Multiple sequence alignment - TraesCS4D01G041100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G041100 chr4D 100.000 5981 0 0 1 5981 19393211 19399191 0.000000e+00 11045.0
1 TraesCS4D01G041100 chr4B 93.716 3915 162 33 1997 5880 31845836 31849697 0.000000e+00 5790.0
2 TraesCS4D01G041100 chr4B 87.030 1303 82 38 377 1619 31843955 31845230 0.000000e+00 1389.0
3 TraesCS4D01G041100 chr4B 88.722 133 6 7 1629 1752 31845288 31845420 2.890000e-33 154.0
4 TraesCS4D01G041100 chr4B 92.553 94 7 0 1747 1840 277407997 277407904 1.050000e-27 135.0
5 TraesCS4D01G041100 chr4A 94.517 1459 66 10 4413 5869 581751803 581750357 0.000000e+00 2239.0
6 TraesCS4D01G041100 chr4A 92.039 1432 81 19 2163 3578 581753934 581752520 0.000000e+00 1982.0
7 TraesCS4D01G041100 chr4A 89.277 802 38 13 491 1262 581755481 581754698 0.000000e+00 961.0
8 TraesCS4D01G041100 chr4A 80.191 732 80 33 3658 4369 581752483 581751797 6.970000e-134 488.0
9 TraesCS4D01G041100 chr4A 92.857 112 7 1 1645 1755 581754346 581754235 1.730000e-35 161.0
10 TraesCS4D01G041100 chr4A 90.678 118 6 2 5866 5981 581750289 581750175 1.040000e-32 152.0
11 TraesCS4D01G041100 chr4A 90.090 111 11 0 1 111 581756008 581755898 1.740000e-30 145.0
12 TraesCS4D01G041100 chr1D 95.946 148 5 1 189 336 48730900 48730754 7.750000e-59 239.0
13 TraesCS4D01G041100 chr5D 95.862 145 5 1 189 333 294586346 294586203 3.600000e-57 233.0
14 TraesCS4D01G041100 chr5D 94.521 146 7 1 189 334 506220917 506220773 2.170000e-54 224.0
15 TraesCS4D01G041100 chr7B 94.444 144 7 1 189 332 426632450 426632308 2.810000e-53 220.0
16 TraesCS4D01G041100 chr7B 93.750 144 8 1 189 332 426700539 426700397 1.310000e-51 215.0
17 TraesCS4D01G041100 chr7B 93.103 145 9 1 189 333 727384324 727384467 1.690000e-50 211.0
18 TraesCS4D01G041100 chr7B 87.736 106 11 2 1751 1855 740996153 740996257 8.140000e-24 122.0
19 TraesCS4D01G041100 chr7B 100.000 37 0 0 173 209 727384288 727384324 1.080000e-07 69.4
20 TraesCS4D01G041100 chr6B 94.444 144 7 1 189 332 413587534 413587392 2.810000e-53 220.0
21 TraesCS4D01G041100 chr6D 96.947 131 3 1 203 333 28063303 28063432 1.010000e-52 219.0
22 TraesCS4D01G041100 chr5B 89.024 164 18 0 170 333 508780209 508780372 2.830000e-48 204.0
23 TraesCS4D01G041100 chr5B 93.617 94 6 0 1748 1841 251577557 251577464 2.250000e-29 141.0
24 TraesCS4D01G041100 chr5B 94.444 90 5 0 1749 1838 411517289 411517378 8.080000e-29 139.0
25 TraesCS4D01G041100 chr7D 93.478 92 6 0 1750 1841 54836192 54836101 2.910000e-28 137.0
26 TraesCS4D01G041100 chr7A 92.632 95 7 0 1747 1841 58226033 58226127 2.910000e-28 137.0
27 TraesCS4D01G041100 chr1B 93.548 93 4 1 1746 1838 662552689 662552779 2.910000e-28 137.0
28 TraesCS4D01G041100 chrUn 87.736 106 12 1 1736 1841 101630783 101630887 8.140000e-24 122.0
29 TraesCS4D01G041100 chr2A 85.246 122 15 2 1747 1865 28818858 28818737 8.140000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G041100 chr4D 19393211 19399191 5980 False 11045.000000 11045 100.000000 1 5981 1 chr4D.!!$F1 5980
1 TraesCS4D01G041100 chr4B 31843955 31849697 5742 False 2444.333333 5790 89.822667 377 5880 3 chr4B.!!$F1 5503
2 TraesCS4D01G041100 chr4A 581750175 581756008 5833 True 875.428571 2239 89.949857 1 5981 7 chr4A.!!$R1 5980

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
315 338 0.045008 TAGGCCCCCACTCACCATAA 59.955 55.000 0.0 0.0 0.00 1.90 F
1394 1709 0.032678 ATCTATTGCTCCTGTCGCCG 59.967 55.000 0.0 0.0 0.00 6.46 F
1620 1944 0.541863 CAGAAATAGGTGCTCGGGGT 59.458 55.000 0.0 0.0 0.00 4.95 F
2065 2724 0.592637 TTCAACAGCAATGCCTGTCG 59.407 50.000 0.0 0.0 44.86 4.35 F
2438 3119 1.378531 TTCATGAGGCGGTACAATGC 58.621 50.000 0.0 0.0 0.00 3.56 F
3823 4520 1.079336 GGTTCGCCGCCTTAGTTCT 60.079 57.895 0.0 0.0 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2243 2923 0.179137 GCCCAAGCTAATTCAACCGC 60.179 55.000 0.00 0.0 35.5 5.68 R
2244 2924 1.173043 TGCCCAAGCTAATTCAACCG 58.827 50.000 0.00 0.0 40.8 4.44 R
2499 3180 1.211703 TGCAACTTGGAAGGACAGACA 59.788 47.619 0.00 0.0 0.0 3.41 R
3798 4495 1.660167 AAGGCGGCGAACCTTATTAC 58.340 50.000 12.98 0.0 45.8 1.89 R
4164 4880 1.005215 AGTTGGCCTAGATTGCTTGCT 59.995 47.619 3.32 0.0 0.0 3.91 R
5311 6029 0.109532 TCACAAACCATCGAAGCCCA 59.890 50.000 0.00 0.0 0.0 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.128580 CCCCAAAACCCCCACATC 57.871 61.111 0.00 0.00 0.00 3.06
47 48 2.645802 CCTAGCTTCACTACGACTCCT 58.354 52.381 0.00 0.00 0.00 3.69
60 61 1.381872 ACTCCTAGCCGTGCTCCAT 60.382 57.895 1.46 0.00 40.44 3.41
66 67 1.686325 TAGCCGTGCTCCATCCCTTC 61.686 60.000 1.46 0.00 40.44 3.46
95 96 1.451387 GATTCCCGTCGCCACCATT 60.451 57.895 0.00 0.00 0.00 3.16
160 183 2.043852 GAGCGACCCAGGAGGAGA 60.044 66.667 0.00 0.00 39.89 3.71
161 184 2.043450 AGCGACCCAGGAGGAGAG 60.043 66.667 0.00 0.00 39.89 3.20
162 185 3.151022 GCGACCCAGGAGGAGAGG 61.151 72.222 0.00 0.00 39.89 3.69
189 212 2.978824 GCAGTGGCGGACCTAGAA 59.021 61.111 0.00 0.00 36.63 2.10
190 213 1.295423 GCAGTGGCGGACCTAGAAA 59.705 57.895 0.00 0.00 36.63 2.52
191 214 0.741221 GCAGTGGCGGACCTAGAAAG 60.741 60.000 0.00 0.00 36.63 2.62
192 215 0.608640 CAGTGGCGGACCTAGAAAGT 59.391 55.000 0.00 0.00 36.63 2.66
193 216 1.822990 CAGTGGCGGACCTAGAAAGTA 59.177 52.381 0.00 0.00 36.63 2.24
194 217 2.431057 CAGTGGCGGACCTAGAAAGTAT 59.569 50.000 0.00 0.00 36.63 2.12
195 218 3.105283 AGTGGCGGACCTAGAAAGTATT 58.895 45.455 0.00 0.00 36.63 1.89
196 219 3.518303 AGTGGCGGACCTAGAAAGTATTT 59.482 43.478 0.00 0.00 37.81 1.40
197 220 3.621715 GTGGCGGACCTAGAAAGTATTTG 59.378 47.826 0.00 0.00 35.76 2.32
198 221 3.203716 GGCGGACCTAGAAAGTATTTGG 58.796 50.000 0.00 0.00 39.27 3.28
199 222 3.118519 GGCGGACCTAGAAAGTATTTGGA 60.119 47.826 0.00 0.00 39.27 3.53
200 223 4.120589 GCGGACCTAGAAAGTATTTGGAG 58.879 47.826 0.00 0.00 39.27 3.86
201 224 4.382793 GCGGACCTAGAAAGTATTTGGAGT 60.383 45.833 0.00 0.00 39.27 3.85
202 225 5.109903 CGGACCTAGAAAGTATTTGGAGTG 58.890 45.833 0.00 0.00 39.27 3.51
203 226 5.429130 GGACCTAGAAAGTATTTGGAGTGG 58.571 45.833 0.00 0.00 39.27 4.00
204 227 5.429130 GACCTAGAAAGTATTTGGAGTGGG 58.571 45.833 0.00 0.00 39.27 4.61
205 228 4.227527 ACCTAGAAAGTATTTGGAGTGGGG 59.772 45.833 0.00 0.00 39.27 4.96
206 229 3.739401 AGAAAGTATTTGGAGTGGGGG 57.261 47.619 0.00 0.00 39.27 5.40
207 230 2.100197 GAAAGTATTTGGAGTGGGGGC 58.900 52.381 0.00 0.00 39.27 5.80
208 231 1.080638 AAGTATTTGGAGTGGGGGCA 58.919 50.000 0.00 0.00 0.00 5.36
209 232 1.308877 AGTATTTGGAGTGGGGGCAT 58.691 50.000 0.00 0.00 0.00 4.40
210 233 2.498441 AGTATTTGGAGTGGGGGCATA 58.502 47.619 0.00 0.00 0.00 3.14
211 234 3.063650 AGTATTTGGAGTGGGGGCATAT 58.936 45.455 0.00 0.00 0.00 1.78
212 235 3.467103 AGTATTTGGAGTGGGGGCATATT 59.533 43.478 0.00 0.00 0.00 1.28
213 236 2.452600 TTTGGAGTGGGGGCATATTC 57.547 50.000 0.00 0.00 0.00 1.75
214 237 1.607225 TTGGAGTGGGGGCATATTCT 58.393 50.000 0.00 0.00 0.00 2.40
215 238 2.505672 TGGAGTGGGGGCATATTCTA 57.494 50.000 0.00 0.00 0.00 2.10
216 239 3.004126 TGGAGTGGGGGCATATTCTAT 57.996 47.619 0.00 0.00 0.00 1.98
217 240 4.154802 TGGAGTGGGGGCATATTCTATA 57.845 45.455 0.00 0.00 0.00 1.31
218 241 4.104086 TGGAGTGGGGGCATATTCTATAG 58.896 47.826 0.00 0.00 0.00 1.31
219 242 4.202890 TGGAGTGGGGGCATATTCTATAGA 60.203 45.833 0.00 0.00 0.00 1.98
220 243 4.783227 GGAGTGGGGGCATATTCTATAGAA 59.217 45.833 17.32 17.32 38.56 2.10
221 244 5.250774 GGAGTGGGGGCATATTCTATAGAAA 59.749 44.000 18.79 9.08 37.61 2.52
222 245 6.069381 GGAGTGGGGGCATATTCTATAGAAAT 60.069 42.308 18.79 10.79 37.61 2.17
223 246 7.348680 AGTGGGGGCATATTCTATAGAAATT 57.651 36.000 18.79 6.55 37.61 1.82
224 247 7.769652 AGTGGGGGCATATTCTATAGAAATTT 58.230 34.615 18.79 5.85 37.61 1.82
225 248 8.900802 AGTGGGGGCATATTCTATAGAAATTTA 58.099 33.333 18.79 7.87 37.61 1.40
226 249 9.528489 GTGGGGGCATATTCTATAGAAATTTAA 57.472 33.333 18.79 3.78 37.61 1.52
269 292 9.535878 TTTCCAAAAACACAAGTAAATCATACC 57.464 29.630 0.00 0.00 0.00 2.73
270 293 7.364200 TCCAAAAACACAAGTAAATCATACCG 58.636 34.615 0.00 0.00 0.00 4.02
271 294 7.228906 TCCAAAAACACAAGTAAATCATACCGA 59.771 33.333 0.00 0.00 0.00 4.69
272 295 7.863375 CCAAAAACACAAGTAAATCATACCGAA 59.137 33.333 0.00 0.00 0.00 4.30
273 296 9.239002 CAAAAACACAAGTAAATCATACCGAAA 57.761 29.630 0.00 0.00 0.00 3.46
274 297 9.974980 AAAAACACAAGTAAATCATACCGAAAT 57.025 25.926 0.00 0.00 0.00 2.17
275 298 9.974980 AAAACACAAGTAAATCATACCGAAATT 57.025 25.926 0.00 0.00 0.00 1.82
276 299 9.974980 AAACACAAGTAAATCATACCGAAATTT 57.025 25.926 0.00 0.00 0.00 1.82
277 300 9.620660 AACACAAGTAAATCATACCGAAATTTC 57.379 29.630 8.20 8.20 0.00 2.17
278 301 8.788806 ACACAAGTAAATCATACCGAAATTTCA 58.211 29.630 17.99 0.00 0.00 2.69
279 302 9.787532 CACAAGTAAATCATACCGAAATTTCAT 57.212 29.630 17.99 7.94 0.00 2.57
290 313 9.236691 CATACCGAAATTTCATATTTTCAGTGG 57.763 33.333 17.99 8.53 32.57 4.00
291 314 6.630071 ACCGAAATTTCATATTTTCAGTGGG 58.370 36.000 17.99 8.35 32.57 4.61
292 315 6.210584 ACCGAAATTTCATATTTTCAGTGGGT 59.789 34.615 17.99 8.93 32.57 4.51
293 316 6.531240 CCGAAATTTCATATTTTCAGTGGGTG 59.469 38.462 17.99 0.00 32.57 4.61
294 317 6.034898 CGAAATTTCATATTTTCAGTGGGTGC 59.965 38.462 17.99 0.00 32.57 5.01
295 318 4.799564 TTTCATATTTTCAGTGGGTGCC 57.200 40.909 0.00 0.00 0.00 5.01
296 319 3.737559 TCATATTTTCAGTGGGTGCCT 57.262 42.857 0.00 0.00 0.00 4.75
297 320 4.853468 TCATATTTTCAGTGGGTGCCTA 57.147 40.909 0.00 0.00 0.00 3.93
298 321 4.780815 TCATATTTTCAGTGGGTGCCTAG 58.219 43.478 0.00 0.00 0.00 3.02
299 322 2.514458 ATTTTCAGTGGGTGCCTAGG 57.486 50.000 3.67 3.67 0.00 3.02
300 323 0.251165 TTTTCAGTGGGTGCCTAGGC 60.251 55.000 27.71 27.71 42.35 3.93
301 324 2.137177 TTTCAGTGGGTGCCTAGGCC 62.137 60.000 30.81 20.81 41.09 5.19
302 325 4.115199 CAGTGGGTGCCTAGGCCC 62.115 72.222 30.81 27.68 45.04 5.80
308 331 3.798511 GTGCCTAGGCCCCCACTC 61.799 72.222 30.81 8.65 41.09 3.51
309 332 4.346889 TGCCTAGGCCCCCACTCA 62.347 66.667 30.81 6.69 41.09 3.41
310 333 3.798511 GCCTAGGCCCCCACTCAC 61.799 72.222 24.19 0.00 34.56 3.51
311 334 3.090532 CCTAGGCCCCCACTCACC 61.091 72.222 0.00 0.00 0.00 4.02
312 335 2.285368 CTAGGCCCCCACTCACCA 60.285 66.667 0.00 0.00 0.00 4.17
313 336 1.694169 CTAGGCCCCCACTCACCAT 60.694 63.158 0.00 0.00 0.00 3.55
314 337 0.399949 CTAGGCCCCCACTCACCATA 60.400 60.000 0.00 0.00 0.00 2.74
315 338 0.045008 TAGGCCCCCACTCACCATAA 59.955 55.000 0.00 0.00 0.00 1.90
316 339 1.076995 GGCCCCCACTCACCATAAC 60.077 63.158 0.00 0.00 0.00 1.89
317 340 1.451387 GCCCCCACTCACCATAACG 60.451 63.158 0.00 0.00 0.00 3.18
318 341 1.988015 CCCCCACTCACCATAACGT 59.012 57.895 0.00 0.00 0.00 3.99
319 342 0.392461 CCCCCACTCACCATAACGTG 60.392 60.000 0.00 0.00 34.93 4.49
327 350 3.493213 CCATAACGTGGGTTCGCC 58.507 61.111 0.00 0.00 44.79 5.54
345 368 4.589569 CCTGGGAGGGAGGAGTTT 57.410 61.111 0.00 0.00 31.48 2.66
346 369 2.792635 CCTGGGAGGGAGGAGTTTT 58.207 57.895 0.00 0.00 31.48 2.43
347 370 1.076438 CCTGGGAGGGAGGAGTTTTT 58.924 55.000 0.00 0.00 31.48 1.94
372 395 0.671251 TGCAATTTGTGAACCCGTCC 59.329 50.000 0.00 0.00 0.00 4.79
373 396 0.671251 GCAATTTGTGAACCCGTCCA 59.329 50.000 0.00 0.00 0.00 4.02
394 418 8.234546 CGTCCATTTAGTTTTGTGTATAAAGCT 58.765 33.333 0.00 0.00 35.64 3.74
414 442 4.631813 AGCTGGACGAAAGCATAACTTAAG 59.368 41.667 0.00 0.00 43.37 1.85
445 473 4.503910 TGATTTTCCAGTCCACGATACAG 58.496 43.478 0.00 0.00 0.00 2.74
468 496 3.485711 CGTGTTCGAAATGGTCATCATGG 60.486 47.826 0.00 0.00 39.71 3.66
515 747 3.054361 AGCTACAATCGTCCCTTTTCCAT 60.054 43.478 0.00 0.00 0.00 3.41
540 773 0.716108 CGGCGTGTGAAAGTGAGATC 59.284 55.000 0.00 0.00 0.00 2.75
550 783 3.056536 TGAAAGTGAGATCTCCCGTTCAG 60.057 47.826 24.68 0.00 0.00 3.02
552 785 0.179097 GTGAGATCTCCCGTTCAGCC 60.179 60.000 20.03 0.00 0.00 4.85
560 793 1.218316 CCCGTTCAGCCAGGACTAC 59.782 63.158 0.00 0.00 0.00 2.73
582 826 1.611519 TTCCATTTTGACCGTGGGAC 58.388 50.000 0.00 0.00 33.78 4.46
610 854 1.904865 ACCGGTAGAACAGTCGCCA 60.905 57.895 4.49 0.00 0.00 5.69
613 857 1.448013 GGTAGAACAGTCGCCAGCC 60.448 63.158 0.00 0.00 0.00 4.85
632 876 2.032681 AGCCCGTGAAGTTCCAGC 59.967 61.111 0.00 0.00 0.00 4.85
635 879 1.073199 CCCGTGAAGTTCCAGCCTT 59.927 57.895 0.00 0.00 0.00 4.35
636 880 0.955919 CCCGTGAAGTTCCAGCCTTC 60.956 60.000 0.00 0.00 39.01 3.46
863 1107 2.203523 TCGACCGAACCCAGTCCA 60.204 61.111 0.00 0.00 0.00 4.02
864 1108 1.833492 TCGACCGAACCCAGTCCAA 60.833 57.895 0.00 0.00 0.00 3.53
865 1109 1.666872 CGACCGAACCCAGTCCAAC 60.667 63.158 0.00 0.00 0.00 3.77
915 1159 4.152402 GTGCTCGCTTCTCACTTCATTTTA 59.848 41.667 0.00 0.00 0.00 1.52
916 1160 4.754618 TGCTCGCTTCTCACTTCATTTTAA 59.245 37.500 0.00 0.00 0.00 1.52
937 1181 8.776061 TTTAATTCTCAAAGAAAGGAAAGGGA 57.224 30.769 0.00 0.00 37.82 4.20
948 1192 6.726379 AGAAAGGAAAGGGAGAAGGATAAAG 58.274 40.000 0.00 0.00 0.00 1.85
979 1227 4.778143 AATCCACTGACGGCCGGC 62.778 66.667 31.76 30.24 0.00 6.13
994 1242 3.440415 GGCGGGGAAGAAAAGGCG 61.440 66.667 0.00 0.00 0.00 5.52
995 1243 2.359478 GCGGGGAAGAAAAGGCGA 60.359 61.111 0.00 0.00 0.00 5.54
996 1244 2.399356 GCGGGGAAGAAAAGGCGAG 61.399 63.158 0.00 0.00 0.00 5.03
997 1245 1.295423 CGGGGAAGAAAAGGCGAGA 59.705 57.895 0.00 0.00 0.00 4.04
998 1246 0.321298 CGGGGAAGAAAAGGCGAGAA 60.321 55.000 0.00 0.00 0.00 2.87
1086 1351 4.150454 CTCCTCTCCTCCCCCGCT 62.150 72.222 0.00 0.00 0.00 5.52
1118 1383 3.596214 CTCTGTTACCTGGCGTGTTTAT 58.404 45.455 0.00 0.00 0.00 1.40
1128 1393 4.023536 CCTGGCGTGTTTATTAACTGTTGT 60.024 41.667 2.69 0.00 35.24 3.32
1223 1488 2.372690 CCGCTTCGACAAGGTCACG 61.373 63.158 0.00 0.00 32.09 4.35
1243 1508 1.405526 GGATTTCGCAGGTAGCACTCA 60.406 52.381 0.00 0.00 46.13 3.41
1244 1509 1.661112 GATTTCGCAGGTAGCACTCAC 59.339 52.381 0.00 0.00 46.13 3.51
1247 1512 1.153745 CGCAGGTAGCACTCACCTC 60.154 63.158 0.00 0.00 44.81 3.85
1249 1514 1.261238 GCAGGTAGCACTCACCTCCT 61.261 60.000 0.00 0.00 44.81 3.69
1250 1515 1.960471 GCAGGTAGCACTCACCTCCTA 60.960 57.143 0.00 0.00 44.81 2.94
1251 1516 1.751924 CAGGTAGCACTCACCTCCTAC 59.248 57.143 0.00 0.00 44.81 3.18
1252 1517 1.641714 AGGTAGCACTCACCTCCTACT 59.358 52.381 0.00 0.00 43.04 2.57
1254 1519 2.427812 GGTAGCACTCACCTCCTACTTC 59.572 54.545 0.00 0.00 32.73 3.01
1255 1520 2.614134 AGCACTCACCTCCTACTTCT 57.386 50.000 0.00 0.00 0.00 2.85
1257 1522 4.048970 AGCACTCACCTCCTACTTCTTA 57.951 45.455 0.00 0.00 0.00 2.10
1258 1523 4.615513 AGCACTCACCTCCTACTTCTTAT 58.384 43.478 0.00 0.00 0.00 1.73
1259 1524 4.647399 AGCACTCACCTCCTACTTCTTATC 59.353 45.833 0.00 0.00 0.00 1.75
1264 1544 5.209659 TCACCTCCTACTTCTTATCCTTCC 58.790 45.833 0.00 0.00 0.00 3.46
1265 1545 4.345547 CACCTCCTACTTCTTATCCTTCCC 59.654 50.000 0.00 0.00 0.00 3.97
1266 1546 4.235636 ACCTCCTACTTCTTATCCTTCCCT 59.764 45.833 0.00 0.00 0.00 4.20
1269 1549 6.158871 CCTCCTACTTCTTATCCTTCCCTTTT 59.841 42.308 0.00 0.00 0.00 2.27
1270 1550 6.958767 TCCTACTTCTTATCCTTCCCTTTTG 58.041 40.000 0.00 0.00 0.00 2.44
1272 1552 7.018249 TCCTACTTCTTATCCTTCCCTTTTGTT 59.982 37.037 0.00 0.00 0.00 2.83
1274 1554 7.290110 ACTTCTTATCCTTCCCTTTTGTTTG 57.710 36.000 0.00 0.00 0.00 2.93
1281 1561 4.775253 TCCTTCCCTTTTGTTTGTTCTGTT 59.225 37.500 0.00 0.00 0.00 3.16
1291 1571 3.383185 TGTTTGTTCTGTTGGGTGAATCC 59.617 43.478 0.00 0.00 0.00 3.01
1301 1581 5.070001 TGTTGGGTGAATCCAGTTAAAGAG 58.930 41.667 0.00 0.00 38.17 2.85
1328 1638 1.554392 CGTGAGCTCGATTTCTCAGG 58.446 55.000 9.64 12.51 39.71 3.86
1354 1664 0.615850 GGAAGCTGGTCTGGCTAAGT 59.384 55.000 0.00 0.00 39.30 2.24
1369 1684 3.316868 GGCTAAGTCTACAGAGTAGCCTG 59.683 52.174 22.55 0.00 46.02 4.85
1383 1698 8.091449 ACAGAGTAGCCTGTTATAATCTATTGC 58.909 37.037 0.00 0.00 44.32 3.56
1385 1700 8.527810 AGAGTAGCCTGTTATAATCTATTGCTC 58.472 37.037 0.00 0.00 0.00 4.26
1394 1709 0.032678 ATCTATTGCTCCTGTCGCCG 59.967 55.000 0.00 0.00 0.00 6.46
1398 1713 0.889186 ATTGCTCCTGTCGCCGTTTT 60.889 50.000 0.00 0.00 0.00 2.43
1412 1727 2.227865 GCCGTTTTTCTGCCTGTCATTA 59.772 45.455 0.00 0.00 0.00 1.90
1424 1739 3.782046 CCTGTCATTAATCCGACGAACT 58.218 45.455 0.00 0.00 34.78 3.01
1425 1740 4.735578 GCCTGTCATTAATCCGACGAACTA 60.736 45.833 0.00 0.00 34.78 2.24
1426 1741 4.738740 CCTGTCATTAATCCGACGAACTAC 59.261 45.833 0.00 0.00 34.78 2.73
1427 1742 4.675510 TGTCATTAATCCGACGAACTACC 58.324 43.478 0.00 0.00 34.78 3.18
1429 1744 4.738740 GTCATTAATCCGACGAACTACCTG 59.261 45.833 0.00 0.00 0.00 4.00
1430 1745 4.400251 TCATTAATCCGACGAACTACCTGT 59.600 41.667 0.00 0.00 0.00 4.00
1431 1746 4.789012 TTAATCCGACGAACTACCTGTT 57.211 40.909 0.00 0.00 42.38 3.16
1432 1747 2.649331 ATCCGACGAACTACCTGTTG 57.351 50.000 0.00 0.00 39.30 3.33
1433 1748 0.599558 TCCGACGAACTACCTGTTGG 59.400 55.000 0.00 0.00 39.30 3.77
1434 1749 0.599558 CCGACGAACTACCTGTTGGA 59.400 55.000 0.00 0.00 39.15 3.53
1435 1750 1.668047 CCGACGAACTACCTGTTGGAC 60.668 57.143 0.00 0.00 39.15 4.02
1437 1752 0.683412 ACGAACTACCTGTTGGACCC 59.317 55.000 0.00 0.00 39.30 4.46
1438 1753 0.682852 CGAACTACCTGTTGGACCCA 59.317 55.000 0.00 0.00 39.30 4.51
1439 1754 1.278127 CGAACTACCTGTTGGACCCAT 59.722 52.381 0.00 0.00 39.30 4.00
1475 1790 9.557338 CCTACGTATAGCAATTTCTACTGATAC 57.443 37.037 0.00 0.00 0.00 2.24
1477 1792 8.179509 ACGTATAGCAATTTCTACTGATACCT 57.820 34.615 0.00 0.00 0.00 3.08
1487 1803 8.794335 ATTTCTACTGATACCTTTCCTGTTTC 57.206 34.615 0.00 0.00 0.00 2.78
1525 1845 7.151976 TCTTAATATATATGCTGTGCGTGTGT 58.848 34.615 0.00 0.00 0.00 3.72
1538 1858 1.068333 GCGTGTGTCAAGATTGCCATT 60.068 47.619 0.00 0.00 0.00 3.16
1557 1877 4.742167 CCATTTTGTTGTGCACGTCAATTA 59.258 37.500 21.16 14.93 0.00 1.40
1584 1908 3.133003 GCTGCCTGTTCATCCTAGTTAGA 59.867 47.826 0.00 0.00 0.00 2.10
1594 1918 4.721776 TCATCCTAGTTAGAAGGCAACCAT 59.278 41.667 0.00 0.00 33.84 3.55
1619 1943 0.830648 TCAGAAATAGGTGCTCGGGG 59.169 55.000 0.00 0.00 0.00 5.73
1620 1944 0.541863 CAGAAATAGGTGCTCGGGGT 59.458 55.000 0.00 0.00 0.00 4.95
1622 1946 2.368875 CAGAAATAGGTGCTCGGGGTAT 59.631 50.000 0.00 0.00 0.00 2.73
1625 1949 2.400467 ATAGGTGCTCGGGGTATCTT 57.600 50.000 0.00 0.00 0.00 2.40
1627 1951 1.067582 GGTGCTCGGGGTATCTTCG 59.932 63.158 0.00 0.00 0.00 3.79
1628 1952 1.389609 GGTGCTCGGGGTATCTTCGA 61.390 60.000 0.00 0.00 0.00 3.71
1634 1958 2.295885 TCGGGGTATCTTCGAGACTTC 58.704 52.381 0.00 0.00 0.00 3.01
1652 2027 5.087391 ACTTCGAGTATCCCTTTCCTTTC 57.913 43.478 0.00 0.00 0.00 2.62
1653 2028 4.530946 ACTTCGAGTATCCCTTTCCTTTCA 59.469 41.667 0.00 0.00 0.00 2.69
1654 2029 4.737855 TCGAGTATCCCTTTCCTTTCAG 57.262 45.455 0.00 0.00 0.00 3.02
1655 2030 4.094476 TCGAGTATCCCTTTCCTTTCAGT 58.906 43.478 0.00 0.00 0.00 3.41
1656 2031 4.081642 TCGAGTATCCCTTTCCTTTCAGTG 60.082 45.833 0.00 0.00 0.00 3.66
1657 2032 4.081642 CGAGTATCCCTTTCCTTTCAGTGA 60.082 45.833 0.00 0.00 0.00 3.41
1658 2033 5.395768 CGAGTATCCCTTTCCTTTCAGTGAT 60.396 44.000 0.00 0.00 0.00 3.06
1661 2036 5.990120 ATCCCTTTCCTTTCAGTGATTTG 57.010 39.130 0.00 0.00 0.00 2.32
1662 2037 4.803452 TCCCTTTCCTTTCAGTGATTTGT 58.197 39.130 0.00 0.00 0.00 2.83
1663 2038 4.827284 TCCCTTTCCTTTCAGTGATTTGTC 59.173 41.667 0.00 0.00 0.00 3.18
1664 2039 4.829492 CCCTTTCCTTTCAGTGATTTGTCT 59.171 41.667 0.00 0.00 0.00 3.41
1666 2041 6.442112 CCTTTCCTTTCAGTGATTTGTCTTC 58.558 40.000 0.00 0.00 0.00 2.87
1754 2136 4.142093 GGCACTTCCGTCAGGTAAATAGTA 60.142 45.833 0.00 0.00 39.05 1.82
1755 2137 4.802563 GCACTTCCGTCAGGTAAATAGTAC 59.197 45.833 0.00 0.00 39.05 2.73
1756 2138 5.393896 GCACTTCCGTCAGGTAAATAGTACT 60.394 44.000 0.00 0.00 39.05 2.73
1757 2139 6.264088 CACTTCCGTCAGGTAAATAGTACTC 58.736 44.000 0.00 0.00 39.05 2.59
1758 2140 5.359292 ACTTCCGTCAGGTAAATAGTACTCC 59.641 44.000 0.00 0.00 39.05 3.85
1759 2141 4.210331 TCCGTCAGGTAAATAGTACTCCC 58.790 47.826 0.00 0.00 39.05 4.30
1760 2142 4.079558 TCCGTCAGGTAAATAGTACTCCCT 60.080 45.833 0.00 0.00 39.05 4.20
1761 2143 4.277921 CCGTCAGGTAAATAGTACTCCCTC 59.722 50.000 0.00 0.00 0.00 4.30
1762 2144 5.131784 CGTCAGGTAAATAGTACTCCCTCT 58.868 45.833 0.00 0.00 0.00 3.69
1763 2145 5.008811 CGTCAGGTAAATAGTACTCCCTCTG 59.991 48.000 0.00 1.84 0.00 3.35
1764 2146 4.894114 TCAGGTAAATAGTACTCCCTCTGC 59.106 45.833 0.00 0.00 0.00 4.26
1765 2147 4.649674 CAGGTAAATAGTACTCCCTCTGCA 59.350 45.833 0.00 0.00 0.00 4.41
1766 2148 5.128827 CAGGTAAATAGTACTCCCTCTGCAA 59.871 44.000 0.00 0.00 0.00 4.08
1767 2149 5.724854 AGGTAAATAGTACTCCCTCTGCAAA 59.275 40.000 0.00 0.00 0.00 3.68
1768 2150 6.049790 GGTAAATAGTACTCCCTCTGCAAAG 58.950 44.000 0.00 0.00 0.00 2.77
1769 2151 6.127140 GGTAAATAGTACTCCCTCTGCAAAGA 60.127 42.308 0.00 0.00 0.00 2.52
1770 2152 6.374417 AAATAGTACTCCCTCTGCAAAGAA 57.626 37.500 0.00 0.00 0.00 2.52
1771 2153 6.374417 AATAGTACTCCCTCTGCAAAGAAA 57.626 37.500 0.00 0.00 0.00 2.52
1772 2154 4.917906 AGTACTCCCTCTGCAAAGAAAT 57.082 40.909 0.00 0.00 0.00 2.17
1773 2155 7.676683 ATAGTACTCCCTCTGCAAAGAAATA 57.323 36.000 0.00 0.00 0.00 1.40
1774 2156 6.567602 AGTACTCCCTCTGCAAAGAAATAT 57.432 37.500 0.00 0.00 0.00 1.28
1775 2157 7.676683 AGTACTCCCTCTGCAAAGAAATATA 57.323 36.000 0.00 0.00 0.00 0.86
1776 2158 8.090788 AGTACTCCCTCTGCAAAGAAATATAA 57.909 34.615 0.00 0.00 0.00 0.98
1777 2159 8.207545 AGTACTCCCTCTGCAAAGAAATATAAG 58.792 37.037 0.00 0.00 0.00 1.73
1778 2160 7.200434 ACTCCCTCTGCAAAGAAATATAAGA 57.800 36.000 0.00 0.00 0.00 2.10
1779 2161 7.810260 ACTCCCTCTGCAAAGAAATATAAGAT 58.190 34.615 0.00 0.00 0.00 2.40
1780 2162 7.936301 ACTCCCTCTGCAAAGAAATATAAGATC 59.064 37.037 0.00 0.00 0.00 2.75
1781 2163 6.931281 TCCCTCTGCAAAGAAATATAAGATCG 59.069 38.462 0.00 0.00 0.00 3.69
1782 2164 6.708054 CCCTCTGCAAAGAAATATAAGATCGT 59.292 38.462 0.00 0.00 0.00 3.73
1783 2165 7.227512 CCCTCTGCAAAGAAATATAAGATCGTT 59.772 37.037 0.00 0.00 0.00 3.85
1784 2166 8.616076 CCTCTGCAAAGAAATATAAGATCGTTT 58.384 33.333 0.00 0.00 0.00 3.60
1813 2195 9.776158 ATCACTATATTCGTGATCTAAACGATC 57.224 33.333 7.50 0.00 46.15 3.69
1833 2215 9.765795 AACGATCTTATATTTCTTTACAGAGGG 57.234 33.333 0.00 0.00 0.00 4.30
1857 2239 7.339976 GGGAGTAGTAGTAAGAACTCAGTTCAT 59.660 40.741 19.89 10.46 44.11 2.57
1868 2250 5.240403 AGAACTCAGTTCATTTTCTTGCTCC 59.760 40.000 19.89 0.00 44.11 4.70
1920 2302 6.854381 ACAAAACTTTTAATACAGCTGCGTAC 59.146 34.615 15.27 0.00 0.00 3.67
1971 2630 1.160329 ACTGTCGCTGTCCAACTTGC 61.160 55.000 0.00 0.00 0.00 4.01
2012 2671 5.465390 TCTTTTACTTCTGTGGTGAATCACG 59.535 40.000 7.35 0.00 40.31 4.35
2018 2677 3.804036 TCTGTGGTGAATCACGTTTCTT 58.196 40.909 7.35 0.00 40.31 2.52
2065 2724 0.592637 TTCAACAGCAATGCCTGTCG 59.407 50.000 0.00 0.00 44.86 4.35
2086 2745 9.577110 CTGTCGTAGTAATAGTTTATCCAAACA 57.423 33.333 3.36 0.00 45.44 2.83
2114 2773 6.483640 GCACTATCTTCGATTACCCATTCTTT 59.516 38.462 0.00 0.00 0.00 2.52
2130 2790 4.320608 TTCTTTGGTGAAAATGCCTGTC 57.679 40.909 0.00 0.00 0.00 3.51
2174 2850 7.676947 AGTTACTAAAGCATGTCTGAACCTTA 58.323 34.615 0.00 0.00 0.00 2.69
2181 2857 6.808321 AGCATGTCTGAACCTTACCTATAA 57.192 37.500 0.00 0.00 0.00 0.98
2222 2898 6.734137 TGAGTTTGATGCGTGTTTAGATTTT 58.266 32.000 0.00 0.00 0.00 1.82
2223 2899 7.199766 TGAGTTTGATGCGTGTTTAGATTTTT 58.800 30.769 0.00 0.00 0.00 1.94
2273 2953 2.761786 AGCTTGGGCATGGATGTTAT 57.238 45.000 0.00 0.00 41.70 1.89
2295 2975 1.994779 GTATTTGCAGCAATGTGGCAC 59.005 47.619 11.55 11.55 37.26 5.01
2329 3009 6.935167 TCTGCACTGTCTATGTTCATAAAGA 58.065 36.000 0.00 0.00 0.00 2.52
2428 3109 5.128919 AGATGGAAACTGTATTCATGAGGC 58.871 41.667 0.00 0.00 0.00 4.70
2438 3119 1.378531 TTCATGAGGCGGTACAATGC 58.621 50.000 0.00 0.00 0.00 3.56
2447 3128 2.226437 GGCGGTACAATGCTTATCCATG 59.774 50.000 0.00 0.00 0.00 3.66
2499 3180 7.417116 GGCATATGTCTGTTCCAATGAAATCTT 60.417 37.037 4.29 0.00 30.79 2.40
2502 3183 6.317789 TGTCTGTTCCAATGAAATCTTGTC 57.682 37.500 0.00 0.00 30.79 3.18
2506 3187 6.205464 TCTGTTCCAATGAAATCTTGTCTGTC 59.795 38.462 0.00 0.00 30.79 3.51
2507 3188 5.241506 TGTTCCAATGAAATCTTGTCTGTCC 59.758 40.000 0.00 0.00 30.79 4.02
2672 3353 6.688385 CGTGTCCATGTATTATTTTGAAGCAG 59.312 38.462 0.00 0.00 0.00 4.24
2685 3366 6.631971 TTTTGAAGCAGTGTCATCACAATA 57.368 33.333 1.36 0.00 46.01 1.90
3000 3683 2.925966 TTTTGCAATGGGGAGAGGAT 57.074 45.000 0.00 0.00 0.00 3.24
3266 3949 2.515853 TGGTTGGATAATGTGGGCCATA 59.484 45.455 10.70 7.76 31.97 2.74
3411 4094 4.877823 GGGAGGTTAGTTTATTTACCGTGG 59.122 45.833 0.00 0.00 35.80 4.94
3638 4335 2.557920 AAGCTGAGACAGTTCCAAGG 57.442 50.000 0.00 0.00 33.43 3.61
3798 4495 8.716646 TCACCACTACAACTAATATGATTGTG 57.283 34.615 8.89 0.00 37.17 3.33
3823 4520 1.079336 GGTTCGCCGCCTTAGTTCT 60.079 57.895 0.00 0.00 0.00 3.01
3933 4630 5.659079 AGACAGGGACATTACTAAAGAGAGG 59.341 44.000 0.00 0.00 0.00 3.69
4050 4749 9.394477 GCTTAGGTTTTAAGTAAAAGACATGTG 57.606 33.333 1.15 0.00 36.00 3.21
4371 5087 9.771534 AGAGTCCAAATACTTGCTTCTTATATC 57.228 33.333 0.00 0.00 0.00 1.63
4386 5102 0.393808 ATATCGTGCACCACCCAACC 60.394 55.000 12.15 0.00 0.00 3.77
4390 5106 2.197324 TGCACCACCCAACCCTTC 59.803 61.111 0.00 0.00 0.00 3.46
4426 5142 6.182627 TCTGAGCATTTCAATATGGAGTGTT 58.817 36.000 0.00 0.00 34.81 3.32
4445 5161 1.374560 TGAACAAATCCCGGCATACG 58.625 50.000 0.00 0.00 43.80 3.06
4543 5259 3.364549 TGAATGGCTTGTAATCTTGGGG 58.635 45.455 0.00 0.00 0.00 4.96
4579 5295 3.184581 CGCTCTTGCTTCTTTTCGTTAGT 59.815 43.478 0.00 0.00 36.97 2.24
4719 5435 2.611292 GTCATCTGCTGATAAGCGCTTT 59.389 45.455 30.13 16.01 35.97 3.51
4784 5500 3.942130 AGCACCATTCTTTTACAAGGC 57.058 42.857 0.00 0.00 0.00 4.35
4836 5552 1.207329 GTCGCAGAGGGGTTACTGAAT 59.793 52.381 0.00 0.00 36.95 2.57
4839 5555 2.678336 CGCAGAGGGGTTACTGAATTTC 59.322 50.000 0.00 0.00 36.38 2.17
5072 5788 4.081531 TGGGTGATTCTTTTGCCATTGATC 60.082 41.667 0.00 0.00 0.00 2.92
5255 5971 9.057089 TGAAAGTCTGAATTTTCTCTAGTTTCC 57.943 33.333 4.47 0.00 33.53 3.13
5351 6069 5.970023 GTGAAGCTTGCATGAGTTCATATTC 59.030 40.000 2.10 5.17 34.26 1.75
5380 6098 5.882557 GGATTCAGATTACAGCAAGAAGGAA 59.117 40.000 0.00 0.00 0.00 3.36
5431 6149 0.250252 TGGCAACAGAATCTGCACGA 60.250 50.000 10.62 0.00 46.17 4.35
5494 6212 0.963856 ATCTACTGACGTCCGGCACA 60.964 55.000 14.12 0.00 0.00 4.57
5558 6276 1.154016 CTGCACGACGTACTCCAGG 60.154 63.158 0.00 0.00 0.00 4.45
5909 6701 1.040339 CCTCCTTCTCCTCCTCCACG 61.040 65.000 0.00 0.00 0.00 4.94
5922 6714 2.125912 CCACGTCCCTGCGAGAAG 60.126 66.667 0.00 0.00 35.59 2.85
5936 6730 1.731720 GAGAAGGAGACACACCATGC 58.268 55.000 0.00 0.00 0.00 4.06
5956 6750 1.534175 CGTGGCTTAGCTAACGAGAGG 60.534 57.143 21.68 0.00 39.50 3.69
5957 6751 1.749634 GTGGCTTAGCTAACGAGAGGA 59.250 52.381 0.86 0.00 0.00 3.71
5958 6752 2.025155 TGGCTTAGCTAACGAGAGGAG 58.975 52.381 0.86 0.00 0.00 3.69
5970 6764 0.686224 GAGAGGAGCATGGAGGATGG 59.314 60.000 0.00 0.00 31.99 3.51
5972 6766 0.842635 GAGGAGCATGGAGGATGGTT 59.157 55.000 0.00 0.00 43.03 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 3.076104 CGGCTAGGAGTCGTAGTGA 57.924 57.895 18.52 0.00 38.73 3.41
47 48 1.686325 GAAGGGATGGAGCACGGCTA 61.686 60.000 0.00 0.00 39.88 3.93
75 76 4.137872 GGTGGCGACGGGAATCGA 62.138 66.667 0.00 0.00 45.13 3.59
169 192 3.075005 TAGGTCCGCCACTGCTCC 61.075 66.667 0.00 0.00 37.19 4.70
170 193 1.605058 TTCTAGGTCCGCCACTGCTC 61.605 60.000 0.00 0.00 37.19 4.26
171 194 1.192146 TTTCTAGGTCCGCCACTGCT 61.192 55.000 0.00 0.00 37.19 4.24
172 195 0.741221 CTTTCTAGGTCCGCCACTGC 60.741 60.000 0.00 0.00 37.19 4.40
173 196 0.608640 ACTTTCTAGGTCCGCCACTG 59.391 55.000 0.00 0.00 37.19 3.66
174 197 2.226962 TACTTTCTAGGTCCGCCACT 57.773 50.000 0.00 0.00 37.19 4.00
175 198 3.538634 AATACTTTCTAGGTCCGCCAC 57.461 47.619 0.00 0.00 37.19 5.01
176 199 3.370103 CCAAATACTTTCTAGGTCCGCCA 60.370 47.826 0.00 0.00 37.19 5.69
177 200 3.118519 TCCAAATACTTTCTAGGTCCGCC 60.119 47.826 0.00 0.00 0.00 6.13
178 201 4.120589 CTCCAAATACTTTCTAGGTCCGC 58.879 47.826 0.00 0.00 0.00 5.54
179 202 5.109903 CACTCCAAATACTTTCTAGGTCCG 58.890 45.833 0.00 0.00 0.00 4.79
180 203 5.429130 CCACTCCAAATACTTTCTAGGTCC 58.571 45.833 0.00 0.00 0.00 4.46
181 204 5.429130 CCCACTCCAAATACTTTCTAGGTC 58.571 45.833 0.00 0.00 0.00 3.85
182 205 4.227527 CCCCACTCCAAATACTTTCTAGGT 59.772 45.833 0.00 0.00 0.00 3.08
183 206 4.385310 CCCCCACTCCAAATACTTTCTAGG 60.385 50.000 0.00 0.00 0.00 3.02
184 207 4.781934 CCCCCACTCCAAATACTTTCTAG 58.218 47.826 0.00 0.00 0.00 2.43
185 208 3.053917 GCCCCCACTCCAAATACTTTCTA 60.054 47.826 0.00 0.00 0.00 2.10
186 209 2.291605 GCCCCCACTCCAAATACTTTCT 60.292 50.000 0.00 0.00 0.00 2.52
187 210 2.100197 GCCCCCACTCCAAATACTTTC 58.900 52.381 0.00 0.00 0.00 2.62
188 211 1.431243 TGCCCCCACTCCAAATACTTT 59.569 47.619 0.00 0.00 0.00 2.66
189 212 1.080638 TGCCCCCACTCCAAATACTT 58.919 50.000 0.00 0.00 0.00 2.24
190 213 1.308877 ATGCCCCCACTCCAAATACT 58.691 50.000 0.00 0.00 0.00 2.12
191 214 3.525800 ATATGCCCCCACTCCAAATAC 57.474 47.619 0.00 0.00 0.00 1.89
192 215 3.726859 AGAATATGCCCCCACTCCAAATA 59.273 43.478 0.00 0.00 0.00 1.40
193 216 2.519691 AGAATATGCCCCCACTCCAAAT 59.480 45.455 0.00 0.00 0.00 2.32
194 217 1.929494 AGAATATGCCCCCACTCCAAA 59.071 47.619 0.00 0.00 0.00 3.28
195 218 1.607225 AGAATATGCCCCCACTCCAA 58.393 50.000 0.00 0.00 0.00 3.53
196 219 2.505672 TAGAATATGCCCCCACTCCA 57.494 50.000 0.00 0.00 0.00 3.86
197 220 4.362677 TCTATAGAATATGCCCCCACTCC 58.637 47.826 0.00 0.00 0.00 3.85
198 221 6.374417 TTTCTATAGAATATGCCCCCACTC 57.626 41.667 15.82 0.00 33.54 3.51
199 222 6.977244 ATTTCTATAGAATATGCCCCCACT 57.023 37.500 15.82 0.00 33.54 4.00
200 223 9.528489 TTAAATTTCTATAGAATATGCCCCCAC 57.472 33.333 15.82 0.00 33.54 4.61
243 266 9.535878 GGTATGATTTACTTGTGTTTTTGGAAA 57.464 29.630 0.00 0.00 0.00 3.13
244 267 7.863375 CGGTATGATTTACTTGTGTTTTTGGAA 59.137 33.333 0.00 0.00 0.00 3.53
245 268 7.228906 TCGGTATGATTTACTTGTGTTTTTGGA 59.771 33.333 0.00 0.00 0.00 3.53
246 269 7.364200 TCGGTATGATTTACTTGTGTTTTTGG 58.636 34.615 0.00 0.00 0.00 3.28
247 270 8.789881 TTCGGTATGATTTACTTGTGTTTTTG 57.210 30.769 0.00 0.00 0.00 2.44
248 271 9.974980 ATTTCGGTATGATTTACTTGTGTTTTT 57.025 25.926 0.00 0.00 0.00 1.94
249 272 9.974980 AATTTCGGTATGATTTACTTGTGTTTT 57.025 25.926 0.00 0.00 0.00 2.43
250 273 9.974980 AAATTTCGGTATGATTTACTTGTGTTT 57.025 25.926 0.00 0.00 0.00 2.83
251 274 9.620660 GAAATTTCGGTATGATTTACTTGTGTT 57.379 29.630 1.68 0.00 0.00 3.32
252 275 8.788806 TGAAATTTCGGTATGATTTACTTGTGT 58.211 29.630 13.34 0.00 0.00 3.72
253 276 9.787532 ATGAAATTTCGGTATGATTTACTTGTG 57.212 29.630 13.34 0.00 0.00 3.33
268 291 6.531240 CACCCACTGAAAATATGAAATTTCGG 59.469 38.462 13.34 6.12 44.03 4.30
269 292 6.034898 GCACCCACTGAAAATATGAAATTTCG 59.965 38.462 13.34 0.00 38.16 3.46
270 293 6.313658 GGCACCCACTGAAAATATGAAATTTC 59.686 38.462 11.41 11.41 36.35 2.17
271 294 6.013466 AGGCACCCACTGAAAATATGAAATTT 60.013 34.615 0.00 0.00 0.00 1.82
272 295 5.484998 AGGCACCCACTGAAAATATGAAATT 59.515 36.000 0.00 0.00 0.00 1.82
273 296 5.025453 AGGCACCCACTGAAAATATGAAAT 58.975 37.500 0.00 0.00 0.00 2.17
274 297 4.415596 AGGCACCCACTGAAAATATGAAA 58.584 39.130 0.00 0.00 0.00 2.69
275 298 4.046286 AGGCACCCACTGAAAATATGAA 57.954 40.909 0.00 0.00 0.00 2.57
276 299 3.737559 AGGCACCCACTGAAAATATGA 57.262 42.857 0.00 0.00 0.00 2.15
277 300 3.885297 CCTAGGCACCCACTGAAAATATG 59.115 47.826 0.00 0.00 0.00 1.78
278 301 3.688414 GCCTAGGCACCCACTGAAAATAT 60.688 47.826 29.33 0.00 41.49 1.28
279 302 2.356741 GCCTAGGCACCCACTGAAAATA 60.357 50.000 29.33 0.00 41.49 1.40
280 303 1.616994 GCCTAGGCACCCACTGAAAAT 60.617 52.381 29.33 0.00 41.49 1.82
281 304 0.251165 GCCTAGGCACCCACTGAAAA 60.251 55.000 29.33 0.00 41.49 2.29
282 305 1.378762 GCCTAGGCACCCACTGAAA 59.621 57.895 29.33 0.00 41.49 2.69
283 306 2.602676 GGCCTAGGCACCCACTGAA 61.603 63.158 34.09 0.00 44.11 3.02
284 307 3.009115 GGCCTAGGCACCCACTGA 61.009 66.667 34.09 0.00 44.11 3.41
285 308 4.115199 GGGCCTAGGCACCCACTG 62.115 72.222 34.09 0.00 46.22 3.66
291 314 3.798511 GAGTGGGGGCCTAGGCAC 61.799 72.222 34.09 31.73 45.23 5.01
292 315 4.346889 TGAGTGGGGGCCTAGGCA 62.347 66.667 34.09 12.06 44.11 4.75
293 316 3.798511 GTGAGTGGGGGCCTAGGC 61.799 72.222 26.55 26.55 41.06 3.93
294 317 3.090532 GGTGAGTGGGGGCCTAGG 61.091 72.222 3.67 3.67 0.00 3.02
295 318 0.399949 TATGGTGAGTGGGGGCCTAG 60.400 60.000 0.84 0.00 0.00 3.02
296 319 0.045008 TTATGGTGAGTGGGGGCCTA 59.955 55.000 0.84 0.00 0.00 3.93
297 320 1.230149 TTATGGTGAGTGGGGGCCT 60.230 57.895 0.84 0.00 0.00 5.19
298 321 1.076995 GTTATGGTGAGTGGGGGCC 60.077 63.158 0.00 0.00 0.00 5.80
299 322 1.451387 CGTTATGGTGAGTGGGGGC 60.451 63.158 0.00 0.00 0.00 5.80
300 323 0.392461 CACGTTATGGTGAGTGGGGG 60.392 60.000 0.00 0.00 40.38 5.40
301 324 3.153024 CACGTTATGGTGAGTGGGG 57.847 57.895 0.00 0.00 40.38 4.96
328 351 1.076438 AAAAACTCCTCCCTCCCAGG 58.924 55.000 0.00 0.00 34.30 4.45
344 367 5.115480 GGTTCACAAATTGCAGAGGAAAAA 58.885 37.500 0.00 0.00 0.00 1.94
345 368 4.442753 GGGTTCACAAATTGCAGAGGAAAA 60.443 41.667 0.00 0.00 0.00 2.29
346 369 3.069443 GGGTTCACAAATTGCAGAGGAAA 59.931 43.478 0.00 0.00 0.00 3.13
347 370 2.627699 GGGTTCACAAATTGCAGAGGAA 59.372 45.455 0.00 0.00 0.00 3.36
348 371 2.238521 GGGTTCACAAATTGCAGAGGA 58.761 47.619 0.00 0.00 0.00 3.71
349 372 1.068333 CGGGTTCACAAATTGCAGAGG 60.068 52.381 0.00 0.00 0.00 3.69
350 373 1.608590 ACGGGTTCACAAATTGCAGAG 59.391 47.619 0.00 0.00 0.00 3.35
351 374 1.606668 GACGGGTTCACAAATTGCAGA 59.393 47.619 0.00 0.00 0.00 4.26
352 375 1.335872 GGACGGGTTCACAAATTGCAG 60.336 52.381 0.00 0.00 0.00 4.41
355 378 3.658757 AATGGACGGGTTCACAAATTG 57.341 42.857 0.00 0.00 0.00 2.32
362 385 4.036971 CACAAAACTAAATGGACGGGTTCA 59.963 41.667 0.00 0.00 0.00 3.18
372 395 9.341899 GTCCAGCTTTATACACAAAACTAAATG 57.658 33.333 0.00 0.00 0.00 2.32
373 396 8.234546 CGTCCAGCTTTATACACAAAACTAAAT 58.765 33.333 0.00 0.00 0.00 1.40
394 418 4.320023 TGCTTAAGTTATGCTTTCGTCCA 58.680 39.130 18.44 0.00 38.57 4.02
414 442 3.681417 GGACTGGAAAATCAAAGCAATGC 59.319 43.478 0.00 0.00 0.00 3.56
445 473 1.463056 TGATGACCATTTCGAACACGC 59.537 47.619 0.00 0.00 0.00 5.34
468 496 5.376854 AATTGTGCTAGTGTGGATTGAAC 57.623 39.130 0.00 0.00 0.00 3.18
540 773 0.970937 TAGTCCTGGCTGAACGGGAG 60.971 60.000 0.00 0.00 46.23 4.30
550 783 4.522789 TCAAAATGGAAAAGTAGTCCTGGC 59.477 41.667 0.00 0.00 36.03 4.85
552 785 5.334879 CGGTCAAAATGGAAAAGTAGTCCTG 60.335 44.000 0.00 0.00 36.03 3.86
560 793 2.625790 TCCCACGGTCAAAATGGAAAAG 59.374 45.455 0.00 0.00 35.33 2.27
582 826 0.688487 TTCTACCGGTGGTTTGGAGG 59.312 55.000 19.93 0.00 37.09 4.30
610 854 3.591254 GAACTTCACGGGCTCGGCT 62.591 63.158 12.42 0.00 41.39 5.52
613 857 1.738099 CTGGAACTTCACGGGCTCG 60.738 63.158 3.27 3.27 43.02 5.03
720 964 3.912415 CGAATGCGTGCGATGCGA 61.912 61.111 0.00 0.00 31.36 5.10
723 967 4.596180 GGGCGAATGCGTGCGATG 62.596 66.667 11.47 0.00 44.10 3.84
853 1097 3.576259 CGGGGGTTGGACTGGGTT 61.576 66.667 0.00 0.00 0.00 4.11
863 1107 1.604308 CGGGCTTTTAACGGGGGTT 60.604 57.895 0.00 0.00 0.00 4.11
864 1108 2.034532 CGGGCTTTTAACGGGGGT 59.965 61.111 0.00 0.00 0.00 4.95
865 1109 2.752640 CCGGGCTTTTAACGGGGG 60.753 66.667 0.00 0.00 43.69 5.40
915 1159 6.614657 TCTCCCTTTCCTTTCTTTGAGAATT 58.385 36.000 0.00 0.00 33.67 2.17
916 1160 6.206180 TCTCCCTTTCCTTTCTTTGAGAAT 57.794 37.500 0.00 0.00 33.67 2.40
937 1181 6.601332 TGTTGGTCTGTTTCTTTATCCTTCT 58.399 36.000 0.00 0.00 0.00 2.85
948 1192 4.338118 TCAGTGGATTTGTTGGTCTGTTTC 59.662 41.667 0.00 0.00 0.00 2.78
979 1227 0.321298 TTCTCGCCTTTTCTTCCCCG 60.321 55.000 0.00 0.00 0.00 5.73
981 1229 2.474410 TCTTCTCGCCTTTTCTTCCC 57.526 50.000 0.00 0.00 0.00 3.97
994 1242 2.354259 CAGCACTGTTCCCATCTTCTC 58.646 52.381 0.00 0.00 0.00 2.87
995 1243 1.004044 CCAGCACTGTTCCCATCTTCT 59.996 52.381 0.00 0.00 0.00 2.85
996 1244 1.003580 TCCAGCACTGTTCCCATCTTC 59.996 52.381 0.00 0.00 0.00 2.87
997 1245 1.067295 TCCAGCACTGTTCCCATCTT 58.933 50.000 0.00 0.00 0.00 2.40
998 1246 0.326264 GTCCAGCACTGTTCCCATCT 59.674 55.000 0.00 0.00 0.00 2.90
1086 1351 1.542492 GTAACAGAGGGACGGAGACA 58.458 55.000 0.00 0.00 0.00 3.41
1096 1361 0.034896 AACACGCCAGGTAACAGAGG 59.965 55.000 0.00 0.00 41.41 3.69
1118 1383 3.864243 ACACCAGAACGACAACAGTTAA 58.136 40.909 0.00 0.00 31.14 2.01
1128 1393 1.474320 CCACCAAGAACACCAGAACGA 60.474 52.381 0.00 0.00 0.00 3.85
1223 1488 1.291132 GAGTGCTACCTGCGAAATCC 58.709 55.000 0.00 0.00 46.63 3.01
1243 1508 4.235636 AGGGAAGGATAAGAAGTAGGAGGT 59.764 45.833 0.00 0.00 0.00 3.85
1244 1509 4.821940 AGGGAAGGATAAGAAGTAGGAGG 58.178 47.826 0.00 0.00 0.00 4.30
1247 1512 6.722328 ACAAAAGGGAAGGATAAGAAGTAGG 58.278 40.000 0.00 0.00 0.00 3.18
1249 1514 8.002459 ACAAACAAAAGGGAAGGATAAGAAGTA 58.998 33.333 0.00 0.00 0.00 2.24
1250 1515 6.839134 ACAAACAAAAGGGAAGGATAAGAAGT 59.161 34.615 0.00 0.00 0.00 3.01
1251 1516 7.290110 ACAAACAAAAGGGAAGGATAAGAAG 57.710 36.000 0.00 0.00 0.00 2.85
1252 1517 7.563556 AGAACAAACAAAAGGGAAGGATAAGAA 59.436 33.333 0.00 0.00 0.00 2.52
1254 1519 7.147976 CAGAACAAACAAAAGGGAAGGATAAG 58.852 38.462 0.00 0.00 0.00 1.73
1255 1520 6.609616 ACAGAACAAACAAAAGGGAAGGATAA 59.390 34.615 0.00 0.00 0.00 1.75
1257 1522 4.962362 ACAGAACAAACAAAAGGGAAGGAT 59.038 37.500 0.00 0.00 0.00 3.24
1258 1523 4.349365 ACAGAACAAACAAAAGGGAAGGA 58.651 39.130 0.00 0.00 0.00 3.36
1259 1524 4.736126 ACAGAACAAACAAAAGGGAAGG 57.264 40.909 0.00 0.00 0.00 3.46
1264 1544 3.932089 CACCCAACAGAACAAACAAAAGG 59.068 43.478 0.00 0.00 0.00 3.11
1265 1545 4.815269 TCACCCAACAGAACAAACAAAAG 58.185 39.130 0.00 0.00 0.00 2.27
1266 1546 4.873746 TCACCCAACAGAACAAACAAAA 57.126 36.364 0.00 0.00 0.00 2.44
1269 1549 3.383185 GGATTCACCCAACAGAACAAACA 59.617 43.478 0.00 0.00 0.00 2.83
1270 1550 3.383185 TGGATTCACCCAACAGAACAAAC 59.617 43.478 0.00 0.00 38.00 2.93
1272 1552 3.221771 CTGGATTCACCCAACAGAACAA 58.778 45.455 0.00 0.00 35.47 2.83
1274 1554 2.863809 ACTGGATTCACCCAACAGAAC 58.136 47.619 0.00 0.00 35.47 3.01
1281 1561 4.506625 CCACTCTTTAACTGGATTCACCCA 60.507 45.833 0.00 0.00 38.00 4.51
1291 1571 3.005472 TCACGGACTCCACTCTTTAACTG 59.995 47.826 0.00 0.00 0.00 3.16
1301 1581 1.658686 ATCGAGCTCACGGACTCCAC 61.659 60.000 15.40 0.00 0.00 4.02
1310 1620 1.285578 GCCTGAGAAATCGAGCTCAC 58.714 55.000 15.40 0.00 36.31 3.51
1369 1684 5.348997 GGCGACAGGAGCAATAGATTATAAC 59.651 44.000 0.00 0.00 36.08 1.89
1383 1698 0.512952 CAGAAAAACGGCGACAGGAG 59.487 55.000 16.62 0.00 0.00 3.69
1385 1700 1.082104 GCAGAAAAACGGCGACAGG 60.082 57.895 16.62 0.00 0.00 4.00
1394 1709 5.095490 CGGATTAATGACAGGCAGAAAAAC 58.905 41.667 0.00 0.00 0.00 2.43
1398 1713 3.531538 GTCGGATTAATGACAGGCAGAA 58.468 45.455 0.00 0.00 35.20 3.02
1412 1727 2.353406 CCAACAGGTAGTTCGTCGGATT 60.353 50.000 0.00 0.00 38.74 3.01
1424 1739 1.910671 GTGGTATGGGTCCAACAGGTA 59.089 52.381 0.00 0.00 36.68 3.08
1425 1740 0.696501 GTGGTATGGGTCCAACAGGT 59.303 55.000 0.00 0.00 36.68 4.00
1426 1741 0.695924 TGTGGTATGGGTCCAACAGG 59.304 55.000 0.00 0.00 36.68 4.00
1427 1742 2.026356 TGATGTGGTATGGGTCCAACAG 60.026 50.000 0.00 0.00 36.68 3.16
1429 1744 2.365582 GTGATGTGGTATGGGTCCAAC 58.634 52.381 0.00 0.00 36.68 3.77
1430 1745 1.283613 GGTGATGTGGTATGGGTCCAA 59.716 52.381 0.00 0.00 36.68 3.53
1431 1746 0.916086 GGTGATGTGGTATGGGTCCA 59.084 55.000 0.00 0.00 0.00 4.02
1432 1747 1.213296 AGGTGATGTGGTATGGGTCC 58.787 55.000 0.00 0.00 0.00 4.46
1433 1748 2.223971 CGTAGGTGATGTGGTATGGGTC 60.224 54.545 0.00 0.00 0.00 4.46
1434 1749 1.760613 CGTAGGTGATGTGGTATGGGT 59.239 52.381 0.00 0.00 0.00 4.51
1435 1750 1.760613 ACGTAGGTGATGTGGTATGGG 59.239 52.381 0.00 0.00 0.00 4.00
1437 1752 5.048294 TGCTATACGTAGGTGATGTGGTATG 60.048 44.000 0.08 0.00 0.00 2.39
1438 1753 5.074804 TGCTATACGTAGGTGATGTGGTAT 58.925 41.667 0.08 0.00 0.00 2.73
1439 1754 4.463070 TGCTATACGTAGGTGATGTGGTA 58.537 43.478 0.08 0.00 0.00 3.25
1475 1790 3.251004 CCGAGAAACAGAAACAGGAAAGG 59.749 47.826 0.00 0.00 0.00 3.11
1477 1792 4.145365 TCCGAGAAACAGAAACAGGAAA 57.855 40.909 0.00 0.00 0.00 3.13
1480 1795 4.319177 AGATTCCGAGAAACAGAAACAGG 58.681 43.478 0.00 0.00 0.00 4.00
1525 1845 3.808726 GCACAACAAAATGGCAATCTTGA 59.191 39.130 11.94 0.00 0.00 3.02
1538 1858 5.236655 TCTTAATTGACGTGCACAACAAA 57.763 34.783 22.83 10.65 0.00 2.83
1557 1877 1.284198 AGGATGAACAGGCAGCATCTT 59.716 47.619 0.00 0.00 38.69 2.40
1584 1908 5.612725 TTTCTGAAGAAAATGGTTGCCTT 57.387 34.783 3.00 0.00 40.68 4.35
1594 1918 4.695455 CCGAGCACCTATTTCTGAAGAAAA 59.305 41.667 9.42 0.04 45.81 2.29
1627 1951 3.955551 AGGAAAGGGATACTCGAAGTCTC 59.044 47.826 0.00 0.00 0.00 3.36
1628 1952 3.983821 AGGAAAGGGATACTCGAAGTCT 58.016 45.455 0.00 0.00 0.00 3.24
1629 1953 4.739587 AAGGAAAGGGATACTCGAAGTC 57.260 45.455 0.00 0.00 0.00 3.01
1630 1954 4.530946 TGAAAGGAAAGGGATACTCGAAGT 59.469 41.667 0.00 0.00 0.00 3.01
1631 1955 5.086104 TGAAAGGAAAGGGATACTCGAAG 57.914 43.478 0.00 0.00 0.00 3.79
1632 1956 4.530946 ACTGAAAGGAAAGGGATACTCGAA 59.469 41.667 0.00 0.00 39.30 3.71
1634 1958 4.081642 TCACTGAAAGGAAAGGGATACTCG 60.082 45.833 0.00 0.00 39.30 4.18
1635 1959 5.422214 TCACTGAAAGGAAAGGGATACTC 57.578 43.478 0.00 0.00 39.30 2.59
1638 2013 6.552008 ACAAATCACTGAAAGGAAAGGGATA 58.448 36.000 0.00 0.00 35.46 2.59
1754 2136 7.200434 TCTTATATTTCTTTGCAGAGGGAGT 57.800 36.000 4.15 0.00 0.00 3.85
1755 2137 7.117523 CGATCTTATATTTCTTTGCAGAGGGAG 59.882 40.741 4.15 0.00 0.00 4.30
1756 2138 6.931281 CGATCTTATATTTCTTTGCAGAGGGA 59.069 38.462 4.15 0.00 0.00 4.20
1757 2139 6.708054 ACGATCTTATATTTCTTTGCAGAGGG 59.292 38.462 4.15 0.00 0.00 4.30
1758 2140 7.721286 ACGATCTTATATTTCTTTGCAGAGG 57.279 36.000 4.15 0.00 0.00 3.69
1807 2189 9.765795 CCCTCTGTAAAGAAATATAAGATCGTT 57.234 33.333 0.00 0.00 0.00 3.85
1808 2190 9.144298 TCCCTCTGTAAAGAAATATAAGATCGT 57.856 33.333 0.00 0.00 0.00 3.73
1809 2191 9.632807 CTCCCTCTGTAAAGAAATATAAGATCG 57.367 37.037 0.00 0.00 0.00 3.69
1816 2198 9.939424 ACTACTACTCCCTCTGTAAAGAAATAT 57.061 33.333 0.00 0.00 0.00 1.28
1818 2200 9.765295 TTACTACTACTCCCTCTGTAAAGAAAT 57.235 33.333 0.00 0.00 0.00 2.17
1819 2201 9.240734 CTTACTACTACTCCCTCTGTAAAGAAA 57.759 37.037 0.00 0.00 0.00 2.52
1820 2202 8.609483 TCTTACTACTACTCCCTCTGTAAAGAA 58.391 37.037 0.00 0.00 0.00 2.52
1821 2203 8.155620 TCTTACTACTACTCCCTCTGTAAAGA 57.844 38.462 0.00 0.00 0.00 2.52
1822 2204 8.676401 GTTCTTACTACTACTCCCTCTGTAAAG 58.324 40.741 0.00 0.00 0.00 1.85
1823 2205 8.389366 AGTTCTTACTACTACTCCCTCTGTAAA 58.611 37.037 0.00 0.00 31.21 2.01
1824 2206 7.926705 AGTTCTTACTACTACTCCCTCTGTAA 58.073 38.462 0.00 0.00 31.21 2.41
1825 2207 7.181665 TGAGTTCTTACTACTACTCCCTCTGTA 59.818 40.741 0.00 0.00 36.94 2.74
1826 2208 6.012683 TGAGTTCTTACTACTACTCCCTCTGT 60.013 42.308 0.00 0.00 36.94 3.41
1827 2209 6.416415 TGAGTTCTTACTACTACTCCCTCTG 58.584 44.000 0.00 0.00 36.94 3.35
1828 2210 6.216046 ACTGAGTTCTTACTACTACTCCCTCT 59.784 42.308 0.00 0.00 36.94 3.69
1829 2211 6.417258 ACTGAGTTCTTACTACTACTCCCTC 58.583 44.000 0.00 0.00 36.94 4.30
1830 2212 6.391479 ACTGAGTTCTTACTACTACTCCCT 57.609 41.667 0.00 0.00 36.94 4.20
1831 2213 6.658391 TGAACTGAGTTCTTACTACTACTCCC 59.342 42.308 24.09 0.00 42.39 4.30
1832 2214 7.684937 TGAACTGAGTTCTTACTACTACTCC 57.315 40.000 24.09 0.00 42.39 3.85
1857 2239 4.966965 TTACAACAACGGAGCAAGAAAA 57.033 36.364 0.00 0.00 0.00 2.29
1861 2243 3.684103 TGTTTACAACAACGGAGCAAG 57.316 42.857 0.00 0.00 38.72 4.01
1864 2246 3.250040 AGTCATGTTTACAACAACGGAGC 59.750 43.478 0.00 0.00 45.86 4.70
1868 2250 5.403897 ACAGAGTCATGTTTACAACAACG 57.596 39.130 0.00 0.00 45.86 4.10
1895 2277 5.827666 ACGCAGCTGTATTAAAAGTTTTGT 58.172 33.333 16.64 2.62 0.00 2.83
1900 2282 6.548441 TTTGTACGCAGCTGTATTAAAAGT 57.452 33.333 16.64 5.68 0.00 2.66
1948 2330 1.145803 GTTGGACAGCGACAGTAACC 58.854 55.000 0.00 0.00 0.00 2.85
1951 2333 1.872237 GCAAGTTGGACAGCGACAGTA 60.872 52.381 4.75 0.00 0.00 2.74
1953 2335 0.882042 AGCAAGTTGGACAGCGACAG 60.882 55.000 4.75 0.00 0.00 3.51
1992 2651 4.330944 ACGTGATTCACCACAGAAGTAA 57.669 40.909 11.12 0.00 36.89 2.24
1996 2655 3.804036 AGAAACGTGATTCACCACAGAA 58.196 40.909 11.12 0.00 36.89 3.02
1998 2657 4.552166 AAAGAAACGTGATTCACCACAG 57.448 40.909 11.12 0.00 36.89 3.66
2000 2659 5.229260 GTCAAAAAGAAACGTGATTCACCAC 59.771 40.000 11.12 1.09 0.00 4.16
2036 2695 5.163933 GGCATTGCTGTTGAACATATGTTTG 60.164 40.000 21.63 13.27 38.56 2.93
2065 2724 9.158233 TGCAGTGTTTGGATAAACTATTACTAC 57.842 33.333 4.76 0.00 45.06 2.73
2086 2745 3.704566 TGGGTAATCGAAGATAGTGCAGT 59.295 43.478 0.00 0.00 45.12 4.40
2114 2773 1.956043 GCGACAGGCATTTTCACCA 59.044 52.632 0.00 0.00 42.87 4.17
2174 2850 8.692710 TCATGACAACTCTAACGATTTATAGGT 58.307 33.333 0.00 0.00 0.00 3.08
2181 2857 6.929049 TCAAACTCATGACAACTCTAACGATT 59.071 34.615 0.00 0.00 0.00 3.34
2223 2899 3.697045 CGCAATACCAGGGATGGTAAAAA 59.303 43.478 10.95 0.00 46.27 1.94
2224 2900 3.283751 CGCAATACCAGGGATGGTAAAA 58.716 45.455 10.95 0.00 46.27 1.52
2242 2922 1.173043 CCCAAGCTAATTCAACCGCA 58.827 50.000 0.00 0.00 0.00 5.69
2243 2923 0.179137 GCCCAAGCTAATTCAACCGC 60.179 55.000 0.00 0.00 35.50 5.68
2244 2924 1.173043 TGCCCAAGCTAATTCAACCG 58.827 50.000 0.00 0.00 40.80 4.44
2245 2925 2.159057 CCATGCCCAAGCTAATTCAACC 60.159 50.000 0.00 0.00 40.80 3.77
2273 2953 2.036862 TGCCACATTGCTGCAAATACAA 59.963 40.909 20.06 1.21 30.85 2.41
2335 3015 9.733556 TGTAACATGTAAGTGGTAAGATGATTT 57.266 29.630 0.00 0.00 0.00 2.17
2428 3109 2.226437 GGCATGGATAAGCATTGTACCG 59.774 50.000 0.00 0.00 0.00 4.02
2460 3141 4.453478 AGACATATGCCGATGCTGTATTTG 59.547 41.667 1.58 0.00 38.71 2.32
2499 3180 1.211703 TGCAACTTGGAAGGACAGACA 59.788 47.619 0.00 0.00 0.00 3.41
2502 3183 2.951642 TCTTTGCAACTTGGAAGGACAG 59.048 45.455 0.00 0.00 29.57 3.51
2506 3187 3.118811 TGGTTTCTTTGCAACTTGGAAGG 60.119 43.478 0.00 0.00 0.00 3.46
2507 3188 3.865164 GTGGTTTCTTTGCAACTTGGAAG 59.135 43.478 0.00 0.00 0.00 3.46
2685 3366 9.244799 GAAATGGACGAATTTCTTAAACAAACT 57.755 29.630 12.52 0.00 41.40 2.66
2699 3380 5.817816 GGTCTATGTTCAGAAATGGACGAAT 59.182 40.000 11.85 0.00 35.70 3.34
2885 3567 6.321181 ACTCAGGCAACAGATGTCTTTAAAAA 59.679 34.615 0.00 0.00 42.83 1.94
2890 3573 3.181451 TGACTCAGGCAACAGATGTCTTT 60.181 43.478 0.00 0.00 42.83 2.52
3000 3683 2.095213 GCGCATCTCATCAAACCGTTTA 59.905 45.455 0.30 0.00 0.00 2.01
3054 3737 8.816640 CATAAGTTGCAAAAGTTACCTGAAAT 57.183 30.769 0.00 0.00 0.00 2.17
3266 3949 2.993853 GCTTCCACAGCTAGCCCT 59.006 61.111 12.13 0.00 46.27 5.19
3582 4279 4.219919 TCAATCACCGATACCAGGATACA 58.780 43.478 0.00 0.00 41.41 2.29
3638 4335 8.794335 AGGTCTGTTTAATTTGGTATCTCTTC 57.206 34.615 0.00 0.00 0.00 2.87
3798 4495 1.660167 AAGGCGGCGAACCTTATTAC 58.340 50.000 12.98 0.00 45.80 1.89
3933 4630 9.507329 TTTCCTATTATTCTGAGCAATATGTCC 57.493 33.333 0.00 0.00 0.00 4.02
4050 4749 4.584327 ACTAAATTTGAACACCACCAGC 57.416 40.909 0.00 0.00 0.00 4.85
4162 4878 1.466856 TGGCCTAGATTGCTTGCTTG 58.533 50.000 3.32 0.00 0.00 4.01
4163 4879 1.821136 GTTGGCCTAGATTGCTTGCTT 59.179 47.619 3.32 0.00 0.00 3.91
4164 4880 1.005215 AGTTGGCCTAGATTGCTTGCT 59.995 47.619 3.32 0.00 0.00 3.91
4165 4881 1.467920 AGTTGGCCTAGATTGCTTGC 58.532 50.000 3.32 0.00 0.00 4.01
4355 5071 5.047847 GGTGCACGATATAAGAAGCAAGTA 58.952 41.667 11.45 0.00 33.37 2.24
4371 5087 4.579384 AGGGTTGGGTGGTGCACG 62.579 66.667 11.45 0.00 34.83 5.34
4426 5142 1.374560 CGTATGCCGGGATTTGTTCA 58.625 50.000 15.79 0.00 0.00 3.18
4445 5161 5.122869 TCTGCATCAGATTAAACTGTCAAGC 59.877 40.000 11.97 11.61 35.39 4.01
4543 5259 1.522580 GAGCGTCAGGAAGATGGGC 60.523 63.158 0.00 0.00 33.68 5.36
4579 5295 1.289160 CCTCAAGAAGTGGGATCCCA 58.711 55.000 30.62 30.62 45.02 4.37
4719 5435 1.481871 GGTATTCCTCAGACCGACCA 58.518 55.000 0.00 0.00 0.00 4.02
4780 5496 1.773653 GAGAGATCTGGGAATGGCCTT 59.226 52.381 3.32 0.00 36.66 4.35
4784 5500 1.063183 GGGGAGAGATCTGGGAATGG 58.937 60.000 0.00 0.00 0.00 3.16
5072 5788 1.228124 TTCACCGCAACCCCTTGAG 60.228 57.895 0.00 0.00 0.00 3.02
5083 5799 2.747446 ACATATGGACAAACTTCACCGC 59.253 45.455 7.80 0.00 0.00 5.68
5113 5829 5.178096 TCTATGCTTTTGAACATCCTGGA 57.822 39.130 0.00 0.00 0.00 3.86
5295 6013 7.175797 TCGAAGCCCATTAAGAGATAGATAGA 58.824 38.462 0.00 0.00 0.00 1.98
5296 6014 7.397892 TCGAAGCCCATTAAGAGATAGATAG 57.602 40.000 0.00 0.00 0.00 2.08
5297 6015 7.147828 CCATCGAAGCCCATTAAGAGATAGATA 60.148 40.741 0.00 0.00 0.00 1.98
5300 6018 5.174395 CCATCGAAGCCCATTAAGAGATAG 58.826 45.833 0.00 0.00 0.00 2.08
5302 6020 3.392616 ACCATCGAAGCCCATTAAGAGAT 59.607 43.478 0.00 0.00 0.00 2.75
5303 6021 2.771943 ACCATCGAAGCCCATTAAGAGA 59.228 45.455 0.00 0.00 0.00 3.10
5304 6022 3.199880 ACCATCGAAGCCCATTAAGAG 57.800 47.619 0.00 0.00 0.00 2.85
5305 6023 3.644966 AACCATCGAAGCCCATTAAGA 57.355 42.857 0.00 0.00 0.00 2.10
5306 6024 3.443681 ACAAACCATCGAAGCCCATTAAG 59.556 43.478 0.00 0.00 0.00 1.85
5307 6025 3.192422 CACAAACCATCGAAGCCCATTAA 59.808 43.478 0.00 0.00 0.00 1.40
5308 6026 2.752354 CACAAACCATCGAAGCCCATTA 59.248 45.455 0.00 0.00 0.00 1.90
5309 6027 1.545582 CACAAACCATCGAAGCCCATT 59.454 47.619 0.00 0.00 0.00 3.16
5310 6028 1.176527 CACAAACCATCGAAGCCCAT 58.823 50.000 0.00 0.00 0.00 4.00
5311 6029 0.109532 TCACAAACCATCGAAGCCCA 59.890 50.000 0.00 0.00 0.00 5.36
5351 6069 6.053650 TCTTGCTGTAATCTGAATCCTGATG 58.946 40.000 0.00 0.00 32.31 3.07
5404 6122 4.796946 GCAGATTCTGTTGCCATGTCAAAA 60.797 41.667 14.90 0.00 34.28 2.44
5431 6149 1.816224 AGTTTGCGTTGGACAACACTT 59.184 42.857 14.74 0.00 41.20 3.16
5445 6163 5.221880 TCAACATATGCTGTTTCAGTTTGC 58.778 37.500 1.58 0.00 45.98 3.68
5466 6184 4.691216 CGGACGTCAGTAGATAGATGATCA 59.309 45.833 18.91 0.00 36.98 2.92
5621 6339 4.549516 GTCGTACCGGCGAGCCTC 62.550 72.222 9.30 0.00 41.85 4.70
5861 6582 1.295792 CCAATGGAATCCGGTACACG 58.704 55.000 0.00 0.00 43.80 4.49
5896 6688 2.239439 AGGGACGTGGAGGAGGAGA 61.239 63.158 0.00 0.00 0.00 3.71
5909 6701 1.251527 TGTCTCCTTCTCGCAGGGAC 61.252 60.000 0.00 0.00 35.90 4.46
5922 6714 2.034879 CCACGCATGGTGTGTCTCC 61.035 63.158 8.85 0.00 45.52 3.71
5936 6730 1.534175 CCTCTCGTTAGCTAAGCCACG 60.534 57.143 6.38 7.92 37.17 4.94
5956 6750 5.416952 CCATTAATAACCATCCTCCATGCTC 59.583 44.000 0.00 0.00 0.00 4.26
5957 6751 5.327732 CCATTAATAACCATCCTCCATGCT 58.672 41.667 0.00 0.00 0.00 3.79
5958 6752 5.649782 CCATTAATAACCATCCTCCATGC 57.350 43.478 0.00 0.00 0.00 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.