Multiple sequence alignment - TraesCS4D01G041900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G041900 chr4D 100.000 3651 0 0 1 3651 19644429 19640779 0.000000e+00 6743.0
1 TraesCS4D01G041900 chr4D 90.241 789 49 13 911 1683 19553705 19552929 0.000000e+00 1005.0
2 TraesCS4D01G041900 chr4D 79.022 920 95 54 843 1678 19678292 19677387 1.150000e-149 540.0
3 TraesCS4D01G041900 chr4D 83.274 562 64 20 2311 2851 19676921 19676369 1.180000e-134 490.0
4 TraesCS4D01G041900 chr4D 83.992 531 43 20 2294 2791 19552908 19552387 4.270000e-129 472.0
5 TraesCS4D01G041900 chr4D 88.980 245 23 4 1730 1972 114579199 114578957 2.130000e-77 300.0
6 TraesCS4D01G041900 chr4D 82.650 317 51 3 218 530 484062771 484063087 9.980000e-71 278.0
7 TraesCS4D01G041900 chr4D 83.214 280 22 5 3394 3650 19552012 19551735 2.190000e-57 233.0
8 TraesCS4D01G041900 chr4D 86.408 206 25 3 582 786 19554101 19553898 4.750000e-54 222.0
9 TraesCS4D01G041900 chr4D 94.231 52 2 1 1969 2020 19677357 19677307 1.090000e-10 78.7
10 TraesCS4D01G041900 chr4B 90.611 1736 115 22 1730 3450 32179234 32177532 0.000000e+00 2259.0
11 TraesCS4D01G041900 chr4B 94.374 942 38 4 664 1590 32180573 32179632 0.000000e+00 1432.0
12 TraesCS4D01G041900 chr4B 86.520 816 65 14 911 1695 32173919 32173118 0.000000e+00 856.0
13 TraesCS4D01G041900 chr4B 86.991 638 51 13 2287 2895 32173120 32172486 0.000000e+00 689.0
14 TraesCS4D01G041900 chr4B 84.346 543 51 23 2311 2828 32251222 32250689 5.440000e-138 501.0
15 TraesCS4D01G041900 chr4B 90.882 340 28 3 962 1299 32252483 32252145 1.550000e-123 453.0
16 TraesCS4D01G041900 chr4B 84.430 456 58 10 227 674 32183678 32183228 1.560000e-118 436.0
17 TraesCS4D01G041900 chr4B 89.062 256 18 3 1582 1827 32179497 32179242 3.540000e-80 309.0
18 TraesCS4D01G041900 chr4B 82.234 394 30 23 1335 1702 32252078 32251699 1.650000e-78 303.0
19 TraesCS4D01G041900 chr4B 91.981 212 17 0 3439 3650 32175835 32175624 7.660000e-77 298.0
20 TraesCS4D01G041900 chr4B 82.857 350 31 6 3327 3650 32172472 32172126 1.660000e-73 287.0
21 TraesCS4D01G041900 chr4B 81.908 304 44 7 250 543 15432526 15432224 2.820000e-61 246.0
22 TraesCS4D01G041900 chr4B 82.710 214 35 2 582 795 32174322 32174111 4.810000e-44 189.0
23 TraesCS4D01G041900 chr4B 94.231 52 2 1 1969 2020 32251686 32251636 1.090000e-10 78.7
24 TraesCS4D01G041900 chr4A 92.162 1429 84 12 534 1943 581324425 581325844 0.000000e+00 1993.0
25 TraesCS4D01G041900 chr4A 91.273 1100 66 10 1939 3017 581326100 581327190 0.000000e+00 1472.0
26 TraesCS4D01G041900 chr4A 86.082 855 65 15 904 1723 581329668 581330503 0.000000e+00 870.0
27 TraesCS4D01G041900 chr4A 93.772 562 33 1 3086 3647 581327431 581327990 0.000000e+00 843.0
28 TraesCS4D01G041900 chr4A 88.022 551 44 9 1 545 581317249 581317783 1.850000e-177 632.0
29 TraesCS4D01G041900 chr4A 82.857 630 53 27 2285 2895 581330530 581331123 6.990000e-142 514.0
30 TraesCS4D01G041900 chr4A 84.658 541 54 20 2311 2828 581279390 581279924 2.510000e-141 512.0
31 TraesCS4D01G041900 chr4A 88.259 247 25 4 1724 1968 742356627 742356871 3.570000e-75 292.0
32 TraesCS4D01G041900 chr4A 81.424 323 38 16 975 1286 581278159 581278470 1.010000e-60 244.0
33 TraesCS4D01G041900 chr4A 84.834 211 30 2 582 792 581329296 581329504 1.030000e-50 211.0
34 TraesCS4D01G041900 chr4A 90.476 147 8 4 2143 2288 154384140 154384281 4.810000e-44 189.0
35 TraesCS4D01G041900 chr4A 88.462 52 5 1 1969 2020 581278951 581279001 1.090000e-05 62.1
36 TraesCS4D01G041900 chr5D 83.416 404 50 12 2916 3309 377955881 377956277 3.470000e-95 359.0
37 TraesCS4D01G041900 chr3B 82.064 407 62 8 2920 3320 807947389 807946988 1.620000e-88 337.0
38 TraesCS4D01G041900 chr3B 89.388 245 22 4 1730 1972 538816087 538815845 4.580000e-79 305.0
39 TraesCS4D01G041900 chr3B 76.541 503 80 24 88 559 650808520 650809015 1.310000e-59 241.0
40 TraesCS4D01G041900 chr2A 83.146 356 46 9 2955 3301 29749522 29749872 2.740000e-81 313.0
41 TraesCS4D01G041900 chr2A 77.436 390 66 15 229 598 684440342 684440729 2.860000e-51 213.0
42 TraesCS4D01G041900 chr1D 87.739 261 22 8 1724 1979 100461855 100462110 2.760000e-76 296.0
43 TraesCS4D01G041900 chr1D 87.600 250 29 2 1724 1972 276797345 276797593 4.610000e-74 289.0
44 TraesCS4D01G041900 chr1D 88.000 100 11 1 2917 3015 338056226 338056127 2.300000e-22 117.0
45 TraesCS4D01G041900 chr1B 88.525 244 27 1 1730 1972 562894147 562893904 9.910000e-76 294.0
46 TraesCS4D01G041900 chr1B 88.306 248 23 6 1724 1969 430157870 430158113 3.570000e-75 292.0
47 TraesCS4D01G041900 chr1B 77.536 414 82 8 218 622 312554984 312555395 4.710000e-59 239.0
48 TraesCS4D01G041900 chr2B 87.854 247 23 6 1730 1972 465133165 465132922 2.150000e-72 283.0
49 TraesCS4D01G041900 chr6B 79.756 410 59 13 2920 3324 21154890 21154500 3.590000e-70 276.0
50 TraesCS4D01G041900 chr6B 79.843 382 52 17 2943 3315 423402247 423401882 4.680000e-64 255.0
51 TraesCS4D01G041900 chr6B 79.104 134 15 8 2920 3043 464921031 464920901 3.020000e-11 80.5
52 TraesCS4D01G041900 chr5B 81.429 350 45 13 2982 3325 679320885 679321220 6.010000e-68 268.0
53 TraesCS4D01G041900 chr5B 75.879 398 79 13 229 616 557801451 557801061 1.730000e-43 187.0
54 TraesCS4D01G041900 chr2D 80.697 373 48 13 2968 3325 35036210 35036573 6.010000e-68 268.0
55 TraesCS4D01G041900 chr6A 82.877 292 38 10 3032 3315 572153877 572153590 6.050000e-63 252.0
56 TraesCS4D01G041900 chr3A 81.100 291 49 5 250 536 171541438 171541150 1.020000e-55 228.0
57 TraesCS4D01G041900 chr7A 87.770 139 13 3 2152 2288 129841026 129841162 3.770000e-35 159.0
58 TraesCS4D01G041900 chrUn 83.465 127 15 6 2907 3030 29812604 29812481 2.980000e-21 113.0
59 TraesCS4D01G041900 chr6D 92.000 75 6 0 2214 2288 94688252 94688326 4.990000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G041900 chr4D 19640779 19644429 3650 True 6743.000000 6743 100.000000 1 3651 1 chr4D.!!$R1 3650
1 TraesCS4D01G041900 chr4D 19551735 19554101 2366 True 483.000000 1005 85.963750 582 3650 4 chr4D.!!$R3 3068
2 TraesCS4D01G041900 chr4D 19676369 19678292 1923 True 369.566667 540 85.509000 843 2851 3 chr4D.!!$R4 2008
3 TraesCS4D01G041900 chr4B 32172126 32183678 11552 True 750.555556 2259 87.726222 227 3650 9 chr4B.!!$R2 3423
4 TraesCS4D01G041900 chr4B 32250689 32252483 1794 True 333.925000 501 87.923250 962 2828 4 chr4B.!!$R3 1866
5 TraesCS4D01G041900 chr4A 581324425 581331123 6698 False 983.833333 1993 88.496667 534 3647 6 chr4A.!!$F5 3113
6 TraesCS4D01G041900 chr4A 581317249 581317783 534 False 632.000000 632 88.022000 1 545 1 chr4A.!!$F2 544
7 TraesCS4D01G041900 chr4A 581278159 581279924 1765 False 272.700000 512 84.848000 975 2828 3 chr4A.!!$F4 1853

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
677 3356 0.249826 GTAACAACGTGGGAACGGGA 60.250 55.0 3.09 0.00 37.45 5.14 F
1321 4036 0.038067 TCCGTCCGCTGATTTCGAAA 60.038 50.0 13.91 13.91 0.00 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2593 12306 0.175760 ACGCCGTGCAGATGATTAGT 59.824 50.0 0.0 0.0 0.00 2.24 R
3278 13249 0.108186 CCTAGTGCGATTGAGGTGCA 60.108 55.0 0.0 0.0 36.02 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.827411 GGATCTATTATAAAAATTCGCCTGAAC 57.173 33.333 0.00 0.00 36.81 3.18
79 80 4.871993 ACACTGCGATTTTGAGATCATC 57.128 40.909 0.00 0.00 0.00 2.92
93 94 7.770801 TTGAGATCATCGAACGAACATAATT 57.229 32.000 0.12 0.00 0.00 1.40
105 106 8.311822 CGAACGAACATAATTAAGACTACACTG 58.688 37.037 0.00 0.00 0.00 3.66
136 137 4.611943 AGATCATCGAACGACCACTATTG 58.388 43.478 0.00 0.00 0.00 1.90
161 162 1.004927 CAGAATAAGCCGCTAACACGC 60.005 52.381 0.00 0.00 0.00 5.34
162 163 0.303796 GAATAAGCCGCTAACACGCC 59.696 55.000 0.00 0.00 0.00 5.68
223 229 1.072331 GAGCTGGAAAGTCTGGACCAA 59.928 52.381 0.00 0.00 31.85 3.67
225 231 1.476833 GCTGGAAAGTCTGGACCAACA 60.477 52.381 0.00 0.00 31.85 3.33
233 239 1.134220 GTCTGGACCAACACACTGGAA 60.134 52.381 0.00 0.00 38.96 3.53
323 329 2.922740 AAACTCTAACTTCACCGGCA 57.077 45.000 0.00 0.00 0.00 5.69
390 396 3.505680 CCAGATAGATGAACTCGAGGAGG 59.494 52.174 18.41 0.00 33.35 4.30
392 398 4.215399 CAGATAGATGAACTCGAGGAGGAC 59.785 50.000 18.41 5.29 33.35 3.85
395 401 1.038130 ATGAACTCGAGGAGGACCGG 61.038 60.000 18.41 0.00 41.83 5.28
397 403 0.964358 GAACTCGAGGAGGACCGGAA 60.964 60.000 18.41 0.00 41.83 4.30
417 423 4.497507 GGAACCCGAAAGACAAACTTGAAG 60.498 45.833 0.00 0.00 38.98 3.02
420 426 4.703093 ACCCGAAAGACAAACTTGAAGAAA 59.297 37.500 0.00 0.00 38.98 2.52
447 453 0.955428 GAATCCGTCCAAGTGCAGCA 60.955 55.000 0.00 0.00 0.00 4.41
448 454 1.237285 AATCCGTCCAAGTGCAGCAC 61.237 55.000 18.55 18.55 34.10 4.40
449 455 3.357079 CCGTCCAAGTGCAGCACC 61.357 66.667 22.41 5.28 34.49 5.01
450 456 2.281070 CGTCCAAGTGCAGCACCT 60.281 61.111 22.41 6.33 34.49 4.00
452 458 1.291877 CGTCCAAGTGCAGCACCTAC 61.292 60.000 22.41 13.38 34.49 3.18
505 511 2.124695 GTGGAGGCACCGGGATTC 60.125 66.667 6.32 0.00 42.61 2.52
506 512 3.407967 TGGAGGCACCGGGATTCC 61.408 66.667 6.32 8.02 42.61 3.01
507 513 4.191015 GGAGGCACCGGGATTCCC 62.191 72.222 12.14 12.14 41.09 3.97
519 528 1.373059 GATTCCCCTCTCCGCCATC 59.627 63.158 0.00 0.00 0.00 3.51
540 554 2.042831 CCGCAAGAGGGCAGAAAGG 61.043 63.158 0.00 0.00 43.02 3.11
546 560 1.872773 AGAGGGCAGAAAGGAGGTAG 58.127 55.000 0.00 0.00 0.00 3.18
563 577 2.946988 TAGATCCACAGGCTCCCCGG 62.947 65.000 0.00 0.00 35.76 5.73
580 594 0.682852 CGGTGTAGTCTGGTTGGGAA 59.317 55.000 0.00 0.00 0.00 3.97
593 607 1.127343 TTGGGAAAGTTTGCCCTTGG 58.873 50.000 21.98 0.00 44.96 3.61
625 639 0.778083 GGGGAGGAAACAAGAGGGTT 59.222 55.000 0.00 0.00 0.00 4.11
638 652 0.955905 GAGGGTTGTGCGCCTTTTTA 59.044 50.000 4.18 0.00 0.00 1.52
647 661 2.033236 GTGCGCCTTTTTAAAGTTTGCC 60.033 45.455 4.18 0.00 34.20 4.52
662 676 0.941542 TTGCCACGCAAGACTGTAAC 59.058 50.000 0.00 0.00 43.99 2.50
668 3347 1.591158 ACGCAAGACTGTAACAACGTG 59.409 47.619 0.00 0.00 43.62 4.49
671 3350 2.828877 CAAGACTGTAACAACGTGGGA 58.171 47.619 0.00 0.00 0.00 4.37
674 3353 1.523934 GACTGTAACAACGTGGGAACG 59.476 52.381 0.00 0.00 39.31 3.95
677 3356 0.249826 GTAACAACGTGGGAACGGGA 60.250 55.000 3.09 0.00 37.45 5.14
823 3506 5.316987 CCTCTGTCCCTACTTTTCAACAAT 58.683 41.667 0.00 0.00 0.00 2.71
1011 3722 4.430765 ACGACGATGGCGGTGTCC 62.431 66.667 0.00 0.00 43.17 4.02
1012 3723 4.129737 CGACGATGGCGGTGTCCT 62.130 66.667 0.00 0.00 43.17 3.85
1155 3866 3.324268 TGATTTGCCCATTTTTGCTCTGA 59.676 39.130 0.00 0.00 0.00 3.27
1160 3871 3.387374 TGCCCATTTTTGCTCTGAAGAAA 59.613 39.130 0.00 0.00 0.00 2.52
1166 3877 7.148474 CCCATTTTTGCTCTGAAGAAATTGATG 60.148 37.037 0.00 0.00 0.00 3.07
1167 3878 7.148474 CCATTTTTGCTCTGAAGAAATTGATGG 60.148 37.037 0.00 0.00 0.00 3.51
1265 3980 1.089920 CGAGAACAAGGATGCCAAGG 58.910 55.000 0.00 0.00 0.00 3.61
1293 4008 3.760035 CGTCCAGGTCTGTCCCCG 61.760 72.222 0.00 0.00 36.75 5.73
1321 4036 0.038067 TCCGTCCGCTGATTTCGAAA 60.038 50.000 13.91 13.91 0.00 3.46
1352 4070 3.424962 GCTAAATTCTCGTGGACTTGTGC 60.425 47.826 0.00 0.00 0.00 4.57
1590 4451 3.317149 CAGATGATGATGGCGTCCAAATT 59.683 43.478 3.88 0.00 36.95 1.82
1702 4566 7.668886 TGGGAATTTTACATGCCATTTGATTTT 59.331 29.630 0.00 0.00 31.50 1.82
1754 4733 3.932710 GTCTGCATATGAGTTTTGACCGA 59.067 43.478 6.97 0.00 0.00 4.69
1835 4814 6.264832 TGCCAAATCAATATTGTTAGCTTCG 58.735 36.000 14.97 0.00 0.00 3.79
1931 4910 5.779529 AACTCTGCAATGTTTGACTTGAT 57.220 34.783 0.00 0.00 0.00 2.57
2023 5263 3.566523 GTGAGTAGGTCAGAACAGTTCG 58.433 50.000 7.68 3.54 35.13 3.95
2184 5438 8.717821 CCTCAAAGTTTATTACTCATCAAACGA 58.282 33.333 0.00 0.00 35.54 3.85
2300 5554 6.381707 CCATTGATGGGCATGATAATTGGATA 59.618 38.462 0.00 0.00 44.31 2.59
2340 5594 5.426833 ACCTAAGCTTCTGTCCTATGTCAAT 59.573 40.000 0.00 0.00 0.00 2.57
2351 5605 3.132289 TCCTATGTCAATCACTCCGGTTC 59.868 47.826 0.00 0.00 0.00 3.62
2384 12078 0.246635 TAGGAGCAAAGTCGTGAGCC 59.753 55.000 0.00 0.00 0.00 4.70
2512 12225 5.684704 TGTCCAGTCAGTTCTCATTTTTCT 58.315 37.500 0.00 0.00 0.00 2.52
2567 12280 1.815408 GCTTTGGTGAACTCTGCAGGA 60.815 52.381 15.13 0.00 0.00 3.86
2588 12301 1.612463 GTCTCAACTACCCGGCGATAT 59.388 52.381 9.30 0.00 0.00 1.63
2649 12362 1.133482 TGTCATCAGGGAGGCGATCTA 60.133 52.381 0.00 0.00 0.00 1.98
2761 12496 3.308866 GTGTGTGCGTCTGTTTTACTCTT 59.691 43.478 0.00 0.00 0.00 2.85
2762 12497 3.554324 TGTGTGCGTCTGTTTTACTCTTC 59.446 43.478 0.00 0.00 0.00 2.87
2763 12498 3.554324 GTGTGCGTCTGTTTTACTCTTCA 59.446 43.478 0.00 0.00 0.00 3.02
2764 12499 3.802139 TGTGCGTCTGTTTTACTCTTCAG 59.198 43.478 0.00 0.00 0.00 3.02
2773 12508 8.652463 GTCTGTTTTACTCTTCAGAGAATAAGC 58.348 37.037 10.93 4.61 44.74 3.09
2774 12509 8.367911 TCTGTTTTACTCTTCAGAGAATAAGCA 58.632 33.333 10.93 8.20 44.74 3.91
2823 12560 4.037565 AGGTTTTAGGTTTTGCAGTACAGC 59.962 41.667 2.82 2.82 0.00 4.40
2894 12865 2.851263 TGCTTGTTGTTATCTCCGGT 57.149 45.000 0.00 0.00 0.00 5.28
2895 12866 2.695359 TGCTTGTTGTTATCTCCGGTC 58.305 47.619 0.00 0.00 0.00 4.79
2896 12867 2.037902 TGCTTGTTGTTATCTCCGGTCA 59.962 45.455 0.00 0.00 0.00 4.02
2897 12868 2.673368 GCTTGTTGTTATCTCCGGTCAG 59.327 50.000 0.00 0.00 0.00 3.51
2898 12869 3.864921 GCTTGTTGTTATCTCCGGTCAGT 60.865 47.826 0.00 0.00 0.00 3.41
2899 12870 4.315803 CTTGTTGTTATCTCCGGTCAGTT 58.684 43.478 0.00 0.00 0.00 3.16
2900 12871 4.345859 TGTTGTTATCTCCGGTCAGTTT 57.654 40.909 0.00 0.00 0.00 2.66
2904 12875 4.566004 TGTTATCTCCGGTCAGTTTTGAG 58.434 43.478 0.00 0.00 32.98 3.02
2915 12886 4.097892 GGTCAGTTTTGAGGTTGATGTTGT 59.902 41.667 0.00 0.00 32.98 3.32
2916 12887 5.298276 GGTCAGTTTTGAGGTTGATGTTGTA 59.702 40.000 0.00 0.00 32.98 2.41
2917 12888 6.016276 GGTCAGTTTTGAGGTTGATGTTGTAT 60.016 38.462 0.00 0.00 32.98 2.29
2918 12889 6.857964 GTCAGTTTTGAGGTTGATGTTGTATG 59.142 38.462 0.00 0.00 32.98 2.39
2919 12890 5.630680 CAGTTTTGAGGTTGATGTTGTATGC 59.369 40.000 0.00 0.00 0.00 3.14
2920 12891 5.301551 AGTTTTGAGGTTGATGTTGTATGCA 59.698 36.000 0.00 0.00 0.00 3.96
2921 12892 5.375417 TTTGAGGTTGATGTTGTATGCAG 57.625 39.130 0.00 0.00 0.00 4.41
2922 12893 3.346315 TGAGGTTGATGTTGTATGCAGG 58.654 45.455 0.00 0.00 0.00 4.85
2923 12894 2.684881 GAGGTTGATGTTGTATGCAGGG 59.315 50.000 0.00 0.00 0.00 4.45
2924 12895 1.134946 GGTTGATGTTGTATGCAGGGC 59.865 52.381 0.00 0.00 0.00 5.19
2925 12896 1.134946 GTTGATGTTGTATGCAGGGCC 59.865 52.381 0.00 0.00 0.00 5.80
2926 12897 0.747644 TGATGTTGTATGCAGGGCCG 60.748 55.000 0.00 0.00 0.00 6.13
2927 12898 1.447317 GATGTTGTATGCAGGGCCGG 61.447 60.000 0.00 0.00 0.00 6.13
2928 12899 3.518068 GTTGTATGCAGGGCCGGC 61.518 66.667 22.43 22.43 0.00 6.13
2929 12900 4.813235 TTGTATGCAGGGCCGGCC 62.813 66.667 38.57 38.57 0.00 6.13
2944 12915 2.043046 GCCCTAGGCCATGGCAAA 60.043 61.111 36.56 22.75 44.06 3.68
2945 12916 1.685421 GCCCTAGGCCATGGCAAAA 60.685 57.895 36.56 20.23 44.06 2.44
2946 12917 1.679559 GCCCTAGGCCATGGCAAAAG 61.680 60.000 36.56 27.18 44.06 2.27
2947 12918 1.044790 CCCTAGGCCATGGCAAAAGG 61.045 60.000 36.56 33.00 44.11 3.11
2948 12919 0.324645 CCTAGGCCATGGCAAAAGGT 60.325 55.000 36.56 16.11 44.11 3.50
2949 12920 1.064017 CCTAGGCCATGGCAAAAGGTA 60.064 52.381 36.56 16.36 44.11 3.08
2950 12921 2.024414 CTAGGCCATGGCAAAAGGTAC 58.976 52.381 36.56 17.44 44.11 3.34
2951 12922 0.965363 AGGCCATGGCAAAAGGTACG 60.965 55.000 36.56 0.00 44.11 3.67
2952 12923 0.963355 GGCCATGGCAAAAGGTACGA 60.963 55.000 36.56 0.00 44.11 3.43
2953 12924 0.170339 GCCATGGCAAAAGGTACGAC 59.830 55.000 32.08 0.00 41.49 4.34
2954 12925 0.446222 CCATGGCAAAAGGTACGACG 59.554 55.000 0.00 0.00 0.00 5.12
2955 12926 0.446222 CATGGCAAAAGGTACGACGG 59.554 55.000 0.00 0.00 0.00 4.79
2956 12927 1.303091 ATGGCAAAAGGTACGACGGC 61.303 55.000 0.00 0.00 0.00 5.68
2957 12928 2.683859 GGCAAAAGGTACGACGGCC 61.684 63.158 0.00 0.00 0.00 6.13
2958 12929 1.670083 GCAAAAGGTACGACGGCCT 60.670 57.895 0.00 7.32 36.51 5.19
2959 12930 0.390209 GCAAAAGGTACGACGGCCTA 60.390 55.000 12.56 0.00 34.15 3.93
2960 12931 1.636988 CAAAAGGTACGACGGCCTAG 58.363 55.000 12.56 0.00 34.15 3.02
2961 12932 0.533951 AAAAGGTACGACGGCCTAGG 59.466 55.000 3.67 3.67 34.15 3.02
2962 12933 1.325476 AAAGGTACGACGGCCTAGGG 61.325 60.000 11.72 0.00 34.15 3.53
2977 12948 4.336280 GCCTAGGGCCATCTTAAATAAGG 58.664 47.826 11.72 0.00 44.06 2.69
2978 12949 4.811063 GCCTAGGGCCATCTTAAATAAGGG 60.811 50.000 11.72 0.00 44.06 3.95
2979 12950 3.244887 AGGGCCATCTTAAATAAGGGC 57.755 47.619 6.18 10.34 43.51 5.19
2980 12951 2.791774 AGGGCCATCTTAAATAAGGGCT 59.208 45.455 6.18 0.85 43.70 5.19
2981 12952 3.157881 GGGCCATCTTAAATAAGGGCTC 58.842 50.000 4.39 10.72 43.70 4.70
2982 12953 3.436470 GGGCCATCTTAAATAAGGGCTCA 60.436 47.826 4.39 0.00 39.47 4.26
2983 12954 4.215109 GGCCATCTTAAATAAGGGCTCAA 58.785 43.478 15.52 0.00 39.27 3.02
2984 12955 4.835056 GGCCATCTTAAATAAGGGCTCAAT 59.165 41.667 15.52 0.00 39.27 2.57
2985 12956 6.010219 GGCCATCTTAAATAAGGGCTCAATA 58.990 40.000 15.52 0.00 39.27 1.90
2986 12957 6.665248 GGCCATCTTAAATAAGGGCTCAATAT 59.335 38.462 15.52 0.00 39.27 1.28
2987 12958 7.834181 GGCCATCTTAAATAAGGGCTCAATATA 59.166 37.037 15.52 0.00 39.27 0.86
2988 12959 9.413734 GCCATCTTAAATAAGGGCTCAATATAT 57.586 33.333 11.14 0.00 37.53 0.86
3054 13025 2.134789 AATCAACATGGACAGGAGGC 57.865 50.000 0.00 0.00 0.00 4.70
3055 13026 0.994247 ATCAACATGGACAGGAGGCA 59.006 50.000 0.00 0.00 0.00 4.75
3056 13027 0.994247 TCAACATGGACAGGAGGCAT 59.006 50.000 0.00 0.00 0.00 4.40
3057 13028 2.195727 TCAACATGGACAGGAGGCATA 58.804 47.619 0.00 0.00 0.00 3.14
3058 13029 2.779430 TCAACATGGACAGGAGGCATAT 59.221 45.455 0.00 0.00 0.00 1.78
3059 13030 3.144506 CAACATGGACAGGAGGCATATC 58.855 50.000 0.00 0.00 0.00 1.63
3060 13031 1.701847 ACATGGACAGGAGGCATATCC 59.298 52.381 0.00 0.00 39.89 2.59
3061 13032 1.004044 CATGGACAGGAGGCATATCCC 59.996 57.143 0.00 0.00 40.53 3.85
3062 13033 0.768221 TGGACAGGAGGCATATCCCC 60.768 60.000 0.00 0.00 40.53 4.81
3063 13034 1.492993 GGACAGGAGGCATATCCCCC 61.493 65.000 0.00 0.00 40.53 5.40
3078 13049 2.040278 CCCCCTCCTCAGCTCACT 59.960 66.667 0.00 0.00 0.00 3.41
3079 13050 1.614824 CCCCCTCCTCAGCTCACTT 60.615 63.158 0.00 0.00 0.00 3.16
3080 13051 0.325671 CCCCCTCCTCAGCTCACTTA 60.326 60.000 0.00 0.00 0.00 2.24
3081 13052 1.573108 CCCCTCCTCAGCTCACTTAA 58.427 55.000 0.00 0.00 0.00 1.85
3082 13053 2.122768 CCCCTCCTCAGCTCACTTAAT 58.877 52.381 0.00 0.00 0.00 1.40
3083 13054 2.103941 CCCCTCCTCAGCTCACTTAATC 59.896 54.545 0.00 0.00 0.00 1.75
3084 13055 2.768527 CCCTCCTCAGCTCACTTAATCA 59.231 50.000 0.00 0.00 0.00 2.57
3085 13056 3.181467 CCCTCCTCAGCTCACTTAATCAG 60.181 52.174 0.00 0.00 0.00 2.90
3086 13057 3.181467 CCTCCTCAGCTCACTTAATCAGG 60.181 52.174 0.00 0.00 0.00 3.86
3087 13058 3.445008 TCCTCAGCTCACTTAATCAGGT 58.555 45.455 0.00 0.00 0.00 4.00
3088 13059 3.449018 TCCTCAGCTCACTTAATCAGGTC 59.551 47.826 0.00 0.00 0.00 3.85
3089 13060 3.443037 CTCAGCTCACTTAATCAGGTCG 58.557 50.000 0.00 0.00 0.00 4.79
3090 13061 2.826128 TCAGCTCACTTAATCAGGTCGT 59.174 45.455 0.00 0.00 0.00 4.34
3091 13062 4.014406 TCAGCTCACTTAATCAGGTCGTA 58.986 43.478 0.00 0.00 0.00 3.43
3092 13063 4.645136 TCAGCTCACTTAATCAGGTCGTAT 59.355 41.667 0.00 0.00 0.00 3.06
3093 13064 5.127194 TCAGCTCACTTAATCAGGTCGTATT 59.873 40.000 0.00 0.00 0.00 1.89
3094 13065 5.812642 CAGCTCACTTAATCAGGTCGTATTT 59.187 40.000 0.00 0.00 0.00 1.40
3095 13066 6.978659 CAGCTCACTTAATCAGGTCGTATTTA 59.021 38.462 0.00 0.00 0.00 1.40
3096 13067 7.653713 CAGCTCACTTAATCAGGTCGTATTTAT 59.346 37.037 0.00 0.00 0.00 1.40
3097 13068 8.204836 AGCTCACTTAATCAGGTCGTATTTATT 58.795 33.333 0.00 0.00 0.00 1.40
3098 13069 8.827677 GCTCACTTAATCAGGTCGTATTTATTT 58.172 33.333 0.00 0.00 0.00 1.40
3221 13192 8.967664 TTACGTTTATGCCCTTATATTGTTCT 57.032 30.769 0.00 0.00 0.00 3.01
3222 13193 7.875327 ACGTTTATGCCCTTATATTGTTCTT 57.125 32.000 0.00 0.00 0.00 2.52
3223 13194 7.703328 ACGTTTATGCCCTTATATTGTTCTTG 58.297 34.615 0.00 0.00 0.00 3.02
3224 13195 7.554835 ACGTTTATGCCCTTATATTGTTCTTGA 59.445 33.333 0.00 0.00 0.00 3.02
3225 13196 8.567948 CGTTTATGCCCTTATATTGTTCTTGAT 58.432 33.333 0.00 0.00 0.00 2.57
3230 13201 8.771920 TGCCCTTATATTGTTCTTGATATACG 57.228 34.615 0.00 0.00 0.00 3.06
3231 13202 8.590204 TGCCCTTATATTGTTCTTGATATACGA 58.410 33.333 0.00 0.00 0.00 3.43
3232 13203 9.601217 GCCCTTATATTGTTCTTGATATACGAT 57.399 33.333 0.00 0.00 0.00 3.73
3283 13254 8.040716 ACTACTCTGTTAATGTTTATTGCACC 57.959 34.615 0.00 0.00 0.00 5.01
3284 13255 7.883311 ACTACTCTGTTAATGTTTATTGCACCT 59.117 33.333 0.00 0.00 0.00 4.00
3285 13256 7.145932 ACTCTGTTAATGTTTATTGCACCTC 57.854 36.000 0.00 0.00 0.00 3.85
3286 13257 6.714810 ACTCTGTTAATGTTTATTGCACCTCA 59.285 34.615 0.00 0.00 0.00 3.86
3287 13258 7.230510 ACTCTGTTAATGTTTATTGCACCTCAA 59.769 33.333 0.00 0.00 39.32 3.02
3288 13259 8.121305 TCTGTTAATGTTTATTGCACCTCAAT 57.879 30.769 0.00 0.00 46.48 2.57
3289 13260 8.243426 TCTGTTAATGTTTATTGCACCTCAATC 58.757 33.333 0.00 0.00 43.90 2.67
3290 13261 7.026562 TGTTAATGTTTATTGCACCTCAATCG 58.973 34.615 0.00 0.00 43.90 3.34
3291 13262 3.485947 TGTTTATTGCACCTCAATCGC 57.514 42.857 0.00 0.00 43.90 4.58
3292 13263 2.816672 TGTTTATTGCACCTCAATCGCA 59.183 40.909 0.00 0.00 43.90 5.10
3293 13264 3.171277 GTTTATTGCACCTCAATCGCAC 58.829 45.455 0.00 0.00 43.90 5.34
3294 13265 2.401583 TATTGCACCTCAATCGCACT 57.598 45.000 0.00 0.00 43.90 4.40
3295 13266 2.401583 ATTGCACCTCAATCGCACTA 57.598 45.000 0.00 0.00 41.34 2.74
3296 13267 1.725641 TTGCACCTCAATCGCACTAG 58.274 50.000 0.00 0.00 34.87 2.57
3297 13268 0.108186 TGCACCTCAATCGCACTAGG 60.108 55.000 0.00 0.00 35.14 3.02
3298 13269 0.811616 GCACCTCAATCGCACTAGGG 60.812 60.000 0.00 0.00 33.16 3.53
3299 13270 0.811616 CACCTCAATCGCACTAGGGC 60.812 60.000 6.99 6.99 33.16 5.19
3300 13271 1.227674 CCTCAATCGCACTAGGGCC 60.228 63.158 12.39 0.00 0.00 5.80
3301 13272 1.690219 CCTCAATCGCACTAGGGCCT 61.690 60.000 12.39 12.58 0.00 5.19
3302 13273 0.249657 CTCAATCGCACTAGGGCCTC 60.250 60.000 10.74 0.00 0.00 4.70
3303 13274 1.227674 CAATCGCACTAGGGCCTCC 60.228 63.158 10.74 0.00 0.00 4.30
3304 13275 1.689233 AATCGCACTAGGGCCTCCA 60.689 57.895 10.74 0.00 34.83 3.86
3305 13276 1.056700 AATCGCACTAGGGCCTCCAT 61.057 55.000 10.74 0.00 34.83 3.41
3306 13277 0.178932 ATCGCACTAGGGCCTCCATA 60.179 55.000 10.74 0.00 34.83 2.74
3307 13278 0.397957 TCGCACTAGGGCCTCCATAA 60.398 55.000 10.74 0.00 34.83 1.90
3308 13279 0.687354 CGCACTAGGGCCTCCATAAT 59.313 55.000 10.74 0.00 34.83 1.28
3309 13280 1.899814 CGCACTAGGGCCTCCATAATA 59.100 52.381 10.74 0.00 34.83 0.98
3310 13281 2.353803 CGCACTAGGGCCTCCATAATAC 60.354 54.545 10.74 0.00 34.83 1.89
3311 13282 2.907042 GCACTAGGGCCTCCATAATACT 59.093 50.000 10.74 0.00 34.83 2.12
3312 13283 4.094476 GCACTAGGGCCTCCATAATACTA 58.906 47.826 10.74 0.00 34.83 1.82
3313 13284 4.160626 GCACTAGGGCCTCCATAATACTAG 59.839 50.000 10.74 0.00 34.83 2.57
3314 13285 4.712337 CACTAGGGCCTCCATAATACTAGG 59.288 50.000 10.74 0.00 32.79 3.02
3315 13286 3.945283 AGGGCCTCCATAATACTAGGT 57.055 47.619 0.00 0.00 34.83 3.08
3316 13287 3.792515 AGGGCCTCCATAATACTAGGTC 58.207 50.000 0.00 0.00 34.83 3.85
3317 13288 2.838813 GGGCCTCCATAATACTAGGTCC 59.161 54.545 0.84 0.00 46.10 4.46
3318 13289 2.496470 GGCCTCCATAATACTAGGTCCG 59.504 54.545 0.00 0.00 0.00 4.79
3319 13290 2.496470 GCCTCCATAATACTAGGTCCGG 59.504 54.545 0.00 0.00 0.00 5.14
3320 13291 3.775910 CCTCCATAATACTAGGTCCGGT 58.224 50.000 0.00 0.00 0.00 5.28
3321 13292 3.762823 CCTCCATAATACTAGGTCCGGTC 59.237 52.174 0.00 0.00 0.00 4.79
3322 13293 3.762823 CTCCATAATACTAGGTCCGGTCC 59.237 52.174 10.05 10.05 0.00 4.46
3323 13294 2.830321 CCATAATACTAGGTCCGGTCCC 59.170 54.545 14.60 9.44 0.00 4.46
3324 13295 2.276732 TAATACTAGGTCCGGTCCCG 57.723 55.000 14.60 8.49 39.44 5.14
3325 13296 0.552848 AATACTAGGTCCGGTCCCGA 59.447 55.000 14.60 4.91 42.83 5.14
3330 13301 0.258484 TAGGTCCGGTCCCGATTGTA 59.742 55.000 14.60 0.00 42.83 2.41
3337 13308 1.946768 CGGTCCCGATTGTATGCATTT 59.053 47.619 3.54 0.00 42.83 2.32
3348 13319 7.588854 CCGATTGTATGCATTTGTTTCTGATAG 59.411 37.037 3.54 0.00 0.00 2.08
3365 13339 7.200434 TCTGATAGAATTTTAAGCCTCCAGT 57.800 36.000 0.00 0.00 0.00 4.00
3370 13344 5.006386 AGAATTTTAAGCCTCCAGTCTGTG 58.994 41.667 0.00 0.00 0.00 3.66
3371 13345 3.857157 TTTTAAGCCTCCAGTCTGTGT 57.143 42.857 0.00 0.00 0.00 3.72
3372 13346 3.402628 TTTAAGCCTCCAGTCTGTGTC 57.597 47.619 0.00 0.00 0.00 3.67
3373 13347 2.009681 TAAGCCTCCAGTCTGTGTCA 57.990 50.000 0.00 0.00 0.00 3.58
3374 13348 0.683973 AAGCCTCCAGTCTGTGTCAG 59.316 55.000 0.00 0.00 0.00 3.51
3375 13349 0.470833 AGCCTCCAGTCTGTGTCAGT 60.471 55.000 0.00 0.00 32.61 3.41
3376 13350 0.394565 GCCTCCAGTCTGTGTCAGTT 59.605 55.000 0.00 0.00 32.61 3.16
3377 13351 1.606737 GCCTCCAGTCTGTGTCAGTTC 60.607 57.143 0.00 0.00 32.61 3.01
3378 13352 1.688735 CCTCCAGTCTGTGTCAGTTCA 59.311 52.381 0.00 0.00 32.61 3.18
3379 13353 2.546795 CCTCCAGTCTGTGTCAGTTCAC 60.547 54.545 0.00 0.00 38.63 3.18
3380 13354 2.101415 CTCCAGTCTGTGTCAGTTCACA 59.899 50.000 0.00 0.00 44.54 3.58
3381 13355 2.499693 TCCAGTCTGTGTCAGTTCACAA 59.500 45.455 0.00 0.00 45.70 3.33
3382 13356 2.868583 CCAGTCTGTGTCAGTTCACAAG 59.131 50.000 0.00 0.00 45.70 3.16
3383 13357 3.430790 CCAGTCTGTGTCAGTTCACAAGA 60.431 47.826 0.00 0.00 45.70 3.02
3384 13358 3.801050 CAGTCTGTGTCAGTTCACAAGAG 59.199 47.826 1.41 0.00 45.70 2.85
3385 13359 3.701542 AGTCTGTGTCAGTTCACAAGAGA 59.298 43.478 1.41 0.00 45.70 3.10
3386 13360 4.160439 AGTCTGTGTCAGTTCACAAGAGAA 59.840 41.667 1.41 0.00 45.70 2.87
3387 13361 4.505922 GTCTGTGTCAGTTCACAAGAGAAG 59.494 45.833 1.41 0.00 45.70 2.85
3388 13362 4.160439 TCTGTGTCAGTTCACAAGAGAAGT 59.840 41.667 1.41 0.00 45.70 3.01
3389 13363 5.359860 TCTGTGTCAGTTCACAAGAGAAGTA 59.640 40.000 1.41 0.00 45.70 2.24
3390 13364 5.348986 TGTGTCAGTTCACAAGAGAAGTAC 58.651 41.667 0.00 0.00 43.92 2.73
3391 13365 5.105513 TGTGTCAGTTCACAAGAGAAGTACA 60.106 40.000 0.00 0.00 43.92 2.90
3392 13366 5.460419 GTGTCAGTTCACAAGAGAAGTACAG 59.540 44.000 0.00 0.00 38.12 2.74
3399 13396 2.012673 CAAGAGAAGTACAGGGCATGC 58.987 52.381 9.90 9.90 0.00 4.06
3403 13400 1.065854 AGAAGTACAGGGCATGCTCAC 60.066 52.381 22.09 9.58 0.00 3.51
3420 13417 2.268022 ACCGTTGGTGTGCACAAAA 58.732 47.368 23.59 16.36 32.98 2.44
3481 13479 8.489990 ACTCAAATTATCTCACACATCAGAAG 57.510 34.615 0.00 0.00 0.00 2.85
3482 13480 8.099537 ACTCAAATTATCTCACACATCAGAAGT 58.900 33.333 0.00 0.00 0.00 3.01
3504 13502 4.330074 GTGTGTATACATGAGGCTGTCAAC 59.670 45.833 9.18 0.00 39.19 3.18
3507 13505 6.127196 TGTGTATACATGAGGCTGTCAACATA 60.127 38.462 9.18 0.00 39.19 2.29
3637 13661 3.230134 CTGCCTATTCTCCTCTAGCAGT 58.770 50.000 0.00 0.00 0.00 4.40
3647 13671 5.761205 TCTCCTCTAGCAGTAGTGAATCTT 58.239 41.667 0.42 0.00 0.00 2.40
3650 13674 5.592282 TCCTCTAGCAGTAGTGAATCTTCTG 59.408 44.000 0.42 0.00 42.11 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 5.005682 CGATGATCTCAAAATCGCAGTGTAA 59.994 40.000 0.00 0.00 37.06 2.41
62 63 3.000222 CGTTCGATGATCTCAAAATCGCA 60.000 43.478 7.34 0.00 42.20 5.10
64 65 5.183919 GTTCGTTCGATGATCTCAAAATCG 58.816 41.667 6.14 6.14 43.47 3.34
79 80 8.311822 CAGTGTAGTCTTAATTATGTTCGTTCG 58.688 37.037 0.00 0.00 0.00 3.95
93 94 7.553044 TGATCTCGAAATCTCAGTGTAGTCTTA 59.447 37.037 0.00 0.00 0.00 2.10
131 132 3.182572 GCGGCTTATTCTGACGACAATAG 59.817 47.826 0.00 0.00 38.36 1.73
136 137 2.486951 TAGCGGCTTATTCTGACGAC 57.513 50.000 8.26 0.00 38.36 4.34
162 163 2.901051 ATAAGGGAGCGGCGACAACG 62.901 60.000 12.98 0.00 42.93 4.10
189 190 1.423395 CAGCTCGACAAGGTCAAGAC 58.577 55.000 0.00 0.00 31.91 3.01
223 229 2.687935 GACAATTGTGGTTCCAGTGTGT 59.312 45.455 17.58 0.00 0.00 3.72
225 231 2.687935 GTGACAATTGTGGTTCCAGTGT 59.312 45.455 17.58 0.00 0.00 3.55
323 329 5.230942 CGTAGATTCCTGTTGTCTTCTTGT 58.769 41.667 0.00 0.00 0.00 3.16
392 398 5.384142 CAAGTTTGTCTTTCGGGTTCCGG 62.384 52.174 6.50 0.00 39.95 5.14
395 401 4.334481 TCTTCAAGTTTGTCTTTCGGGTTC 59.666 41.667 0.00 0.00 33.63 3.62
397 403 3.881220 TCTTCAAGTTTGTCTTTCGGGT 58.119 40.909 0.00 0.00 33.63 5.28
484 490 2.238319 ATCCCGGTGCCTCCACTCTA 62.238 60.000 0.00 0.00 41.75 2.43
522 531 2.042831 CCTTTCTGCCCTCTTGCGG 61.043 63.158 0.00 0.00 39.04 5.69
526 535 2.192263 CTACCTCCTTTCTGCCCTCTT 58.808 52.381 0.00 0.00 0.00 2.85
531 540 2.119495 TGGATCTACCTCCTTTCTGCC 58.881 52.381 0.00 0.00 39.86 4.85
538 552 0.639392 AGCCTGTGGATCTACCTCCT 59.361 55.000 6.77 0.00 39.86 3.69
540 554 1.044611 GGAGCCTGTGGATCTACCTC 58.955 60.000 6.77 6.14 38.31 3.85
546 560 3.866582 CCGGGGAGCCTGTGGATC 61.867 72.222 0.00 0.00 37.39 3.36
563 577 3.487120 ACTTTCCCAACCAGACTACAC 57.513 47.619 0.00 0.00 0.00 2.90
565 579 3.004419 GCAAACTTTCCCAACCAGACTAC 59.996 47.826 0.00 0.00 0.00 2.73
593 607 2.442272 TCCCCTGACTCTAGGCGC 60.442 66.667 0.00 0.00 36.47 6.53
625 639 2.605366 GCAAACTTTAAAAAGGCGCACA 59.395 40.909 10.83 0.00 40.31 4.57
647 661 1.591158 ACGTTGTTACAGTCTTGCGTG 59.409 47.619 0.00 0.00 0.00 5.34
662 676 0.739561 TTTTTCCCGTTCCCACGTTG 59.260 50.000 0.00 0.00 45.62 4.10
668 3347 1.166989 TATGCGTTTTTCCCGTTCCC 58.833 50.000 0.00 0.00 0.00 3.97
671 3350 4.506886 TCAATTATGCGTTTTTCCCGTT 57.493 36.364 0.00 0.00 0.00 4.44
674 3353 7.117667 ACTCAAATTCAATTATGCGTTTTTCCC 59.882 33.333 0.00 0.00 0.00 3.97
677 3356 9.649024 CAAACTCAAATTCAATTATGCGTTTTT 57.351 25.926 9.06 0.00 0.00 1.94
1012 3723 1.623811 GTACTCCTTGGTCAGCTCCAA 59.376 52.381 6.70 6.70 44.03 3.53
1155 3866 4.219288 GTCAAGCTCCACCATCAATTTCTT 59.781 41.667 0.00 0.00 0.00 2.52
1160 3871 1.278985 TCGTCAAGCTCCACCATCAAT 59.721 47.619 0.00 0.00 0.00 2.57
1166 3877 0.460987 CAGGATCGTCAAGCTCCACC 60.461 60.000 0.00 0.00 37.60 4.61
1167 3878 1.086634 GCAGGATCGTCAAGCTCCAC 61.087 60.000 0.00 0.00 37.60 4.02
1197 3912 3.771577 ACACCTTGTACCTGGAAGAAG 57.228 47.619 0.00 0.00 34.07 2.85
1321 4036 6.590677 GTCCACGAGAATTTAGCTAACTCTTT 59.409 38.462 15.27 4.83 0.00 2.52
1429 4147 2.359850 GATGACCGGGTGCTGCAA 60.360 61.111 3.30 0.00 0.00 4.08
1461 4179 1.748122 GGCGACGGTGTAGAGGAGA 60.748 63.158 0.00 0.00 0.00 3.71
1532 4250 3.325870 GAAAAGCAAACATACCCAAGCC 58.674 45.455 0.00 0.00 0.00 4.35
1725 4704 8.887717 GTCAAAACTCATATGCAGACTAAGAAT 58.112 33.333 0.00 0.00 0.00 2.40
1728 4707 6.237942 CGGTCAAAACTCATATGCAGACTAAG 60.238 42.308 0.00 0.00 0.00 2.18
1788 4767 7.599998 GGCATTGTGAATGTTGATACTTTTCTT 59.400 33.333 0.00 0.00 41.01 2.52
1845 4824 7.285172 TGCCAAACATGCATACTATGAAACTAT 59.715 33.333 0.00 0.00 32.85 2.12
1860 4839 4.654091 ACACCTATAATGCCAAACATGC 57.346 40.909 0.00 0.00 39.60 4.06
2023 5263 2.202783 GGAATTGCACCATGCCGC 60.203 61.111 0.00 0.00 44.23 6.53
2149 5396 8.422577 AGTAATAAACTTTGAGGGCTTCAATT 57.577 30.769 13.13 7.32 44.90 2.32
2156 5410 7.391148 TTGATGAGTAATAAACTTTGAGGGC 57.609 36.000 0.00 0.00 39.07 5.19
2172 5426 6.650807 ACATGATGTAACTTCGTTTGATGAGT 59.349 34.615 0.00 0.00 0.00 3.41
2184 5438 6.103997 CCCGTTGTACTACATGATGTAACTT 58.896 40.000 6.75 0.00 31.67 2.66
2300 5554 4.823989 GCTTAGGTAGGATTGCAACATCAT 59.176 41.667 0.00 0.00 0.00 2.45
2340 5594 0.392863 CATGCATGGAACCGGAGTGA 60.393 55.000 19.40 0.00 0.00 3.41
2384 12078 5.846203 ACCATTTTTCACACTCAATTCAGG 58.154 37.500 0.00 0.00 0.00 3.86
2512 12225 4.336889 ACAAGATCAGAACCACTTCGAA 57.663 40.909 0.00 0.00 0.00 3.71
2567 12280 0.683504 ATCGCCGGGTAGTTGAGACT 60.684 55.000 2.18 0.00 39.97 3.24
2569 12282 1.991121 ATATCGCCGGGTAGTTGAGA 58.009 50.000 2.18 0.00 0.00 3.27
2577 12290 0.538057 TAGTCCGAATATCGCCGGGT 60.538 55.000 2.18 3.21 45.36 5.28
2588 12301 2.481276 CCGTGCAGATGATTAGTCCGAA 60.481 50.000 0.00 0.00 0.00 4.30
2593 12306 0.175760 ACGCCGTGCAGATGATTAGT 59.824 50.000 0.00 0.00 0.00 2.24
2596 12309 2.167219 CGACGCCGTGCAGATGATT 61.167 57.895 0.00 0.00 0.00 2.57
2649 12362 0.321653 GCACATCAGTCCGGAACCTT 60.322 55.000 5.23 0.00 0.00 3.50
2761 12496 4.903649 TCTCCATCCATGCTTATTCTCTGA 59.096 41.667 0.00 0.00 0.00 3.27
2762 12497 4.996122 GTCTCCATCCATGCTTATTCTCTG 59.004 45.833 0.00 0.00 0.00 3.35
2763 12498 4.262377 CGTCTCCATCCATGCTTATTCTCT 60.262 45.833 0.00 0.00 0.00 3.10
2764 12499 3.993081 CGTCTCCATCCATGCTTATTCTC 59.007 47.826 0.00 0.00 0.00 2.87
2773 12508 2.113860 ACAAACCGTCTCCATCCATG 57.886 50.000 0.00 0.00 0.00 3.66
2774 12509 3.008594 TGTTACAAACCGTCTCCATCCAT 59.991 43.478 0.00 0.00 0.00 3.41
2823 12560 5.744490 AGATTTACGAAACCGTGTCAAAAG 58.256 37.500 0.00 0.00 40.88 2.27
2894 12865 6.514870 GCATACAACATCAACCTCAAAACTGA 60.515 38.462 0.00 0.00 0.00 3.41
2895 12866 5.630680 GCATACAACATCAACCTCAAAACTG 59.369 40.000 0.00 0.00 0.00 3.16
2896 12867 5.301551 TGCATACAACATCAACCTCAAAACT 59.698 36.000 0.00 0.00 0.00 2.66
2897 12868 5.527951 TGCATACAACATCAACCTCAAAAC 58.472 37.500 0.00 0.00 0.00 2.43
2898 12869 5.278907 CCTGCATACAACATCAACCTCAAAA 60.279 40.000 0.00 0.00 0.00 2.44
2899 12870 4.218200 CCTGCATACAACATCAACCTCAAA 59.782 41.667 0.00 0.00 0.00 2.69
2900 12871 3.758023 CCTGCATACAACATCAACCTCAA 59.242 43.478 0.00 0.00 0.00 3.02
2904 12875 1.134946 GCCCTGCATACAACATCAACC 59.865 52.381 0.00 0.00 0.00 3.77
2928 12899 1.044790 CCTTTTGCCATGGCCTAGGG 61.045 60.000 33.44 24.76 41.09 3.53
2929 12900 0.324645 ACCTTTTGCCATGGCCTAGG 60.325 55.000 31.74 31.74 41.09 3.02
2930 12901 2.024414 GTACCTTTTGCCATGGCCTAG 58.976 52.381 33.44 24.62 41.09 3.02
2931 12902 1.680555 CGTACCTTTTGCCATGGCCTA 60.681 52.381 33.44 18.99 41.09 3.93
2932 12903 0.965363 CGTACCTTTTGCCATGGCCT 60.965 55.000 33.44 11.26 41.09 5.19
2933 12904 0.963355 TCGTACCTTTTGCCATGGCC 60.963 55.000 33.44 16.23 41.09 5.36
2934 12905 0.170339 GTCGTACCTTTTGCCATGGC 59.830 55.000 30.54 30.54 42.35 4.40
2935 12906 0.446222 CGTCGTACCTTTTGCCATGG 59.554 55.000 7.63 7.63 0.00 3.66
2936 12907 0.446222 CCGTCGTACCTTTTGCCATG 59.554 55.000 0.00 0.00 0.00 3.66
2937 12908 1.303091 GCCGTCGTACCTTTTGCCAT 61.303 55.000 0.00 0.00 0.00 4.40
2938 12909 1.962306 GCCGTCGTACCTTTTGCCA 60.962 57.895 0.00 0.00 0.00 4.92
2939 12910 2.683859 GGCCGTCGTACCTTTTGCC 61.684 63.158 0.00 0.00 0.00 4.52
2940 12911 0.390209 TAGGCCGTCGTACCTTTTGC 60.390 55.000 9.13 0.00 37.50 3.68
2941 12912 1.636988 CTAGGCCGTCGTACCTTTTG 58.363 55.000 9.13 0.00 37.50 2.44
2942 12913 0.533951 CCTAGGCCGTCGTACCTTTT 59.466 55.000 9.13 0.00 37.50 2.27
2943 12914 1.325476 CCCTAGGCCGTCGTACCTTT 61.325 60.000 2.05 0.00 37.50 3.11
2944 12915 1.755783 CCCTAGGCCGTCGTACCTT 60.756 63.158 2.05 0.00 37.50 3.50
2945 12916 2.123982 CCCTAGGCCGTCGTACCT 60.124 66.667 2.05 8.88 40.24 3.08
2946 12917 3.909285 GCCCTAGGCCGTCGTACC 61.909 72.222 2.05 0.00 44.06 3.34
2955 12926 4.336280 CCTTATTTAAGATGGCCCTAGGC 58.664 47.826 2.05 0.00 40.84 3.93
2956 12927 4.811063 GCCCTTATTTAAGATGGCCCTAGG 60.811 50.000 0.06 0.06 35.74 3.02
2957 12928 4.043435 AGCCCTTATTTAAGATGGCCCTAG 59.957 45.833 0.00 0.00 39.78 3.02
2958 12929 3.987501 AGCCCTTATTTAAGATGGCCCTA 59.012 43.478 0.00 0.00 39.78 3.53
2959 12930 2.791774 AGCCCTTATTTAAGATGGCCCT 59.208 45.455 0.00 0.00 39.78 5.19
2960 12931 3.157881 GAGCCCTTATTTAAGATGGCCC 58.842 50.000 0.00 0.69 39.78 5.80
2961 12932 3.832527 TGAGCCCTTATTTAAGATGGCC 58.167 45.455 0.00 0.00 39.78 5.36
2962 12933 7.709149 ATATTGAGCCCTTATTTAAGATGGC 57.291 36.000 8.67 8.67 39.46 4.40
3032 13003 3.259123 GCCTCCTGTCCATGTTGATTTTT 59.741 43.478 0.00 0.00 0.00 1.94
3033 13004 2.827921 GCCTCCTGTCCATGTTGATTTT 59.172 45.455 0.00 0.00 0.00 1.82
3034 13005 2.225091 TGCCTCCTGTCCATGTTGATTT 60.225 45.455 0.00 0.00 0.00 2.17
3035 13006 1.355381 TGCCTCCTGTCCATGTTGATT 59.645 47.619 0.00 0.00 0.00 2.57
3036 13007 0.994247 TGCCTCCTGTCCATGTTGAT 59.006 50.000 0.00 0.00 0.00 2.57
3037 13008 0.994247 ATGCCTCCTGTCCATGTTGA 59.006 50.000 0.00 0.00 0.00 3.18
3038 13009 2.715749 TATGCCTCCTGTCCATGTTG 57.284 50.000 0.00 0.00 0.00 3.33
3039 13010 2.107204 GGATATGCCTCCTGTCCATGTT 59.893 50.000 0.00 0.00 32.18 2.71
3040 13011 1.701847 GGATATGCCTCCTGTCCATGT 59.298 52.381 0.00 0.00 32.18 3.21
3041 13012 1.004044 GGGATATGCCTCCTGTCCATG 59.996 57.143 5.91 0.00 35.50 3.66
3042 13013 1.366319 GGGATATGCCTCCTGTCCAT 58.634 55.000 5.91 0.00 35.50 3.41
3043 13014 0.768221 GGGGATATGCCTCCTGTCCA 60.768 60.000 13.55 0.00 35.50 4.02
3044 13015 2.070639 GGGGATATGCCTCCTGTCC 58.929 63.158 13.55 0.00 35.50 4.02
3061 13032 0.325671 TAAGTGAGCTGAGGAGGGGG 60.326 60.000 0.00 0.00 0.00 5.40
3062 13033 1.573108 TTAAGTGAGCTGAGGAGGGG 58.427 55.000 0.00 0.00 0.00 4.79
3063 13034 2.768527 TGATTAAGTGAGCTGAGGAGGG 59.231 50.000 0.00 0.00 0.00 4.30
3064 13035 3.181467 CCTGATTAAGTGAGCTGAGGAGG 60.181 52.174 0.00 0.00 0.00 4.30
3065 13036 3.450457 ACCTGATTAAGTGAGCTGAGGAG 59.550 47.826 0.00 0.00 0.00 3.69
3066 13037 3.445008 ACCTGATTAAGTGAGCTGAGGA 58.555 45.455 0.00 0.00 0.00 3.71
3067 13038 3.736433 CGACCTGATTAAGTGAGCTGAGG 60.736 52.174 0.00 0.00 0.00 3.86
3068 13039 3.119316 ACGACCTGATTAAGTGAGCTGAG 60.119 47.826 0.00 0.00 0.00 3.35
3069 13040 2.826128 ACGACCTGATTAAGTGAGCTGA 59.174 45.455 0.00 0.00 0.00 4.26
3070 13041 3.238108 ACGACCTGATTAAGTGAGCTG 57.762 47.619 0.00 0.00 0.00 4.24
3071 13042 5.599999 AATACGACCTGATTAAGTGAGCT 57.400 39.130 0.00 0.00 0.00 4.09
3072 13043 7.948278 ATAAATACGACCTGATTAAGTGAGC 57.052 36.000 0.00 0.00 0.00 4.26
3195 13166 9.398538 AGAACAATATAAGGGCATAAACGTAAA 57.601 29.630 0.00 0.00 0.00 2.01
3196 13167 8.967664 AGAACAATATAAGGGCATAAACGTAA 57.032 30.769 0.00 0.00 0.00 3.18
3197 13168 8.832521 CAAGAACAATATAAGGGCATAAACGTA 58.167 33.333 0.00 0.00 0.00 3.57
3198 13169 7.554835 TCAAGAACAATATAAGGGCATAAACGT 59.445 33.333 0.00 0.00 0.00 3.99
3199 13170 7.925993 TCAAGAACAATATAAGGGCATAAACG 58.074 34.615 0.00 0.00 0.00 3.60
3204 13175 9.383519 CGTATATCAAGAACAATATAAGGGCAT 57.616 33.333 0.00 0.00 0.00 4.40
3205 13176 8.590204 TCGTATATCAAGAACAATATAAGGGCA 58.410 33.333 0.00 0.00 0.00 5.36
3206 13177 8.997621 TCGTATATCAAGAACAATATAAGGGC 57.002 34.615 0.00 0.00 0.00 5.19
3257 13228 9.158233 GGTGCAATAAACATTAACAGAGTAGTA 57.842 33.333 0.00 0.00 0.00 1.82
3258 13229 7.883311 AGGTGCAATAAACATTAACAGAGTAGT 59.117 33.333 0.00 0.00 0.00 2.73
3259 13230 8.268850 AGGTGCAATAAACATTAACAGAGTAG 57.731 34.615 0.00 0.00 0.00 2.57
3260 13231 7.880713 TGAGGTGCAATAAACATTAACAGAGTA 59.119 33.333 0.00 0.00 0.00 2.59
3261 13232 6.714810 TGAGGTGCAATAAACATTAACAGAGT 59.285 34.615 0.00 0.00 0.00 3.24
3262 13233 7.144722 TGAGGTGCAATAAACATTAACAGAG 57.855 36.000 0.00 0.00 0.00 3.35
3263 13234 7.517614 TTGAGGTGCAATAAACATTAACAGA 57.482 32.000 0.00 0.00 0.00 3.41
3264 13235 7.218773 CGATTGAGGTGCAATAAACATTAACAG 59.781 37.037 0.00 0.00 46.90 3.16
3265 13236 7.026562 CGATTGAGGTGCAATAAACATTAACA 58.973 34.615 0.00 0.00 46.90 2.41
3266 13237 6.020678 GCGATTGAGGTGCAATAAACATTAAC 60.021 38.462 0.00 0.00 46.90 2.01
3267 13238 6.033341 GCGATTGAGGTGCAATAAACATTAA 58.967 36.000 0.00 0.00 46.90 1.40
3268 13239 5.124617 TGCGATTGAGGTGCAATAAACATTA 59.875 36.000 0.00 0.00 46.90 1.90
3269 13240 4.082300 TGCGATTGAGGTGCAATAAACATT 60.082 37.500 0.00 0.00 46.90 2.71
3270 13241 3.443329 TGCGATTGAGGTGCAATAAACAT 59.557 39.130 0.00 0.00 46.90 2.71
3271 13242 2.816672 TGCGATTGAGGTGCAATAAACA 59.183 40.909 0.00 0.00 46.90 2.83
3272 13243 3.119849 AGTGCGATTGAGGTGCAATAAAC 60.120 43.478 0.00 0.00 46.90 2.01
3273 13244 3.081061 AGTGCGATTGAGGTGCAATAAA 58.919 40.909 0.00 0.00 46.90 1.40
3274 13245 2.710377 AGTGCGATTGAGGTGCAATAA 58.290 42.857 0.00 0.00 46.90 1.40
3275 13246 2.401583 AGTGCGATTGAGGTGCAATA 57.598 45.000 0.00 0.00 46.90 1.90
3277 13248 1.675714 CCTAGTGCGATTGAGGTGCAA 60.676 52.381 0.00 0.00 40.83 4.08
3278 13249 0.108186 CCTAGTGCGATTGAGGTGCA 60.108 55.000 0.00 0.00 36.02 4.57
3279 13250 0.811616 CCCTAGTGCGATTGAGGTGC 60.812 60.000 0.00 0.00 0.00 5.01
3280 13251 0.811616 GCCCTAGTGCGATTGAGGTG 60.812 60.000 0.00 0.00 0.00 4.00
3281 13252 1.522569 GCCCTAGTGCGATTGAGGT 59.477 57.895 0.00 0.00 0.00 3.85
3282 13253 1.227674 GGCCCTAGTGCGATTGAGG 60.228 63.158 0.00 0.00 0.00 3.86
3283 13254 0.249657 GAGGCCCTAGTGCGATTGAG 60.250 60.000 0.00 0.00 0.00 3.02
3284 13255 1.686325 GGAGGCCCTAGTGCGATTGA 61.686 60.000 0.00 0.00 0.00 2.57
3285 13256 1.227674 GGAGGCCCTAGTGCGATTG 60.228 63.158 0.00 0.00 0.00 2.67
3286 13257 1.056700 ATGGAGGCCCTAGTGCGATT 61.057 55.000 0.00 0.00 0.00 3.34
3287 13258 0.178932 TATGGAGGCCCTAGTGCGAT 60.179 55.000 0.00 0.00 0.00 4.58
3288 13259 0.397957 TTATGGAGGCCCTAGTGCGA 60.398 55.000 0.00 0.00 0.00 5.10
3289 13260 0.687354 ATTATGGAGGCCCTAGTGCG 59.313 55.000 0.00 0.00 0.00 5.34
3290 13261 2.907042 AGTATTATGGAGGCCCTAGTGC 59.093 50.000 0.00 0.00 0.00 4.40
3291 13262 4.712337 CCTAGTATTATGGAGGCCCTAGTG 59.288 50.000 0.00 0.00 0.00 2.74
3292 13263 4.360446 ACCTAGTATTATGGAGGCCCTAGT 59.640 45.833 0.00 0.00 31.81 2.57
3293 13264 4.949121 ACCTAGTATTATGGAGGCCCTAG 58.051 47.826 0.00 0.00 31.81 3.02
3294 13265 4.264713 GGACCTAGTATTATGGAGGCCCTA 60.265 50.000 0.00 0.00 29.39 3.53
3295 13266 3.504343 GGACCTAGTATTATGGAGGCCCT 60.504 52.174 0.00 0.00 29.39 5.19
3296 13267 2.838813 GGACCTAGTATTATGGAGGCCC 59.161 54.545 0.00 0.00 31.81 5.80
3297 13268 2.496470 CGGACCTAGTATTATGGAGGCC 59.504 54.545 0.00 0.00 31.81 5.19
3298 13269 2.496470 CCGGACCTAGTATTATGGAGGC 59.504 54.545 0.00 0.00 31.81 4.70
3299 13270 3.762823 GACCGGACCTAGTATTATGGAGG 59.237 52.174 9.46 0.00 35.05 4.30
3300 13271 3.762823 GGACCGGACCTAGTATTATGGAG 59.237 52.174 16.26 0.00 0.00 3.86
3301 13272 3.501019 GGGACCGGACCTAGTATTATGGA 60.501 52.174 22.36 0.00 0.00 3.41
3302 13273 2.830321 GGGACCGGACCTAGTATTATGG 59.170 54.545 22.36 0.00 0.00 2.74
3303 13274 2.490903 CGGGACCGGACCTAGTATTATG 59.509 54.545 22.36 0.00 35.56 1.90
3304 13275 2.376518 TCGGGACCGGACCTAGTATTAT 59.623 50.000 22.36 0.00 40.25 1.28
3305 13276 1.774254 TCGGGACCGGACCTAGTATTA 59.226 52.381 22.36 0.00 40.25 0.98
3306 13277 0.552848 TCGGGACCGGACCTAGTATT 59.447 55.000 22.36 0.00 40.25 1.89
3307 13278 0.776176 ATCGGGACCGGACCTAGTAT 59.224 55.000 22.36 8.22 40.25 2.12
3308 13279 0.552848 AATCGGGACCGGACCTAGTA 59.447 55.000 22.36 6.27 40.25 1.82
3309 13280 1.041447 CAATCGGGACCGGACCTAGT 61.041 60.000 22.36 7.86 40.25 2.57
3310 13281 1.041447 ACAATCGGGACCGGACCTAG 61.041 60.000 22.36 16.18 40.25 3.02
3311 13282 0.258484 TACAATCGGGACCGGACCTA 59.742 55.000 22.36 11.54 40.25 3.08
3312 13283 0.398098 ATACAATCGGGACCGGACCT 60.398 55.000 22.36 4.15 40.25 3.85
3313 13284 0.249741 CATACAATCGGGACCGGACC 60.250 60.000 15.20 15.20 40.25 4.46
3314 13285 0.878961 GCATACAATCGGGACCGGAC 60.879 60.000 9.46 0.00 40.25 4.79
3315 13286 1.331399 TGCATACAATCGGGACCGGA 61.331 55.000 9.46 3.95 40.25 5.14
3316 13287 0.250295 ATGCATACAATCGGGACCGG 60.250 55.000 11.27 0.00 40.25 5.28
3317 13288 1.593196 AATGCATACAATCGGGACCG 58.407 50.000 0.00 3.96 41.35 4.79
3318 13289 2.687935 ACAAATGCATACAATCGGGACC 59.312 45.455 0.00 0.00 0.00 4.46
3319 13290 4.370364 AACAAATGCATACAATCGGGAC 57.630 40.909 0.00 0.00 0.00 4.46
3320 13291 4.704540 AGAAACAAATGCATACAATCGGGA 59.295 37.500 0.00 0.00 0.00 5.14
3321 13292 4.799949 CAGAAACAAATGCATACAATCGGG 59.200 41.667 0.00 0.00 0.00 5.14
3322 13293 5.639757 TCAGAAACAAATGCATACAATCGG 58.360 37.500 0.00 0.00 0.00 4.18
3323 13294 8.337532 TCTATCAGAAACAAATGCATACAATCG 58.662 33.333 0.00 0.00 0.00 3.34
3337 13308 7.888021 TGGAGGCTTAAAATTCTATCAGAAACA 59.112 33.333 0.00 0.00 37.82 2.83
3348 13319 4.762251 ACACAGACTGGAGGCTTAAAATTC 59.238 41.667 7.51 0.00 0.00 2.17
3352 13323 2.703536 TGACACAGACTGGAGGCTTAAA 59.296 45.455 7.51 0.00 0.00 1.52
3355 13326 0.683973 CTGACACAGACTGGAGGCTT 59.316 55.000 7.51 0.00 32.44 4.35
3357 13328 0.394565 AACTGACACAGACTGGAGGC 59.605 55.000 7.51 1.54 35.18 4.70
3370 13344 4.985409 CCTGTACTTCTCTTGTGAACTGAC 59.015 45.833 0.00 0.00 0.00 3.51
3371 13345 4.039245 CCCTGTACTTCTCTTGTGAACTGA 59.961 45.833 0.00 0.00 0.00 3.41
3372 13346 4.310769 CCCTGTACTTCTCTTGTGAACTG 58.689 47.826 0.00 0.00 0.00 3.16
3373 13347 3.244249 GCCCTGTACTTCTCTTGTGAACT 60.244 47.826 0.00 0.00 0.00 3.01
3374 13348 3.067833 GCCCTGTACTTCTCTTGTGAAC 58.932 50.000 0.00 0.00 0.00 3.18
3375 13349 2.703536 TGCCCTGTACTTCTCTTGTGAA 59.296 45.455 0.00 0.00 0.00 3.18
3376 13350 2.325484 TGCCCTGTACTTCTCTTGTGA 58.675 47.619 0.00 0.00 0.00 3.58
3377 13351 2.839486 TGCCCTGTACTTCTCTTGTG 57.161 50.000 0.00 0.00 0.00 3.33
3378 13352 2.616510 GCATGCCCTGTACTTCTCTTGT 60.617 50.000 6.36 0.00 0.00 3.16
3379 13353 2.012673 GCATGCCCTGTACTTCTCTTG 58.987 52.381 6.36 0.00 0.00 3.02
3380 13354 1.912043 AGCATGCCCTGTACTTCTCTT 59.088 47.619 15.66 0.00 0.00 2.85
3381 13355 1.484240 GAGCATGCCCTGTACTTCTCT 59.516 52.381 15.66 0.00 0.00 3.10
3382 13356 1.208052 TGAGCATGCCCTGTACTTCTC 59.792 52.381 15.66 1.36 0.00 2.87
3383 13357 1.065854 GTGAGCATGCCCTGTACTTCT 60.066 52.381 15.66 0.00 0.00 2.85
3384 13358 1.373570 GTGAGCATGCCCTGTACTTC 58.626 55.000 15.66 2.97 0.00 3.01
3385 13359 0.035056 GGTGAGCATGCCCTGTACTT 60.035 55.000 15.66 0.00 0.00 2.24
3386 13360 1.604378 GGTGAGCATGCCCTGTACT 59.396 57.895 15.66 0.00 0.00 2.73
3387 13361 1.815421 CGGTGAGCATGCCCTGTAC 60.815 63.158 15.66 6.46 0.00 2.90
3388 13362 1.836999 AACGGTGAGCATGCCCTGTA 61.837 55.000 15.66 0.00 0.00 2.74
3389 13363 3.196207 AACGGTGAGCATGCCCTGT 62.196 57.895 15.66 11.06 0.00 4.00
3390 13364 2.360350 AACGGTGAGCATGCCCTG 60.360 61.111 15.66 10.38 0.00 4.45
3391 13365 2.360350 CAACGGTGAGCATGCCCT 60.360 61.111 15.66 0.00 0.00 5.19
3392 13366 3.443045 CCAACGGTGAGCATGCCC 61.443 66.667 15.66 7.82 0.00 5.36
3403 13400 3.425578 TTTTTGTGCACACCAACGG 57.574 47.368 21.56 0.00 0.00 4.44
3420 13417 2.876550 GTTTCTTGGCGAGGTACACTTT 59.123 45.455 0.97 0.00 0.00 2.66
3425 13422 0.796927 GCTGTTTCTTGGCGAGGTAC 59.203 55.000 0.97 1.34 0.00 3.34
3481 13479 4.123497 TGACAGCCTCATGTATACACAC 57.877 45.455 7.96 0.00 37.54 3.82
3482 13480 4.020662 TGTTGACAGCCTCATGTATACACA 60.021 41.667 7.96 0.00 39.52 3.72
3507 13505 8.319057 ACTTCCCTTTTTGGAATTTAGAAACT 57.681 30.769 0.00 0.00 43.29 2.66
3583 13604 7.444299 ACACCATTGATGCTTTTTCTTGTATT 58.556 30.769 0.00 0.00 0.00 1.89
3584 13605 6.996509 ACACCATTGATGCTTTTTCTTGTAT 58.003 32.000 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.