTCCTTTTTGTG 57.244 32.000 0.00 0.00 38.38 3.33
2543 8437 1.770658 CTTGTCATCAGGGAGGCCATA 59.229 52.381 5.01 0.00 0.00 2.74
2557 8451 2.751991 CCATATGAGGCTCCGGAGT 58.248 57.895 31.43 14.17 0.00 3.85
2558 8452 0.605589 CCATATGAGGCTCCGGAGTC 59.394 60.000 29.00 29.00 0.00 3.36
2559 8453 0.242286 CATATGAGGCTCCGGAGTCG 59.758 60.000 31.43 12.53 38.27 4.18
2583 8479 3.110705 ACTGATGCCTGACTTGATAGGT 58.889 45.455 0.00 0.00 36.44 3.08
2676 8590 4.487714 TTACTCACAGAATAAGGCTGGG 57.512 45.455 0.00 0.00 38.13 4.45
2685 8599 1.668826 ATAAGGCTGGGTGGAGACAA 58.331 50.000 0.00 0.00 46.06 3.18
2826 8747 8.730427 CCGAAGAATTTTAACGTTATGTAATGC 58.270 33.333 9.18 8.20 0.00 3.56
2847 8768 0.933097 GTATGCGCCTGTGTCTGATG 59.067 55.000 4.18 0.00 0.00 3.07
2882 8803 0.533085 GACGCAATCTTAGGCCTCCC 60.533 60.000 9.68 0.00 0.00 4.30
2938 8983 4.543590 ACAGGACATGTAGAGGAAACAG 57.456 45.455 0.00 0.00 41.60 3.16
2939 8984 3.904339 ACAGGACATGTAGAGGAAACAGT 59.096 43.478 0.00 0.00 41.60 3.55
2942 8987 3.997021 GGACATGTAGAGGAAACAGTGTG 59.003 47.826 0.00 0.00 0.00 3.82
2973 9020 4.094646 TCACGCCATGGCCATCGT 62.095 61.111 30.79 22.85 37.98 3.73
2977 9024 2.755469 GCCATGGCCATCGTTGGT 60.755 61.111 27.24 0.00 45.57 3.67
3018 9065 0.668535 AAACCTCGCCAAGAAACAGC 59.331 50.000 0.00 0.00 0.00 4.40
3049 9096 6.023603 TCCCTCTGGTATCTTTTTACTCTGT 58.976 40.000 0.00 0.00 0.00 3.41
3228 9291 5.816919 TGGTGAAACTTCGATCAAAACTTC 58.183 37.500 0.00 0.00 36.74 3.01
3274 9337 9.793259 TCTGATAAAGGGCGATTTTATTATCTT 57.207 29.630 0.00 0.00 32.42 2.40
3339 9402 3.495100 CCGGCCTCTGCATAACTAAGAAT 60.495 47.826 0.00 0.00 40.13 2.40
3347 9410 6.701340 TCTGCATAACTAAGAATCACACAGT 58.299 36.000 0.00 0.00 0.00 3.55
3353 9416 9.979270 CATAACTAAGAATCACACAGTCAAATC 57.021 33.333 0.00 0.00 0.00 2.17
3354 9417 9.950496 ATAACTAAGAATCACACAGTCAAATCT 57.050 29.630 0.00 0.00 0.00 2.40
3355 9418 7.664082 ACTAAGAATCACACAGTCAAATCTG 57.336 36.000 0.00 0.00 40.80 2.90
3409 9472 4.730657 CGACAAATCGGTAACAGTAGAGT 58.269 43.478 0.00 0.00 44.99 3.24
3410 9473 4.792189 CGACAAATCGGTAACAGTAGAGTC 59.208 45.833 0.00 0.00 44.99 3.36
3411 9474 5.069501 ACAAATCGGTAACAGTAGAGTCC 57.930 43.478 0.00 0.00 0.00 3.85
3412 9475 4.771054 ACAAATCGGTAACAGTAGAGTCCT 59.229 41.667 0.00 0.00 0.00 3.85
3413 9476 5.948162 ACAAATCGGTAACAGTAGAGTCCTA 59.052 40.000 0.00 0.00 0.00 2.94
3414 9477 6.095160 ACAAATCGGTAACAGTAGAGTCCTAG 59.905 42.308 0.00 0.00 0.00 3.02
3415 9478 4.148128 TCGGTAACAGTAGAGTCCTAGG 57.852 50.000 0.82 0.82 0.00 3.02
3416 9479 3.118112 TCGGTAACAGTAGAGTCCTAGGG 60.118 52.174 9.46 0.00 0.00 3.53
3417 9480 3.564264 GGTAACAGTAGAGTCCTAGGGG 58.436 54.545 9.46 0.00 0.00 4.79
3418 9481 2.162264 AACAGTAGAGTCCTAGGGGC 57.838 55.000 9.46 2.33 0.00 5.80
3419 9482 1.310877 ACAGTAGAGTCCTAGGGGCT 58.689 55.000 9.46 7.74 0.00 5.19
3420 9483 1.063567 ACAGTAGAGTCCTAGGGGCTG 60.064 57.143 9.46 10.48 0.00 4.85
3421 9484 1.063567 CAGTAGAGTCCTAGGGGCTGT 60.064 57.143 9.46 8.86 0.00 4.40
3422 9485 1.646977 AGTAGAGTCCTAGGGGCTGTT 59.353 52.381 9.46 1.77 0.00 3.16
3423 9486 2.044630 AGTAGAGTCCTAGGGGCTGTTT 59.955 50.000 9.46 0.00 0.00 2.83
3424 9487 1.280457 AGAGTCCTAGGGGCTGTTTG 58.720 55.000 9.46 0.00 0.00 2.93
3425 9488 0.253327 GAGTCCTAGGGGCTGTTTGG 59.747 60.000 9.46 0.00 0.00 3.28
3426 9489 0.178873 AGTCCTAGGGGCTGTTTGGA 60.179 55.000 9.46 0.00 0.00 3.53
3427 9490 0.919710 GTCCTAGGGGCTGTTTGGAT 59.080 55.000 9.46 0.00 0.00 3.41
3428 9491 1.134068 GTCCTAGGGGCTGTTTGGATC 60.134 57.143 9.46 0.00 0.00 3.36
3429 9492 0.918983 CCTAGGGGCTGTTTGGATCA 59.081 55.000 0.00 0.00 0.00 2.92
3430 9493 1.408822 CCTAGGGGCTGTTTGGATCAC 60.409 57.143 0.00 0.00 0.00 3.06
3431 9494 1.561542 CTAGGGGCTGTTTGGATCACT 59.438 52.381 0.00 0.00 0.00 3.41
3432 9495 1.668826 AGGGGCTGTTTGGATCACTA 58.331 50.000 0.00 0.00 0.00 2.74
3433 9496 1.282157 AGGGGCTGTTTGGATCACTAC 59.718 52.381 0.00 0.00 0.00 2.73
3434 9497 1.682087 GGGGCTGTTTGGATCACTACC 60.682 57.143 0.00 0.00 0.00 3.18
3435 9498 1.004277 GGGCTGTTTGGATCACTACCA 59.996 52.381 0.00 0.00 35.47 3.25
3436 9499 2.554344 GGGCTGTTTGGATCACTACCAA 60.554 50.000 0.00 0.00 44.27 3.67
3437 9500 2.488153 GGCTGTTTGGATCACTACCAAC 59.512 50.000 0.00 0.00 45.38 3.77
3438 9501 3.146066 GCTGTTTGGATCACTACCAACA 58.854 45.455 0.00 0.00 45.38 3.33
3439 9502 3.058224 GCTGTTTGGATCACTACCAACAC 60.058 47.826 0.00 0.00 45.38 3.32
3440 9503 4.389374 CTGTTTGGATCACTACCAACACT 58.611 43.478 0.00 0.00 45.38 3.55
3441 9504 5.547465 CTGTTTGGATCACTACCAACACTA 58.453 41.667 0.00 0.00 45.38 2.74
3442 9505 5.547465 TGTTTGGATCACTACCAACACTAG 58.453 41.667 0.00 0.00 45.38 2.57
3443 9506 3.887621 TGGATCACTACCAACACTAGC 57.112 47.619 0.00 0.00 34.25 3.42
3444 9507 2.500098 TGGATCACTACCAACACTAGCC 59.500 50.000 0.00 0.00 34.25 3.93
3445 9508 2.158943 GGATCACTACCAACACTAGCCC 60.159 54.545 0.00 0.00 0.00 5.19
3446 9509 2.320681 TCACTACCAACACTAGCCCT 57.679 50.000 0.00 0.00 0.00 5.19
3447 9510 1.899814 TCACTACCAACACTAGCCCTG 59.100 52.381 0.00 0.00 0.00 4.45
3448 9511 0.613777 ACTACCAACACTAGCCCTGC 59.386 55.000 0.00 0.00 0.00 4.85
3449 9512 0.107654 CTACCAACACTAGCCCTGCC 60.108 60.000 0.00 0.00 0.00 4.85
3450 9513 0.838554 TACCAACACTAGCCCTGCCA 60.839 55.000 0.00 0.00 0.00 4.92
3451 9514 1.074775 CCAACACTAGCCCTGCCAA 59.925 57.895 0.00 0.00 0.00 4.52
3452 9515 0.539438 CCAACACTAGCCCTGCCAAA 60.539 55.000 0.00 0.00 0.00 3.28
3453 9516 1.327303 CAACACTAGCCCTGCCAAAA 58.673 50.000 0.00 0.00 0.00 2.44
3454 9517 1.686052 CAACACTAGCCCTGCCAAAAA 59.314 47.619 0.00 0.00 0.00 1.94
3455 9518 1.620822 ACACTAGCCCTGCCAAAAAG 58.379 50.000 0.00 0.00 0.00 2.27
3456 9519 1.133482 ACACTAGCCCTGCCAAAAAGT 60.133 47.619 0.00 0.00 0.00 2.66
3457 9520 1.963515 CACTAGCCCTGCCAAAAAGTT 59.036 47.619 0.00 0.00 0.00 2.66
3458 9521 1.963515 ACTAGCCCTGCCAAAAAGTTG 59.036 47.619 0.00 0.00 34.25 3.16
3466 9529 4.653555 CAAAAAGTTGGCTCGCCC 57.346 55.556 5.33 0.00 34.56 6.13
3467 9530 1.739049 CAAAAAGTTGGCTCGCCCA 59.261 52.632 5.33 0.00 43.51 5.36
3468 9531 0.597377 CAAAAAGTTGGCTCGCCCAC 60.597 55.000 5.33 4.67 45.34 4.61
3469 9532 2.070654 AAAAAGTTGGCTCGCCCACG 62.071 55.000 5.33 0.00 45.34 4.94
3470 9533 3.767630 AAAGTTGGCTCGCCCACGT 62.768 57.895 5.33 0.00 45.34 4.49
3471 9534 2.386064 AAAGTTGGCTCGCCCACGTA 62.386 55.000 5.33 0.00 45.34 3.57
3472 9535 2.125269 GTTGGCTCGCCCACGTAT 60.125 61.111 5.33 0.00 45.34 3.06
3473 9536 1.743995 GTTGGCTCGCCCACGTATT 60.744 57.895 5.33 0.00 45.34 1.89
3474 9537 1.003112 TTGGCTCGCCCACGTATTT 60.003 52.632 5.33 0.00 45.34 1.40
3475 9538 0.606944 TTGGCTCGCCCACGTATTTT 60.607 50.000 5.33 0.00 45.34 1.82
3476 9539 1.302383 TGGCTCGCCCACGTATTTTG 61.302 55.000 5.33 0.00 39.18 2.44
3477 9540 1.427819 GCTCGCCCACGTATTTTGG 59.572 57.895 0.00 0.00 41.18 3.28
3478 9541 1.303091 GCTCGCCCACGTATTTTGGT 61.303 55.000 0.00 0.00 41.18 3.67
3479 9542 0.446222 CTCGCCCACGTATTTTGGTG 59.554 55.000 0.00 0.00 41.18 4.17
3483 9546 1.504446 CCACGTATTTTGGTGGCCG 59.496 57.895 0.00 0.00 46.34 6.13
3484 9547 1.238625 CCACGTATTTTGGTGGCCGT 61.239 55.000 0.00 0.00 46.34 5.68
3485 9548 0.594110 CACGTATTTTGGTGGCCGTT 59.406 50.000 0.00 0.00 0.00 4.44
3486 9549 1.001158 CACGTATTTTGGTGGCCGTTT 60.001 47.619 0.00 0.00 0.00 3.60
3487 9550 1.001158 ACGTATTTTGGTGGCCGTTTG 60.001 47.619 0.00 0.00 0.00 2.93
3488 9551 1.667467 CGTATTTTGGTGGCCGTTTGG 60.667 52.381 0.00 0.00 38.77 3.28
3489 9552 1.614413 GTATTTTGGTGGCCGTTTGGA 59.386 47.619 0.00 0.00 37.49 3.53
3491 9554 1.677637 TTTTGGTGGCCGTTTGGACC 61.678 55.000 0.00 0.00 46.01 4.46
3492 9555 4.939368 TGGTGGCCGTTTGGACCG 62.939 66.667 0.00 0.00 46.01 4.79
3501 9564 4.257654 TTTGGACCGGCGCCTGAA 62.258 61.111 25.71 5.57 0.00 3.02
3502 9565 3.776347 TTTGGACCGGCGCCTGAAA 62.776 57.895 25.71 11.74 0.00 2.69
3503 9566 3.776347 TTGGACCGGCGCCTGAAAA 62.776 57.895 25.71 12.06 0.00 2.29
3504 9567 2.750237 GGACCGGCGCCTGAAAAT 60.750 61.111 25.71 0.83 0.00 1.82
3505 9568 2.340328 GGACCGGCGCCTGAAAATT 61.340 57.895 25.71 0.39 0.00 1.82
3506 9569 1.154035 GACCGGCGCCTGAAAATTG 60.154 57.895 25.71 5.73 0.00 2.32
3507 9570 2.181525 CCGGCGCCTGAAAATTGG 59.818 61.111 26.68 11.93 0.00 3.16
3508 9571 2.506881 CGGCGCCTGAAAATTGGC 60.507 61.111 26.68 0.00 45.25 4.52
3509 9572 2.973082 GGCGCCTGAAAATTGGCT 59.027 55.556 22.15 0.00 46.42 4.75
3510 9573 1.153765 GGCGCCTGAAAATTGGCTC 60.154 57.895 22.15 0.00 46.42 4.70
3511 9574 1.514873 GCGCCTGAAAATTGGCTCG 60.515 57.895 0.00 0.00 46.42 5.03
3512 9575 1.514873 CGCCTGAAAATTGGCTCGC 60.515 57.895 3.32 0.00 46.42 5.03
3513 9576 1.153765 GCCTGAAAATTGGCTCGCC 60.154 57.895 0.00 0.00 45.26 5.54
3514 9577 1.512694 CCTGAAAATTGGCTCGCCC 59.487 57.895 5.33 0.00 34.56 6.13
3515 9578 1.137404 CTGAAAATTGGCTCGCCCG 59.863 57.895 5.33 0.00 35.87 6.13
3516 9579 2.270297 CTGAAAATTGGCTCGCCCGG 62.270 60.000 5.33 0.00 35.87 5.73
3517 9580 3.699955 GAAAATTGGCTCGCCCGGC 62.700 63.158 5.33 0.00 35.87 6.13
3539 9602 4.431131 CCTGCGCCCCTCCATGTT 62.431 66.667 4.18 0.00 0.00 2.71
3540 9603 2.589540 CTGCGCCCCTCCATGTTA 59.410 61.111 4.18 0.00 0.00 2.41
3541 9604 1.077787 CTGCGCCCCTCCATGTTAA 60.078 57.895 4.18 0.00 0.00 2.01
3542 9605 0.466189 CTGCGCCCCTCCATGTTAAT 60.466 55.000 4.18 0.00 0.00 1.40
3543 9606 0.465460 TGCGCCCCTCCATGTTAATC 60.465 55.000 4.18 0.00 0.00 1.75
3544 9607 0.179018 GCGCCCCTCCATGTTAATCT 60.179 55.000 0.00 0.00 0.00 2.40
3545 9608 1.884235 CGCCCCTCCATGTTAATCTC 58.116 55.000 0.00 0.00 0.00 2.75
3546 9609 1.873903 CGCCCCTCCATGTTAATCTCG 60.874 57.143 0.00 0.00 0.00 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.250200 ACTTTACATGAGTAAAATCGCCCA 58.750 37.500 0.00 0.00 46.40 5.36
1 2 5.813080 ACTTTACATGAGTAAAATCGCCC 57.187 39.130 0.00 0.00 46.40 6.13
2 3 6.608610 ACAACTTTACATGAGTAAAATCGCC 58.391 36.000 0.00 0.00 46.40 5.54
6 7 9.389570 GCGTTTACAACTTTACATGAGTAAAAT 57.610 29.630 0.00 0.00 46.40 1.82
7 8 7.856894 GGCGTTTACAACTTTACATGAGTAAAA 59.143 33.333 0.00 0.00 46.40 1.52
8 9 7.354257 GGCGTTTACAACTTTACATGAGTAAA 58.646 34.615 0.00 0.00 45.36 2.01
9 10 6.346758 CGGCGTTTACAACTTTACATGAGTAA 60.347 38.462 0.00 0.00 38.40 2.24
10 11 5.118971 CGGCGTTTACAACTTTACATGAGTA 59.881 40.000 0.00 0.00 0.00 2.59
11 12 4.084223 CGGCGTTTACAACTTTACATGAGT 60.084 41.667 0.00 0.00 0.00 3.41
12 13 4.150980 TCGGCGTTTACAACTTTACATGAG 59.849 41.667 6.85 0.00 0.00 2.90
13 14 4.056740 TCGGCGTTTACAACTTTACATGA 58.943 39.130 6.85 0.00 0.00 3.07
14 15 4.084223 ACTCGGCGTTTACAACTTTACATG 60.084 41.667 6.85 0.00 0.00 3.21
15 16 4.060205 ACTCGGCGTTTACAACTTTACAT 58.940 39.130 6.85 0.00 0.00 2.29
16 17 3.456280 ACTCGGCGTTTACAACTTTACA 58.544 40.909 6.85 0.00 0.00 2.41
17 18 3.737774 AGACTCGGCGTTTACAACTTTAC 59.262 43.478 6.85 0.00 0.00 2.01
18 19 3.737266 CAGACTCGGCGTTTACAACTTTA 59.263 43.478 6.85 0.00 0.00 1.85
19 20 2.542595 CAGACTCGGCGTTTACAACTTT 59.457 45.455 6.85 0.00 0.00 2.66
20 21 2.132762 CAGACTCGGCGTTTACAACTT 58.867 47.619 6.85 0.00 0.00 2.66
21 22 1.779569 CAGACTCGGCGTTTACAACT 58.220 50.000 6.85 0.00 0.00 3.16
22 23 0.163146 GCAGACTCGGCGTTTACAAC 59.837 55.000 6.85 0.00 0.00 3.32
23 24 0.249531 TGCAGACTCGGCGTTTACAA 60.250 50.000 6.85 0.00 0.00 2.41
24 25 0.249531 TTGCAGACTCGGCGTTTACA 60.250 50.000 6.85 0.00 0.00 2.41
25 26 1.060698 GATTGCAGACTCGGCGTTTAC 59.939 52.381 6.85 0.00 0.00 2.01
26 27 1.337354 TGATTGCAGACTCGGCGTTTA 60.337 47.619 6.85 0.00 0.00 2.01
27 28 0.602638 TGATTGCAGACTCGGCGTTT 60.603 50.000 6.85 0.00 0.00 3.60
28 29 1.005037 TGATTGCAGACTCGGCGTT 60.005 52.632 6.85 0.00 0.00 4.84
29 30 1.446792 CTGATTGCAGACTCGGCGT 60.447 57.895 6.85 0.00 45.17 5.68
30 31 1.153765 TCTGATTGCAGACTCGGCG 60.154 57.895 0.00 0.00 45.88 6.46
31 32 4.919653 TCTGATTGCAGACTCGGC 57.080 55.556 0.00 0.00 45.88 5.54
62 63 9.371136 CTTTTAAGCAGGTCTTTCTTTCTTTTT 57.629 29.630 0.00 0.00 36.25 1.94
63 64 8.531982 ACTTTTAAGCAGGTCTTTCTTTCTTTT 58.468 29.630 0.00 0.00 36.25 2.27
64 65 8.067751 ACTTTTAAGCAGGTCTTTCTTTCTTT 57.932 30.769 0.00 0.00 36.25 2.52
65 66 7.339466 TGACTTTTAAGCAGGTCTTTCTTTCTT 59.661 33.333 0.00 0.00 36.25 2.52
66 67 6.828785 TGACTTTTAAGCAGGTCTTTCTTTCT 59.171 34.615 0.00 0.00 36.25 2.52
67 68 7.027778 TGACTTTTAAGCAGGTCTTTCTTTC 57.972 36.000 0.00 0.00 36.25 2.62
68 69 7.588497 ATGACTTTTAAGCAGGTCTTTCTTT 57.412 32.000 0.00 0.00 36.25 2.52
69 70 7.588497 AATGACTTTTAAGCAGGTCTTTCTT 57.412 32.000 0.00 0.00 36.25 2.52
70 71 7.068716 ACAAATGACTTTTAAGCAGGTCTTTCT 59.931 33.333 0.00 0.00 36.25 2.52
71 72 7.203218 ACAAATGACTTTTAAGCAGGTCTTTC 58.797 34.615 0.00 0.00 36.25 2.62
72 73 7.112452 ACAAATGACTTTTAAGCAGGTCTTT 57.888 32.000 0.00 0.00 36.25 2.52
73 74 6.715347 ACAAATGACTTTTAAGCAGGTCTT 57.285 33.333 0.00 0.00 38.79 3.01
74 75 7.502561 AGTTACAAATGACTTTTAAGCAGGTCT 59.497 33.333 0.00 0.00 0.00 3.85
75 76 7.649057 AGTTACAAATGACTTTTAAGCAGGTC 58.351 34.615 0.00 0.00 0.00 3.85
76 77 7.255486 GGAGTTACAAATGACTTTTAAGCAGGT 60.255 37.037 0.00 0.00 0.00 4.00
77 78 7.084486 GGAGTTACAAATGACTTTTAAGCAGG 58.916 38.462 0.00 0.00 0.00 4.85
78 79 7.648142 TGGAGTTACAAATGACTTTTAAGCAG 58.352 34.615 0.00 0.00 0.00 4.24
79 80 7.575414 TGGAGTTACAAATGACTTTTAAGCA 57.425 32.000 0.00 0.00 0.00 3.91
80 81 9.476202 AATTGGAGTTACAAATGACTTTTAAGC 57.524 29.630 0.00 0.00 33.48 3.09
84 85 9.665719 AACAAATTGGAGTTACAAATGACTTTT 57.334 25.926 0.00 0.00 33.48 2.27
85 86 9.313118 GAACAAATTGGAGTTACAAATGACTTT 57.687 29.630 0.00 0.00 33.48 2.66
86 87 8.695456 AGAACAAATTGGAGTTACAAATGACTT 58.305 29.630 0.00 0.00 33.48 3.01
87 88 8.237811 AGAACAAATTGGAGTTACAAATGACT 57.762 30.769 0.00 0.00 33.48 3.41
88 89 7.595130 GGAGAACAAATTGGAGTTACAAATGAC 59.405 37.037 0.00 0.00 33.48 3.06
89 90 7.255801 GGGAGAACAAATTGGAGTTACAAATGA 60.256 37.037 0.00 0.00 33.48 2.57
90 91 6.868339 GGGAGAACAAATTGGAGTTACAAATG 59.132 38.462 0.00 0.00 33.48 2.32
91 92 6.553100 TGGGAGAACAAATTGGAGTTACAAAT 59.447 34.615 0.00 0.00 33.48 2.32
92 93 5.894393 TGGGAGAACAAATTGGAGTTACAAA 59.106 36.000 0.00 0.00 33.48 2.83
93 94 5.450453 TGGGAGAACAAATTGGAGTTACAA 58.550 37.500 0.00 0.00 34.41 2.41
94 95 5.055265 TGGGAGAACAAATTGGAGTTACA 57.945 39.130 0.00 0.00 0.00 2.41
95 96 6.590234 AATGGGAGAACAAATTGGAGTTAC 57.410 37.500 0.00 0.00 0.00 2.50
96 97 7.523052 CGAAAATGGGAGAACAAATTGGAGTTA 60.523 37.037 0.00 0.00 0.00 2.24
97 98 6.499106 AAAATGGGAGAACAAATTGGAGTT 57.501 33.333 0.00 0.00 0.00 3.01
98 99 5.278957 CGAAAATGGGAGAACAAATTGGAGT 60.279 40.000 0.00 0.00 0.00 3.85
99 100 5.163513 CGAAAATGGGAGAACAAATTGGAG 58.836 41.667 0.00 0.00 0.00 3.86
100 101 4.560513 GCGAAAATGGGAGAACAAATTGGA 60.561 41.667 0.00 0.00 0.00 3.53
101 102 3.679502 GCGAAAATGGGAGAACAAATTGG 59.320 43.478 0.00 0.00 0.00 3.16
102 103 4.150451 GTGCGAAAATGGGAGAACAAATTG 59.850 41.667 0.00 0.00 0.00 2.32
103 104 4.202202 TGTGCGAAAATGGGAGAACAAATT 60.202 37.500 0.00 0.00 0.00 1.82
104 105 3.320541 TGTGCGAAAATGGGAGAACAAAT 59.679 39.130 0.00 0.00 0.00 2.32
105 106 2.690497 TGTGCGAAAATGGGAGAACAAA 59.310 40.909 0.00 0.00 0.00 2.83
106 107 2.302260 TGTGCGAAAATGGGAGAACAA 58.698 42.857 0.00 0.00 0.00 2.83
107 108 1.974265 TGTGCGAAAATGGGAGAACA 58.026 45.000 0.00 0.00 0.00 3.18
108 109 2.607038 GGTTGTGCGAAAATGGGAGAAC 60.607 50.000 0.00 0.00 0.00 3.01
109 110 1.611491 GGTTGTGCGAAAATGGGAGAA 59.389 47.619 0.00 0.00 0.00 2.87
110 111 1.243902 GGTTGTGCGAAAATGGGAGA 58.756 50.000 0.00 0.00 0.00 3.71
111 112 0.958091 TGGTTGTGCGAAAATGGGAG 59.042 50.000 0.00 0.00 0.00 4.30
112 113 0.671251 GTGGTTGTGCGAAAATGGGA 59.329 50.000 0.00 0.00 0.00 4.37
113 114 0.319469 GGTGGTTGTGCGAAAATGGG 60.319 55.000 0.00 0.00 0.00 4.00
114 115 0.673437 AGGTGGTTGTGCGAAAATGG 59.327 50.000 0.00 0.00 0.00 3.16
115 116 1.769733 CAGGTGGTTGTGCGAAAATG 58.230 50.000 0.00 0.00 0.00 2.32
116 117 0.031994 GCAGGTGGTTGTGCGAAAAT 59.968 50.000 0.00 0.00 0.00 1.82
117 118 1.435515 GCAGGTGGTTGTGCGAAAA 59.564 52.632 0.00 0.00 0.00 2.29
118 119 2.485795 GGCAGGTGGTTGTGCGAAA 61.486 57.895 0.00 0.00 40.82 3.46
119 120 2.904866 GGCAGGTGGTTGTGCGAA 60.905 61.111 0.00 0.00 40.82 4.70
120 121 4.947147 GGGCAGGTGGTTGTGCGA 62.947 66.667 0.00 0.00 40.82 5.10
122 123 4.912395 TGGGGCAGGTGGTTGTGC 62.912 66.667 0.00 0.00 39.08 4.57
123 124 2.912025 GTGGGGCAGGTGGTTGTG 60.912 66.667 0.00 0.00 0.00 3.33
124 125 2.713531 GATGTGGGGCAGGTGGTTGT 62.714 60.000 0.00 0.00 0.00 3.32
125 126 1.978617 GATGTGGGGCAGGTGGTTG 60.979 63.158 0.00 0.00 0.00 3.77
126 127 1.729267 AAGATGTGGGGCAGGTGGTT 61.729 55.000 0.00 0.00 0.00 3.67
165 166 5.915196 GCCTTCACTGTTTAGTCATTTTGTC 59.085 40.000 0.00 0.00 34.07 3.18
177 178 1.692519 ACTACTCCGCCTTCACTGTTT 59.307 47.619 0.00 0.00 0.00 2.83
183 184 1.203994 GCACTAACTACTCCGCCTTCA 59.796 52.381 0.00 0.00 0.00 3.02
185 186 1.558233 AGCACTAACTACTCCGCCTT 58.442 50.000 0.00 0.00 0.00 4.35
188 189 1.747355 TGGTAGCACTAACTACTCCGC 59.253 52.381 0.00 0.00 41.88 5.54
194 195 5.224888 CAGTTCGTTTGGTAGCACTAACTA 58.775 41.667 0.00 0.00 30.13 2.24
219 220 2.887568 CTGATGCGGGTCTCGTGC 60.888 66.667 0.00 0.00 41.72 5.34
220 221 1.517257 GACTGATGCGGGTCTCGTG 60.517 63.158 0.00 0.00 41.72 4.35
223 224 0.179097 GGAAGACTGATGCGGGTCTC 60.179 60.000 0.00 0.00 41.28 3.36
230 231 3.949754 TCATGGAAATGGAAGACTGATGC 59.050 43.478 0.00 0.00 0.00 3.91
238 239 9.143631 GTTTGTAAGAAATCATGGAAATGGAAG 57.856 33.333 0.00 0.00 0.00 3.46
255 256 0.320073 CGACCGGGCTGTTTGTAAGA 60.320 55.000 5.33 0.00 0.00 2.10
256 257 0.320073 TCGACCGGGCTGTTTGTAAG 60.320 55.000 5.33 0.00 0.00 2.34
273 274 0.094730 GGAAAGCGATTGAACGGTCG 59.905 55.000 0.00 0.00 43.02 4.79
283 284 2.813908 GACGGCGTGGAAAGCGAT 60.814 61.111 21.19 0.00 44.39 4.58
300 301 1.024579 AAATCGCGGGCTGGTAGTTG 61.025 55.000 6.13 0.00 0.00 3.16
332 333 0.242286 GACTCTGCTCTCGACTTGCA 59.758 55.000 2.89 2.89 35.30 4.08
358 359 3.399330 TGAGATCGTGGAAGAAACCAAC 58.601 45.455 0.00 0.00 41.87 3.77
360 361 2.897326 TCTGAGATCGTGGAAGAAACCA 59.103 45.455 0.00 0.00 37.63 3.67
361 362 3.254892 GTCTGAGATCGTGGAAGAAACC 58.745 50.000 0.00 0.00 0.00 3.27
365 366 1.095600 CGGTCTGAGATCGTGGAAGA 58.904 55.000 7.01 0.00 30.88 2.87
391 392 0.682855 AGAGGCAGAGAGGTCGAAGG 60.683 60.000 0.00 0.00 0.00 3.46
419 420 2.391724 TTTGGAGACCCACGAGCCAC 62.392 60.000 0.00 0.00 43.41 5.01
421 422 1.072505 TTTTGGAGACCCACGAGCC 59.927 57.895 0.00 0.00 43.41 4.70
422 423 1.235281 GGTTTTGGAGACCCACGAGC 61.235 60.000 0.00 0.00 43.41 5.03
423 424 0.107831 TGGTTTTGGAGACCCACGAG 59.892 55.000 0.00 0.00 43.41 4.18
424 425 0.768622 ATGGTTTTGGAGACCCACGA 59.231 50.000 0.00 0.00 43.41 4.35
425 426 0.881118 CATGGTTTTGGAGACCCACG 59.119 55.000 0.00 0.00 43.41 4.94
426 427 1.203001 TCCATGGTTTTGGAGACCCAC 60.203 52.381 12.58 0.00 43.41 4.61
427 428 1.153539 TCCATGGTTTTGGAGACCCA 58.846 50.000 12.58 0.00 40.90 4.51
428 429 2.302587 TTCCATGGTTTTGGAGACCC 57.697 50.000 12.58 0.00 46.22 4.46
445 446 8.455903 TGGAATGAATCTACTGGAATGAATTC 57.544 34.615 0.00 0.00 36.08 2.17
451 452 6.933521 CGATTCTGGAATGAATCTACTGGAAT 59.066 38.462 13.17 0.00 45.95 3.01
452 453 6.098266 TCGATTCTGGAATGAATCTACTGGAA 59.902 38.462 13.17 0.00 45.95 3.53
453 454 5.598417 TCGATTCTGGAATGAATCTACTGGA 59.402 40.000 13.17 3.04 45.95 3.86
454 455 5.847304 TCGATTCTGGAATGAATCTACTGG 58.153 41.667 13.17 1.17 45.95 4.00
455 456 6.743110 TCTCGATTCTGGAATGAATCTACTG 58.257 40.000 13.17 1.45 45.95 2.74
457 458 7.151308 ACATCTCGATTCTGGAATGAATCTAC 58.849 38.462 13.17 0.00 45.95 2.59
458 459 7.295322 ACATCTCGATTCTGGAATGAATCTA 57.705 36.000 13.17 4.24 45.95 1.98
541 548 3.306364 GCTAAGACTCTGCTCAGGTCAAA 60.306 47.826 15.65 6.82 33.75 2.69
549 556 0.108615 TTGCCGCTAAGACTCTGCTC 60.109 55.000 0.00 0.00 0.00 4.26
550 557 0.321671 TTTGCCGCTAAGACTCTGCT 59.678 50.000 0.00 0.00 0.00 4.24
588 595 8.404000 CAATTGTTTTTGGGATTTTCATGTTCA 58.596 29.630 0.00 0.00 0.00 3.18
601 608 4.259610 CGAACACGTTCAATTGTTTTTGGG 60.260 41.667 5.13 0.00 39.46 4.12
603 610 5.428793 ACGAACACGTTCAATTGTTTTTG 57.571 34.783 5.13 2.25 39.46 2.44
648 657 8.804688 ATGTTTCAAGACGATAGATAGTAAGC 57.195 34.615 0.00 0.00 41.38 3.09
727 780 3.508952 TTTCTCCCCTCTGTCCCTTAT 57.491 47.619 0.00 0.00 0.00 1.73
729 782 1.988846 CTTTTCTCCCCTCTGTCCCTT 59.011 52.381 0.00 0.00 0.00 3.95
739 792 6.159222 TCCTAATTACTTACCCTTTTCTCCCC 59.841 42.308 0.00 0.00 0.00 4.81
743 797 8.473219 CGTAGTCCTAATTACTTACCCTTTTCT 58.527 37.037 0.00 0.00 0.00 2.52
744 798 8.253810 ACGTAGTCCTAATTACTTACCCTTTTC 58.746 37.037 0.00 0.00 29.74 2.29
752 806 5.450965 GCCAGCACGTAGTCCTAATTACTTA 60.451 44.000 0.00 0.00 41.61 2.24
880 968 0.926293 AGAGAGAGAGAGTGGAGGGG 59.074 60.000 0.00 0.00 0.00 4.79
907 1007 3.399181 GGGATGGCGTGGAGGTCA 61.399 66.667 0.00 0.00 0.00 4.02
917 1017 1.228988 GATGGGAATGGGGGATGGC 60.229 63.158 0.00 0.00 0.00 4.40
947 1047 4.322273 GCTGGATTTTCTTTCTTCCTTGGG 60.322 45.833 0.00 0.00 0.00 4.12
964 1064 2.244486 TGGTCTCTTCTCTGCTGGAT 57.756 50.000 0.00 0.00 0.00 3.41
965 1065 1.898472 CTTGGTCTCTTCTCTGCTGGA 59.102 52.381 0.00 0.00 0.00 3.86
966 1066 1.066286 CCTTGGTCTCTTCTCTGCTGG 60.066 57.143 0.00 0.00 0.00 4.85
967 1067 1.622811 ACCTTGGTCTCTTCTCTGCTG 59.377 52.381 0.00 0.00 0.00 4.41
969 1069 1.338579 CCACCTTGGTCTCTTCTCTGC 60.339 57.143 0.00 0.00 31.35 4.26
985 1101 1.436336 CCATCGTCGTCTACCCACC 59.564 63.158 0.00 0.00 0.00 4.61
986 1102 1.226888 GCCATCGTCGTCTACCCAC 60.227 63.158 0.00 0.00 0.00 4.61
987 1103 2.767445 CGCCATCGTCGTCTACCCA 61.767 63.158 0.00 0.00 0.00 4.51
988 1104 2.025727 CGCCATCGTCGTCTACCC 59.974 66.667 0.00 0.00 0.00 3.69
1022 1138 4.396854 CGTAGCCGTACTCCTTGC 57.603 61.111 0.00 0.00 0.00 4.01
1138 1256 0.805322 ATCAAGAAGCAGAGCGAGCG 60.805 55.000 0.00 0.00 37.01 5.03
1139 1257 1.367659 AATCAAGAAGCAGAGCGAGC 58.632 50.000 0.00 0.00 0.00 5.03
1140 1258 2.998670 TCAAATCAAGAAGCAGAGCGAG 59.001 45.455 0.00 0.00 0.00 5.03
1141 1259 3.044235 TCAAATCAAGAAGCAGAGCGA 57.956 42.857 0.00 0.00 0.00 4.93
1171 1313 0.305922 CGCCGAAGCTCCATCAAATC 59.694 55.000 0.00 0.00 36.60 2.17
1194 1336 1.081641 CTGAAACAAGCAGCGGCAG 60.082 57.895 12.44 5.64 44.61 4.85
1195 1337 2.554636 CCTGAAACAAGCAGCGGCA 61.555 57.895 12.44 0.00 44.61 5.69
1244 1397 0.879765 TCCTTGTTCTCCGACTCGAC 59.120 55.000 0.00 0.00 0.00 4.20
1381 6439 2.354074 CTGCAACCCCACAGCACAAC 62.354 60.000 0.00 0.00 34.13 3.32
1598 6684 4.201657 TGAATCAACTGCATATGGACCAG 58.798 43.478 4.56 6.09 0.00 4.00
1599 6685 4.080413 TCTGAATCAACTGCATATGGACCA 60.080 41.667 4.56 0.00 0.00 4.02
1600 6686 4.454678 TCTGAATCAACTGCATATGGACC 58.545 43.478 4.56 0.00 0.00 4.46
1601 6687 6.630444 ATTCTGAATCAACTGCATATGGAC 57.370 37.500 4.56 0.00 0.00 4.02
1602 6688 7.339976 TGAAATTCTGAATCAACTGCATATGGA 59.660 33.333 4.56 0.00 0.00 3.41
1603 6689 7.485810 TGAAATTCTGAATCAACTGCATATGG 58.514 34.615 4.56 0.00 0.00 2.74
1604 6690 8.403236 TCTGAAATTCTGAATCAACTGCATATG 58.597 33.333 2.92 0.00 0.00 1.78
1605 6691 8.515695 TCTGAAATTCTGAATCAACTGCATAT 57.484 30.769 2.92 0.00 0.00 1.78
1606 6692 7.926674 TCTGAAATTCTGAATCAACTGCATA 57.073 32.000 2.92 0.00 0.00 3.14
1607 6693 6.829229 TCTGAAATTCTGAATCAACTGCAT 57.171 33.333 2.92 0.00 0.00 3.96
1608 6694 6.431852 TCATCTGAAATTCTGAATCAACTGCA 59.568 34.615 6.66 0.00 0.00 4.41
1609 6695 6.849502 TCATCTGAAATTCTGAATCAACTGC 58.150 36.000 6.66 0.00 0.00 4.40
1610 6696 8.129840 GGATCATCTGAAATTCTGAATCAACTG 58.870 37.037 6.66 0.60 0.00 3.16
1611 6697 8.053963 AGGATCATCTGAAATTCTGAATCAACT 58.946 33.333 6.66 1.52 0.00 3.16
1612 6698 8.129840 CAGGATCATCTGAAATTCTGAATCAAC 58.870 37.037 6.66 0.00 36.93 3.18
1613 6699 8.050930 TCAGGATCATCTGAAATTCTGAATCAA 58.949 33.333 6.66 0.00 40.43 2.57
1614 6700 7.498239 GTCAGGATCATCTGAAATTCTGAATCA 59.502 37.037 13.16 0.00 44.30 2.57
1615 6701 7.498239 TGTCAGGATCATCTGAAATTCTGAATC 59.502 37.037 13.16 6.39 44.30 2.52
1616 6702 7.344134 TGTCAGGATCATCTGAAATTCTGAAT 58.656 34.615 13.16 0.00 44.30 2.57
1617 6703 6.714278 TGTCAGGATCATCTGAAATTCTGAA 58.286 36.000 13.16 0.00 44.30 3.02
1618 6704 6.303903 TGTCAGGATCATCTGAAATTCTGA 57.696 37.500 5.07 5.07 44.30 3.27
1619 6705 6.205076 GGATGTCAGGATCATCTGAAATTCTG 59.795 42.308 6.21 5.68 44.30 3.02
1620 6706 6.126565 TGGATGTCAGGATCATCTGAAATTCT 60.127 38.462 10.27 0.00 44.30 2.40
1621 6707 6.060136 TGGATGTCAGGATCATCTGAAATTC 58.940 40.000 6.21 5.23 44.30 2.17
1622 6708 6.009908 TGGATGTCAGGATCATCTGAAATT 57.990 37.500 6.21 0.00 44.30 1.82
1623 6709 5.641789 TGGATGTCAGGATCATCTGAAAT 57.358 39.130 4.76 4.76 44.30 2.17
1624 6710 5.440207 TTGGATGTCAGGATCATCTGAAA 57.560 39.130 3.55 0.00 44.30 2.69
1635 6721 2.164219 CCGGTTTGATTTGGATGTCAGG 59.836 50.000 0.00 0.00 0.00 3.86
1636 6722 2.819608 ACCGGTTTGATTTGGATGTCAG 59.180 45.455 0.00 0.00 0.00 3.51
1639 6725 2.298729 CCAACCGGTTTGATTTGGATGT 59.701 45.455 19.55 0.00 40.97 3.06
1653 6882 1.178534 ATTGCTTCACACCCAACCGG 61.179 55.000 0.00 0.00 37.81 5.28
1655 6884 2.790433 TCTATTGCTTCACACCCAACC 58.210 47.619 0.00 0.00 0.00 3.77
1656 6885 5.239525 GGATATCTATTGCTTCACACCCAAC 59.760 44.000 2.05 0.00 0.00 3.77
1658 6887 4.411869 TGGATATCTATTGCTTCACACCCA 59.588 41.667 2.05 0.00 0.00 4.51
1662 6891 6.888105 TCAAGTGGATATCTATTGCTTCACA 58.112 36.000 2.05 0.00 0.00 3.58
1676 6908 4.858850 ACATGCTGGAAATCAAGTGGATA 58.141 39.130 0.00 0.00 34.28 2.59
1710 6944 4.494091 TCAGGCTGAGAATTTCCTAAGG 57.506 45.455 14.43 0.00 0.00 2.69
1730 6965 9.635520 CTATCAATGGAATCAAATGGCTAATTC 57.364 33.333 0.00 0.00 0.00 2.17
1732 6967 7.951806 TCCTATCAATGGAATCAAATGGCTAAT 59.048 33.333 0.00 0.00 0.00 1.73
1733 6968 7.296856 TCCTATCAATGGAATCAAATGGCTAA 58.703 34.615 0.00 0.00 0.00 3.09
1734 6969 6.851318 TCCTATCAATGGAATCAAATGGCTA 58.149 36.000 0.00 0.00 0.00 3.93
1747 6998 9.877178 GGTTGACTAATACTATCCTATCAATGG 57.123 37.037 0.00 0.00 0.00 3.16
1916 7543 1.239968 GCAGTGCAGGAGGTTGAAGG 61.240 60.000 11.09 0.00 0.00 3.46
1933 7560 0.689055 AAGGCATCTCTCTGTGTGCA 59.311 50.000 0.00 0.00 39.27 4.57
1935 7562 3.144506 ACAAAAGGCATCTCTCTGTGTG 58.855 45.455 0.00 0.00 0.00 3.82
1936 7563 3.072184 AGACAAAAGGCATCTCTCTGTGT 59.928 43.478 0.00 0.00 0.00 3.72
2001 7628 2.148768 GTGTGGGGTGCTAACTGTTAC 58.851 52.381 0.00 0.00 0.00 2.50
2002 7629 1.072648 GGTGTGGGGTGCTAACTGTTA 59.927 52.381 0.00 0.00 0.00 2.41
2004 7631 1.349542 TGGTGTGGGGTGCTAACTGT 61.350 55.000 0.00 0.00 0.00 3.55
2006 7633 1.060163 AGTGGTGTGGGGTGCTAACT 61.060 55.000 0.00 0.00 0.00 2.24
2007 7634 0.688487 TAGTGGTGTGGGGTGCTAAC 59.312 55.000 0.00 0.00 0.00 2.34
2008 7635 0.688487 GTAGTGGTGTGGGGTGCTAA 59.312 55.000 0.00 0.00 0.00 3.09
2009 7636 0.178915 AGTAGTGGTGTGGGGTGCTA 60.179 55.000 0.00 0.00 0.00 3.49
2010 7637 1.461461 AGTAGTGGTGTGGGGTGCT 60.461 57.895 0.00 0.00 0.00 4.40
2011 7638 1.302511 CAGTAGTGGTGTGGGGTGC 60.303 63.158 0.00 0.00 0.00 5.01
2012 7639 1.374947 CCAGTAGTGGTGTGGGGTG 59.625 63.158 8.59 0.00 39.30 4.61
2013 7640 3.900888 CCAGTAGTGGTGTGGGGT 58.099 61.111 8.59 0.00 39.30 4.95
2030 7657 4.512944 TCAGAAAAGAGATGTGCAGACAAC 59.487 41.667 0.00 0.00 35.11 3.32
2034 7661 5.999600 TCAATTCAGAAAAGAGATGTGCAGA 59.000 36.000 0.00 0.00 0.00 4.26
2045 7678 3.258872 TGGCCCATGTCAATTCAGAAAAG 59.741 43.478 0.00 0.00 0.00 2.27
2133 7805 6.855763 ACATCACATCCAATAACCAATGTT 57.144 33.333 0.00 0.00 38.52 2.71
2194 8022 7.922699 AGGACAGAAGCTTAGGTAGAATTAT 57.077 36.000 0.00 0.00 0.00 1.28
2195 8023 8.861086 CATAGGACAGAAGCTTAGGTAGAATTA 58.139 37.037 0.00 0.00 0.00 1.40
2199 8065 5.767670 ACATAGGACAGAAGCTTAGGTAGA 58.232 41.667 0.00 0.00 0.00 2.59
2229 8099 7.781056 TCCTAGTTATCGTTTATAAAACCGGT 58.219 34.615 0.00 0.00 31.82 5.28
2324 8208 1.282817 CCATCGACGCGTTATTTGGA 58.717 50.000 15.53 4.85 0.00 3.53
2327 8211 1.433837 GGCCCATCGACGCGTTATTT 61.434 55.000 15.53 0.00 0.00 1.40
2343 8231 1.227060 GCCGATGCAATTTCAGGCC 60.227 57.895 0.00 0.00 38.72 5.19
2358 8246 4.332819 AGGAAACGAAATTCTTCTATGCCG 59.667 41.667 0.00 0.00 0.00 5.69
2375 8263 4.869861 ACTTGACATGCACAAAAAGGAAAC 59.130 37.500 0.00 0.00 0.00 2.78
2556 8450 1.153549 GTCAGGCATCAGTCCCGAC 60.154 63.158 0.00 0.00 0.00 4.79
2557 8451 0.904865 AAGTCAGGCATCAGTCCCGA 60.905 55.000 0.00 0.00 0.00 5.14
2558 8452 0.742281 CAAGTCAGGCATCAGTCCCG 60.742 60.000 0.00 0.00 0.00 5.14
2559 8453 0.615331 TCAAGTCAGGCATCAGTCCC 59.385 55.000 0.00 0.00 0.00 4.46
2676 8590 5.163854 CCTCGATGTTACAAATTGTCTCCAC 60.164 44.000 0.22 0.00 0.00 4.02
2685 8599 6.430000 AGCTACAAAACCTCGATGTTACAAAT 59.570 34.615 6.51 0.00 0.00 2.32
2826 8747 0.108662 TCAGACACAGGCGCATACAG 60.109 55.000 10.83 0.00 0.00 2.74
2847 8768 1.262683 GCGTCTCCAGCTTATGATTGC 59.737 52.381 0.00 0.00 0.00 3.56
2882 8803 4.680237 TCCCTTCTGGCACACGCG 62.680 66.667 3.53 3.53 39.92 6.01
2938 8983 3.974401 CGTGACAATTGACAAATCCACAC 59.026 43.478 13.59 6.86 0.00 3.82
2939 8984 3.549827 GCGTGACAATTGACAAATCCACA 60.550 43.478 13.59 0.00 0.00 4.17
2942 8987 2.030363 TGGCGTGACAATTGACAAATCC 60.030 45.455 13.59 13.45 0.00 3.01
3018 9065 1.145325 AGATACCAGAGGGAGTACGGG 59.855 57.143 0.00 0.00 38.05 5.28
3175 9238 8.239038 TGTAGGAAAATTTACCAACATTCACA 57.761 30.769 0.00 0.00 0.00 3.58
3185 9248 8.117813 TCACCAAGATTGTAGGAAAATTTACC 57.882 34.615 0.00 0.00 0.00 2.85
3274 9337 5.588246 TGTATCCGCTTGATGCTTCATTTTA 59.412 36.000 2.75 0.00 37.04 1.52
3339 9402 5.525012 CAGACTTTCAGATTTGACTGTGTGA 59.475 40.000 8.34 0.00 38.79 3.58
3398 9461 2.857498 AGCCCCTAGGACTCTACTGTTA 59.143 50.000 11.48 0.00 33.47 2.41
3402 9465 1.310877 ACAGCCCCTAGGACTCTACT 58.689 55.000 11.48 0.00 33.47 2.57
3407 9470 0.178873 TCCAAACAGCCCCTAGGACT 60.179 55.000 11.48 4.16 33.47 3.85
3408 9471 0.919710 ATCCAAACAGCCCCTAGGAC 59.080 55.000 11.48 1.37 33.47 3.85
3409 9472 1.213296 GATCCAAACAGCCCCTAGGA 58.787 55.000 11.48 0.00 33.47 2.94
3410 9473 0.918983 TGATCCAAACAGCCCCTAGG 59.081 55.000 0.06 0.06 0.00 3.02
3411 9474 1.561542 AGTGATCCAAACAGCCCCTAG 59.438 52.381 0.00 0.00 0.00 3.02
3412 9475 1.668826 AGTGATCCAAACAGCCCCTA 58.331 50.000 0.00 0.00 0.00 3.53
3413 9476 1.282157 GTAGTGATCCAAACAGCCCCT 59.718 52.381 0.00 0.00 0.00 4.79
3414 9477 1.682087 GGTAGTGATCCAAACAGCCCC 60.682 57.143 0.00 0.00 0.00 5.80
3415 9478 1.004277 TGGTAGTGATCCAAACAGCCC 59.996 52.381 0.00 0.00 31.50 5.19
3416 9479 2.488153 GTTGGTAGTGATCCAAACAGCC 59.512 50.000 0.00 0.00 44.91 4.85
3417 9480 3.058224 GTGTTGGTAGTGATCCAAACAGC 60.058 47.826 0.00 0.00 44.91 4.40
3418 9481 4.389374 AGTGTTGGTAGTGATCCAAACAG 58.611 43.478 0.00 0.00 44.91 3.16
3419 9482 4.431416 AGTGTTGGTAGTGATCCAAACA 57.569 40.909 0.00 0.00 44.91 2.83
3420 9483 4.392138 GCTAGTGTTGGTAGTGATCCAAAC 59.608 45.833 0.00 1.79 44.91 2.93
3421 9484 4.564821 GGCTAGTGTTGGTAGTGATCCAAA 60.565 45.833 0.00 0.00 44.91 3.28
3422 9485 3.055385 GGCTAGTGTTGGTAGTGATCCAA 60.055 47.826 0.00 0.00 41.84 3.53
3423 9486 2.500098 GGCTAGTGTTGGTAGTGATCCA 59.500 50.000 0.00 0.00 0.00 3.41
3424 9487 2.158943 GGGCTAGTGTTGGTAGTGATCC 60.159 54.545 0.00 0.00 0.00 3.36
3425 9488 2.766828 AGGGCTAGTGTTGGTAGTGATC 59.233 50.000 0.00 0.00 0.00 2.92
3426 9489 2.501723 CAGGGCTAGTGTTGGTAGTGAT 59.498 50.000 0.00 0.00 0.00 3.06
3427 9490 1.899814 CAGGGCTAGTGTTGGTAGTGA 59.100 52.381 0.00 0.00 0.00 3.41
3428 9491 1.676014 GCAGGGCTAGTGTTGGTAGTG 60.676 57.143 0.00 0.00 0.00 2.74
3429 9492 0.613777 GCAGGGCTAGTGTTGGTAGT 59.386 55.000 0.00 0.00 0.00 2.73
3430 9493 0.107654 GGCAGGGCTAGTGTTGGTAG 60.108 60.000 0.00 0.00 0.00 3.18
3431 9494 0.838554 TGGCAGGGCTAGTGTTGGTA 60.839 55.000 0.00 0.00 0.00 3.25
3432 9495 1.715019 TTGGCAGGGCTAGTGTTGGT 61.715 55.000 0.00 0.00 0.00 3.67
3433 9496 0.539438 TTTGGCAGGGCTAGTGTTGG 60.539 55.000 0.00 0.00 0.00 3.77
3434 9497 1.327303 TTTTGGCAGGGCTAGTGTTG 58.673 50.000 0.00 0.00 0.00 3.33
3435 9498 1.963515 CTTTTTGGCAGGGCTAGTGTT 59.036 47.619 0.00 0.00 0.00 3.32
3436 9499 1.133482 ACTTTTTGGCAGGGCTAGTGT 60.133 47.619 0.00 0.00 0.00 3.55
3437 9500 1.620822 ACTTTTTGGCAGGGCTAGTG 58.379 50.000 0.00 0.00 0.00 2.74
3438 9501 1.963515 CAACTTTTTGGCAGGGCTAGT 59.036 47.619 0.00 0.00 0.00 2.57
3439 9502 1.273327 CCAACTTTTTGGCAGGGCTAG 59.727 52.381 0.00 0.00 46.09 3.42
3440 9503 1.337118 CCAACTTTTTGGCAGGGCTA 58.663 50.000 0.00 0.00 46.09 3.93
3441 9504 2.135890 CCAACTTTTTGGCAGGGCT 58.864 52.632 0.00 0.00 46.09 5.19
3442 9505 4.777384 CCAACTTTTTGGCAGGGC 57.223 55.556 0.00 0.00 46.09 5.19
3449 9512 0.597377 GTGGGCGAGCCAACTTTTTG 60.597 55.000 16.65 0.00 37.08 2.44
3450 9513 1.739667 GTGGGCGAGCCAACTTTTT 59.260 52.632 16.65 0.00 37.08 1.94
3451 9514 2.551912 CGTGGGCGAGCCAACTTTT 61.552 57.895 18.49 0.00 37.88 2.27
3452 9515 2.386064 TACGTGGGCGAGCCAACTTT 62.386 55.000 18.49 8.61 37.88 2.66
3453 9516 2.180159 ATACGTGGGCGAGCCAACTT 62.180 55.000 18.49 12.38 37.88 2.66
3454 9517 2.180159 AATACGTGGGCGAGCCAACT 62.180 55.000 18.49 8.94 37.88 3.16
3455 9518 1.303091 AAATACGTGGGCGAGCCAAC 61.303 55.000 16.65 14.06 42.00 3.77
3456 9519 0.606944 AAAATACGTGGGCGAGCCAA 60.607 50.000 16.65 0.68 42.00 4.52
3457 9520 1.003112 AAAATACGTGGGCGAGCCA 60.003 52.632 16.65 0.00 42.00 4.75
3458 9521 1.427819 CAAAATACGTGGGCGAGCC 59.572 57.895 5.37 5.37 42.00 4.70
3459 9522 1.303091 ACCAAAATACGTGGGCGAGC 61.303 55.000 0.00 0.00 40.75 5.03
3460 9523 0.446222 CACCAAAATACGTGGGCGAG 59.554 55.000 0.00 0.00 40.75 5.03
3461 9524 0.956410 CCACCAAAATACGTGGGCGA 60.956 55.000 0.00 0.00 44.89 5.54
3462 9525 1.504446 CCACCAAAATACGTGGGCG 59.496 57.895 0.00 0.00 44.89 6.13
3466 9529 0.594110 AACGGCCACCAAAATACGTG 59.406 50.000 2.24 0.00 34.54 4.49
3467 9530 1.001158 CAAACGGCCACCAAAATACGT 60.001 47.619 2.24 0.00 35.95 3.57
3468 9531 1.667467 CCAAACGGCCACCAAAATACG 60.667 52.381 2.24 0.00 0.00 3.06
3469 9532 1.614413 TCCAAACGGCCACCAAAATAC 59.386 47.619 2.24 0.00 0.00 1.89
3470 9533 1.614413 GTCCAAACGGCCACCAAAATA 59.386 47.619 2.24 0.00 0.00 1.40
3471 9534 0.391228 GTCCAAACGGCCACCAAAAT 59.609 50.000 2.24 0.00 0.00 1.82
3472 9535 1.677637 GGTCCAAACGGCCACCAAAA 61.678 55.000 2.24 0.00 0.00 2.44
3473 9536 2.128507 GGTCCAAACGGCCACCAAA 61.129 57.895 2.24 0.00 0.00 3.28
3474 9537 2.519780 GGTCCAAACGGCCACCAA 60.520 61.111 2.24 0.00 0.00 3.67
3475 9538 4.939368 CGGTCCAAACGGCCACCA 62.939 66.667 2.24 0.00 0.00 4.17
3484 9547 3.776347 TTTCAGGCGCCGGTCCAAA 62.776 57.895 26.04 16.18 0.00 3.28
3485 9548 3.776347 TTTTCAGGCGCCGGTCCAA 62.776 57.895 26.04 14.38 0.00 3.53
3486 9549 3.561120 ATTTTCAGGCGCCGGTCCA 62.561 57.895 26.04 11.26 0.00 4.02
3487 9550 2.340328 AATTTTCAGGCGCCGGTCC 61.340 57.895 26.04 4.86 0.00 4.46
3488 9551 1.154035 CAATTTTCAGGCGCCGGTC 60.154 57.895 26.04 0.00 0.00 4.79
3489 9552 2.635443 CCAATTTTCAGGCGCCGGT 61.635 57.895 26.04 3.99 0.00 5.28
3490 9553 2.181525 CCAATTTTCAGGCGCCGG 59.818 61.111 23.20 22.36 0.00 6.13
3491 9554 2.506881 GCCAATTTTCAGGCGCCG 60.507 61.111 23.20 16.49 41.70 6.46
3496 9559 1.512694 GGGCGAGCCAATTTTCAGG 59.487 57.895 16.65 0.00 37.98 3.86
3497 9560 1.137404 CGGGCGAGCCAATTTTCAG 59.863 57.895 16.65 0.00 37.98 3.02
3498 9561 2.339556 CCGGGCGAGCCAATTTTCA 61.340 57.895 16.65 0.00 37.98 2.69
3499 9562 2.489751 CCGGGCGAGCCAATTTTC 59.510 61.111 16.65 0.00 37.98 2.29
3500 9563 3.758931 GCCGGGCGAGCCAATTTT 61.759 61.111 16.65 0.00 37.98 1.82
3522 9585 2.550699 TTAACATGGAGGGGCGCAGG 62.551 60.000 10.83 0.00 0.00 4.85
3523 9586 0.466189 ATTAACATGGAGGGGCGCAG 60.466 55.000 10.83 0.00 0.00 5.18
3524 9587 0.465460 GATTAACATGGAGGGGCGCA 60.465 55.000 10.83 0.00 0.00 6.09
3525 9588 0.179018 AGATTAACATGGAGGGGCGC 60.179 55.000 0.00 0.00 0.00 6.53
3526 9589 1.873903 CGAGATTAACATGGAGGGGCG 60.874 57.143 0.00 0.00 0.00 6.13
3527 9590 1.884235 CGAGATTAACATGGAGGGGC 58.116 55.000 0.00 0.00 0.00 5.80


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.