Multiple sequence alignment - TraesCS4D01G041000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G041000 chr4D 100.000 3465 0 0 1 3465 19338114 19341578 0.000000e+00 6399.0
1 TraesCS4D01G041000 chr4D 96.782 808 24 2 2659 3465 257913547 257912741 0.000000e+00 1347.0
2 TraesCS4D01G041000 chr4D 87.758 678 75 7 229 902 449386161 449386834 0.000000e+00 785.0
3 TraesCS4D01G041000 chr4D 97.561 82 2 0 2578 2659 486563619 486563538 1.300000e-29 141.0
4 TraesCS4D01G041000 chr4D 97.561 82 2 0 2578 2659 489511132 489511213 1.300000e-29 141.0
5 TraesCS4D01G041000 chr4B 93.823 1538 80 12 919 2450 31711529 31713057 0.000000e+00 2300.0
6 TraesCS4D01G041000 chr4B 93.220 59 4 0 2478 2536 31713056 31713114 1.710000e-13 87.9
7 TraesCS4D01G041000 chr4A 90.805 1566 104 28 914 2444 581761215 581759655 0.000000e+00 2058.0
8 TraesCS4D01G041000 chr4A 97.274 807 21 1 2660 3465 690127240 690128046 0.000000e+00 1367.0
9 TraesCS4D01G041000 chr4A 83.984 743 102 11 1684 2425 395311038 395310312 0.000000e+00 697.0
10 TraesCS4D01G041000 chr4A 82.297 740 114 13 1684 2422 394855519 394856242 2.940000e-175 625.0
11 TraesCS4D01G041000 chr4A 91.011 178 16 0 9 186 581773274 581773097 1.240000e-59 241.0
12 TraesCS4D01G041000 chr7A 95.117 901 24 3 2582 3465 119611245 119612142 0.000000e+00 1402.0
13 TraesCS4D01G041000 chr7A 90.698 86 8 0 1576 1661 61511020 61510935 7.860000e-22 115.0
14 TraesCS4D01G041000 chr1A 94.989 898 23 8 2589 3465 143803425 143802529 0.000000e+00 1389.0
15 TraesCS4D01G041000 chr1A 94.444 90 5 0 2572 2661 301159558 301159647 4.660000e-29 139.0
16 TraesCS4D01G041000 chr3D 97.649 808 18 1 2659 3465 101710477 101711284 0.000000e+00 1386.0
17 TraesCS4D01G041000 chr3D 97.041 811 20 3 2659 3465 357080659 357079849 0.000000e+00 1362.0
18 TraesCS4D01G041000 chr3D 88.507 670 69 5 237 903 24569045 24569709 0.000000e+00 804.0
19 TraesCS4D01G041000 chr3D 88.306 667 70 5 240 903 300618052 300618713 0.000000e+00 793.0
20 TraesCS4D01G041000 chr5D 97.150 807 20 3 2660 3465 553985733 553984929 0.000000e+00 1360.0
21 TraesCS4D01G041000 chr5D 98.765 81 1 0 2579 2659 553985870 553985790 1.000000e-30 145.0
22 TraesCS4D01G041000 chr7D 97.358 795 14 3 2672 3465 521760168 521760956 0.000000e+00 1345.0
23 TraesCS4D01G041000 chr7D 88.609 676 69 5 231 903 475154726 475155396 0.000000e+00 815.0
24 TraesCS4D01G041000 chr7D 98.718 78 1 0 2582 2659 521760033 521760110 4.660000e-29 139.0
25 TraesCS4D01G041000 chr1D 96.658 808 24 2 2659 3465 399695935 399696740 0.000000e+00 1339.0
26 TraesCS4D01G041000 chr1D 88.358 670 69 6 237 903 466406461 466407124 0.000000e+00 797.0
27 TraesCS4D01G041000 chr1D 98.718 78 1 0 2582 2659 378952115 378952038 4.660000e-29 139.0
28 TraesCS4D01G041000 chr7B 89.752 644 61 3 260 903 380072675 380073313 0.000000e+00 819.0
29 TraesCS4D01G041000 chr5B 89.441 644 63 3 260 903 710236263 710235625 0.000000e+00 808.0
30 TraesCS4D01G041000 chr6B 89.286 644 64 3 260 903 61211551 61212189 0.000000e+00 802.0
31 TraesCS4D01G041000 chrUn 89.130 644 65 3 260 903 136394701 136395339 0.000000e+00 797.0
32 TraesCS4D01G041000 chr6A 83.243 740 106 14 1684 2422 279293064 279293786 0.000000e+00 664.0
33 TraesCS4D01G041000 chr2A 83.176 743 108 13 1684 2425 730141719 730140993 0.000000e+00 664.0
34 TraesCS4D01G041000 chr2A 87.417 151 7 1 2579 2729 686794888 686795026 2.770000e-36 163.0
35 TraesCS4D01G041000 chr6D 98.718 78 1 0 2582 2659 404616526 404616449 4.660000e-29 139.0
36 TraesCS4D01G041000 chr3B 97.561 82 1 1 2579 2659 405405341 405405422 4.660000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G041000 chr4D 19338114 19341578 3464 False 6399.00 6399 100.0000 1 3465 1 chr4D.!!$F1 3464
1 TraesCS4D01G041000 chr4D 257912741 257913547 806 True 1347.00 1347 96.7820 2659 3465 1 chr4D.!!$R1 806
2 TraesCS4D01G041000 chr4D 449386161 449386834 673 False 785.00 785 87.7580 229 902 1 chr4D.!!$F2 673
3 TraesCS4D01G041000 chr4B 31711529 31713114 1585 False 1193.95 2300 93.5215 919 2536 2 chr4B.!!$F1 1617
4 TraesCS4D01G041000 chr4A 581759655 581761215 1560 True 2058.00 2058 90.8050 914 2444 1 chr4A.!!$R2 1530
5 TraesCS4D01G041000 chr4A 690127240 690128046 806 False 1367.00 1367 97.2740 2660 3465 1 chr4A.!!$F2 805
6 TraesCS4D01G041000 chr4A 395310312 395311038 726 True 697.00 697 83.9840 1684 2425 1 chr4A.!!$R1 741
7 TraesCS4D01G041000 chr4A 394855519 394856242 723 False 625.00 625 82.2970 1684 2422 1 chr4A.!!$F1 738
8 TraesCS4D01G041000 chr7A 119611245 119612142 897 False 1402.00 1402 95.1170 2582 3465 1 chr7A.!!$F1 883
9 TraesCS4D01G041000 chr1A 143802529 143803425 896 True 1389.00 1389 94.9890 2589 3465 1 chr1A.!!$R1 876
10 TraesCS4D01G041000 chr3D 101710477 101711284 807 False 1386.00 1386 97.6490 2659 3465 1 chr3D.!!$F2 806
11 TraesCS4D01G041000 chr3D 357079849 357080659 810 True 1362.00 1362 97.0410 2659 3465 1 chr3D.!!$R1 806
12 TraesCS4D01G041000 chr3D 24569045 24569709 664 False 804.00 804 88.5070 237 903 1 chr3D.!!$F1 666
13 TraesCS4D01G041000 chr3D 300618052 300618713 661 False 793.00 793 88.3060 240 903 1 chr3D.!!$F3 663
14 TraesCS4D01G041000 chr5D 553984929 553985870 941 True 752.50 1360 97.9575 2579 3465 2 chr5D.!!$R1 886
15 TraesCS4D01G041000 chr7D 475154726 475155396 670 False 815.00 815 88.6090 231 903 1 chr7D.!!$F1 672
16 TraesCS4D01G041000 chr7D 521760033 521760956 923 False 742.00 1345 98.0380 2582 3465 2 chr7D.!!$F2 883
17 TraesCS4D01G041000 chr1D 399695935 399696740 805 False 1339.00 1339 96.6580 2659 3465 1 chr1D.!!$F1 806
18 TraesCS4D01G041000 chr1D 466406461 466407124 663 False 797.00 797 88.3580 237 903 1 chr1D.!!$F2 666
19 TraesCS4D01G041000 chr7B 380072675 380073313 638 False 819.00 819 89.7520 260 903 1 chr7B.!!$F1 643
20 TraesCS4D01G041000 chr5B 710235625 710236263 638 True 808.00 808 89.4410 260 903 1 chr5B.!!$R1 643
21 TraesCS4D01G041000 chr6B 61211551 61212189 638 False 802.00 802 89.2860 260 903 1 chr6B.!!$F1 643
22 TraesCS4D01G041000 chrUn 136394701 136395339 638 False 797.00 797 89.1300 260 903 1 chrUn.!!$F1 643
23 TraesCS4D01G041000 chr6A 279293064 279293786 722 False 664.00 664 83.2430 1684 2422 1 chr6A.!!$F1 738
24 TraesCS4D01G041000 chr2A 730140993 730141719 726 True 664.00 664 83.1760 1684 2425 1 chr2A.!!$R1 741

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
537 543 0.669625 GGAGGTTTGTCTTCGACGGG 60.67 60.0 0.0 0.0 34.95 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2465 2509 0.665835 TCAAACGACGCCTTGCAATT 59.334 45.0 0.0 0.0 0.0 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.825205 GGCACTTGCACATTGTTTTCT 58.175 42.857 3.15 0.00 44.36 2.52
21 22 3.197265 GGCACTTGCACATTGTTTTCTT 58.803 40.909 3.15 0.00 44.36 2.52
22 23 3.622612 GGCACTTGCACATTGTTTTCTTT 59.377 39.130 3.15 0.00 44.36 2.52
23 24 4.494526 GGCACTTGCACATTGTTTTCTTTG 60.495 41.667 3.15 0.00 44.36 2.77
24 25 4.580528 CACTTGCACATTGTTTTCTTTGC 58.419 39.130 0.00 0.00 0.00 3.68
25 26 4.093115 CACTTGCACATTGTTTTCTTTGCA 59.907 37.500 0.00 0.00 38.17 4.08
26 27 4.330620 ACTTGCACATTGTTTTCTTTGCAG 59.669 37.500 0.00 0.00 40.80 4.41
27 28 4.120792 TGCACATTGTTTTCTTTGCAGA 57.879 36.364 0.00 0.00 35.13 4.26
28 29 4.114073 TGCACATTGTTTTCTTTGCAGAG 58.886 39.130 0.00 0.00 35.13 3.35
29 30 3.492011 GCACATTGTTTTCTTTGCAGAGG 59.508 43.478 4.15 0.00 0.00 3.69
30 31 4.685924 CACATTGTTTTCTTTGCAGAGGT 58.314 39.130 4.15 0.00 0.00 3.85
31 32 4.505191 CACATTGTTTTCTTTGCAGAGGTG 59.495 41.667 4.15 0.00 0.00 4.00
32 33 4.160252 ACATTGTTTTCTTTGCAGAGGTGT 59.840 37.500 4.15 0.00 0.00 4.16
33 34 4.799564 TTGTTTTCTTTGCAGAGGTGTT 57.200 36.364 4.15 0.00 0.00 3.32
34 35 4.108699 TGTTTTCTTTGCAGAGGTGTTG 57.891 40.909 4.15 0.00 0.00 3.33
35 36 3.119173 TGTTTTCTTTGCAGAGGTGTTGG 60.119 43.478 4.15 0.00 0.00 3.77
36 37 2.435372 TTCTTTGCAGAGGTGTTGGT 57.565 45.000 4.15 0.00 0.00 3.67
37 38 2.435372 TCTTTGCAGAGGTGTTGGTT 57.565 45.000 4.15 0.00 0.00 3.67
38 39 2.733956 TCTTTGCAGAGGTGTTGGTTT 58.266 42.857 4.15 0.00 0.00 3.27
39 40 3.096092 TCTTTGCAGAGGTGTTGGTTTT 58.904 40.909 4.15 0.00 0.00 2.43
40 41 2.957491 TTGCAGAGGTGTTGGTTTTG 57.043 45.000 0.00 0.00 0.00 2.44
41 42 1.110442 TGCAGAGGTGTTGGTTTTGG 58.890 50.000 0.00 0.00 0.00 3.28
42 43 1.341482 TGCAGAGGTGTTGGTTTTGGA 60.341 47.619 0.00 0.00 0.00 3.53
43 44 1.338020 GCAGAGGTGTTGGTTTTGGAG 59.662 52.381 0.00 0.00 0.00 3.86
44 45 2.930950 CAGAGGTGTTGGTTTTGGAGA 58.069 47.619 0.00 0.00 0.00 3.71
45 46 3.287222 CAGAGGTGTTGGTTTTGGAGAA 58.713 45.455 0.00 0.00 0.00 2.87
46 47 3.066760 CAGAGGTGTTGGTTTTGGAGAAC 59.933 47.826 0.00 0.00 0.00 3.01
55 56 2.483106 GGTTTTGGAGAACCTTACTCGC 59.517 50.000 0.00 0.00 44.55 5.03
56 57 3.135994 GTTTTGGAGAACCTTACTCGCA 58.864 45.455 0.00 0.00 35.49 5.10
57 58 3.695830 TTTGGAGAACCTTACTCGCAT 57.304 42.857 0.00 0.00 35.49 4.73
58 59 3.695830 TTGGAGAACCTTACTCGCATT 57.304 42.857 0.00 0.00 35.49 3.56
59 60 3.247006 TGGAGAACCTTACTCGCATTC 57.753 47.619 0.00 0.00 35.49 2.67
60 61 2.093658 TGGAGAACCTTACTCGCATTCC 60.094 50.000 0.00 0.00 35.49 3.01
61 62 2.093658 GGAGAACCTTACTCGCATTCCA 60.094 50.000 0.00 0.00 35.49 3.53
62 63 2.930682 GAGAACCTTACTCGCATTCCAC 59.069 50.000 0.00 0.00 0.00 4.02
63 64 2.301870 AGAACCTTACTCGCATTCCACA 59.698 45.455 0.00 0.00 0.00 4.17
64 65 3.055094 AGAACCTTACTCGCATTCCACAT 60.055 43.478 0.00 0.00 0.00 3.21
65 66 2.632377 ACCTTACTCGCATTCCACATG 58.368 47.619 0.00 0.00 0.00 3.21
66 67 2.027192 ACCTTACTCGCATTCCACATGT 60.027 45.455 0.00 0.00 0.00 3.21
67 68 3.009723 CCTTACTCGCATTCCACATGTT 58.990 45.455 0.00 0.00 0.00 2.71
68 69 3.440173 CCTTACTCGCATTCCACATGTTT 59.560 43.478 0.00 0.00 0.00 2.83
69 70 2.995466 ACTCGCATTCCACATGTTTG 57.005 45.000 0.00 0.00 0.00 2.93
70 71 2.229792 ACTCGCATTCCACATGTTTGT 58.770 42.857 0.00 0.00 36.15 2.83
71 72 2.226437 ACTCGCATTCCACATGTTTGTC 59.774 45.455 0.00 0.00 32.34 3.18
72 73 2.485426 CTCGCATTCCACATGTTTGTCT 59.515 45.455 0.00 0.00 32.34 3.41
73 74 3.669536 TCGCATTCCACATGTTTGTCTA 58.330 40.909 0.00 0.00 32.34 2.59
74 75 3.684305 TCGCATTCCACATGTTTGTCTAG 59.316 43.478 0.00 0.00 32.34 2.43
75 76 3.181507 CGCATTCCACATGTTTGTCTAGG 60.182 47.826 0.00 0.00 32.34 3.02
76 77 3.129287 GCATTCCACATGTTTGTCTAGGG 59.871 47.826 0.00 0.00 32.34 3.53
77 78 4.335416 CATTCCACATGTTTGTCTAGGGT 58.665 43.478 0.00 0.00 32.34 4.34
78 79 5.496556 CATTCCACATGTTTGTCTAGGGTA 58.503 41.667 0.00 0.00 32.34 3.69
79 80 5.570205 TTCCACATGTTTGTCTAGGGTAA 57.430 39.130 0.00 0.00 32.34 2.85
80 81 5.772393 TCCACATGTTTGTCTAGGGTAAT 57.228 39.130 0.00 0.00 32.34 1.89
81 82 5.496556 TCCACATGTTTGTCTAGGGTAATG 58.503 41.667 0.00 0.00 32.34 1.90
82 83 4.640201 CCACATGTTTGTCTAGGGTAATGG 59.360 45.833 0.00 0.00 32.34 3.16
83 84 5.253330 CACATGTTTGTCTAGGGTAATGGT 58.747 41.667 0.00 0.00 32.34 3.55
84 85 5.710099 CACATGTTTGTCTAGGGTAATGGTT 59.290 40.000 0.00 0.00 32.34 3.67
85 86 5.710099 ACATGTTTGTCTAGGGTAATGGTTG 59.290 40.000 0.00 0.00 0.00 3.77
86 87 5.570205 TGTTTGTCTAGGGTAATGGTTGA 57.430 39.130 0.00 0.00 0.00 3.18
87 88 6.134535 TGTTTGTCTAGGGTAATGGTTGAT 57.865 37.500 0.00 0.00 0.00 2.57
88 89 5.943416 TGTTTGTCTAGGGTAATGGTTGATG 59.057 40.000 0.00 0.00 0.00 3.07
89 90 5.772393 TTGTCTAGGGTAATGGTTGATGT 57.228 39.130 0.00 0.00 0.00 3.06
90 91 5.772393 TGTCTAGGGTAATGGTTGATGTT 57.228 39.130 0.00 0.00 0.00 2.71
91 92 5.496556 TGTCTAGGGTAATGGTTGATGTTG 58.503 41.667 0.00 0.00 0.00 3.33
92 93 5.013704 TGTCTAGGGTAATGGTTGATGTTGT 59.986 40.000 0.00 0.00 0.00 3.32
93 94 5.944007 GTCTAGGGTAATGGTTGATGTTGTT 59.056 40.000 0.00 0.00 0.00 2.83
94 95 5.943416 TCTAGGGTAATGGTTGATGTTGTTG 59.057 40.000 0.00 0.00 0.00 3.33
95 96 3.258123 AGGGTAATGGTTGATGTTGTTGC 59.742 43.478 0.00 0.00 0.00 4.17
96 97 3.258123 GGGTAATGGTTGATGTTGTTGCT 59.742 43.478 0.00 0.00 0.00 3.91
97 98 4.236935 GGTAATGGTTGATGTTGTTGCTG 58.763 43.478 0.00 0.00 0.00 4.41
98 99 3.389925 AATGGTTGATGTTGTTGCTGG 57.610 42.857 0.00 0.00 0.00 4.85
99 100 1.774110 TGGTTGATGTTGTTGCTGGT 58.226 45.000 0.00 0.00 0.00 4.00
100 101 2.106566 TGGTTGATGTTGTTGCTGGTT 58.893 42.857 0.00 0.00 0.00 3.67
101 102 2.159128 TGGTTGATGTTGTTGCTGGTTG 60.159 45.455 0.00 0.00 0.00 3.77
102 103 2.159114 GGTTGATGTTGTTGCTGGTTGT 60.159 45.455 0.00 0.00 0.00 3.32
103 104 3.067461 GGTTGATGTTGTTGCTGGTTGTA 59.933 43.478 0.00 0.00 0.00 2.41
104 105 4.290155 GTTGATGTTGTTGCTGGTTGTAG 58.710 43.478 0.00 0.00 0.00 2.74
105 106 3.550820 TGATGTTGTTGCTGGTTGTAGT 58.449 40.909 0.00 0.00 0.00 2.73
106 107 3.314913 TGATGTTGTTGCTGGTTGTAGTG 59.685 43.478 0.00 0.00 0.00 2.74
107 108 1.403679 TGTTGTTGCTGGTTGTAGTGC 59.596 47.619 0.00 0.00 0.00 4.40
108 109 1.403679 GTTGTTGCTGGTTGTAGTGCA 59.596 47.619 0.00 0.00 0.00 4.57
109 110 1.979855 TGTTGCTGGTTGTAGTGCAT 58.020 45.000 0.00 0.00 35.27 3.96
110 111 2.305928 TGTTGCTGGTTGTAGTGCATT 58.694 42.857 0.00 0.00 35.27 3.56
111 112 2.034432 TGTTGCTGGTTGTAGTGCATTG 59.966 45.455 0.00 0.00 35.27 2.82
112 113 1.979855 TGCTGGTTGTAGTGCATTGT 58.020 45.000 0.00 0.00 0.00 2.71
113 114 2.305928 TGCTGGTTGTAGTGCATTGTT 58.694 42.857 0.00 0.00 0.00 2.83
114 115 2.293122 TGCTGGTTGTAGTGCATTGTTC 59.707 45.455 0.00 0.00 0.00 3.18
115 116 2.293122 GCTGGTTGTAGTGCATTGTTCA 59.707 45.455 0.00 0.00 0.00 3.18
116 117 3.243367 GCTGGTTGTAGTGCATTGTTCAA 60.243 43.478 0.00 0.00 0.00 2.69
117 118 4.736168 GCTGGTTGTAGTGCATTGTTCAAA 60.736 41.667 0.00 0.00 0.00 2.69
118 119 5.330455 TGGTTGTAGTGCATTGTTCAAAA 57.670 34.783 0.00 0.00 0.00 2.44
119 120 5.105752 TGGTTGTAGTGCATTGTTCAAAAC 58.894 37.500 0.00 0.00 0.00 2.43
120 121 5.105554 TGGTTGTAGTGCATTGTTCAAAACT 60.106 36.000 0.00 0.00 0.00 2.66
121 122 5.810074 GGTTGTAGTGCATTGTTCAAAACTT 59.190 36.000 0.00 0.00 0.00 2.66
122 123 6.019881 GGTTGTAGTGCATTGTTCAAAACTTC 60.020 38.462 0.00 2.38 0.00 3.01
123 124 6.201226 TGTAGTGCATTGTTCAAAACTTCA 57.799 33.333 0.00 4.21 0.00 3.02
124 125 6.625362 TGTAGTGCATTGTTCAAAACTTCAA 58.375 32.000 0.00 0.00 0.00 2.69
125 126 6.529829 TGTAGTGCATTGTTCAAAACTTCAAC 59.470 34.615 0.00 0.00 0.00 3.18
126 127 5.477510 AGTGCATTGTTCAAAACTTCAACA 58.522 33.333 0.00 0.00 0.00 3.33
127 128 6.108015 AGTGCATTGTTCAAAACTTCAACAT 58.892 32.000 0.00 0.00 30.28 2.71
128 129 6.036300 AGTGCATTGTTCAAAACTTCAACATG 59.964 34.615 0.00 0.00 30.28 3.21
129 130 6.035866 GTGCATTGTTCAAAACTTCAACATGA 59.964 34.615 0.00 0.00 30.28 3.07
130 131 6.035866 TGCATTGTTCAAAACTTCAACATGAC 59.964 34.615 0.00 0.00 30.28 3.06
131 132 6.035866 GCATTGTTCAAAACTTCAACATGACA 59.964 34.615 0.00 0.00 30.28 3.58
132 133 6.942886 TTGTTCAAAACTTCAACATGACAC 57.057 33.333 0.00 0.00 30.28 3.67
133 134 5.406649 TGTTCAAAACTTCAACATGACACC 58.593 37.500 0.00 0.00 0.00 4.16
134 135 4.647424 TCAAAACTTCAACATGACACCC 57.353 40.909 0.00 0.00 0.00 4.61
135 136 3.066064 TCAAAACTTCAACATGACACCCG 59.934 43.478 0.00 0.00 0.00 5.28
136 137 2.631160 AACTTCAACATGACACCCGA 57.369 45.000 0.00 0.00 0.00 5.14
137 138 2.859165 ACTTCAACATGACACCCGAT 57.141 45.000 0.00 0.00 0.00 4.18
138 139 2.426522 ACTTCAACATGACACCCGATG 58.573 47.619 0.00 0.00 0.00 3.84
148 149 2.386661 ACACCCGATGTCATGTTCTC 57.613 50.000 0.00 0.00 36.54 2.87
149 150 1.902508 ACACCCGATGTCATGTTCTCT 59.097 47.619 0.00 0.00 36.54 3.10
150 151 2.303022 ACACCCGATGTCATGTTCTCTT 59.697 45.455 0.00 0.00 36.54 2.85
151 152 3.244561 ACACCCGATGTCATGTTCTCTTT 60.245 43.478 0.00 0.00 36.54 2.52
152 153 3.753272 CACCCGATGTCATGTTCTCTTTT 59.247 43.478 0.00 0.00 0.00 2.27
153 154 4.216257 CACCCGATGTCATGTTCTCTTTTT 59.784 41.667 0.00 0.00 0.00 1.94
194 195 9.698309 TTTATTTTTGTGTACAATACATGGGTG 57.302 29.630 0.00 0.00 41.34 4.61
195 196 6.716934 TTTTTGTGTACAATACATGGGTGT 57.283 33.333 0.00 0.32 41.34 4.16
196 197 7.818997 TTTTTGTGTACAATACATGGGTGTA 57.181 32.000 0.00 0.00 44.43 2.90
207 208 4.729552 ACATGGGTGTATGCATCCTATT 57.270 40.909 14.69 0.00 46.06 1.73
208 209 4.401022 ACATGGGTGTATGCATCCTATTG 58.599 43.478 14.69 11.24 46.06 1.90
209 210 2.862541 TGGGTGTATGCATCCTATTGC 58.137 47.619 14.69 0.00 46.06 3.56
210 211 2.442878 TGGGTGTATGCATCCTATTGCT 59.557 45.455 14.69 0.00 46.06 3.91
211 212 3.117550 TGGGTGTATGCATCCTATTGCTT 60.118 43.478 14.69 0.00 46.06 3.91
212 213 3.503748 GGGTGTATGCATCCTATTGCTTC 59.496 47.826 0.19 0.00 42.60 3.86
213 214 4.136796 GGTGTATGCATCCTATTGCTTCA 58.863 43.478 0.19 0.00 43.18 3.02
214 215 4.763793 GGTGTATGCATCCTATTGCTTCAT 59.236 41.667 0.19 0.00 43.18 2.57
215 216 5.939883 GGTGTATGCATCCTATTGCTTCATA 59.060 40.000 0.19 0.00 43.18 2.15
216 217 6.600822 GGTGTATGCATCCTATTGCTTCATAT 59.399 38.462 0.19 0.00 43.18 1.78
217 218 7.414873 GGTGTATGCATCCTATTGCTTCATATG 60.415 40.741 0.19 0.00 43.18 1.78
218 219 5.578005 ATGCATCCTATTGCTTCATATGC 57.422 39.130 0.00 0.00 43.18 3.14
219 220 4.659115 TGCATCCTATTGCTTCATATGCT 58.341 39.130 0.00 0.00 43.18 3.79
220 221 5.807909 TGCATCCTATTGCTTCATATGCTA 58.192 37.500 0.00 0.00 43.18 3.49
221 222 5.645067 TGCATCCTATTGCTTCATATGCTAC 59.355 40.000 0.00 0.00 43.18 3.58
222 223 5.645067 GCATCCTATTGCTTCATATGCTACA 59.355 40.000 0.00 0.00 39.57 2.74
223 224 6.402983 GCATCCTATTGCTTCATATGCTACAC 60.403 42.308 0.00 0.00 39.57 2.90
224 225 5.551233 TCCTATTGCTTCATATGCTACACC 58.449 41.667 0.00 0.00 0.00 4.16
225 226 4.389992 CCTATTGCTTCATATGCTACACCG 59.610 45.833 0.00 0.00 0.00 4.94
226 227 2.238942 TGCTTCATATGCTACACCGG 57.761 50.000 0.00 0.00 0.00 5.28
227 228 1.202639 TGCTTCATATGCTACACCGGG 60.203 52.381 6.32 0.00 0.00 5.73
315 319 2.479750 GGTCCGCCTCGTCTCCTAC 61.480 68.421 0.00 0.00 0.00 3.18
345 349 1.077501 CATGGAGGTGCGGTGGATT 60.078 57.895 0.00 0.00 0.00 3.01
415 420 1.626686 TGTTAGGGTTTGTGCCATGG 58.373 50.000 7.63 7.63 0.00 3.66
417 422 1.967779 GTTAGGGTTTGTGCCATGGTT 59.032 47.619 14.67 0.00 0.00 3.67
426 431 3.500448 TGTGCCATGGTTAAGAAGACA 57.500 42.857 14.67 0.00 0.00 3.41
427 432 3.411446 TGTGCCATGGTTAAGAAGACAG 58.589 45.455 14.67 0.00 0.00 3.51
428 433 3.072330 TGTGCCATGGTTAAGAAGACAGA 59.928 43.478 14.67 0.00 0.00 3.41
429 434 3.437049 GTGCCATGGTTAAGAAGACAGAC 59.563 47.826 14.67 0.00 0.00 3.51
430 435 2.673368 GCCATGGTTAAGAAGACAGACG 59.327 50.000 14.67 0.00 0.00 4.18
431 436 3.616560 GCCATGGTTAAGAAGACAGACGA 60.617 47.826 14.67 0.00 0.00 4.20
432 437 3.927142 CCATGGTTAAGAAGACAGACGAC 59.073 47.826 2.57 0.00 0.00 4.34
433 438 3.278367 TGGTTAAGAAGACAGACGACG 57.722 47.619 0.00 0.00 0.00 5.12
434 439 2.880268 TGGTTAAGAAGACAGACGACGA 59.120 45.455 0.00 0.00 0.00 4.20
435 440 3.232771 GGTTAAGAAGACAGACGACGAC 58.767 50.000 0.00 0.00 0.00 4.34
436 441 2.869358 TAAGAAGACAGACGACGACG 57.131 50.000 5.58 5.58 45.75 5.12
437 442 1.224075 AAGAAGACAGACGACGACGA 58.776 50.000 15.32 0.00 42.66 4.20
463 468 6.595716 CGACTTCTTGAAGATGGAATAAGGTT 59.404 38.462 16.21 0.00 0.00 3.50
484 490 3.528370 CCTGTCTAGCCCCCGTCG 61.528 72.222 0.00 0.00 0.00 5.12
496 502 0.887387 CCCCGTCGTGGTGATGTTTT 60.887 55.000 0.00 0.00 35.15 2.43
530 536 0.818040 GGCGTGTGGAGGTTTGTCTT 60.818 55.000 0.00 0.00 0.00 3.01
537 543 0.669625 GGAGGTTTGTCTTCGACGGG 60.670 60.000 0.00 0.00 34.95 5.28
605 611 1.124702 CGGTCTTCGTTCGTCTACGC 61.125 60.000 0.00 0.00 41.16 4.42
658 664 1.153549 GCTTCTCTTCATCGGCGGT 60.154 57.895 7.21 0.00 0.00 5.68
664 670 1.671054 CTTCATCGGCGGTGGTTGT 60.671 57.895 21.45 0.00 0.00 3.32
672 678 1.299089 GCGGTGGTTGTTGTTCTGC 60.299 57.895 0.00 0.00 0.00 4.26
677 683 1.029408 TGGTTGTTGTTCTGCTGCGT 61.029 50.000 0.00 0.00 0.00 5.24
738 744 4.517453 GTCTACTACAACAATGTTTGCCCA 59.483 41.667 0.00 0.00 41.05 5.36
753 760 1.898154 CCCAACTTCGACGAGGGAT 59.102 57.895 13.32 0.00 42.25 3.85
763 770 1.821061 GACGAGGGATGGGCGATGAT 61.821 60.000 0.00 0.00 0.00 2.45
764 771 1.079543 CGAGGGATGGGCGATGATC 60.080 63.158 0.00 0.00 0.00 2.92
873 880 9.470399 TTCTATGTACTACCTTGACAGTTGATA 57.530 33.333 0.00 0.00 0.00 2.15
892 899 9.110502 AGTTGATAAATAGATCGGAAGTTTTCC 57.889 33.333 0.00 0.00 46.62 3.13
1016 1024 1.301716 CCACGGCCCCATCTTATCG 60.302 63.158 0.00 0.00 0.00 2.92
1018 1026 1.458777 ACGGCCCCATCTTATCGGA 60.459 57.895 0.00 0.00 0.00 4.55
1027 1035 3.055819 CCCATCTTATCGGACGATCCAAT 60.056 47.826 10.82 0.76 35.91 3.16
1089 1102 1.329599 CCGCGTAGGAAATAAGCAACC 59.670 52.381 4.92 0.00 45.00 3.77
1453 1469 3.308705 GTCCCCGTCGTCACCCTT 61.309 66.667 0.00 0.00 0.00 3.95
1643 1659 4.832608 GTAACCCTGCCGGCCTCG 62.833 72.222 26.77 13.34 33.26 4.63
1707 1723 1.432514 CTGATCCACCACAACGACAG 58.567 55.000 0.00 0.00 0.00 3.51
1717 1733 1.811266 CAACGACAGCCTGATCCGG 60.811 63.158 0.00 0.00 0.00 5.14
1777 1793 3.117625 TGGTGATCGTCATCTACTACCCT 60.118 47.826 0.00 0.00 0.00 4.34
1781 1797 5.004448 TGATCGTCATCTACTACCCTGATC 58.996 45.833 0.00 0.00 0.00 2.92
1784 1800 3.150767 GTCATCTACTACCCTGATCGCT 58.849 50.000 0.00 0.00 0.00 4.93
1787 1803 4.944317 TCATCTACTACCCTGATCGCTATG 59.056 45.833 0.00 0.00 0.00 2.23
1842 1858 0.400213 ACCTGGAAATCCGTGAAGCA 59.600 50.000 0.00 0.00 39.43 3.91
1909 1925 1.964373 CTACGCCAACACCCGCTTT 60.964 57.895 0.00 0.00 0.00 3.51
1913 1929 3.989787 CCAACACCCGCTTTGGCC 61.990 66.667 0.00 0.00 36.10 5.36
2149 2192 0.861155 GGGAGGAGGAGGAGGACATA 59.139 60.000 0.00 0.00 0.00 2.29
2245 2288 0.317938 GCACCATCTACTACGCGGAG 60.318 60.000 19.02 19.02 0.00 4.63
2246 2289 0.311165 CACCATCTACTACGCGGAGG 59.689 60.000 24.83 6.93 0.00 4.30
2247 2290 0.182061 ACCATCTACTACGCGGAGGA 59.818 55.000 24.83 14.76 0.00 3.71
2248 2291 1.202903 ACCATCTACTACGCGGAGGAT 60.203 52.381 24.83 13.82 0.00 3.24
2254 2297 1.025812 ACTACGCGGAGGATCTCAAG 58.974 55.000 24.83 0.00 33.73 3.02
2306 2349 2.260869 GCCGGCAAGCACAAGAAGA 61.261 57.895 24.80 0.00 0.00 2.87
2383 2426 0.108992 TCACGCCGGTCTATTCACAC 60.109 55.000 1.90 0.00 0.00 3.82
2387 2430 1.403647 CGCCGGTCTATTCACACTGAA 60.404 52.381 1.90 0.00 41.09 3.02
2444 2488 2.691409 TGCTAAATTGCTAGGCGTCT 57.309 45.000 0.00 0.00 0.00 4.18
2445 2489 2.550978 TGCTAAATTGCTAGGCGTCTC 58.449 47.619 0.00 0.00 0.00 3.36
2447 2491 2.484889 CTAAATTGCTAGGCGTCTCCC 58.515 52.381 0.00 0.00 34.51 4.30
2448 2492 0.912486 AAATTGCTAGGCGTCTCCCT 59.088 50.000 0.00 0.00 39.05 4.20
2449 2493 0.466124 AATTGCTAGGCGTCTCCCTC 59.534 55.000 0.00 0.00 36.41 4.30
2450 2494 0.687757 ATTGCTAGGCGTCTCCCTCA 60.688 55.000 0.00 0.00 36.41 3.86
2451 2495 0.902984 TTGCTAGGCGTCTCCCTCAA 60.903 55.000 0.00 0.00 36.41 3.02
2452 2496 0.687757 TGCTAGGCGTCTCCCTCAAT 60.688 55.000 0.00 0.00 36.41 2.57
2453 2497 0.249657 GCTAGGCGTCTCCCTCAATG 60.250 60.000 0.00 0.00 36.41 2.82
2454 2498 1.115467 CTAGGCGTCTCCCTCAATGT 58.885 55.000 0.00 0.00 36.41 2.71
2455 2499 1.482593 CTAGGCGTCTCCCTCAATGTT 59.517 52.381 0.00 0.00 36.41 2.71
2456 2500 0.693049 AGGCGTCTCCCTCAATGTTT 59.307 50.000 0.00 0.00 34.51 2.83
2457 2501 1.073923 AGGCGTCTCCCTCAATGTTTT 59.926 47.619 0.00 0.00 34.51 2.43
2458 2502 1.886542 GGCGTCTCCCTCAATGTTTTT 59.113 47.619 0.00 0.00 0.00 1.94
2459 2503 3.078837 GGCGTCTCCCTCAATGTTTTTA 58.921 45.455 0.00 0.00 0.00 1.52
2460 2504 3.504520 GGCGTCTCCCTCAATGTTTTTAA 59.495 43.478 0.00 0.00 0.00 1.52
2461 2505 4.022676 GGCGTCTCCCTCAATGTTTTTAAA 60.023 41.667 0.00 0.00 0.00 1.52
2462 2506 5.508320 GGCGTCTCCCTCAATGTTTTTAAAA 60.508 40.000 0.00 0.00 0.00 1.52
2463 2507 5.980715 GCGTCTCCCTCAATGTTTTTAAAAA 59.019 36.000 9.31 9.31 0.00 1.94
2481 2525 2.217429 AAAAATTGCAAGGCGTCGTT 57.783 40.000 4.94 0.00 0.00 3.85
2488 2532 1.327507 GCAAGGCGTCGTTTGAATTC 58.672 50.000 13.46 0.00 0.00 2.17
2520 2564 2.125552 CGGCAGCGATGTGGAAGA 60.126 61.111 1.22 0.00 0.00 2.87
2522 2566 1.298157 CGGCAGCGATGTGGAAGAAA 61.298 55.000 1.22 0.00 0.00 2.52
2539 2583 3.798202 AGAAACTCTTCTTGCGTTCAGT 58.202 40.909 0.00 0.00 38.89 3.41
2540 2584 4.945246 AGAAACTCTTCTTGCGTTCAGTA 58.055 39.130 0.00 0.00 38.89 2.74
2541 2585 5.542779 AGAAACTCTTCTTGCGTTCAGTAT 58.457 37.500 0.00 0.00 38.89 2.12
2542 2586 5.406780 AGAAACTCTTCTTGCGTTCAGTATG 59.593 40.000 0.00 0.00 38.89 2.39
2543 2587 2.996621 ACTCTTCTTGCGTTCAGTATGC 59.003 45.455 0.00 0.00 39.33 3.14
2544 2588 1.992667 TCTTCTTGCGTTCAGTATGCG 59.007 47.619 0.00 0.00 41.91 4.73
2545 2589 1.726791 CTTCTTGCGTTCAGTATGCGT 59.273 47.619 0.00 0.00 41.91 5.24
2546 2590 1.067693 TCTTGCGTTCAGTATGCGTG 58.932 50.000 0.00 0.00 41.91 5.34
2547 2591 0.790207 CTTGCGTTCAGTATGCGTGT 59.210 50.000 0.00 0.00 41.91 4.49
2548 2592 0.787787 TTGCGTTCAGTATGCGTGTC 59.212 50.000 0.00 0.00 41.91 3.67
2549 2593 0.038618 TGCGTTCAGTATGCGTGTCT 60.039 50.000 0.00 0.00 41.91 3.41
2550 2594 1.200484 TGCGTTCAGTATGCGTGTCTA 59.800 47.619 0.00 0.00 41.91 2.59
2551 2595 1.582502 GCGTTCAGTATGCGTGTCTAC 59.417 52.381 0.00 0.00 34.76 2.59
2563 2607 2.135664 GTGTCTACGAGTTGTGCAGT 57.864 50.000 0.00 0.00 0.00 4.40
2564 2608 1.787155 GTGTCTACGAGTTGTGCAGTG 59.213 52.381 0.00 0.00 0.00 3.66
2565 2609 0.784778 GTCTACGAGTTGTGCAGTGC 59.215 55.000 8.58 8.58 0.00 4.40
2566 2610 0.673985 TCTACGAGTTGTGCAGTGCT 59.326 50.000 17.60 0.00 0.00 4.40
2567 2611 1.063806 CTACGAGTTGTGCAGTGCTC 58.936 55.000 17.60 13.76 0.00 4.26
2568 2612 0.387565 TACGAGTTGTGCAGTGCTCA 59.612 50.000 17.60 16.54 0.00 4.26
2569 2613 0.250038 ACGAGTTGTGCAGTGCTCAT 60.250 50.000 19.70 6.84 32.16 2.90
2570 2614 0.441533 CGAGTTGTGCAGTGCTCATC 59.558 55.000 19.70 18.07 32.16 2.92
2571 2615 0.801251 GAGTTGTGCAGTGCTCATCC 59.199 55.000 19.70 13.40 32.16 3.51
2572 2616 0.109153 AGTTGTGCAGTGCTCATCCA 59.891 50.000 19.70 3.44 32.16 3.41
2573 2617 0.953727 GTTGTGCAGTGCTCATCCAA 59.046 50.000 19.70 9.93 32.16 3.53
2574 2618 1.337703 GTTGTGCAGTGCTCATCCAAA 59.662 47.619 19.70 2.70 32.16 3.28
2575 2619 1.241165 TGTGCAGTGCTCATCCAAAG 58.759 50.000 17.60 0.00 0.00 2.77
2576 2620 1.242076 GTGCAGTGCTCATCCAAAGT 58.758 50.000 17.60 0.00 0.00 2.66
2577 2621 1.198637 GTGCAGTGCTCATCCAAAGTC 59.801 52.381 17.60 0.00 0.00 3.01
2603 2647 2.695666 GAGCATGTCTAACAGAGCCCTA 59.304 50.000 0.00 0.00 34.77 3.53
2681 2782 3.028130 GTTTTGAGGGTTGGTTTGAGGA 58.972 45.455 0.00 0.00 0.00 3.71
2837 2938 6.682423 TGGACATCATAGCAAAACATACAG 57.318 37.500 0.00 0.00 0.00 2.74
2932 3034 0.472471 ACCGGTGAAGTTGTCCACAT 59.528 50.000 6.12 0.00 35.13 3.21
2933 3035 1.695242 ACCGGTGAAGTTGTCCACATA 59.305 47.619 6.12 0.00 35.13 2.29
3331 3437 0.610232 AAGCTTGATGCCTCCGCTTT 60.610 50.000 0.00 0.00 44.23 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.825205 AGAAAACAATGTGCAAGTGCC 58.175 42.857 0.00 0.00 41.18 5.01
1 2 4.580528 CAAAGAAAACAATGTGCAAGTGC 58.419 39.130 0.00 0.00 42.50 4.40
2 3 4.093115 TGCAAAGAAAACAATGTGCAAGTG 59.907 37.500 0.00 0.00 38.93 3.16
3 4 4.252073 TGCAAAGAAAACAATGTGCAAGT 58.748 34.783 0.00 0.00 38.93 3.16
4 5 4.567558 TCTGCAAAGAAAACAATGTGCAAG 59.432 37.500 0.00 0.00 41.11 4.01
5 6 4.502016 TCTGCAAAGAAAACAATGTGCAA 58.498 34.783 0.00 0.00 41.11 4.08
6 7 4.114073 CTCTGCAAAGAAAACAATGTGCA 58.886 39.130 0.00 0.00 39.53 4.57
7 8 3.492011 CCTCTGCAAAGAAAACAATGTGC 59.508 43.478 0.00 0.00 0.00 4.57
8 9 4.505191 CACCTCTGCAAAGAAAACAATGTG 59.495 41.667 0.00 0.00 0.00 3.21
9 10 4.160252 ACACCTCTGCAAAGAAAACAATGT 59.840 37.500 0.00 0.00 0.00 2.71
10 11 4.685924 ACACCTCTGCAAAGAAAACAATG 58.314 39.130 0.00 0.00 0.00 2.82
11 12 5.111293 CAACACCTCTGCAAAGAAAACAAT 58.889 37.500 0.00 0.00 0.00 2.71
12 13 4.493547 CAACACCTCTGCAAAGAAAACAA 58.506 39.130 0.00 0.00 0.00 2.83
13 14 3.119173 CCAACACCTCTGCAAAGAAAACA 60.119 43.478 0.00 0.00 0.00 2.83
14 15 3.119137 ACCAACACCTCTGCAAAGAAAAC 60.119 43.478 0.00 0.00 0.00 2.43
15 16 3.096092 ACCAACACCTCTGCAAAGAAAA 58.904 40.909 0.00 0.00 0.00 2.29
16 17 2.733956 ACCAACACCTCTGCAAAGAAA 58.266 42.857 0.00 0.00 0.00 2.52
17 18 2.435372 ACCAACACCTCTGCAAAGAA 57.565 45.000 0.00 0.00 0.00 2.52
18 19 2.435372 AACCAACACCTCTGCAAAGA 57.565 45.000 0.00 0.00 0.00 2.52
19 20 3.189285 CAAAACCAACACCTCTGCAAAG 58.811 45.455 0.00 0.00 0.00 2.77
20 21 2.093764 CCAAAACCAACACCTCTGCAAA 60.094 45.455 0.00 0.00 0.00 3.68
21 22 1.480137 CCAAAACCAACACCTCTGCAA 59.520 47.619 0.00 0.00 0.00 4.08
22 23 1.110442 CCAAAACCAACACCTCTGCA 58.890 50.000 0.00 0.00 0.00 4.41
23 24 1.338020 CTCCAAAACCAACACCTCTGC 59.662 52.381 0.00 0.00 0.00 4.26
24 25 2.930950 TCTCCAAAACCAACACCTCTG 58.069 47.619 0.00 0.00 0.00 3.35
25 26 3.288092 GTTCTCCAAAACCAACACCTCT 58.712 45.455 0.00 0.00 0.00 3.69
26 27 2.361119 GGTTCTCCAAAACCAACACCTC 59.639 50.000 1.00 0.00 46.62 3.85
27 28 2.384828 GGTTCTCCAAAACCAACACCT 58.615 47.619 1.00 0.00 46.62 4.00
28 29 2.882927 GGTTCTCCAAAACCAACACC 57.117 50.000 1.00 0.00 46.62 4.16
35 36 3.135994 TGCGAGTAAGGTTCTCCAAAAC 58.864 45.455 0.00 0.00 35.89 2.43
36 37 3.478857 TGCGAGTAAGGTTCTCCAAAA 57.521 42.857 0.00 0.00 35.89 2.44
37 38 3.695830 ATGCGAGTAAGGTTCTCCAAA 57.304 42.857 0.00 0.00 35.89 3.28
38 39 3.596214 GAATGCGAGTAAGGTTCTCCAA 58.404 45.455 0.00 0.00 35.89 3.53
39 40 2.093658 GGAATGCGAGTAAGGTTCTCCA 60.094 50.000 0.00 0.00 35.89 3.86
40 41 2.093658 TGGAATGCGAGTAAGGTTCTCC 60.094 50.000 0.00 0.00 0.00 3.71
41 42 2.930682 GTGGAATGCGAGTAAGGTTCTC 59.069 50.000 0.00 0.00 0.00 2.87
42 43 2.301870 TGTGGAATGCGAGTAAGGTTCT 59.698 45.455 0.00 0.00 0.00 3.01
43 44 2.695359 TGTGGAATGCGAGTAAGGTTC 58.305 47.619 0.00 0.00 0.00 3.62
44 45 2.851263 TGTGGAATGCGAGTAAGGTT 57.149 45.000 0.00 0.00 0.00 3.50
45 46 2.027192 ACATGTGGAATGCGAGTAAGGT 60.027 45.455 0.00 0.00 0.00 3.50
46 47 2.632377 ACATGTGGAATGCGAGTAAGG 58.368 47.619 0.00 0.00 0.00 2.69
47 48 4.083324 ACAAACATGTGGAATGCGAGTAAG 60.083 41.667 0.00 0.00 0.00 2.34
48 49 3.818210 ACAAACATGTGGAATGCGAGTAA 59.182 39.130 0.00 0.00 0.00 2.24
49 50 3.407698 ACAAACATGTGGAATGCGAGTA 58.592 40.909 0.00 0.00 0.00 2.59
50 51 2.226437 GACAAACATGTGGAATGCGAGT 59.774 45.455 0.00 0.00 0.00 4.18
51 52 2.485426 AGACAAACATGTGGAATGCGAG 59.515 45.455 0.00 0.00 0.00 5.03
52 53 2.503331 AGACAAACATGTGGAATGCGA 58.497 42.857 0.00 0.00 0.00 5.10
53 54 2.995466 AGACAAACATGTGGAATGCG 57.005 45.000 0.00 0.00 0.00 4.73
54 55 3.129287 CCCTAGACAAACATGTGGAATGC 59.871 47.826 0.00 0.00 0.00 3.56
55 56 4.335416 ACCCTAGACAAACATGTGGAATG 58.665 43.478 0.00 0.00 0.00 2.67
56 57 4.657814 ACCCTAGACAAACATGTGGAAT 57.342 40.909 0.00 0.00 0.00 3.01
57 58 5.570205 TTACCCTAGACAAACATGTGGAA 57.430 39.130 0.00 0.00 0.00 3.53
58 59 5.496556 CATTACCCTAGACAAACATGTGGA 58.503 41.667 0.00 0.00 0.00 4.02
59 60 4.640201 CCATTACCCTAGACAAACATGTGG 59.360 45.833 0.00 0.00 0.00 4.17
60 61 5.253330 ACCATTACCCTAGACAAACATGTG 58.747 41.667 0.00 0.00 0.00 3.21
61 62 5.514500 ACCATTACCCTAGACAAACATGT 57.486 39.130 0.00 0.00 0.00 3.21
62 63 5.943416 TCAACCATTACCCTAGACAAACATG 59.057 40.000 0.00 0.00 0.00 3.21
63 64 6.134535 TCAACCATTACCCTAGACAAACAT 57.865 37.500 0.00 0.00 0.00 2.71
64 65 5.570205 TCAACCATTACCCTAGACAAACA 57.430 39.130 0.00 0.00 0.00 2.83
65 66 5.944007 ACATCAACCATTACCCTAGACAAAC 59.056 40.000 0.00 0.00 0.00 2.93
66 67 6.134535 ACATCAACCATTACCCTAGACAAA 57.865 37.500 0.00 0.00 0.00 2.83
67 68 5.772393 ACATCAACCATTACCCTAGACAA 57.228 39.130 0.00 0.00 0.00 3.18
68 69 5.013704 ACAACATCAACCATTACCCTAGACA 59.986 40.000 0.00 0.00 0.00 3.41
69 70 5.497474 ACAACATCAACCATTACCCTAGAC 58.503 41.667 0.00 0.00 0.00 2.59
70 71 5.772393 ACAACATCAACCATTACCCTAGA 57.228 39.130 0.00 0.00 0.00 2.43
71 72 5.393027 GCAACAACATCAACCATTACCCTAG 60.393 44.000 0.00 0.00 0.00 3.02
72 73 4.461081 GCAACAACATCAACCATTACCCTA 59.539 41.667 0.00 0.00 0.00 3.53
73 74 3.258123 GCAACAACATCAACCATTACCCT 59.742 43.478 0.00 0.00 0.00 4.34
74 75 3.258123 AGCAACAACATCAACCATTACCC 59.742 43.478 0.00 0.00 0.00 3.69
75 76 4.236935 CAGCAACAACATCAACCATTACC 58.763 43.478 0.00 0.00 0.00 2.85
76 77 4.236935 CCAGCAACAACATCAACCATTAC 58.763 43.478 0.00 0.00 0.00 1.89
77 78 3.894427 ACCAGCAACAACATCAACCATTA 59.106 39.130 0.00 0.00 0.00 1.90
78 79 2.699846 ACCAGCAACAACATCAACCATT 59.300 40.909 0.00 0.00 0.00 3.16
79 80 2.318908 ACCAGCAACAACATCAACCAT 58.681 42.857 0.00 0.00 0.00 3.55
80 81 1.774110 ACCAGCAACAACATCAACCA 58.226 45.000 0.00 0.00 0.00 3.67
81 82 2.159114 ACAACCAGCAACAACATCAACC 60.159 45.455 0.00 0.00 0.00 3.77
82 83 3.163630 ACAACCAGCAACAACATCAAC 57.836 42.857 0.00 0.00 0.00 3.18
83 84 3.951037 ACTACAACCAGCAACAACATCAA 59.049 39.130 0.00 0.00 0.00 2.57
84 85 3.314913 CACTACAACCAGCAACAACATCA 59.685 43.478 0.00 0.00 0.00 3.07
85 86 3.853307 GCACTACAACCAGCAACAACATC 60.853 47.826 0.00 0.00 0.00 3.06
86 87 2.034558 GCACTACAACCAGCAACAACAT 59.965 45.455 0.00 0.00 0.00 2.71
87 88 1.403679 GCACTACAACCAGCAACAACA 59.596 47.619 0.00 0.00 0.00 3.33
88 89 1.403679 TGCACTACAACCAGCAACAAC 59.596 47.619 0.00 0.00 33.48 3.32
89 90 1.756430 TGCACTACAACCAGCAACAA 58.244 45.000 0.00 0.00 33.48 2.83
90 91 1.979855 ATGCACTACAACCAGCAACA 58.020 45.000 0.00 0.00 40.76 3.33
91 92 2.034558 ACAATGCACTACAACCAGCAAC 59.965 45.455 0.00 0.00 40.76 4.17
92 93 2.305928 ACAATGCACTACAACCAGCAA 58.694 42.857 0.00 0.00 40.76 3.91
93 94 1.979855 ACAATGCACTACAACCAGCA 58.020 45.000 0.00 0.00 41.73 4.41
94 95 2.293122 TGAACAATGCACTACAACCAGC 59.707 45.455 0.00 0.00 0.00 4.85
95 96 4.566545 TTGAACAATGCACTACAACCAG 57.433 40.909 0.00 0.00 0.00 4.00
96 97 4.991153 TTTGAACAATGCACTACAACCA 57.009 36.364 0.00 0.00 0.00 3.67
97 98 5.348164 AGTTTTGAACAATGCACTACAACC 58.652 37.500 0.00 0.00 0.00 3.77
98 99 6.529829 TGAAGTTTTGAACAATGCACTACAAC 59.470 34.615 0.00 0.00 0.00 3.32
99 100 6.625362 TGAAGTTTTGAACAATGCACTACAA 58.375 32.000 0.00 0.00 0.00 2.41
100 101 6.201226 TGAAGTTTTGAACAATGCACTACA 57.799 33.333 0.00 0.00 0.00 2.74
101 102 6.529829 TGTTGAAGTTTTGAACAATGCACTAC 59.470 34.615 0.00 0.00 0.00 2.73
102 103 6.625362 TGTTGAAGTTTTGAACAATGCACTA 58.375 32.000 0.00 0.00 0.00 2.74
103 104 5.477510 TGTTGAAGTTTTGAACAATGCACT 58.522 33.333 0.00 0.00 0.00 4.40
104 105 5.776519 TGTTGAAGTTTTGAACAATGCAC 57.223 34.783 0.00 0.00 0.00 4.57
105 106 6.035866 GTCATGTTGAAGTTTTGAACAATGCA 59.964 34.615 0.00 0.00 33.50 3.96
106 107 6.035866 TGTCATGTTGAAGTTTTGAACAATGC 59.964 34.615 0.00 0.00 33.50 3.56
107 108 7.393327 GTGTCATGTTGAAGTTTTGAACAATG 58.607 34.615 0.00 0.00 33.50 2.82
108 109 6.534793 GGTGTCATGTTGAAGTTTTGAACAAT 59.465 34.615 0.00 0.00 33.50 2.71
109 110 5.866633 GGTGTCATGTTGAAGTTTTGAACAA 59.133 36.000 0.00 0.00 33.50 2.83
110 111 5.406649 GGTGTCATGTTGAAGTTTTGAACA 58.593 37.500 0.00 0.00 34.25 3.18
111 112 4.803613 GGGTGTCATGTTGAAGTTTTGAAC 59.196 41.667 0.00 0.00 0.00 3.18
112 113 4.439426 CGGGTGTCATGTTGAAGTTTTGAA 60.439 41.667 0.00 0.00 0.00 2.69
113 114 3.066064 CGGGTGTCATGTTGAAGTTTTGA 59.934 43.478 0.00 0.00 0.00 2.69
114 115 3.066064 TCGGGTGTCATGTTGAAGTTTTG 59.934 43.478 0.00 0.00 0.00 2.44
115 116 3.283751 TCGGGTGTCATGTTGAAGTTTT 58.716 40.909 0.00 0.00 0.00 2.43
116 117 2.925724 TCGGGTGTCATGTTGAAGTTT 58.074 42.857 0.00 0.00 0.00 2.66
117 118 2.631160 TCGGGTGTCATGTTGAAGTT 57.369 45.000 0.00 0.00 0.00 2.66
118 119 2.224523 ACATCGGGTGTCATGTTGAAGT 60.225 45.455 0.00 0.00 35.77 3.01
119 120 2.426522 ACATCGGGTGTCATGTTGAAG 58.573 47.619 0.00 0.00 35.77 3.02
120 121 2.559698 ACATCGGGTGTCATGTTGAA 57.440 45.000 0.00 0.00 35.77 2.69
129 130 1.902508 AGAGAACATGACATCGGGTGT 59.097 47.619 0.00 0.00 45.83 4.16
130 131 2.680312 AGAGAACATGACATCGGGTG 57.320 50.000 0.00 0.00 0.00 4.61
131 132 3.703001 AAAGAGAACATGACATCGGGT 57.297 42.857 0.00 0.00 0.00 5.28
168 169 9.698309 CACCCATGTATTGTACACAAAAATAAA 57.302 29.630 0.00 0.00 42.23 1.40
169 170 8.861086 ACACCCATGTATTGTACACAAAAATAA 58.139 29.630 0.00 0.00 42.23 1.40
170 171 8.410673 ACACCCATGTATTGTACACAAAAATA 57.589 30.769 0.00 0.00 42.23 1.40
171 172 7.296628 ACACCCATGTATTGTACACAAAAAT 57.703 32.000 0.00 0.00 42.23 1.82
172 173 6.716934 ACACCCATGTATTGTACACAAAAA 57.283 33.333 0.00 0.00 42.23 1.94
185 186 5.559770 CAATAGGATGCATACACCCATGTA 58.440 41.667 12.53 0.00 45.37 2.29
186 187 4.401022 CAATAGGATGCATACACCCATGT 58.599 43.478 12.53 0.00 43.30 3.21
187 188 3.192001 GCAATAGGATGCATACACCCATG 59.808 47.826 12.53 3.92 45.70 3.66
188 189 3.424703 GCAATAGGATGCATACACCCAT 58.575 45.455 12.53 0.00 45.70 4.00
189 190 2.862541 GCAATAGGATGCATACACCCA 58.137 47.619 12.53 0.00 45.70 4.51
198 199 5.645067 TGTAGCATATGAAGCAATAGGATGC 59.355 40.000 6.97 0.00 46.78 3.91
199 200 6.093219 GGTGTAGCATATGAAGCAATAGGATG 59.907 42.308 6.97 0.00 0.00 3.51
200 201 6.176183 GGTGTAGCATATGAAGCAATAGGAT 58.824 40.000 6.97 0.00 0.00 3.24
201 202 5.551233 GGTGTAGCATATGAAGCAATAGGA 58.449 41.667 6.97 0.00 0.00 2.94
202 203 4.389992 CGGTGTAGCATATGAAGCAATAGG 59.610 45.833 6.97 0.00 0.00 2.57
203 204 4.389992 CCGGTGTAGCATATGAAGCAATAG 59.610 45.833 6.97 0.00 0.00 1.73
204 205 4.314961 CCGGTGTAGCATATGAAGCAATA 58.685 43.478 6.97 0.00 0.00 1.90
205 206 3.141398 CCGGTGTAGCATATGAAGCAAT 58.859 45.455 6.97 0.00 0.00 3.56
206 207 2.560504 CCGGTGTAGCATATGAAGCAA 58.439 47.619 6.97 0.00 0.00 3.91
207 208 1.202639 CCCGGTGTAGCATATGAAGCA 60.203 52.381 6.97 0.00 0.00 3.91
208 209 1.512926 CCCGGTGTAGCATATGAAGC 58.487 55.000 6.97 0.00 0.00 3.86
209 210 1.512926 GCCCGGTGTAGCATATGAAG 58.487 55.000 6.97 0.00 0.00 3.02
210 211 0.249699 CGCCCGGTGTAGCATATGAA 60.250 55.000 6.97 0.00 0.00 2.57
211 212 1.365999 CGCCCGGTGTAGCATATGA 59.634 57.895 6.97 0.00 0.00 2.15
212 213 0.315886 TACGCCCGGTGTAGCATATG 59.684 55.000 6.75 0.00 0.00 1.78
213 214 0.316204 GTACGCCCGGTGTAGCATAT 59.684 55.000 11.24 0.00 0.00 1.78
214 215 1.735360 GTACGCCCGGTGTAGCATA 59.265 57.895 11.24 0.00 0.00 3.14
215 216 2.497770 GTACGCCCGGTGTAGCAT 59.502 61.111 11.24 0.00 0.00 3.79
216 217 3.762247 GGTACGCCCGGTGTAGCA 61.762 66.667 27.73 1.95 43.60 3.49
217 218 4.519437 GGGTACGCCCGGTGTAGC 62.519 72.222 25.71 25.71 46.51 3.58
243 244 1.547820 AGATGAGTTCGCAGAGAGCAA 59.452 47.619 0.00 0.00 46.13 3.91
372 377 8.040727 ACAAAACTCAGAAAAGCACCTAAAAAT 58.959 29.630 0.00 0.00 0.00 1.82
415 420 2.901264 CGTCGTCGTCTGTCTTCTTAAC 59.099 50.000 0.00 0.00 0.00 2.01
417 422 2.156504 GTCGTCGTCGTCTGTCTTCTTA 59.843 50.000 1.33 0.00 38.33 2.10
426 431 0.943359 AGAAGTCGTCGTCGTCGTCT 60.943 55.000 11.41 10.76 38.44 4.18
427 432 0.110912 AAGAAGTCGTCGTCGTCGTC 60.111 55.000 11.41 6.41 38.33 4.20
428 433 0.383983 CAAGAAGTCGTCGTCGTCGT 60.384 55.000 11.41 0.00 38.33 4.34
429 434 0.110956 TCAAGAAGTCGTCGTCGTCG 60.111 55.000 5.50 5.50 38.33 5.12
430 435 1.970608 CTTCAAGAAGTCGTCGTCGTC 59.029 52.381 1.33 0.00 38.33 4.20
431 436 1.600957 TCTTCAAGAAGTCGTCGTCGT 59.399 47.619 9.44 0.00 39.38 4.34
432 437 2.311450 TCTTCAAGAAGTCGTCGTCG 57.689 50.000 9.44 0.00 39.38 5.12
433 438 2.917971 CCATCTTCAAGAAGTCGTCGTC 59.082 50.000 9.44 0.00 39.38 4.20
434 439 2.557056 TCCATCTTCAAGAAGTCGTCGT 59.443 45.455 9.44 0.00 39.38 4.34
435 440 3.217599 TCCATCTTCAAGAAGTCGTCG 57.782 47.619 9.44 0.00 39.38 5.12
436 441 6.256757 CCTTATTCCATCTTCAAGAAGTCGTC 59.743 42.308 9.44 0.00 39.38 4.20
437 442 6.109359 CCTTATTCCATCTTCAAGAAGTCGT 58.891 40.000 9.44 0.00 39.38 4.34
463 468 2.696893 GGGGGCTAGACAGGGAGA 59.303 66.667 0.00 0.00 0.00 3.71
469 474 3.066190 CACGACGGGGGCTAGACA 61.066 66.667 0.00 0.00 0.00 3.41
484 490 4.403453 GACGATGCTTAAAACATCACCAC 58.597 43.478 15.00 3.64 43.36 4.16
496 502 1.226859 CGCCTTCCGACGATGCTTA 60.227 57.895 0.00 0.00 40.02 3.09
537 543 2.806237 GACCGGATCCCACGAGAC 59.194 66.667 9.46 0.00 0.00 3.36
580 586 1.585521 CGAACGAAGACCGGATCCG 60.586 63.158 27.65 27.65 43.93 4.18
639 645 2.233654 CCGCCGATGAAGAGAAGCG 61.234 63.158 0.00 0.00 42.99 4.68
658 664 1.029408 ACGCAGCAGAACAACAACCA 61.029 50.000 0.00 0.00 0.00 3.67
664 670 1.444119 GGACCAACGCAGCAGAACAA 61.444 55.000 0.00 0.00 0.00 2.83
672 678 1.153168 CCCCATAGGACCAACGCAG 60.153 63.158 0.00 0.00 38.24 5.18
738 744 1.898154 CCCATCCCTCGTCGAAGTT 59.102 57.895 0.00 0.00 0.00 2.66
904 911 9.353999 GCCTATTTTCTTCGATAAAAACAACAT 57.646 29.630 9.44 0.00 30.20 2.71
905 912 8.573035 AGCCTATTTTCTTCGATAAAAACAACA 58.427 29.630 9.44 0.00 30.20 3.33
906 913 8.850452 CAGCCTATTTTCTTCGATAAAAACAAC 58.150 33.333 9.44 2.81 30.20 3.32
907 914 7.540745 GCAGCCTATTTTCTTCGATAAAAACAA 59.459 33.333 9.44 1.84 30.20 2.83
908 915 7.027161 GCAGCCTATTTTCTTCGATAAAAACA 58.973 34.615 9.44 0.00 30.20 2.83
909 916 7.008357 GTGCAGCCTATTTTCTTCGATAAAAAC 59.992 37.037 9.44 0.10 30.20 2.43
910 917 7.027161 GTGCAGCCTATTTTCTTCGATAAAAA 58.973 34.615 9.44 8.53 30.20 1.94
911 918 6.551736 GTGCAGCCTATTTTCTTCGATAAAA 58.448 36.000 8.20 8.20 0.00 1.52
912 919 5.220586 CGTGCAGCCTATTTTCTTCGATAAA 60.221 40.000 0.00 0.00 0.00 1.40
913 920 4.270084 CGTGCAGCCTATTTTCTTCGATAA 59.730 41.667 0.00 0.00 0.00 1.75
914 921 3.802139 CGTGCAGCCTATTTTCTTCGATA 59.198 43.478 0.00 0.00 0.00 2.92
915 922 2.609459 CGTGCAGCCTATTTTCTTCGAT 59.391 45.455 0.00 0.00 0.00 3.59
916 923 1.999735 CGTGCAGCCTATTTTCTTCGA 59.000 47.619 0.00 0.00 0.00 3.71
917 924 1.062587 CCGTGCAGCCTATTTTCTTCG 59.937 52.381 0.00 0.00 0.00 3.79
957 964 3.263425 GCCTGGCCCTATAAGCATACTTA 59.737 47.826 7.66 0.00 42.47 2.24
958 965 2.040412 GCCTGGCCCTATAAGCATACTT 59.960 50.000 7.66 0.00 40.07 2.24
999 1007 1.301716 CCGATAAGATGGGGCCGTG 60.302 63.158 0.00 0.00 0.00 4.94
1005 1013 1.893137 TGGATCGTCCGATAAGATGGG 59.107 52.381 1.59 0.00 40.17 4.00
1016 1024 4.250464 TGACACTGTTAATTGGATCGTCC 58.750 43.478 0.00 0.00 36.96 4.79
1018 1026 3.684788 GCTGACACTGTTAATTGGATCGT 59.315 43.478 0.00 0.00 0.00 3.73
1027 1035 3.064207 CCGCTTAAGCTGACACTGTTAA 58.936 45.455 24.33 0.00 39.32 2.01
1050 1062 0.571197 GAGACGGACGATTTTAGCGC 59.429 55.000 0.00 0.00 0.00 5.92
1222 1238 1.985116 GAAGTCCTCGTGGAGCCCT 60.985 63.158 6.43 0.00 44.16 5.19
1543 1559 1.816537 GAGGTCGAGCAGGTGCATA 59.183 57.895 18.15 0.00 45.16 3.14
1643 1659 1.155424 TCGCGTTTGAGGTGGACAAC 61.155 55.000 5.77 0.00 0.00 3.32
1644 1660 1.144276 TCGCGTTTGAGGTGGACAA 59.856 52.632 5.77 0.00 0.00 3.18
1669 1685 3.257561 CCGTCGATGGAGCAAGCG 61.258 66.667 19.48 0.00 0.00 4.68
1671 1687 2.892425 GGCCGTCGATGGAGCAAG 60.892 66.667 28.06 0.00 0.00 4.01
1672 1688 3.390521 AGGCCGTCGATGGAGCAA 61.391 61.111 28.06 0.00 0.00 3.91
1674 1690 3.157217 ATCAGGCCGTCGATGGAGC 62.157 63.158 28.06 12.46 0.00 4.70
1777 1793 1.337384 ACTGGTGGCCATAGCGATCA 61.337 55.000 9.72 0.00 41.24 2.92
1781 1797 2.514592 CCACTGGTGGCCATAGCG 60.515 66.667 9.72 4.77 44.73 4.26
1909 1925 1.669440 GAAGACGTACACCAGGCCA 59.331 57.895 5.01 0.00 0.00 5.36
1912 1928 1.214589 CGGGAAGACGTACACCAGG 59.785 63.158 0.00 0.00 0.00 4.45
1913 1929 1.214589 CCGGGAAGACGTACACCAG 59.785 63.158 0.00 0.00 0.00 4.00
1990 2006 1.448717 GCTCTTCAAGCCCGAGGTC 60.449 63.158 0.00 0.00 45.92 3.85
2038 2054 3.963687 CTCCACCTGCATCAGCGCA 62.964 63.158 11.47 0.00 46.23 6.09
2245 2288 3.798954 CTCGCCGCCCTTGAGATCC 62.799 68.421 0.00 0.00 31.31 3.36
2246 2289 2.279784 CTCGCCGCCCTTGAGATC 60.280 66.667 0.00 0.00 31.31 2.75
2247 2290 2.759973 TCTCGCCGCCCTTGAGAT 60.760 61.111 0.00 0.00 34.00 2.75
2248 2291 3.760035 GTCTCGCCGCCCTTGAGA 61.760 66.667 0.00 0.00 36.46 3.27
2266 2309 4.807039 CTGTACGCCCGAACCCCG 62.807 72.222 0.00 0.00 38.18 5.73
2383 2426 7.387119 TGATCAGGATCAAACTCATTTTCAG 57.613 36.000 9.43 0.00 44.14 3.02
2462 2506 2.217429 AACGACGCCTTGCAATTTTT 57.783 40.000 0.00 0.00 0.00 1.94
2463 2507 1.857837 CAAACGACGCCTTGCAATTTT 59.142 42.857 0.00 0.00 0.00 1.82
2464 2508 1.066303 TCAAACGACGCCTTGCAATTT 59.934 42.857 0.00 0.00 0.00 1.82
2465 2509 0.665835 TCAAACGACGCCTTGCAATT 59.334 45.000 0.00 0.00 0.00 2.32
2466 2510 0.665835 TTCAAACGACGCCTTGCAAT 59.334 45.000 0.00 0.00 0.00 3.56
2467 2511 0.665835 ATTCAAACGACGCCTTGCAA 59.334 45.000 0.00 0.00 0.00 4.08
2468 2512 0.665835 AATTCAAACGACGCCTTGCA 59.334 45.000 0.00 0.00 0.00 4.08
2469 2513 1.069227 AGAATTCAAACGACGCCTTGC 60.069 47.619 8.44 0.00 0.00 4.01
2470 2514 2.969443 AGAATTCAAACGACGCCTTG 57.031 45.000 8.44 0.00 0.00 3.61
2471 2515 2.604614 GCAAGAATTCAAACGACGCCTT 60.605 45.455 8.44 0.00 0.00 4.35
2472 2516 1.069227 GCAAGAATTCAAACGACGCCT 60.069 47.619 8.44 0.00 0.00 5.52
2473 2517 1.327507 GCAAGAATTCAAACGACGCC 58.672 50.000 8.44 0.00 0.00 5.68
2474 2518 2.031037 TGCAAGAATTCAAACGACGC 57.969 45.000 8.44 0.09 0.00 5.19
2475 2519 5.559227 TCATATGCAAGAATTCAAACGACG 58.441 37.500 8.44 0.00 0.00 5.12
2476 2520 6.546395 ACTCATATGCAAGAATTCAAACGAC 58.454 36.000 8.44 0.00 0.00 4.34
2481 2525 5.334319 CGCAACTCATATGCAAGAATTCAA 58.666 37.500 8.44 0.00 44.01 2.69
2488 2532 0.734309 TGCCGCAACTCATATGCAAG 59.266 50.000 0.00 0.00 44.01 4.01
2520 2564 4.083802 GCATACTGAACGCAAGAAGAGTTT 60.084 41.667 0.00 0.00 40.50 2.66
2522 2566 2.996621 GCATACTGAACGCAAGAAGAGT 59.003 45.455 0.00 0.00 43.62 3.24
2544 2588 1.787155 CACTGCACAACTCGTAGACAC 59.213 52.381 0.00 0.00 0.00 3.67
2545 2589 1.868109 GCACTGCACAACTCGTAGACA 60.868 52.381 0.00 0.00 0.00 3.41
2546 2590 0.784778 GCACTGCACAACTCGTAGAC 59.215 55.000 0.00 0.00 0.00 2.59
2547 2591 0.673985 AGCACTGCACAACTCGTAGA 59.326 50.000 3.30 0.00 0.00 2.59
2548 2592 1.063806 GAGCACTGCACAACTCGTAG 58.936 55.000 3.30 0.00 0.00 3.51
2549 2593 0.387565 TGAGCACTGCACAACTCGTA 59.612 50.000 3.30 0.00 31.64 3.43
2550 2594 0.250038 ATGAGCACTGCACAACTCGT 60.250 50.000 5.19 0.00 32.39 4.18
2551 2595 0.441533 GATGAGCACTGCACAACTCG 59.558 55.000 5.19 0.00 32.39 4.18
2552 2596 0.801251 GGATGAGCACTGCACAACTC 59.199 55.000 5.19 0.00 32.39 3.01
2553 2597 0.109153 TGGATGAGCACTGCACAACT 59.891 50.000 5.19 0.00 32.39 3.16
2554 2598 0.953727 TTGGATGAGCACTGCACAAC 59.046 50.000 5.19 2.86 32.39 3.32
2555 2599 1.610038 CTTTGGATGAGCACTGCACAA 59.390 47.619 5.19 0.00 32.39 3.33
2556 2600 1.241165 CTTTGGATGAGCACTGCACA 58.759 50.000 3.47 3.47 33.26 4.57
2557 2601 1.198637 GACTTTGGATGAGCACTGCAC 59.801 52.381 3.30 0.00 0.00 4.57
2558 2602 1.527034 GACTTTGGATGAGCACTGCA 58.473 50.000 3.30 0.00 0.00 4.41
2559 2603 0.807496 GGACTTTGGATGAGCACTGC 59.193 55.000 0.00 0.00 0.00 4.40
2560 2604 2.289882 TGAGGACTTTGGATGAGCACTG 60.290 50.000 0.00 0.00 0.00 3.66
2561 2605 1.980765 TGAGGACTTTGGATGAGCACT 59.019 47.619 0.00 0.00 0.00 4.40
2562 2606 2.027745 TCTGAGGACTTTGGATGAGCAC 60.028 50.000 0.00 0.00 0.00 4.40
2563 2607 2.235650 CTCTGAGGACTTTGGATGAGCA 59.764 50.000 0.00 0.00 0.00 4.26
2564 2608 2.903798 CTCTGAGGACTTTGGATGAGC 58.096 52.381 0.00 0.00 0.00 4.26
2565 2609 2.235650 TGCTCTGAGGACTTTGGATGAG 59.764 50.000 6.83 0.00 0.00 2.90
2566 2610 2.259917 TGCTCTGAGGACTTTGGATGA 58.740 47.619 6.83 0.00 0.00 2.92
2567 2611 2.775911 TGCTCTGAGGACTTTGGATG 57.224 50.000 6.83 0.00 0.00 3.51
2568 2612 2.575279 ACATGCTCTGAGGACTTTGGAT 59.425 45.455 6.83 0.00 0.00 3.41
2569 2613 1.980765 ACATGCTCTGAGGACTTTGGA 59.019 47.619 6.83 0.00 0.00 3.53
2570 2614 2.027377 AGACATGCTCTGAGGACTTTGG 60.027 50.000 6.83 0.00 0.00 3.28
2571 2615 3.331478 AGACATGCTCTGAGGACTTTG 57.669 47.619 6.83 1.81 0.00 2.77
2572 2616 4.284490 TGTTAGACATGCTCTGAGGACTTT 59.716 41.667 6.83 0.00 0.00 2.66
2573 2617 3.834813 TGTTAGACATGCTCTGAGGACTT 59.165 43.478 6.83 0.00 0.00 3.01
2574 2618 3.435275 TGTTAGACATGCTCTGAGGACT 58.565 45.455 6.83 0.02 0.00 3.85
2575 2619 3.445450 TCTGTTAGACATGCTCTGAGGAC 59.555 47.826 6.83 0.00 0.00 3.85
2576 2620 3.698539 CTCTGTTAGACATGCTCTGAGGA 59.301 47.826 6.83 3.64 0.00 3.71
2577 2621 3.737663 GCTCTGTTAGACATGCTCTGAGG 60.738 52.174 6.83 0.00 0.00 3.86
2681 2782 2.665000 CGGGGCACAGATCAGTGT 59.335 61.111 18.25 0.90 41.52 3.55
2837 2938 3.040795 GTGATGATGATCATTTGCACGC 58.959 45.455 10.14 0.00 40.78 5.34
2932 3034 0.398522 AGTGGTGGAGGCGATGGATA 60.399 55.000 0.00 0.00 0.00 2.59
2933 3035 1.690219 GAGTGGTGGAGGCGATGGAT 61.690 60.000 0.00 0.00 0.00 3.41
3331 3437 6.144845 AGGGAAAAGAAAGGATGAAGATGA 57.855 37.500 0.00 0.00 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.