Multiple sequence alignment - TraesCS4D01G041500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G041500 chr4D 100.000 5724 0 0 1 5724 19444893 19439170 0.000000e+00 10571
1 TraesCS4D01G041500 chr4D 91.346 104 6 2 2241 2342 420142737 420142635 7.730000e-29 139
2 TraesCS4D01G041500 chr4B 93.870 2088 88 18 3242 5297 31885284 31883205 0.000000e+00 3110
3 TraesCS4D01G041500 chr4B 89.112 2287 94 52 33 2249 31888352 31886151 0.000000e+00 2700
4 TraesCS4D01G041500 chr4B 91.855 884 59 5 2330 3210 31886153 31885280 0.000000e+00 1221
5 TraesCS4D01G041500 chr4B 88.141 312 15 18 5417 5724 31882907 31882614 9.130000e-93 351
6 TraesCS4D01G041500 chr4A 93.214 2063 110 15 3242 5289 581469751 581471798 0.000000e+00 3007
7 TraesCS4D01G041500 chr4A 85.614 2127 135 73 6 2041 581466516 581468562 0.000000e+00 2074
8 TraesCS4D01G041500 chr4A 90.858 897 62 8 2330 3210 581468863 581469755 0.000000e+00 1184
9 TraesCS4D01G041500 chr4A 90.654 321 16 5 1932 2249 581468556 581468865 1.150000e-111 414
10 TraesCS4D01G041500 chr4A 77.020 396 24 27 5360 5724 581471799 581472158 1.280000e-36 165
11 TraesCS4D01G041500 chr5D 89.341 516 44 7 2331 2839 214066692 214067203 6.250000e-179 638
12 TraesCS4D01G041500 chr5D 90.816 490 16 8 1755 2242 214066225 214066687 3.760000e-176 628
13 TraesCS4D01G041500 chr5D 90.490 347 27 3 2496 2839 367507552 367507895 2.430000e-123 453
14 TraesCS4D01G041500 chr5D 89.971 349 27 4 2496 2839 437147238 437146893 1.460000e-120 444
15 TraesCS4D01G041500 chr5D 90.085 353 11 5 1805 2155 367507335 367507665 2.450000e-118 436
16 TraesCS4D01G041500 chr5D 89.518 353 13 5 1805 2155 437147455 437147125 5.300000e-115 425
17 TraesCS4D01G041500 chr5D 89.408 321 29 4 2331 2647 80898392 80898073 3.210000e-107 399
18 TraesCS4D01G041500 chr5A 88.085 470 45 7 2376 2839 452800727 452800263 1.080000e-151 547
19 TraesCS4D01G041500 chr5A 90.031 321 27 4 2331 2647 308142760 308143079 1.480000e-110 411
20 TraesCS4D01G041500 chr5A 96.591 88 3 0 2244 2331 526875313 526875400 4.620000e-31 147
21 TraesCS4D01G041500 chr6D 87.919 447 22 11 1805 2249 419596129 419595713 1.110000e-136 497
22 TraesCS4D01G041500 chr6D 87.696 447 23 9 1805 2249 427609672 427609256 5.150000e-135 492
23 TraesCS4D01G041500 chr6D 87.696 447 23 9 1805 2249 427934033 427933617 5.150000e-135 492
24 TraesCS4D01G041500 chr6D 94.624 93 4 1 2247 2339 283795854 283795763 5.980000e-30 143
25 TraesCS4D01G041500 chr2D 87.248 447 25 9 1805 2249 499025157 499024741 1.120000e-131 481
26 TraesCS4D01G041500 chr2D 90.258 349 26 4 2496 2839 181604702 181605047 3.150000e-122 449
27 TraesCS4D01G041500 chr2D 89.518 353 13 5 1805 2155 181604485 181604815 5.300000e-115 425
28 TraesCS4D01G041500 chrUn 90.490 347 27 3 2496 2839 402939992 402940335 2.430000e-123 453
29 TraesCS4D01G041500 chrUn 90.085 353 11 5 1805 2155 402939775 402940105 2.450000e-118 436
30 TraesCS4D01G041500 chrUn 97.521 121 3 0 2035 2155 361665529 361665649 2.090000e-49 207
31 TraesCS4D01G041500 chr7D 90.490 347 27 3 2496 2839 589202907 589202564 2.430000e-123 453
32 TraesCS4D01G041500 chr7D 90.085 353 11 5 1805 2155 589203124 589202794 2.450000e-118 436
33 TraesCS4D01G041500 chr7D 95.506 89 4 0 2244 2332 470204788 470204876 5.980000e-30 143
34 TraesCS4D01G041500 chr1D 90.202 347 28 2 2496 2839 435734808 435734465 1.130000e-121 448
35 TraesCS4D01G041500 chr1D 89.802 353 12 5 1805 2155 435735025 435734695 1.140000e-116 431
36 TraesCS4D01G041500 chr1D 97.521 121 3 0 2035 2155 460290694 460290814 2.090000e-49 207
37 TraesCS4D01G041500 chr6A 90.654 321 25 4 2331 2647 121648517 121648198 6.860000e-114 422
38 TraesCS4D01G041500 chr3A 90.031 321 27 4 2331 2647 399610561 399610242 1.480000e-110 411
39 TraesCS4D01G041500 chr3A 89.408 321 29 4 2331 2647 403984049 403983730 3.210000e-107 399
40 TraesCS4D01G041500 chr3A 94.444 90 5 0 2243 2332 492755874 492755963 7.730000e-29 139
41 TraesCS4D01G041500 chr6B 95.556 90 4 0 2243 2332 705518237 705518148 1.660000e-30 145
42 TraesCS4D01G041500 chr3B 93.684 95 4 2 2247 2341 10622597 10622505 2.150000e-29 141
43 TraesCS4D01G041500 chr2B 90.566 106 9 1 2239 2343 677953157 677953262 7.730000e-29 139
44 TraesCS4D01G041500 chr2A 88.596 114 7 6 2219 2331 73546228 73546120 3.600000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G041500 chr4D 19439170 19444893 5723 True 10571.0 10571 100.0000 1 5724 1 chr4D.!!$R1 5723
1 TraesCS4D01G041500 chr4B 31882614 31888352 5738 True 1845.5 3110 90.7445 33 5724 4 chr4B.!!$R1 5691
2 TraesCS4D01G041500 chr4A 581466516 581472158 5642 False 1368.8 3007 87.4720 6 5724 5 chr4A.!!$F1 5718
3 TraesCS4D01G041500 chr5D 214066225 214067203 978 False 633.0 638 90.0785 1755 2839 2 chr5D.!!$F1 1084
4 TraesCS4D01G041500 chr5D 367507335 367507895 560 False 444.5 453 90.2875 1805 2839 2 chr5D.!!$F2 1034
5 TraesCS4D01G041500 chr5D 437146893 437147455 562 True 434.5 444 89.7445 1805 2839 2 chr5D.!!$R2 1034
6 TraesCS4D01G041500 chr2D 181604485 181605047 562 False 437.0 449 89.8880 1805 2839 2 chr2D.!!$F1 1034
7 TraesCS4D01G041500 chrUn 402939775 402940335 560 False 444.5 453 90.2875 1805 2839 2 chrUn.!!$F2 1034
8 TraesCS4D01G041500 chr7D 589202564 589203124 560 True 444.5 453 90.2875 1805 2839 2 chr7D.!!$R1 1034
9 TraesCS4D01G041500 chr1D 435734465 435735025 560 True 439.5 448 90.0020 1805 2839 2 chr1D.!!$R1 1034

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
778 848 0.035056 CTCCATGAAACCGGCTCCTT 60.035 55.0 0.00 0.0 0.0 3.36 F
779 849 0.035439 TCCATGAAACCGGCTCCTTC 60.035 55.0 0.00 0.0 0.0 3.46 F
780 850 0.035056 CCATGAAACCGGCTCCTTCT 60.035 55.0 0.00 0.0 0.0 2.85 F
1771 1900 0.250727 TTTGCCGGAGAGGAAGGTTG 60.251 55.0 5.05 0.0 45.0 3.77 F
3227 4244 0.037232 GGTGTTCTTGAGTCTCCCGG 60.037 60.0 0.00 0.0 0.0 5.73 F
3235 4252 0.599558 TGAGTCTCCCGGTGTTAACG 59.400 55.0 0.00 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2573 3574 0.983467 TGCTATCAAGGACACTGCCA 59.017 50.000 0.00 0.0 0.00 4.92 R
2647 3650 3.402628 ACTATCAGCACGGAACAACTT 57.597 42.857 0.00 0.0 0.00 2.66 R
2861 3878 4.373156 ACCAGCACCTCTTCAGTATTTT 57.627 40.909 0.00 0.0 0.00 1.82 R
3236 4253 0.250553 TTTACCTTGGTCTGCGGTGG 60.251 55.000 0.00 0.0 32.36 4.61 R
4518 5547 0.445436 CAAGCGCTCATGGACTTGAC 59.555 55.000 12.06 0.0 41.59 3.18 R
5299 6358 0.532417 TAAACGACACAACGTGGGGG 60.532 55.000 0.00 0.0 45.83 5.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.221840 CCGTGCTAGCAGGTCCAAT 59.778 57.895 29.77 0.00 0.00 3.16
51 52 2.710902 GCCGTGCCATTTTCTCCCC 61.711 63.158 0.00 0.00 0.00 4.81
114 120 4.385405 GACTGACGGCCAGCAGCT 62.385 66.667 18.89 8.62 46.81 4.24
144 166 2.045340 CCGACCGGGAAAAGCCAT 60.045 61.111 6.32 0.00 38.47 4.40
148 170 2.045340 CCGGGAAAAGCCATCCGT 60.045 61.111 0.00 0.00 40.78 4.69
173 207 3.005554 CACCAGAATCTACCACTGCTTG 58.994 50.000 0.00 0.00 0.00 4.01
175 209 2.355513 CCAGAATCTACCACTGCTTGCT 60.356 50.000 0.00 0.00 0.00 3.91
251 292 3.610791 CTGCGACGCGGTCAGAGAA 62.611 63.158 20.56 0.00 32.09 2.87
344 393 1.805945 CACCTCCGCTCGTTGCTAC 60.806 63.158 2.29 0.00 40.11 3.58
345 394 2.273179 ACCTCCGCTCGTTGCTACA 61.273 57.895 0.00 0.00 40.11 2.74
347 396 1.805945 CTCCGCTCGTTGCTACACC 60.806 63.158 0.00 0.00 40.11 4.16
380 429 3.412237 AATTACGGCCATTATACGCCT 57.588 42.857 2.24 0.00 43.38 5.52
406 455 1.440145 GCGAGGATTTACCAGCAGCC 61.440 60.000 0.00 0.00 41.66 4.85
407 456 0.107703 CGAGGATTTACCAGCAGCCA 60.108 55.000 0.00 0.00 42.04 4.75
408 457 1.673168 GAGGATTTACCAGCAGCCAG 58.327 55.000 0.00 0.00 42.04 4.85
409 458 0.394899 AGGATTTACCAGCAGCCAGC 60.395 55.000 0.00 0.00 42.04 4.85
435 484 3.490759 GCATCGCCACCACTGACG 61.491 66.667 0.00 0.00 0.00 4.35
436 485 2.815211 CATCGCCACCACTGACGG 60.815 66.667 0.00 0.00 0.00 4.79
535 593 2.106684 GTCCTTTCCACCAAACTCCTCT 59.893 50.000 0.00 0.00 0.00 3.69
541 599 1.068121 CACCAAACTCCTCTCCCCTT 58.932 55.000 0.00 0.00 0.00 3.95
543 601 0.250513 CCAAACTCCTCTCCCCTTCG 59.749 60.000 0.00 0.00 0.00 3.79
547 605 3.684628 TCCTCTCCCCTTCGCCCT 61.685 66.667 0.00 0.00 0.00 5.19
556 614 4.806339 CTTCGCCCTCCCCCTCCT 62.806 72.222 0.00 0.00 0.00 3.69
715 785 0.321346 TCGCAATCTGCTGGAGTTGA 59.679 50.000 12.84 0.00 42.25 3.18
716 786 1.065926 TCGCAATCTGCTGGAGTTGAT 60.066 47.619 12.84 0.00 42.25 2.57
717 787 1.063616 CGCAATCTGCTGGAGTTGATG 59.936 52.381 12.84 3.48 42.25 3.07
718 788 2.362736 GCAATCTGCTGGAGTTGATGA 58.637 47.619 12.84 0.00 40.96 2.92
778 848 0.035056 CTCCATGAAACCGGCTCCTT 60.035 55.000 0.00 0.00 0.00 3.36
779 849 0.035439 TCCATGAAACCGGCTCCTTC 60.035 55.000 0.00 0.00 0.00 3.46
780 850 0.035056 CCATGAAACCGGCTCCTTCT 60.035 55.000 0.00 0.00 0.00 2.85
781 851 1.614317 CCATGAAACCGGCTCCTTCTT 60.614 52.381 0.00 0.00 0.00 2.52
782 852 1.740025 CATGAAACCGGCTCCTTCTTC 59.260 52.381 0.00 0.00 0.00 2.87
1211 1307 2.876645 CGTCGACAGCCTCTTCGC 60.877 66.667 17.16 0.00 35.15 4.70
1213 1309 3.760035 TCGACAGCCTCTTCGCCC 61.760 66.667 0.00 0.00 35.15 6.13
1733 1838 0.471780 TCTGAGCCCAGTGGTGAAGA 60.472 55.000 8.74 2.81 41.16 2.87
1735 1840 0.471780 TGAGCCCAGTGGTGAAGAGA 60.472 55.000 8.74 0.00 0.00 3.10
1739 1844 1.352083 CCCAGTGGTGAAGAGAAGGA 58.648 55.000 8.74 0.00 0.00 3.36
1741 1846 2.307098 CCCAGTGGTGAAGAGAAGGAAT 59.693 50.000 8.74 0.00 0.00 3.01
1745 1850 4.020751 CAGTGGTGAAGAGAAGGAATCAGA 60.021 45.833 0.00 0.00 0.00 3.27
1753 1858 7.716123 GTGAAGAGAAGGAATCAGATGATCATT 59.284 37.037 10.14 0.00 32.75 2.57
1771 1900 0.250727 TTTGCCGGAGAGGAAGGTTG 60.251 55.000 5.05 0.00 45.00 3.77
1898 2052 4.201851 CCACGCTATGGCTGCATATTTATC 60.202 45.833 0.50 0.00 43.24 1.75
1952 2209 5.638657 TGTTTGTTATGCCAATCATTTCAGC 59.361 36.000 0.00 0.00 36.63 4.26
2021 2278 9.323985 ACTATTCTTGAGATGATCTTTAAGTGC 57.676 33.333 15.38 0.00 0.00 4.40
2022 2279 9.545105 CTATTCTTGAGATGATCTTTAAGTGCT 57.455 33.333 15.38 7.92 0.00 4.40
2023 2280 7.840342 TTCTTGAGATGATCTTTAAGTGCTC 57.160 36.000 15.38 0.00 0.00 4.26
2024 2281 6.344500 TCTTGAGATGATCTTTAAGTGCTCC 58.656 40.000 15.38 0.00 0.00 4.70
2026 2283 7.343057 TCTTGAGATGATCTTTAAGTGCTCCTA 59.657 37.037 15.38 0.00 0.00 2.94
2027 2284 6.810911 TGAGATGATCTTTAAGTGCTCCTAC 58.189 40.000 0.00 0.00 0.00 3.18
2028 2285 6.381133 TGAGATGATCTTTAAGTGCTCCTACA 59.619 38.462 0.00 0.00 0.00 2.74
2029 2286 7.093333 TGAGATGATCTTTAAGTGCTCCTACAA 60.093 37.037 0.00 0.00 0.00 2.41
2030 2287 7.624549 AGATGATCTTTAAGTGCTCCTACAAA 58.375 34.615 0.00 0.00 0.00 2.83
2031 2288 7.768120 AGATGATCTTTAAGTGCTCCTACAAAG 59.232 37.037 0.00 0.00 31.33 2.77
2032 2289 7.004555 TGATCTTTAAGTGCTCCTACAAAGA 57.995 36.000 12.04 12.04 38.09 2.52
2033 2290 6.874134 TGATCTTTAAGTGCTCCTACAAAGAC 59.126 38.462 11.96 8.98 37.26 3.01
2166 3165 6.814954 ATGGACCTCTTATACACATGTTCT 57.185 37.500 0.00 0.00 0.00 3.01
2249 3248 7.455641 ACATGCTCTCGCTATAGTAATTACT 57.544 36.000 21.35 21.35 37.40 2.24
2250 3249 7.531716 ACATGCTCTCGCTATAGTAATTACTC 58.468 38.462 21.25 6.68 36.00 2.59
2251 3250 6.497785 TGCTCTCGCTATAGTAATTACTCC 57.502 41.667 21.25 8.10 36.00 3.85
2252 3251 5.415077 TGCTCTCGCTATAGTAATTACTCCC 59.585 44.000 21.25 7.78 36.00 4.30
2253 3252 5.648960 GCTCTCGCTATAGTAATTACTCCCT 59.351 44.000 21.25 10.27 37.73 4.20
2254 3253 6.183360 GCTCTCGCTATAGTAATTACTCCCTC 60.183 46.154 21.25 9.05 37.73 4.30
2255 3254 6.179040 TCTCGCTATAGTAATTACTCCCTCC 58.821 44.000 21.25 7.15 37.73 4.30
2256 3255 4.940046 TCGCTATAGTAATTACTCCCTCCG 59.060 45.833 21.25 16.95 37.73 4.63
2257 3256 4.699257 CGCTATAGTAATTACTCCCTCCGT 59.301 45.833 21.25 0.00 37.73 4.69
2258 3257 5.877012 CGCTATAGTAATTACTCCCTCCGTA 59.123 44.000 21.25 2.24 37.73 4.02
2259 3258 6.372659 CGCTATAGTAATTACTCCCTCCGTAA 59.627 42.308 21.25 1.51 37.73 3.18
2260 3259 7.094634 CGCTATAGTAATTACTCCCTCCGTAAA 60.095 40.741 21.25 0.77 37.73 2.01
2261 3260 8.242739 GCTATAGTAATTACTCCCTCCGTAAAG 58.757 40.741 21.25 6.75 37.73 1.85
2262 3261 9.512588 CTATAGTAATTACTCCCTCCGTAAAGA 57.487 37.037 21.25 0.04 37.73 2.52
2263 3262 8.773033 ATAGTAATTACTCCCTCCGTAAAGAA 57.227 34.615 21.25 0.00 37.73 2.52
2264 3263 7.486407 AGTAATTACTCCCTCCGTAAAGAAA 57.514 36.000 12.50 0.00 31.36 2.52
2265 3264 8.087303 AGTAATTACTCCCTCCGTAAAGAAAT 57.913 34.615 12.50 0.00 31.36 2.17
2266 3265 9.205513 AGTAATTACTCCCTCCGTAAAGAAATA 57.794 33.333 12.50 0.00 31.36 1.40
2267 3266 9.993454 GTAATTACTCCCTCCGTAAAGAAATAT 57.007 33.333 8.41 0.00 31.36 1.28
2271 3270 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
2272 3271 8.315220 ACTCCCTCCGTAAAGAAATATAAGAA 57.685 34.615 0.00 0.00 0.00 2.52
2273 3272 8.935741 ACTCCCTCCGTAAAGAAATATAAGAAT 58.064 33.333 0.00 0.00 0.00 2.40
2274 3273 9.209175 CTCCCTCCGTAAAGAAATATAAGAATG 57.791 37.037 0.00 0.00 0.00 2.67
2275 3274 8.711170 TCCCTCCGTAAAGAAATATAAGAATGT 58.289 33.333 0.00 0.00 0.00 2.71
2276 3275 9.338622 CCCTCCGTAAAGAAATATAAGAATGTT 57.661 33.333 0.00 0.00 0.00 2.71
2317 3316 9.601217 AGTGATCTAAACGCTCTTATATTTGTT 57.399 29.630 0.00 0.00 0.00 2.83
2325 3324 7.772332 ACGCTCTTATATTTGTTTACAGAGG 57.228 36.000 0.00 0.00 0.00 3.69
2326 3325 6.761714 ACGCTCTTATATTTGTTTACAGAGGG 59.238 38.462 8.36 8.36 38.95 4.30
2327 3326 6.984474 CGCTCTTATATTTGTTTACAGAGGGA 59.016 38.462 4.76 0.00 36.40 4.20
2328 3327 7.169982 CGCTCTTATATTTGTTTACAGAGGGAG 59.830 40.741 4.76 0.00 36.40 4.30
2329 3328 7.988028 GCTCTTATATTTGTTTACAGAGGGAGT 59.012 37.037 0.00 0.00 0.00 3.85
2367 3367 4.006989 TGCTCCACGCACATTTATTTACT 58.993 39.130 0.00 0.00 45.47 2.24
2373 3373 8.133754 TCCACGCACATTTATTTACTGTATAC 57.866 34.615 0.00 0.00 0.00 1.47
2414 3414 9.278978 TGTCATTTTAGCAAAGTACAATAGACA 57.721 29.630 0.00 0.00 0.00 3.41
2472 3472 4.597507 TGGAGATGGTCTTTAAGTGTTCCT 59.402 41.667 0.00 0.00 0.00 3.36
2501 3502 8.731605 ACAGACTTCTTATTTTAGCTTTTAGCC 58.268 33.333 0.00 0.00 43.77 3.93
2508 3509 7.719633 TCTTATTTTAGCTTTTAGCCGATCCAT 59.280 33.333 0.00 0.00 43.77 3.41
2592 3593 0.983467 TGGCAGTGTCCTTGATAGCA 59.017 50.000 0.00 0.00 0.00 3.49
2622 3623 6.335777 TGGACGTCTTAACTAAATAGAAGCC 58.664 40.000 16.46 0.00 0.00 4.35
2647 3650 7.824289 CCATTTCTTGTCATCTACAGTCCTTTA 59.176 37.037 0.00 0.00 39.87 1.85
2669 3681 3.326747 AGTTGTTCCGTGCTGATAGTTC 58.673 45.455 0.00 0.00 0.00 3.01
2820 3837 4.886496 TGAATTGTTTTCCATGCCATCA 57.114 36.364 0.00 0.00 0.00 3.07
2861 3878 4.933505 TTGTTGTTGGCAAATCTGATGA 57.066 36.364 0.00 0.00 36.22 2.92
2923 3940 0.108662 TGAGTGTGACGCTATGCCAG 60.109 55.000 0.00 0.00 0.00 4.85
2943 3960 1.379044 GGAAGGTGGGCCACATGAG 60.379 63.158 35.69 0.00 35.86 2.90
2945 3962 0.251341 GAAGGTGGGCCACATGAGTT 60.251 55.000 35.69 20.32 35.86 3.01
2946 3963 0.540365 AAGGTGGGCCACATGAGTTG 60.540 55.000 35.69 0.00 35.86 3.16
3075 4092 9.171877 GAATGTGAAGAGGAGAAAATATCACTT 57.828 33.333 0.00 0.00 37.27 3.16
3078 4095 6.597280 GTGAAGAGGAGAAAATATCACTTGCT 59.403 38.462 0.00 0.00 34.41 3.91
3095 4112 5.684626 CACTTGCTGAGTTGAAACAAGAATC 59.315 40.000 7.95 0.00 40.06 2.52
3113 4130 3.426568 GGACTCTGCGGCACTTGC 61.427 66.667 0.00 0.00 41.14 4.01
3119 4136 0.819259 TCTGCGGCACTTGCTTCTTT 60.819 50.000 0.00 0.00 41.70 2.52
3132 4149 9.903977 GCACTTGCTTCTTTGGAACAAGTTACA 62.904 40.741 16.16 0.00 43.04 2.41
3152 4169 7.439655 AGTTACAGAGATTTCAAGTGAGAACAC 59.560 37.037 0.00 0.00 46.24 3.32
3189 4206 2.322212 GCCTGAGCTGATGCATCTG 58.678 57.895 26.32 25.49 42.74 2.90
3210 4227 1.075374 TCCACTTTTATGGCAGCAGGT 59.925 47.619 0.00 0.00 39.85 4.00
3212 4229 1.888512 CACTTTTATGGCAGCAGGTGT 59.111 47.619 0.66 0.00 0.00 4.16
3213 4230 2.297033 CACTTTTATGGCAGCAGGTGTT 59.703 45.455 0.66 0.00 0.00 3.32
3214 4231 2.558359 ACTTTTATGGCAGCAGGTGTTC 59.442 45.455 0.66 0.00 0.00 3.18
3215 4232 2.584835 TTTATGGCAGCAGGTGTTCT 57.415 45.000 0.66 0.00 0.00 3.01
3216 4233 2.584835 TTATGGCAGCAGGTGTTCTT 57.415 45.000 0.66 0.00 0.00 2.52
3217 4234 1.825090 TATGGCAGCAGGTGTTCTTG 58.175 50.000 0.66 0.00 0.00 3.02
3218 4235 0.111061 ATGGCAGCAGGTGTTCTTGA 59.889 50.000 0.66 0.00 0.00 3.02
3219 4236 0.535780 TGGCAGCAGGTGTTCTTGAG 60.536 55.000 0.66 0.00 0.00 3.02
3220 4237 0.536006 GGCAGCAGGTGTTCTTGAGT 60.536 55.000 0.66 0.00 0.00 3.41
3221 4238 0.871057 GCAGCAGGTGTTCTTGAGTC 59.129 55.000 0.66 0.00 0.00 3.36
3222 4239 1.542108 GCAGCAGGTGTTCTTGAGTCT 60.542 52.381 0.66 0.00 0.00 3.24
3223 4240 2.411904 CAGCAGGTGTTCTTGAGTCTC 58.588 52.381 0.00 0.00 0.00 3.36
3224 4241 1.346068 AGCAGGTGTTCTTGAGTCTCC 59.654 52.381 0.00 0.00 0.00 3.71
3225 4242 1.609320 GCAGGTGTTCTTGAGTCTCCC 60.609 57.143 0.00 0.00 0.00 4.30
3226 4243 0.969894 AGGTGTTCTTGAGTCTCCCG 59.030 55.000 0.00 0.00 0.00 5.14
3227 4244 0.037232 GGTGTTCTTGAGTCTCCCGG 60.037 60.000 0.00 0.00 0.00 5.73
3228 4245 0.680061 GTGTTCTTGAGTCTCCCGGT 59.320 55.000 0.00 0.00 0.00 5.28
3229 4246 0.679505 TGTTCTTGAGTCTCCCGGTG 59.320 55.000 0.00 0.00 0.00 4.94
3230 4247 0.680061 GTTCTTGAGTCTCCCGGTGT 59.320 55.000 0.00 0.00 0.00 4.16
3231 4248 1.070289 GTTCTTGAGTCTCCCGGTGTT 59.930 52.381 0.00 0.00 0.00 3.32
3232 4249 2.297698 TCTTGAGTCTCCCGGTGTTA 57.702 50.000 0.00 0.00 0.00 2.41
3233 4250 2.600790 TCTTGAGTCTCCCGGTGTTAA 58.399 47.619 0.00 0.00 0.00 2.01
3234 4251 2.298163 TCTTGAGTCTCCCGGTGTTAAC 59.702 50.000 0.00 0.00 0.00 2.01
3235 4252 0.599558 TGAGTCTCCCGGTGTTAACG 59.400 55.000 0.00 0.00 0.00 3.18
3236 4253 0.735287 GAGTCTCCCGGTGTTAACGC 60.735 60.000 10.77 10.77 0.00 4.84
3237 4254 1.739196 GTCTCCCGGTGTTAACGCC 60.739 63.158 25.42 25.42 42.91 5.68
3238 4255 2.208619 TCTCCCGGTGTTAACGCCA 61.209 57.895 31.85 15.87 46.55 5.69
3239 4256 2.030862 TCCCGGTGTTAACGCCAC 59.969 61.111 31.85 11.88 46.55 5.01
3240 4257 3.051479 CCCGGTGTTAACGCCACC 61.051 66.667 31.85 18.64 46.55 4.61
3243 4260 2.973600 GGTGTTAACGCCACCGCA 60.974 61.111 29.19 0.00 45.55 5.69
3244 4261 2.554272 GTGTTAACGCCACCGCAG 59.446 61.111 7.99 0.00 38.22 5.18
3245 4262 1.957186 GTGTTAACGCCACCGCAGA 60.957 57.895 7.99 0.00 38.22 4.26
3246 4263 1.957186 TGTTAACGCCACCGCAGAC 60.957 57.895 0.26 0.00 38.22 3.51
3247 4264 2.357760 TTAACGCCACCGCAGACC 60.358 61.111 0.00 0.00 38.22 3.85
3264 4281 5.619086 CGCAGACCAAGGTAAAATGTTAAGG 60.619 44.000 0.00 0.00 0.00 2.69
3312 4341 4.477302 GCTGTTTGCTGCATTTTGATTT 57.523 36.364 1.84 0.00 39.07 2.17
3333 4362 8.952278 TGATTTACTTGTTTAATACGATTGGCT 58.048 29.630 0.00 0.00 0.00 4.75
3336 4365 8.774890 TTACTTGTTTAATACGATTGGCTACA 57.225 30.769 0.00 0.00 0.00 2.74
3340 4369 9.567848 CTTGTTTAATACGATTGGCTACATTTT 57.432 29.630 0.00 0.00 0.00 1.82
3348 4377 9.730420 ATACGATTGGCTACATTTTAAACAATC 57.270 29.630 12.19 12.19 39.31 2.67
3445 4474 6.131264 TGATGGGCATTCAATAAGTTCAGAT 58.869 36.000 0.00 0.00 0.00 2.90
3832 4861 2.223618 GGAAGAGCAGTCGGAGTATGAC 60.224 54.545 0.00 0.00 36.60 3.06
3841 4870 1.134367 TCGGAGTATGACCAAGAAGCG 59.866 52.381 0.00 0.00 0.00 4.68
3886 4915 6.489603 AGTTGTGAAGAGAGATAAGGAGAGA 58.510 40.000 0.00 0.00 0.00 3.10
3911 4940 3.327757 AGATATGGAGAGAGAGCTCGAGT 59.672 47.826 15.13 0.23 45.98 4.18
4075 5104 1.211457 GATGAGTCTGCCCATGGTCTT 59.789 52.381 11.73 0.00 0.00 3.01
4222 5251 0.773644 TGCTGGAGGAGAGGCTTTTT 59.226 50.000 0.00 0.00 0.00 1.94
4254 5283 7.096271 CGAAGATGAAGAATCCGATAACTTGAG 60.096 40.741 5.75 0.00 35.72 3.02
4287 5316 7.472334 AGCATTTCACAGAAGATAACCATTT 57.528 32.000 0.00 0.00 0.00 2.32
4357 5386 4.386867 TCAGGATAGTAGAAAAGGCGTG 57.613 45.455 0.00 0.00 0.00 5.34
4427 5456 2.444766 AGAAATGGGAATGGCCTCCTAG 59.555 50.000 10.70 0.00 35.63 3.02
4443 5472 1.066430 CCTAGCAAAGCAAGGTACCGA 60.066 52.381 6.18 0.00 0.00 4.69
4444 5473 2.271800 CTAGCAAAGCAAGGTACCGAG 58.728 52.381 6.18 4.14 0.00 4.63
4518 5547 0.379669 GCAATTGCCAGTGAGATCGG 59.620 55.000 20.06 0.00 34.31 4.18
4552 5581 2.433145 TTGCAAGCTCTCGAGGCG 60.433 61.111 13.56 5.42 34.52 5.52
4606 5635 0.827507 TGAACAAAGGAGGCAAGGGC 60.828 55.000 0.00 0.00 40.13 5.19
4924 5954 2.338577 AGCTATGCACTCCACATTCC 57.661 50.000 0.00 0.00 0.00 3.01
4933 5963 3.763897 GCACTCCACATTCCCTTTGTATT 59.236 43.478 0.00 0.00 0.00 1.89
4938 5968 7.339212 CACTCCACATTCCCTTTGTATTCAATA 59.661 37.037 0.00 0.00 33.32 1.90
4939 5969 8.061304 ACTCCACATTCCCTTTGTATTCAATAT 58.939 33.333 0.00 0.00 33.32 1.28
4940 5970 9.573166 CTCCACATTCCCTTTGTATTCAATATA 57.427 33.333 0.00 0.00 33.32 0.86
4941 5971 9.349713 TCCACATTCCCTTTGTATTCAATATAC 57.650 33.333 0.00 0.00 33.32 1.47
4942 5972 9.354673 CCACATTCCCTTTGTATTCAATATACT 57.645 33.333 0.00 0.00 33.32 2.12
4977 6007 0.037605 ACTTTCCCGCCTAACACGAG 60.038 55.000 0.00 0.00 0.00 4.18
5051 6087 2.324330 TGTTCATCAGCGCCAACGG 61.324 57.895 2.29 0.00 40.57 4.44
5076 6116 3.409026 AGATGAAGACACCAACACTCC 57.591 47.619 0.00 0.00 0.00 3.85
5105 6146 1.261480 AGTTTGCACACCACCAACAA 58.739 45.000 0.00 0.00 0.00 2.83
5116 6157 1.639280 CACCAACAACAACAACAGCC 58.361 50.000 0.00 0.00 0.00 4.85
5119 6160 1.476085 CCAACAACAACAACAGCCAGA 59.524 47.619 0.00 0.00 0.00 3.86
5122 6163 3.951775 ACAACAACAACAGCCAGAAAA 57.048 38.095 0.00 0.00 0.00 2.29
5125 6166 4.107622 CAACAACAACAGCCAGAAAAGAG 58.892 43.478 0.00 0.00 0.00 2.85
5126 6167 3.620488 ACAACAACAGCCAGAAAAGAGA 58.380 40.909 0.00 0.00 0.00 3.10
5146 6193 2.424246 GAGAGTTTGCCGACTAGCTAGT 59.576 50.000 26.35 26.35 39.71 2.57
5300 6359 2.421220 TTTTTGGTGGACCGCTTCC 58.579 52.632 4.75 0.00 46.13 3.46
5301 6360 1.110518 TTTTTGGTGGACCGCTTCCC 61.111 55.000 4.75 0.00 45.17 3.97
5302 6361 2.987355 TTTTGGTGGACCGCTTCCCC 62.987 60.000 4.75 1.48 45.17 4.81
5305 6364 4.717313 GTGGACCGCTTCCCCCAC 62.717 72.222 0.00 0.00 45.17 4.61
5308 6367 4.324991 GACCGCTTCCCCCACGTT 62.325 66.667 0.00 0.00 0.00 3.99
5309 6368 4.636435 ACCGCTTCCCCCACGTTG 62.636 66.667 0.00 0.00 0.00 4.10
5310 6369 4.636435 CCGCTTCCCCCACGTTGT 62.636 66.667 0.00 0.00 0.00 3.32
5311 6370 3.353836 CGCTTCCCCCACGTTGTG 61.354 66.667 0.00 0.00 0.00 3.33
5312 6371 2.203294 GCTTCCCCCACGTTGTGT 60.203 61.111 0.00 0.00 0.00 3.72
5313 6372 2.258726 GCTTCCCCCACGTTGTGTC 61.259 63.158 0.00 0.00 0.00 3.67
5314 6373 1.959226 CTTCCCCCACGTTGTGTCG 60.959 63.158 0.00 0.00 0.00 4.35
5315 6374 2.653953 CTTCCCCCACGTTGTGTCGT 62.654 60.000 0.00 0.00 45.10 4.34
5316 6375 2.203098 CCCCCACGTTGTGTCGTT 60.203 61.111 0.00 0.00 42.27 3.85
5317 6376 1.820481 CCCCCACGTTGTGTCGTTT 60.820 57.895 0.00 0.00 42.27 3.60
5318 6377 0.532417 CCCCCACGTTGTGTCGTTTA 60.532 55.000 0.00 0.00 42.27 2.01
5319 6378 1.297664 CCCCACGTTGTGTCGTTTAA 58.702 50.000 0.00 0.00 42.27 1.52
5320 6379 1.874872 CCCCACGTTGTGTCGTTTAAT 59.125 47.619 0.00 0.00 42.27 1.40
5321 6380 2.291190 CCCCACGTTGTGTCGTTTAATT 59.709 45.455 0.00 0.00 42.27 1.40
5322 6381 3.243134 CCCCACGTTGTGTCGTTTAATTT 60.243 43.478 0.00 0.00 42.27 1.82
5323 6382 3.726730 CCCACGTTGTGTCGTTTAATTTG 59.273 43.478 0.00 0.00 42.27 2.32
5324 6383 3.178814 CCACGTTGTGTCGTTTAATTTGC 59.821 43.478 0.00 0.00 42.27 3.68
5325 6384 3.786576 CACGTTGTGTCGTTTAATTTGCA 59.213 39.130 0.00 0.00 42.27 4.08
5326 6385 4.439449 CACGTTGTGTCGTTTAATTTGCAT 59.561 37.500 0.00 0.00 42.27 3.96
5327 6386 4.673311 ACGTTGTGTCGTTTAATTTGCATC 59.327 37.500 0.00 0.00 41.37 3.91
5328 6387 4.909305 CGTTGTGTCGTTTAATTTGCATCT 59.091 37.500 0.00 0.00 0.00 2.90
5329 6388 5.398122 CGTTGTGTCGTTTAATTTGCATCTT 59.602 36.000 0.00 0.00 0.00 2.40
5330 6389 6.571588 GTTGTGTCGTTTAATTTGCATCTTG 58.428 36.000 0.00 0.00 0.00 3.02
5331 6390 5.826586 TGTGTCGTTTAATTTGCATCTTGT 58.173 33.333 0.00 0.00 0.00 3.16
5332 6391 5.685068 TGTGTCGTTTAATTTGCATCTTGTG 59.315 36.000 0.00 0.00 0.00 3.33
5333 6392 5.116983 GTGTCGTTTAATTTGCATCTTGTGG 59.883 40.000 0.00 0.00 0.00 4.17
5334 6393 4.621034 GTCGTTTAATTTGCATCTTGTGGG 59.379 41.667 0.00 0.00 0.00 4.61
5335 6394 3.925913 CGTTTAATTTGCATCTTGTGGGG 59.074 43.478 0.00 0.00 0.00 4.96
5336 6395 4.560513 CGTTTAATTTGCATCTTGTGGGGT 60.561 41.667 0.00 0.00 0.00 4.95
5337 6396 5.304778 GTTTAATTTGCATCTTGTGGGGTT 58.695 37.500 0.00 0.00 0.00 4.11
5338 6397 5.559148 TTAATTTGCATCTTGTGGGGTTT 57.441 34.783 0.00 0.00 0.00 3.27
5339 6398 2.906691 TTTGCATCTTGTGGGGTTTG 57.093 45.000 0.00 0.00 0.00 2.93
5340 6399 1.786937 TTGCATCTTGTGGGGTTTGT 58.213 45.000 0.00 0.00 0.00 2.83
5341 6400 1.039068 TGCATCTTGTGGGGTTTGTG 58.961 50.000 0.00 0.00 0.00 3.33
5342 6401 1.039856 GCATCTTGTGGGGTTTGTGT 58.960 50.000 0.00 0.00 0.00 3.72
5343 6402 1.412343 GCATCTTGTGGGGTTTGTGTT 59.588 47.619 0.00 0.00 0.00 3.32
5344 6403 2.545742 GCATCTTGTGGGGTTTGTGTTC 60.546 50.000 0.00 0.00 0.00 3.18
5345 6404 1.770294 TCTTGTGGGGTTTGTGTTCC 58.230 50.000 0.00 0.00 0.00 3.62
5346 6405 0.383949 CTTGTGGGGTTTGTGTTCCG 59.616 55.000 0.00 0.00 0.00 4.30
5347 6406 0.034380 TTGTGGGGTTTGTGTTCCGA 60.034 50.000 0.00 0.00 0.00 4.55
5348 6407 0.034380 TGTGGGGTTTGTGTTCCGAA 60.034 50.000 0.00 0.00 0.00 4.30
5349 6408 0.382873 GTGGGGTTTGTGTTCCGAAC 59.617 55.000 4.18 4.18 36.81 3.95
5350 6409 0.256464 TGGGGTTTGTGTTCCGAACT 59.744 50.000 12.43 0.00 37.56 3.01
5351 6410 1.341187 TGGGGTTTGTGTTCCGAACTT 60.341 47.619 12.43 0.00 37.56 2.66
5352 6411 1.752498 GGGGTTTGTGTTCCGAACTTT 59.248 47.619 12.43 0.00 37.56 2.66
5353 6412 2.166870 GGGGTTTGTGTTCCGAACTTTT 59.833 45.455 12.43 0.00 37.56 2.27
5354 6413 3.183754 GGGTTTGTGTTCCGAACTTTTG 58.816 45.455 12.43 0.00 37.56 2.44
5355 6414 2.601314 GGTTTGTGTTCCGAACTTTTGC 59.399 45.455 12.43 1.11 37.56 3.68
5356 6415 3.507786 GTTTGTGTTCCGAACTTTTGCT 58.492 40.909 12.43 0.00 34.98 3.91
5357 6416 3.414549 TTGTGTTCCGAACTTTTGCTC 57.585 42.857 12.43 0.00 0.00 4.26
5358 6417 2.360844 TGTGTTCCGAACTTTTGCTCA 58.639 42.857 12.43 0.00 0.00 4.26
5359 6418 2.750166 TGTGTTCCGAACTTTTGCTCAA 59.250 40.909 12.43 0.00 0.00 3.02
5360 6419 3.181501 TGTGTTCCGAACTTTTGCTCAAG 60.182 43.478 12.43 0.00 0.00 3.02
5361 6420 2.357637 TGTTCCGAACTTTTGCTCAAGG 59.642 45.455 12.43 0.00 0.00 3.61
5432 6669 2.421424 AGAAATCATGGCTTTGCGAGAC 59.579 45.455 0.00 0.00 0.00 3.36
5433 6670 2.119801 AATCATGGCTTTGCGAGACT 57.880 45.000 0.00 0.00 33.09 3.24
5435 6672 0.321346 TCATGGCTTTGCGAGACTGA 59.679 50.000 0.00 0.00 33.09 3.41
5436 6673 0.725686 CATGGCTTTGCGAGACTGAG 59.274 55.000 0.00 0.00 33.09 3.35
5437 6674 0.610174 ATGGCTTTGCGAGACTGAGA 59.390 50.000 0.00 0.00 33.09 3.27
5443 6680 2.481289 TTGCGAGACTGAGAGAGAGA 57.519 50.000 0.00 0.00 0.00 3.10
5521 6759 3.901844 GGTTGCCAGGTAGTATAGGATGA 59.098 47.826 0.00 0.00 0.00 2.92
5528 6766 7.017551 TGCCAGGTAGTATAGGATGAATGAATT 59.982 37.037 0.00 0.00 0.00 2.17
5559 6797 8.970859 AAAAATAGAGAGAGAGAGAGAGAGAG 57.029 38.462 0.00 0.00 0.00 3.20
5570 6808 8.034804 AGAGAGAGAGAGAGAGCATTTTTAAAC 58.965 37.037 0.00 0.00 0.00 2.01
5662 6924 4.401022 TGTGTGATGAGGAAGAAGCATTT 58.599 39.130 0.00 0.00 0.00 2.32
5679 6941 0.895100 TTTGCTGTGGGCTGTGGATC 60.895 55.000 0.00 0.00 42.39 3.36
5680 6942 2.821366 GCTGTGGGCTGTGGATCG 60.821 66.667 0.00 0.00 38.06 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.118482 TGCTAGCACGGAGTAGTACTAGT 60.118 47.826 14.93 10.09 41.61 2.57
1 2 3.464907 TGCTAGCACGGAGTAGTACTAG 58.535 50.000 14.93 3.34 41.61 2.57
2 3 3.464907 CTGCTAGCACGGAGTAGTACTA 58.535 50.000 14.93 0.00 41.61 1.82
3 4 2.290464 CTGCTAGCACGGAGTAGTACT 58.710 52.381 14.93 1.37 41.61 2.73
4 5 1.334243 CCTGCTAGCACGGAGTAGTAC 59.666 57.143 21.82 0.00 41.61 2.73
30 31 0.960364 GGAGAAAATGGCACGGCAGA 60.960 55.000 0.00 0.00 0.00 4.26
64 65 0.238553 GGCTTGCTCGTTTTCAGACC 59.761 55.000 0.00 0.00 0.00 3.85
144 166 0.616395 TAGATTCTGGTGCCCACGGA 60.616 55.000 0.00 0.00 0.00 4.69
148 170 0.618458 GTGGTAGATTCTGGTGCCCA 59.382 55.000 0.00 0.00 0.00 5.36
173 207 1.228533 TTTCCCGTTCCGTTTGTAGC 58.771 50.000 0.00 0.00 0.00 3.58
175 209 3.405823 AGATTTCCCGTTCCGTTTGTA 57.594 42.857 0.00 0.00 0.00 2.41
189 230 6.483385 TCGATAGATCTCCGTGTAGATTTC 57.517 41.667 14.52 0.00 42.67 2.17
276 320 2.485795 CGAGCTCTTCTCCTCCGGG 61.486 68.421 12.85 0.00 38.62 5.73
277 321 3.115556 CGAGCTCTTCTCCTCCGG 58.884 66.667 12.85 0.00 38.62 5.14
278 322 2.411290 GCGAGCTCTTCTCCTCCG 59.589 66.667 12.85 0.00 38.62 4.63
344 393 6.360329 GCCGTAATTAATCAGTAATTCGGTG 58.640 40.000 19.93 6.15 44.36 4.94
345 394 5.467735 GGCCGTAATTAATCAGTAATTCGGT 59.532 40.000 19.93 0.00 44.36 4.69
347 396 6.533819 TGGCCGTAATTAATCAGTAATTCG 57.466 37.500 0.00 0.00 40.80 3.34
380 429 3.630312 GCTGGTAAATCCTCGCCATTAAA 59.370 43.478 0.00 0.00 37.07 1.52
453 504 5.888724 GGGAGAATAAAAAGGAAGGAGGAAG 59.111 44.000 0.00 0.00 0.00 3.46
511 565 2.567985 GAGTTTGGTGGAAAGGACGAA 58.432 47.619 0.00 0.00 0.00 3.85
553 611 1.000041 GTCTAGGAGGAGGGGGAGGA 61.000 65.000 0.00 0.00 0.00 3.71
554 612 1.544703 GTCTAGGAGGAGGGGGAGG 59.455 68.421 0.00 0.00 0.00 4.30
556 614 2.019272 GGGTCTAGGAGGAGGGGGA 61.019 68.421 0.00 0.00 0.00 4.81
558 616 2.021652 AGGGGTCTAGGAGGAGGGG 61.022 68.421 0.00 0.00 0.00 4.79
559 617 1.544703 GAGGGGTCTAGGAGGAGGG 59.455 68.421 0.00 0.00 0.00 4.30
561 619 0.481128 GAGGAGGGGTCTAGGAGGAG 59.519 65.000 0.00 0.00 0.00 3.69
562 620 1.000041 GGAGGAGGGGTCTAGGAGGA 61.000 65.000 0.00 0.00 0.00 3.71
643 708 1.070105 CCAAGAACGAACACCGGGA 59.930 57.895 6.32 0.00 43.93 5.14
778 848 4.349365 GAAGAGGAGGAAGAGGAAGAAGA 58.651 47.826 0.00 0.00 0.00 2.87
779 849 3.130340 CGAAGAGGAGGAAGAGGAAGAAG 59.870 52.174 0.00 0.00 0.00 2.85
780 850 3.093057 CGAAGAGGAGGAAGAGGAAGAA 58.907 50.000 0.00 0.00 0.00 2.52
781 851 2.041891 ACGAAGAGGAGGAAGAGGAAGA 59.958 50.000 0.00 0.00 0.00 2.87
782 852 2.165437 CACGAAGAGGAGGAAGAGGAAG 59.835 54.545 0.00 0.00 0.00 3.46
981 1057 2.110006 GAATCTCCCCGGCTCTGC 59.890 66.667 0.00 0.00 0.00 4.26
1704 1809 1.227205 GGGCTCAGATGACAGCTCG 60.227 63.158 0.00 0.00 35.82 5.03
1733 1838 5.535406 GGCAAATGATCATCTGATTCCTTCT 59.465 40.000 13.32 0.00 34.37 2.85
1735 1840 4.277672 CGGCAAATGATCATCTGATTCCTT 59.722 41.667 13.32 0.00 34.37 3.36
1739 1844 3.819337 CTCCGGCAAATGATCATCTGATT 59.181 43.478 13.32 0.00 34.37 2.57
1741 1846 2.435437 TCTCCGGCAAATGATCATCTGA 59.565 45.455 13.32 0.25 0.00 3.27
1745 1850 1.770658 TCCTCTCCGGCAAATGATCAT 59.229 47.619 1.18 1.18 0.00 2.45
1753 1858 1.125093 TCAACCTTCCTCTCCGGCAA 61.125 55.000 0.00 0.00 0.00 4.52
1771 1900 3.191371 ACAAATTTCTCCTCGTTGGCATC 59.809 43.478 0.00 0.00 35.26 3.91
1898 2052 4.690748 CAGTGGACATGTTTGGTACAGTAG 59.309 45.833 0.00 0.00 42.39 2.57
2016 2273 4.965200 AGAAGTCTTTGTAGGAGCACTT 57.035 40.909 0.00 0.00 0.00 3.16
2017 2274 4.965200 AAGAAGTCTTTGTAGGAGCACT 57.035 40.909 0.00 0.00 30.82 4.40
2018 2275 7.674471 AAATAAGAAGTCTTTGTAGGAGCAC 57.326 36.000 0.00 0.00 37.40 4.40
2019 2276 9.436957 CTAAAATAAGAAGTCTTTGTAGGAGCA 57.563 33.333 0.00 0.00 37.40 4.26
2020 2277 8.391859 GCTAAAATAAGAAGTCTTTGTAGGAGC 58.608 37.037 0.00 0.00 37.40 4.70
2021 2278 9.660180 AGCTAAAATAAGAAGTCTTTGTAGGAG 57.340 33.333 0.00 0.00 37.40 3.69
2022 2279 9.436957 CAGCTAAAATAAGAAGTCTTTGTAGGA 57.563 33.333 0.00 0.00 37.40 2.94
2023 2280 9.436957 TCAGCTAAAATAAGAAGTCTTTGTAGG 57.563 33.333 0.00 0.00 37.40 3.18
2026 2283 8.951243 GGATCAGCTAAAATAAGAAGTCTTTGT 58.049 33.333 0.00 0.00 37.40 2.83
2027 2284 8.950210 TGGATCAGCTAAAATAAGAAGTCTTTG 58.050 33.333 0.00 0.00 37.40 2.77
2028 2285 9.692325 ATGGATCAGCTAAAATAAGAAGTCTTT 57.308 29.630 0.00 0.00 37.40 2.52
2029 2286 9.336171 GATGGATCAGCTAAAATAAGAAGTCTT 57.664 33.333 0.00 0.00 39.85 3.01
2030 2287 7.936301 GGATGGATCAGCTAAAATAAGAAGTCT 59.064 37.037 0.00 0.00 0.00 3.24
2031 2288 7.174080 GGGATGGATCAGCTAAAATAAGAAGTC 59.826 40.741 0.00 0.00 0.00 3.01
2032 2289 7.001073 GGGATGGATCAGCTAAAATAAGAAGT 58.999 38.462 0.00 0.00 0.00 3.01
2033 2290 7.000472 TGGGATGGATCAGCTAAAATAAGAAG 59.000 38.462 0.00 0.00 0.00 2.85
2133 3132 7.171678 GTGTATAAGAGGTCCATTTCATGCTAC 59.828 40.741 0.00 0.00 0.00 3.58
2247 3246 7.909485 TCTTATATTTCTTTACGGAGGGAGT 57.091 36.000 0.00 0.00 0.00 3.85
2248 3247 9.209175 CATTCTTATATTTCTTTACGGAGGGAG 57.791 37.037 0.00 0.00 0.00 4.30
2249 3248 8.711170 ACATTCTTATATTTCTTTACGGAGGGA 58.289 33.333 0.00 0.00 0.00 4.20
2250 3249 8.904099 ACATTCTTATATTTCTTTACGGAGGG 57.096 34.615 0.00 0.00 0.00 4.30
2291 3290 9.601217 AACAAATATAAGAGCGTTTAGATCACT 57.399 29.630 0.00 0.00 37.82 3.41
2299 3298 8.665685 CCTCTGTAAACAAATATAAGAGCGTTT 58.334 33.333 0.00 0.00 0.00 3.60
2300 3299 7.280205 CCCTCTGTAAACAAATATAAGAGCGTT 59.720 37.037 0.00 0.00 0.00 4.84
2301 3300 6.761714 CCCTCTGTAAACAAATATAAGAGCGT 59.238 38.462 0.00 0.00 0.00 5.07
2302 3301 6.984474 TCCCTCTGTAAACAAATATAAGAGCG 59.016 38.462 0.00 0.00 0.00 5.03
2303 3302 7.988028 ACTCCCTCTGTAAACAAATATAAGAGC 59.012 37.037 0.00 0.00 0.00 4.09
2306 3305 9.543783 GGTACTCCCTCTGTAAACAAATATAAG 57.456 37.037 0.00 0.00 0.00 1.73
2307 3306 9.275572 AGGTACTCCCTCTGTAAACAAATATAA 57.724 33.333 0.00 0.00 40.71 0.98
2308 3307 8.849543 AGGTACTCCCTCTGTAAACAAATATA 57.150 34.615 0.00 0.00 40.71 0.86
2309 3308 7.750947 AGGTACTCCCTCTGTAAACAAATAT 57.249 36.000 0.00 0.00 40.71 1.28
2310 3309 8.849543 ATAGGTACTCCCTCTGTAAACAAATA 57.150 34.615 0.00 0.00 44.81 1.40
2311 3310 7.624077 AGATAGGTACTCCCTCTGTAAACAAAT 59.376 37.037 0.00 0.00 44.81 2.32
2312 3311 6.958192 AGATAGGTACTCCCTCTGTAAACAAA 59.042 38.462 0.00 0.00 44.81 2.83
2313 3312 6.500336 AGATAGGTACTCCCTCTGTAAACAA 58.500 40.000 0.00 0.00 44.81 2.83
2314 3313 6.088541 AGATAGGTACTCCCTCTGTAAACA 57.911 41.667 0.00 0.00 44.81 2.83
2315 3314 7.421087 AAAGATAGGTACTCCCTCTGTAAAC 57.579 40.000 0.00 0.00 44.81 2.01
2316 3315 7.676893 TCAAAAGATAGGTACTCCCTCTGTAAA 59.323 37.037 0.00 0.00 44.81 2.01
2317 3316 7.186972 TCAAAAGATAGGTACTCCCTCTGTAA 58.813 38.462 0.00 0.00 44.81 2.41
2318 3317 6.738635 TCAAAAGATAGGTACTCCCTCTGTA 58.261 40.000 0.00 0.00 44.81 2.74
2319 3318 5.590818 TCAAAAGATAGGTACTCCCTCTGT 58.409 41.667 0.00 0.00 44.81 3.41
2320 3319 6.546428 TTCAAAAGATAGGTACTCCCTCTG 57.454 41.667 0.00 0.00 44.81 3.35
2321 3320 7.569240 CAATTCAAAAGATAGGTACTCCCTCT 58.431 38.462 0.00 0.00 44.81 3.69
2322 3321 6.261158 GCAATTCAAAAGATAGGTACTCCCTC 59.739 42.308 0.00 0.00 44.81 4.30
2324 3323 6.122964 AGCAATTCAAAAGATAGGTACTCCC 58.877 40.000 0.00 0.00 41.75 4.30
2325 3324 6.261158 GGAGCAATTCAAAAGATAGGTACTCC 59.739 42.308 0.00 0.00 41.75 3.85
2326 3325 6.823689 TGGAGCAATTCAAAAGATAGGTACTC 59.176 38.462 0.00 0.00 41.75 2.59
2327 3326 6.599638 GTGGAGCAATTCAAAAGATAGGTACT 59.400 38.462 0.00 0.00 46.37 2.73
2328 3327 6.456988 CGTGGAGCAATTCAAAAGATAGGTAC 60.457 42.308 0.00 0.00 0.00 3.34
2329 3328 5.584649 CGTGGAGCAATTCAAAAGATAGGTA 59.415 40.000 0.00 0.00 0.00 3.08
2388 3388 9.278978 TGTCTATTGTACTTTGCTAAAATGACA 57.721 29.630 0.00 0.00 0.00 3.58
2414 3414 9.762933 ACACAACAATTTGCAAGAAATAATACT 57.237 25.926 0.00 0.00 36.00 2.12
2478 3478 7.971455 TCGGCTAAAAGCTAAAATAAGAAGTC 58.029 34.615 0.00 0.00 41.99 3.01
2501 3502 4.767478 AGCATATCTCATGGAATGGATCG 58.233 43.478 0.00 0.00 46.73 3.69
2508 3509 8.377799 TGCTAAAATCTAGCATATCTCATGGAA 58.622 33.333 2.37 0.00 44.65 3.53
2573 3574 0.983467 TGCTATCAAGGACACTGCCA 59.017 50.000 0.00 0.00 0.00 4.92
2592 3593 9.715121 TCTATTTAGTTAAGACGTCCATTTTGT 57.285 29.630 13.01 0.00 0.00 2.83
2622 3623 7.678947 AAAGGACTGTAGATGACAAGAAATG 57.321 36.000 0.00 0.00 37.70 2.32
2647 3650 3.402628 ACTATCAGCACGGAACAACTT 57.597 42.857 0.00 0.00 0.00 2.66
2861 3878 4.373156 ACCAGCACCTCTTCAGTATTTT 57.627 40.909 0.00 0.00 0.00 1.82
2943 3960 2.144482 TCTCGTTCGAAACCTCCAAC 57.856 50.000 0.00 0.00 0.00 3.77
2945 3962 1.409790 TGTTCTCGTTCGAAACCTCCA 59.590 47.619 0.00 0.00 0.00 3.86
2946 3963 1.791204 GTGTTCTCGTTCGAAACCTCC 59.209 52.381 0.00 0.00 0.00 4.30
3075 4092 3.250762 CCGATTCTTGTTTCAACTCAGCA 59.749 43.478 0.00 0.00 0.00 4.41
3078 4095 4.703897 AGTCCGATTCTTGTTTCAACTCA 58.296 39.130 0.00 0.00 0.00 3.41
3095 4112 3.114616 CAAGTGCCGCAGAGTCCG 61.115 66.667 0.00 0.00 0.00 4.79
3113 4130 7.736447 ATCTCTGTAACTTGTTCCAAAGAAG 57.264 36.000 0.00 0.00 37.74 2.85
3119 4136 7.012327 CACTTGAAATCTCTGTAACTTGTTCCA 59.988 37.037 0.00 0.00 0.00 3.53
3152 4169 3.068590 AGGCTGTTCAACATGGTTTTCAG 59.931 43.478 0.00 0.00 0.00 3.02
3182 4199 2.754552 GCCATAAAAGTGGACAGATGCA 59.245 45.455 0.00 0.00 42.02 3.96
3183 4200 2.754552 TGCCATAAAAGTGGACAGATGC 59.245 45.455 0.00 0.00 42.02 3.91
3187 4204 2.161855 TGCTGCCATAAAAGTGGACAG 58.838 47.619 0.00 10.80 42.02 3.51
3189 4206 1.474077 CCTGCTGCCATAAAAGTGGAC 59.526 52.381 0.00 0.00 42.02 4.02
3210 4227 0.679505 CACCGGGAGACTCAAGAACA 59.320 55.000 6.32 0.00 0.00 3.18
3212 4229 1.420430 AACACCGGGAGACTCAAGAA 58.580 50.000 6.32 0.00 0.00 2.52
3213 4230 2.297698 TAACACCGGGAGACTCAAGA 57.702 50.000 6.32 0.00 0.00 3.02
3214 4231 2.685100 GTTAACACCGGGAGACTCAAG 58.315 52.381 6.32 0.00 0.00 3.02
3215 4232 1.000060 CGTTAACACCGGGAGACTCAA 60.000 52.381 6.32 0.00 0.00 3.02
3216 4233 0.599558 CGTTAACACCGGGAGACTCA 59.400 55.000 6.32 0.00 0.00 3.41
3217 4234 0.735287 GCGTTAACACCGGGAGACTC 60.735 60.000 6.32 0.00 0.00 3.36
3218 4235 1.291272 GCGTTAACACCGGGAGACT 59.709 57.895 6.32 0.00 0.00 3.24
3219 4236 1.739196 GGCGTTAACACCGGGAGAC 60.739 63.158 6.32 0.00 0.00 3.36
3220 4237 2.208619 TGGCGTTAACACCGGGAGA 61.209 57.895 6.32 0.00 0.00 3.71
3221 4238 2.030958 GTGGCGTTAACACCGGGAG 61.031 63.158 6.32 0.00 32.80 4.30
3222 4239 2.030862 GTGGCGTTAACACCGGGA 59.969 61.111 6.32 0.00 32.80 5.14
3227 4244 1.957186 TCTGCGGTGGCGTTAACAC 60.957 57.895 6.39 0.00 44.10 3.32
3228 4245 1.957186 GTCTGCGGTGGCGTTAACA 60.957 57.895 6.39 0.00 44.10 2.41
3229 4246 2.674084 GGTCTGCGGTGGCGTTAAC 61.674 63.158 0.00 0.00 44.10 2.01
3230 4247 2.357760 GGTCTGCGGTGGCGTTAA 60.358 61.111 0.00 0.00 44.10 2.01
3231 4248 3.166490 TTGGTCTGCGGTGGCGTTA 62.166 57.895 0.00 0.00 44.10 3.18
3232 4249 4.555709 TTGGTCTGCGGTGGCGTT 62.556 61.111 0.00 0.00 44.10 4.84
3233 4250 4.988598 CTTGGTCTGCGGTGGCGT 62.989 66.667 0.00 0.00 44.10 5.68
3235 4252 2.741486 TTACCTTGGTCTGCGGTGGC 62.741 60.000 0.00 0.00 40.52 5.01
3236 4253 0.250553 TTTACCTTGGTCTGCGGTGG 60.251 55.000 0.00 0.00 32.36 4.61
3237 4254 1.600023 TTTTACCTTGGTCTGCGGTG 58.400 50.000 0.00 0.00 32.36 4.94
3238 4255 2.159382 CATTTTACCTTGGTCTGCGGT 58.841 47.619 0.00 0.00 34.86 5.68
3239 4256 2.159382 ACATTTTACCTTGGTCTGCGG 58.841 47.619 0.00 0.00 0.00 5.69
3240 4257 3.915437 AACATTTTACCTTGGTCTGCG 57.085 42.857 0.00 0.00 0.00 5.18
3241 4258 5.709966 CCTTAACATTTTACCTTGGTCTGC 58.290 41.667 0.00 0.00 0.00 4.26
3242 4259 5.476945 AGCCTTAACATTTTACCTTGGTCTG 59.523 40.000 0.00 0.00 0.00 3.51
3243 4260 5.641155 AGCCTTAACATTTTACCTTGGTCT 58.359 37.500 0.00 0.00 0.00 3.85
3244 4261 5.977489 AGCCTTAACATTTTACCTTGGTC 57.023 39.130 0.00 0.00 0.00 4.02
3245 4262 9.185680 CTTATAGCCTTAACATTTTACCTTGGT 57.814 33.333 0.00 0.00 0.00 3.67
3246 4263 9.403583 TCTTATAGCCTTAACATTTTACCTTGG 57.596 33.333 0.00 0.00 0.00 3.61
3277 4306 5.028428 GCAAACAGCTTGAAACAAACAAA 57.972 34.783 0.00 0.00 41.15 2.83
3278 4307 4.660352 GCAAACAGCTTGAAACAAACAA 57.340 36.364 0.00 0.00 41.15 2.83
3291 4320 4.477302 AAATCAAAATGCAGCAAACAGC 57.523 36.364 0.00 0.00 46.19 4.40
3312 4341 8.951787 ATGTAGCCAATCGTATTAAACAAGTA 57.048 30.769 0.00 0.00 0.00 2.24
3325 4354 7.257722 AGGATTGTTTAAAATGTAGCCAATCG 58.742 34.615 14.33 0.00 38.23 3.34
3392 4421 2.289694 GGTGCAAGCTTGGTAGAAGAGA 60.290 50.000 27.10 0.00 0.00 3.10
3393 4422 2.079925 GGTGCAAGCTTGGTAGAAGAG 58.920 52.381 27.10 0.00 0.00 2.85
3445 4474 6.041423 TCACTGCAGTCAGAAGATGATTTA 57.959 37.500 18.64 0.00 42.95 1.40
3832 4861 2.396955 CCTCTGCAGCGCTTCTTGG 61.397 63.158 7.50 2.94 0.00 3.61
3841 4870 0.945813 GATCATTCAGCCTCTGCAGC 59.054 55.000 9.47 0.00 41.13 5.25
3886 4915 3.820467 CGAGCTCTCTCTCCATATCTTGT 59.180 47.826 12.85 0.00 37.19 3.16
3911 4940 4.769688 AGATGAATCTTGTGGCGATACAA 58.230 39.130 5.08 5.08 38.17 2.41
4075 5104 4.199310 GACTACTGCCATTGCTTCCATTA 58.801 43.478 0.00 0.00 38.71 1.90
4162 5191 2.175202 GAGAGCCTCTCTTCCTCACAA 58.825 52.381 14.59 0.00 41.35 3.33
4222 5251 3.181486 CGGATTCTTCATCTTCGAGGTCA 60.181 47.826 0.00 0.00 31.67 4.02
4254 5283 3.084039 TCTGTGAAATGCTTGTCCATCC 58.916 45.455 0.00 0.00 0.00 3.51
4287 5316 2.279935 ACCATTTGAGGCACCGTTTA 57.720 45.000 0.00 0.00 0.00 2.01
4333 5362 3.804873 CGCCTTTTCTACTATCCTGAAGC 59.195 47.826 0.00 0.00 0.00 3.86
4339 5368 3.124560 GCTCACGCCTTTTCTACTATCC 58.875 50.000 0.00 0.00 0.00 2.59
4357 5386 3.727726 GAGCTTCTTTCCTCCATAGCTC 58.272 50.000 0.00 0.00 45.14 4.09
4427 5456 1.923227 GCCTCGGTACCTTGCTTTGC 61.923 60.000 10.90 0.00 0.00 3.68
4443 5472 1.130054 TTCTGCTGAAGGGTCTGCCT 61.130 55.000 1.33 0.00 45.50 4.75
4444 5473 0.676151 CTTCTGCTGAAGGGTCTGCC 60.676 60.000 22.01 0.00 45.50 4.85
4501 5530 1.278985 TGACCGATCTCACTGGCAATT 59.721 47.619 0.00 0.00 0.00 2.32
4518 5547 0.445436 CAAGCGCTCATGGACTTGAC 59.555 55.000 12.06 0.00 41.59 3.18
4552 5581 4.154918 CACTGCTTTATGAACTCCTTGTCC 59.845 45.833 0.00 0.00 0.00 4.02
4606 5635 6.348376 GCAAGATCTCCTGAAGAAGAACAAAG 60.348 42.308 0.00 0.00 37.61 2.77
4674 5703 2.275318 GCGAGATTTCTCCAGAGTTGG 58.725 52.381 2.08 0.00 46.49 3.77
4736 5765 1.124116 CATAAACAAAAAGTGCGCGCC 59.876 47.619 30.77 19.97 0.00 6.53
4771 5800 5.610398 TGTACCATACTCCATGTGCAATAG 58.390 41.667 0.00 0.00 32.21 1.73
4837 5866 7.984050 TGGAATTAATGAACTTGCAAAAGTTGA 59.016 29.630 8.50 0.65 42.57 3.18
4879 5908 5.987347 CCTTTCGGAAAGTGTTAGTGTTCTA 59.013 40.000 24.50 0.00 36.77 2.10
4939 5969 9.602568 GGGAAAGTTTGGTGAAAATTTTAAGTA 57.397 29.630 2.75 0.00 38.97 2.24
4940 5970 7.279090 CGGGAAAGTTTGGTGAAAATTTTAAGT 59.721 33.333 2.75 0.00 38.97 2.24
4941 5971 7.626446 CGGGAAAGTTTGGTGAAAATTTTAAG 58.374 34.615 2.75 0.00 38.97 1.85
4942 5972 6.037281 GCGGGAAAGTTTGGTGAAAATTTTAA 59.963 34.615 2.75 0.00 38.97 1.52
4943 5973 5.524281 GCGGGAAAGTTTGGTGAAAATTTTA 59.476 36.000 2.75 0.00 38.97 1.52
4944 5974 4.334203 GCGGGAAAGTTTGGTGAAAATTTT 59.666 37.500 2.28 2.28 38.97 1.82
4977 6007 2.097825 AGAAATCAGGCCAGAATGTGC 58.902 47.619 5.01 0.00 0.00 4.57
5038 6074 1.078497 TTGATCCGTTGGCGCTGAT 60.078 52.632 7.64 1.87 36.67 2.90
5051 6087 4.999950 AGTGTTGGTGTCTTCATCTTGATC 59.000 41.667 0.00 0.00 0.00 2.92
5076 6116 3.923461 TGGTGTGCAAACTTTCTTTTTCG 59.077 39.130 7.04 0.00 0.00 3.46
5105 6146 3.620488 TCTCTTTTCTGGCTGTTGTTGT 58.380 40.909 0.00 0.00 0.00 3.32
5116 6157 3.185391 GTCGGCAAACTCTCTCTTTTCTG 59.815 47.826 0.00 0.00 0.00 3.02
5119 6160 3.477210 AGTCGGCAAACTCTCTCTTTT 57.523 42.857 0.00 0.00 0.00 2.27
5122 6163 1.474879 GCTAGTCGGCAAACTCTCTCT 59.525 52.381 0.00 0.00 0.00 3.10
5125 6166 2.424246 ACTAGCTAGTCGGCAAACTCTC 59.576 50.000 20.95 0.00 34.17 3.20
5126 6167 2.448453 ACTAGCTAGTCGGCAAACTCT 58.552 47.619 20.95 0.00 34.17 3.24
5146 6193 3.288092 TCTTCTCGCCTGACTATGCTAA 58.712 45.455 0.00 0.00 0.00 3.09
5297 6356 2.109387 CGACACAACGTGGGGGAA 59.891 61.111 0.00 0.00 37.94 3.97
5298 6357 2.254737 AAACGACACAACGTGGGGGA 62.255 55.000 0.00 0.00 45.83 4.81
5299 6358 0.532417 TAAACGACACAACGTGGGGG 60.532 55.000 0.00 0.00 45.83 5.40
5300 6359 1.297664 TTAAACGACACAACGTGGGG 58.702 50.000 0.00 0.00 45.83 4.96
5301 6360 3.612472 AATTAAACGACACAACGTGGG 57.388 42.857 0.00 0.00 45.83 4.61
5302 6361 3.178814 GCAAATTAAACGACACAACGTGG 59.821 43.478 0.00 0.00 45.83 4.94
5303 6362 3.786576 TGCAAATTAAACGACACAACGTG 59.213 39.130 0.00 0.00 45.83 4.49
5305 6364 4.909305 AGATGCAAATTAAACGACACAACG 59.091 37.500 0.00 0.00 39.31 4.10
5306 6365 6.198216 ACAAGATGCAAATTAAACGACACAAC 59.802 34.615 0.00 0.00 0.00 3.32
5307 6366 6.198029 CACAAGATGCAAATTAAACGACACAA 59.802 34.615 0.00 0.00 0.00 3.33
5308 6367 5.685068 CACAAGATGCAAATTAAACGACACA 59.315 36.000 0.00 0.00 0.00 3.72
5309 6368 5.116983 CCACAAGATGCAAATTAAACGACAC 59.883 40.000 0.00 0.00 0.00 3.67
5310 6369 5.218885 CCACAAGATGCAAATTAAACGACA 58.781 37.500 0.00 0.00 0.00 4.35
5311 6370 4.621034 CCCACAAGATGCAAATTAAACGAC 59.379 41.667 0.00 0.00 0.00 4.34
5312 6371 4.321601 CCCCACAAGATGCAAATTAAACGA 60.322 41.667 0.00 0.00 0.00 3.85
5313 6372 3.925913 CCCCACAAGATGCAAATTAAACG 59.074 43.478 0.00 0.00 0.00 3.60
5314 6373 4.893608 ACCCCACAAGATGCAAATTAAAC 58.106 39.130 0.00 0.00 0.00 2.01
5315 6374 5.559148 AACCCCACAAGATGCAAATTAAA 57.441 34.783 0.00 0.00 0.00 1.52
5316 6375 5.163258 ACAAACCCCACAAGATGCAAATTAA 60.163 36.000 0.00 0.00 0.00 1.40
5317 6376 4.346418 ACAAACCCCACAAGATGCAAATTA 59.654 37.500 0.00 0.00 0.00 1.40
5318 6377 3.136260 ACAAACCCCACAAGATGCAAATT 59.864 39.130 0.00 0.00 0.00 1.82
5319 6378 2.705127 ACAAACCCCACAAGATGCAAAT 59.295 40.909 0.00 0.00 0.00 2.32
5320 6379 2.114616 ACAAACCCCACAAGATGCAAA 58.885 42.857 0.00 0.00 0.00 3.68
5321 6380 1.411977 CACAAACCCCACAAGATGCAA 59.588 47.619 0.00 0.00 0.00 4.08
5322 6381 1.039068 CACAAACCCCACAAGATGCA 58.961 50.000 0.00 0.00 0.00 3.96
5323 6382 1.039856 ACACAAACCCCACAAGATGC 58.960 50.000 0.00 0.00 0.00 3.91
5324 6383 2.035832 GGAACACAAACCCCACAAGATG 59.964 50.000 0.00 0.00 0.00 2.90
5325 6384 2.316108 GGAACACAAACCCCACAAGAT 58.684 47.619 0.00 0.00 0.00 2.40
5326 6385 1.770294 GGAACACAAACCCCACAAGA 58.230 50.000 0.00 0.00 0.00 3.02
5327 6386 0.383949 CGGAACACAAACCCCACAAG 59.616 55.000 0.00 0.00 0.00 3.16
5328 6387 0.034380 TCGGAACACAAACCCCACAA 60.034 50.000 0.00 0.00 0.00 3.33
5329 6388 0.034380 TTCGGAACACAAACCCCACA 60.034 50.000 0.00 0.00 0.00 4.17
5330 6389 0.382873 GTTCGGAACACAAACCCCAC 59.617 55.000 15.70 0.00 0.00 4.61
5331 6390 0.256464 AGTTCGGAACACAAACCCCA 59.744 50.000 21.86 0.00 0.00 4.96
5332 6391 1.395635 AAGTTCGGAACACAAACCCC 58.604 50.000 21.86 0.00 0.00 4.95
5333 6392 3.183754 CAAAAGTTCGGAACACAAACCC 58.816 45.455 21.86 0.00 0.00 4.11
5334 6393 2.601314 GCAAAAGTTCGGAACACAAACC 59.399 45.455 21.86 3.25 0.00 3.27
5335 6394 3.507786 AGCAAAAGTTCGGAACACAAAC 58.492 40.909 21.86 8.93 0.00 2.93
5336 6395 3.191581 TGAGCAAAAGTTCGGAACACAAA 59.808 39.130 21.86 0.00 0.00 2.83
5337 6396 2.750166 TGAGCAAAAGTTCGGAACACAA 59.250 40.909 21.86 0.00 0.00 3.33
5338 6397 2.360844 TGAGCAAAAGTTCGGAACACA 58.639 42.857 21.86 7.91 0.00 3.72
5339 6398 3.363178 CTTGAGCAAAAGTTCGGAACAC 58.637 45.455 21.86 6.69 0.00 3.32
5340 6399 2.357637 CCTTGAGCAAAAGTTCGGAACA 59.642 45.455 21.86 0.00 0.00 3.18
5341 6400 2.287608 CCCTTGAGCAAAAGTTCGGAAC 60.288 50.000 12.91 12.91 0.00 3.62
5342 6401 1.953686 CCCTTGAGCAAAAGTTCGGAA 59.046 47.619 0.00 0.00 0.00 4.30
5343 6402 1.604604 CCCTTGAGCAAAAGTTCGGA 58.395 50.000 0.00 0.00 0.00 4.55
5344 6403 0.039165 GCCCTTGAGCAAAAGTTCGG 60.039 55.000 0.00 0.00 0.00 4.30
5345 6404 0.385974 CGCCCTTGAGCAAAAGTTCG 60.386 55.000 0.00 0.00 0.00 3.95
5346 6405 0.951558 TCGCCCTTGAGCAAAAGTTC 59.048 50.000 0.00 0.00 0.00 3.01
5347 6406 0.954452 CTCGCCCTTGAGCAAAAGTT 59.046 50.000 0.00 0.00 0.00 2.66
5348 6407 0.108585 TCTCGCCCTTGAGCAAAAGT 59.891 50.000 0.00 0.00 35.90 2.66
5349 6408 0.519077 GTCTCGCCCTTGAGCAAAAG 59.481 55.000 0.00 0.00 35.90 2.27
5350 6409 1.227999 CGTCTCGCCCTTGAGCAAAA 61.228 55.000 0.00 0.00 35.90 2.44
5351 6410 1.667830 CGTCTCGCCCTTGAGCAAA 60.668 57.895 0.00 0.00 35.90 3.68
5352 6411 2.048222 CGTCTCGCCCTTGAGCAA 60.048 61.111 0.00 0.00 35.90 3.91
5353 6412 4.069232 CCGTCTCGCCCTTGAGCA 62.069 66.667 0.00 0.00 35.90 4.26
5354 6413 3.591254 AACCGTCTCGCCCTTGAGC 62.591 63.158 0.00 0.00 35.90 4.26
5355 6414 1.738099 CAACCGTCTCGCCCTTGAG 60.738 63.158 0.00 0.00 37.33 3.02
5356 6415 2.342279 CAACCGTCTCGCCCTTGA 59.658 61.111 0.00 0.00 0.00 3.02
5357 6416 2.742372 CCAACCGTCTCGCCCTTG 60.742 66.667 0.00 0.00 0.00 3.61
5358 6417 3.239253 ACCAACCGTCTCGCCCTT 61.239 61.111 0.00 0.00 0.00 3.95
5359 6418 4.003788 CACCAACCGTCTCGCCCT 62.004 66.667 0.00 0.00 0.00 5.19
5360 6419 3.934391 CTCACCAACCGTCTCGCCC 62.934 68.421 0.00 0.00 0.00 6.13
5361 6420 2.432628 CTCACCAACCGTCTCGCC 60.433 66.667 0.00 0.00 0.00 5.54
5432 6669 3.119029 CCCAAAAGCTCTCTCTCTCTCAG 60.119 52.174 0.00 0.00 0.00 3.35
5433 6670 2.830923 CCCAAAAGCTCTCTCTCTCTCA 59.169 50.000 0.00 0.00 0.00 3.27
5435 6672 3.182887 TCCCAAAAGCTCTCTCTCTCT 57.817 47.619 0.00 0.00 0.00 3.10
5436 6673 3.971245 TTCCCAAAAGCTCTCTCTCTC 57.029 47.619 0.00 0.00 0.00 3.20
5437 6674 3.054508 CCATTCCCAAAAGCTCTCTCTCT 60.055 47.826 0.00 0.00 0.00 3.10
5443 6680 2.529632 GGAACCATTCCCAAAAGCTCT 58.470 47.619 0.00 0.00 44.30 4.09
5475 6712 2.283173 GGGGGTGGCCTGTTTCAG 60.283 66.667 3.32 0.00 0.00 3.02
5500 6738 5.546621 TTCATCCTATACTACCTGGCAAC 57.453 43.478 0.00 0.00 0.00 4.17
5539 6777 4.546674 TGCTCTCTCTCTCTCTCTCTCTA 58.453 47.826 0.00 0.00 0.00 2.43
5543 6781 5.841957 AAAATGCTCTCTCTCTCTCTCTC 57.158 43.478 0.00 0.00 0.00 3.20
5545 6783 8.034804 AGTTTAAAAATGCTCTCTCTCTCTCTC 58.965 37.037 0.00 0.00 0.00 3.20
5546 6784 7.906327 AGTTTAAAAATGCTCTCTCTCTCTCT 58.094 34.615 0.00 0.00 0.00 3.10
5547 6785 8.546597 AAGTTTAAAAATGCTCTCTCTCTCTC 57.453 34.615 0.00 0.00 0.00 3.20
5548 6786 8.782144 CAAAGTTTAAAAATGCTCTCTCTCTCT 58.218 33.333 0.00 0.00 0.00 3.10
5549 6787 8.020244 CCAAAGTTTAAAAATGCTCTCTCTCTC 58.980 37.037 0.00 0.00 0.00 3.20
5550 6788 7.522889 GCCAAAGTTTAAAAATGCTCTCTCTCT 60.523 37.037 0.00 0.00 0.00 3.10
5551 6789 6.584184 GCCAAAGTTTAAAAATGCTCTCTCTC 59.416 38.462 0.00 0.00 0.00 3.20
5559 6797 3.058293 GGCCAGCCAAAGTTTAAAAATGC 60.058 43.478 3.12 0.00 35.81 3.56
5570 6808 1.975407 CCACTGAGGCCAGCCAAAG 60.975 63.158 12.03 10.04 44.16 2.77
5680 6942 2.558795 GAGAAAAGTGAAAGGGAAGCCC 59.441 50.000 0.00 0.00 45.90 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.