Multiple sequence alignment - TraesCS4D01G038500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G038500 chr4D 100.000 5582 0 0 1 5582 16590030 16584449 0.000000e+00 10309.0
1 TraesCS4D01G038500 chr4D 98.903 547 5 1 1543 2088 151332174 151331628 0.000000e+00 976.0
2 TraesCS4D01G038500 chr4D 90.441 136 13 0 1108 1243 16610464 16610329 4.440000e-41 180.0
3 TraesCS4D01G038500 chr4D 95.522 67 3 0 2018 2084 151332197 151332263 2.130000e-19 108.0
4 TraesCS4D01G038500 chr4D 100.000 49 0 0 179 227 16589806 16589758 2.140000e-14 91.6
5 TraesCS4D01G038500 chr4D 100.000 49 0 0 225 273 16589852 16589804 2.140000e-14 91.6
6 TraesCS4D01G038500 chr4A 93.359 1280 64 11 3321 4583 583952135 583953410 0.000000e+00 1873.0
7 TraesCS4D01G038500 chr4A 94.632 857 30 10 4728 5582 583953488 583954330 0.000000e+00 1314.0
8 TraesCS4D01G038500 chr4A 88.523 1124 62 17 1745 2844 583950484 583951564 0.000000e+00 1299.0
9 TraesCS4D01G038500 chr4A 82.172 976 63 52 323 1269 583948803 583949696 0.000000e+00 736.0
10 TraesCS4D01G038500 chr4A 94.776 402 13 4 2890 3289 583951574 583951969 2.210000e-173 619.0
11 TraesCS4D01G038500 chr4A 97.297 259 7 0 5324 5582 583958338 583958596 1.850000e-119 440.0
12 TraesCS4D01G038500 chr4A 86.131 137 19 0 1108 1244 583936225 583936361 1.250000e-31 148.0
13 TraesCS4D01G038500 chr4A 100.000 37 0 0 4674 4710 583953450 583953486 1.000000e-07 69.4
14 TraesCS4D01G038500 chr4A 97.297 37 1 0 4637 4673 583953441 583953477 4.670000e-06 63.9
15 TraesCS4D01G038500 chr4B 91.947 1217 58 15 3396 4585 28415762 28414559 0.000000e+00 1668.0
16 TraesCS4D01G038500 chr4B 95.425 918 31 8 4674 5582 28414525 28413610 0.000000e+00 1452.0
17 TraesCS4D01G038500 chr4B 90.843 830 49 7 2033 2844 28416970 28416150 0.000000e+00 1086.0
18 TraesCS4D01G038500 chr4B 86.358 821 55 30 516 1317 28418241 28417459 0.000000e+00 843.0
19 TraesCS4D01G038500 chr4B 95.165 393 15 4 2896 3284 28416134 28415742 7.950000e-173 617.0
20 TraesCS4D01G038500 chr4B 86.458 192 20 3 1438 1623 28417448 28417257 7.330000e-49 206.0
21 TraesCS4D01G038500 chr4B 93.548 124 8 0 431 554 28418359 28418236 9.550000e-43 185.0
22 TraesCS4D01G038500 chr4B 89.706 136 14 0 1108 1243 28493579 28493444 2.070000e-39 174.0
23 TraesCS4D01G038500 chr4B 97.917 48 1 0 4626 4673 28414545 28414498 3.580000e-12 84.2
24 TraesCS4D01G038500 chr3A 80.960 625 88 20 3419 4033 467076352 467075749 3.050000e-127 466.0
25 TraesCS4D01G038500 chr3A 86.133 375 41 4 4299 4673 467074277 467073914 1.460000e-105 394.0
26 TraesCS4D01G038500 chr3A 77.970 404 52 21 2448 2837 467080288 467079908 9.420000e-53 219.0
27 TraesCS4D01G038500 chr3A 82.775 209 34 2 3083 3289 467076782 467076574 9.550000e-43 185.0
28 TraesCS4D01G038500 chr3A 90.909 132 12 0 1102 1233 467080985 467080854 1.600000e-40 178.0
29 TraesCS4D01G038500 chr3A 93.976 83 5 0 2097 2179 467080596 467080514 5.870000e-25 126.0
30 TraesCS4D01G038500 chr3B 78.590 766 115 31 3455 4201 447937558 447936823 1.420000e-125 460.0
31 TraesCS4D01G038500 chr3B 85.950 363 41 3 4299 4661 447936683 447936331 4.080000e-101 379.0
32 TraesCS4D01G038500 chr3B 84.062 320 50 1 2960 3278 447939467 447939148 1.950000e-79 307.0
33 TraesCS4D01G038500 chr3B 85.385 260 25 5 2409 2656 447939993 447939735 2.000000e-64 257.0
34 TraesCS4D01G038500 chr3B 81.191 319 49 6 4224 4540 472879578 472879269 4.320000e-61 246.0
35 TraesCS4D01G038500 chr3B 90.152 132 13 0 1102 1233 447940647 447940516 7.430000e-39 172.0
36 TraesCS4D01G038500 chr3B 92.857 84 6 0 2097 2180 447940251 447940168 7.590000e-24 122.0
37 TraesCS4D01G038500 chr3D 85.600 375 44 3 4299 4673 348134470 348134106 8.770000e-103 385.0
38 TraesCS4D01G038500 chr3D 80.108 553 66 22 3668 4201 348135136 348134609 6.830000e-99 372.0
39 TraesCS4D01G038500 chr3D 84.985 333 48 2 2959 3289 348136105 348135773 2.490000e-88 337.0
40 TraesCS4D01G038500 chr3D 81.470 313 31 12 2409 2709 348137099 348136802 1.210000e-56 231.0
41 TraesCS4D01G038500 chr3D 90.152 132 13 0 1102 1233 348139816 348139685 7.430000e-39 172.0
42 TraesCS4D01G038500 chr3D 96.386 83 3 0 2097 2179 348137354 348137272 2.710000e-28 137.0
43 TraesCS4D01G038500 chr1B 89.308 159 16 1 1 159 635795315 635795472 1.230000e-46 198.0
44 TraesCS4D01G038500 chr5A 82.301 226 39 1 3622 3847 220802925 220802701 1.590000e-45 195.0
45 TraesCS4D01G038500 chr7A 87.421 159 18 2 1 159 710956256 710956100 1.240000e-41 182.0
46 TraesCS4D01G038500 chr7A 84.906 159 21 3 2 159 660548191 660548347 2.080000e-34 158.0
47 TraesCS4D01G038500 chr5B 87.821 156 17 2 1 155 213246808 213246962 1.240000e-41 182.0
48 TraesCS4D01G038500 chr5B 85.535 159 21 2 1 159 598052476 598052632 1.240000e-36 165.0
49 TraesCS4D01G038500 chr2B 87.919 149 17 1 1 149 477155184 477155331 2.070000e-39 174.0
50 TraesCS4D01G038500 chr2A 87.671 146 17 1 1 146 576075874 576075730 9.620000e-38 169.0
51 TraesCS4D01G038500 chr6B 87.162 148 18 1 2 149 169098228 169098374 3.460000e-37 167.0
52 TraesCS4D01G038500 chr6D 85.443 158 21 2 2 159 256320315 256320160 4.470000e-36 163.0
53 TraesCS4D01G038500 chr2D 84.677 124 15 3 1109 1230 80038924 80038803 2.730000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G038500 chr4D 16584449 16590030 5581 True 3497.400000 10309 100.000000 1 5582 3 chr4D.!!$R3 5581
1 TraesCS4D01G038500 chr4D 151331628 151332174 546 True 976.000000 976 98.903000 1543 2088 1 chr4D.!!$R2 545
2 TraesCS4D01G038500 chr4A 583948803 583954330 5527 False 853.471429 1873 92.965571 323 5582 7 chr4A.!!$F3 5259
3 TraesCS4D01G038500 chr4B 28413610 28418359 4749 True 767.650000 1668 92.207625 431 5582 8 chr4B.!!$R2 5151
4 TraesCS4D01G038500 chr3A 467073914 467080985 7071 True 261.333333 466 85.453833 1102 4673 6 chr3A.!!$R1 3571
5 TraesCS4D01G038500 chr3B 447936331 447940647 4316 True 282.833333 460 86.166000 1102 4661 6 chr3B.!!$R2 3559
6 TraesCS4D01G038500 chr3D 348134106 348139816 5710 True 272.333333 385 86.450167 1102 4673 6 chr3D.!!$R1 3571

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
36 37 0.033504 GATGACACGTGACAGGTGGT 59.966 55.000 26.93 15.35 38.22 4.16 F
180 181 0.035056 CTTGTGGGACTAGGGCCTTG 60.035 60.000 13.45 13.57 0.00 3.61 F
289 290 0.035152 TTGCCAGCGATGTTGGATCT 60.035 50.000 0.00 0.00 35.94 2.75 F
290 291 0.035152 TGCCAGCGATGTTGGATCTT 60.035 50.000 0.00 0.00 35.94 2.40 F
1332 1415 0.106519 AGTGGCCAGTGAGTTGCTTT 60.107 50.000 13.75 0.00 0.00 3.51 F
1333 1416 0.746659 GTGGCCAGTGAGTTGCTTTT 59.253 50.000 5.11 0.00 0.00 2.27 F
1354 1437 0.770557 TTTAGGGGTGGCCAGTGAGT 60.771 55.000 5.11 0.00 0.00 3.41 F
2406 4875 0.739462 TGCGCGGAACTAACCATCTG 60.739 55.000 8.83 0.00 0.00 2.90 F
3098 9051 1.410365 GGGTCGAATCCTCCTCAGAGA 60.410 57.143 0.00 0.00 43.39 3.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1276 1359 0.111061 TGGTGCCAAGCAAGAGACAT 59.889 50.000 0.00 0.00 41.47 3.06 R
1334 1417 0.404040 CTCACTGGCCACCCCTAAAA 59.596 55.000 0.00 0.00 0.00 1.52 R
1343 1426 0.606401 GCTAAGCAACTCACTGGCCA 60.606 55.000 4.71 4.71 0.00 5.36 R
1490 3128 0.612744 TGTGCATGGATGAGGTCGAA 59.387 50.000 0.00 0.00 0.00 3.71 R
2185 4642 0.887387 TGCTACGGTTCCAGCCAAAC 60.887 55.000 0.00 0.00 36.95 2.93 R
2406 4875 1.609072 GGAGGTTTCACAGGTTGAAGC 59.391 52.381 0.00 0.00 45.22 3.86 R
2458 4944 2.094854 GCCTGCTCAGTTTTCATGGAAG 60.095 50.000 0.00 0.00 0.00 3.46 R
3513 10948 0.322906 GGAAGTCCCTGGCTCTTTGG 60.323 60.000 0.00 0.00 0.00 3.28 R
4875 13787 0.612174 ACTTAGGCAGCGGACAGAGA 60.612 55.000 0.00 0.00 0.00 3.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.826702 GGGGCCTGGTGGTATACG 59.173 66.667 0.84 0.00 35.27 3.06
18 19 1.763256 GGGGCCTGGTGGTATACGA 60.763 63.158 0.84 0.00 35.27 3.43
19 20 1.125711 GGGGCCTGGTGGTATACGAT 61.126 60.000 0.84 0.00 35.27 3.73
20 21 0.034896 GGGCCTGGTGGTATACGATG 59.965 60.000 0.84 0.00 35.27 3.84
21 22 1.045407 GGCCTGGTGGTATACGATGA 58.955 55.000 0.00 0.00 35.27 2.92
22 23 1.270147 GGCCTGGTGGTATACGATGAC 60.270 57.143 0.00 0.00 35.27 3.06
23 24 1.411246 GCCTGGTGGTATACGATGACA 59.589 52.381 0.00 0.00 35.27 3.58
24 25 2.802057 GCCTGGTGGTATACGATGACAC 60.802 54.545 0.00 0.00 35.27 3.67
25 26 2.543031 CCTGGTGGTATACGATGACACG 60.543 54.545 0.00 0.00 39.31 4.49
27 28 2.159352 TGGTGGTATACGATGACACGTG 60.159 50.000 15.48 15.48 46.02 4.49
28 29 2.097954 GGTGGTATACGATGACACGTGA 59.902 50.000 25.01 0.00 46.02 4.35
29 30 3.103738 GTGGTATACGATGACACGTGAC 58.896 50.000 25.01 17.68 46.02 3.67
30 31 2.748532 TGGTATACGATGACACGTGACA 59.251 45.455 25.01 23.44 46.02 3.58
31 32 3.181504 TGGTATACGATGACACGTGACAG 60.182 47.826 25.01 13.79 46.02 3.51
32 33 2.561733 ATACGATGACACGTGACAGG 57.438 50.000 25.01 19.49 46.02 4.00
33 34 1.241165 TACGATGACACGTGACAGGT 58.759 50.000 25.01 23.69 46.02 4.00
34 35 0.318699 ACGATGACACGTGACAGGTG 60.319 55.000 25.01 23.17 44.84 4.00
35 36 1.008875 CGATGACACGTGACAGGTGG 61.009 60.000 26.93 5.90 38.22 4.61
36 37 0.033504 GATGACACGTGACAGGTGGT 59.966 55.000 26.93 15.35 38.22 4.16
37 38 0.468226 ATGACACGTGACAGGTGGTT 59.532 50.000 26.93 11.32 38.22 3.67
38 39 0.179094 TGACACGTGACAGGTGGTTC 60.179 55.000 26.93 18.37 38.22 3.62
39 40 1.213094 GACACGTGACAGGTGGTTCG 61.213 60.000 26.93 5.63 38.22 3.95
40 41 1.227147 CACGTGACAGGTGGTTCGT 60.227 57.895 18.43 0.00 39.56 3.85
41 42 0.808453 CACGTGACAGGTGGTTCGTT 60.808 55.000 18.43 0.00 37.92 3.85
42 43 0.529119 ACGTGACAGGTGGTTCGTTC 60.529 55.000 0.00 0.00 37.16 3.95
43 44 0.528901 CGTGACAGGTGGTTCGTTCA 60.529 55.000 0.00 0.00 0.00 3.18
44 45 1.217882 GTGACAGGTGGTTCGTTCAG 58.782 55.000 0.00 0.00 0.00 3.02
45 46 0.828022 TGACAGGTGGTTCGTTCAGT 59.172 50.000 0.00 0.00 0.00 3.41
46 47 1.217882 GACAGGTGGTTCGTTCAGTG 58.782 55.000 0.00 0.00 0.00 3.66
47 48 0.828022 ACAGGTGGTTCGTTCAGTGA 59.172 50.000 0.00 0.00 0.00 3.41
48 49 1.416401 ACAGGTGGTTCGTTCAGTGAT 59.584 47.619 0.00 0.00 0.00 3.06
49 50 2.158813 ACAGGTGGTTCGTTCAGTGATT 60.159 45.455 0.00 0.00 0.00 2.57
50 51 2.480419 CAGGTGGTTCGTTCAGTGATTC 59.520 50.000 0.00 0.00 0.00 2.52
51 52 2.368875 AGGTGGTTCGTTCAGTGATTCT 59.631 45.455 0.00 0.00 0.00 2.40
52 53 2.737252 GGTGGTTCGTTCAGTGATTCTC 59.263 50.000 0.00 0.00 0.00 2.87
53 54 2.737252 GTGGTTCGTTCAGTGATTCTCC 59.263 50.000 0.00 0.00 0.00 3.71
54 55 1.993370 GGTTCGTTCAGTGATTCTCCG 59.007 52.381 0.00 0.00 0.00 4.63
55 56 2.609737 GGTTCGTTCAGTGATTCTCCGT 60.610 50.000 0.00 0.00 0.00 4.69
56 57 2.347697 TCGTTCAGTGATTCTCCGTG 57.652 50.000 0.00 0.00 0.00 4.94
57 58 1.883926 TCGTTCAGTGATTCTCCGTGA 59.116 47.619 0.00 0.00 0.00 4.35
58 59 1.986378 CGTTCAGTGATTCTCCGTGAC 59.014 52.381 0.00 0.00 0.00 3.67
59 60 1.986378 GTTCAGTGATTCTCCGTGACG 59.014 52.381 0.00 0.00 0.00 4.35
60 61 0.109272 TCAGTGATTCTCCGTGACGC 60.109 55.000 0.00 0.00 0.00 5.19
61 62 1.078759 CAGTGATTCTCCGTGACGCC 61.079 60.000 0.00 0.00 0.00 5.68
62 63 1.080093 GTGATTCTCCGTGACGCCA 60.080 57.895 0.00 0.00 0.00 5.69
63 64 0.669318 GTGATTCTCCGTGACGCCAA 60.669 55.000 0.00 0.00 0.00 4.52
64 65 0.669318 TGATTCTCCGTGACGCCAAC 60.669 55.000 0.00 0.00 0.00 3.77
65 66 1.359459 GATTCTCCGTGACGCCAACC 61.359 60.000 0.00 0.00 0.00 3.77
66 67 1.827399 ATTCTCCGTGACGCCAACCT 61.827 55.000 0.00 0.00 0.00 3.50
67 68 2.030562 CTCCGTGACGCCAACCTT 59.969 61.111 0.00 0.00 0.00 3.50
68 69 2.280524 TCCGTGACGCCAACCTTG 60.281 61.111 0.00 0.00 0.00 3.61
69 70 4.025401 CCGTGACGCCAACCTTGC 62.025 66.667 0.00 0.00 0.00 4.01
70 71 4.025401 CGTGACGCCAACCTTGCC 62.025 66.667 0.00 0.00 0.00 4.52
71 72 2.594592 GTGACGCCAACCTTGCCT 60.595 61.111 0.00 0.00 0.00 4.75
72 73 1.302192 GTGACGCCAACCTTGCCTA 60.302 57.895 0.00 0.00 0.00 3.93
73 74 1.003839 TGACGCCAACCTTGCCTAG 60.004 57.895 0.00 0.00 0.00 3.02
74 75 1.003718 GACGCCAACCTTGCCTAGT 60.004 57.895 0.00 0.00 0.00 2.57
75 76 0.605589 GACGCCAACCTTGCCTAGTT 60.606 55.000 0.00 0.00 0.00 2.24
76 77 0.179001 ACGCCAACCTTGCCTAGTTT 60.179 50.000 0.00 0.00 0.00 2.66
77 78 0.521735 CGCCAACCTTGCCTAGTTTC 59.478 55.000 0.00 0.00 0.00 2.78
78 79 1.882352 CGCCAACCTTGCCTAGTTTCT 60.882 52.381 0.00 0.00 0.00 2.52
79 80 2.239400 GCCAACCTTGCCTAGTTTCTT 58.761 47.619 0.00 0.00 0.00 2.52
80 81 2.229062 GCCAACCTTGCCTAGTTTCTTC 59.771 50.000 0.00 0.00 0.00 2.87
81 82 3.486383 CCAACCTTGCCTAGTTTCTTCA 58.514 45.455 0.00 0.00 0.00 3.02
82 83 4.082125 CCAACCTTGCCTAGTTTCTTCAT 58.918 43.478 0.00 0.00 0.00 2.57
83 84 5.253330 CCAACCTTGCCTAGTTTCTTCATA 58.747 41.667 0.00 0.00 0.00 2.15
84 85 5.888161 CCAACCTTGCCTAGTTTCTTCATAT 59.112 40.000 0.00 0.00 0.00 1.78
85 86 6.378280 CCAACCTTGCCTAGTTTCTTCATATT 59.622 38.462 0.00 0.00 0.00 1.28
86 87 7.093771 CCAACCTTGCCTAGTTTCTTCATATTT 60.094 37.037 0.00 0.00 0.00 1.40
87 88 7.631717 ACCTTGCCTAGTTTCTTCATATTTC 57.368 36.000 0.00 0.00 0.00 2.17
88 89 7.175104 ACCTTGCCTAGTTTCTTCATATTTCA 58.825 34.615 0.00 0.00 0.00 2.69
89 90 7.836183 ACCTTGCCTAGTTTCTTCATATTTCAT 59.164 33.333 0.00 0.00 0.00 2.57
90 91 8.348507 CCTTGCCTAGTTTCTTCATATTTCATC 58.651 37.037 0.00 0.00 0.00 2.92
91 92 7.482654 TGCCTAGTTTCTTCATATTTCATCG 57.517 36.000 0.00 0.00 0.00 3.84
92 93 7.047891 TGCCTAGTTTCTTCATATTTCATCGT 58.952 34.615 0.00 0.00 0.00 3.73
93 94 7.224753 TGCCTAGTTTCTTCATATTTCATCGTC 59.775 37.037 0.00 0.00 0.00 4.20
94 95 7.567771 GCCTAGTTTCTTCATATTTCATCGTCG 60.568 40.741 0.00 0.00 0.00 5.12
95 96 6.589830 AGTTTCTTCATATTTCATCGTCGG 57.410 37.500 0.00 0.00 0.00 4.79
96 97 6.338146 AGTTTCTTCATATTTCATCGTCGGA 58.662 36.000 0.00 0.00 0.00 4.55
97 98 6.477033 AGTTTCTTCATATTTCATCGTCGGAG 59.523 38.462 0.00 0.00 0.00 4.63
98 99 5.515797 TCTTCATATTTCATCGTCGGAGT 57.484 39.130 0.00 0.00 0.00 3.85
99 100 5.520632 TCTTCATATTTCATCGTCGGAGTC 58.479 41.667 0.00 0.00 0.00 3.36
100 101 3.885358 TCATATTTCATCGTCGGAGTCG 58.115 45.455 0.00 0.00 41.01 4.18
101 102 2.768833 TATTTCATCGTCGGAGTCGG 57.231 50.000 0.00 0.00 39.90 4.79
102 103 1.100510 ATTTCATCGTCGGAGTCGGA 58.899 50.000 0.00 0.00 39.90 4.55
103 104 0.450583 TTTCATCGTCGGAGTCGGAG 59.549 55.000 0.00 0.00 39.90 4.63
104 105 1.989966 TTCATCGTCGGAGTCGGAGC 61.990 60.000 0.00 0.00 39.90 4.70
105 106 2.124653 ATCGTCGGAGTCGGAGCT 60.125 61.111 0.00 0.00 39.90 4.09
106 107 2.473760 ATCGTCGGAGTCGGAGCTG 61.474 63.158 0.00 0.00 39.90 4.24
107 108 4.838486 CGTCGGAGTCGGAGCTGC 62.838 72.222 0.00 0.00 35.06 5.25
110 111 4.421479 CGGAGTCGGAGCTGCGTT 62.421 66.667 27.20 16.63 43.64 4.84
111 112 2.048127 GGAGTCGGAGCTGCGTTT 60.048 61.111 27.20 16.25 0.00 3.60
112 113 2.383527 GGAGTCGGAGCTGCGTTTG 61.384 63.158 27.20 0.00 0.00 2.93
113 114 1.664965 GAGTCGGAGCTGCGTTTGT 60.665 57.895 27.20 10.28 0.00 2.83
114 115 1.618640 GAGTCGGAGCTGCGTTTGTC 61.619 60.000 27.20 15.01 0.00 3.18
115 116 1.664965 GTCGGAGCTGCGTTTGTCT 60.665 57.895 27.20 0.00 0.00 3.41
116 117 1.372997 TCGGAGCTGCGTTTGTCTC 60.373 57.895 27.20 0.00 0.00 3.36
117 118 2.720758 CGGAGCTGCGTTTGTCTCG 61.721 63.158 20.53 0.00 0.00 4.04
118 119 1.664965 GGAGCTGCGTTTGTCTCGT 60.665 57.895 0.00 0.00 0.00 4.18
119 120 1.488957 GAGCTGCGTTTGTCTCGTG 59.511 57.895 0.00 0.00 0.00 4.35
120 121 1.215655 GAGCTGCGTTTGTCTCGTGT 61.216 55.000 0.00 0.00 0.00 4.49
121 122 1.083401 GCTGCGTTTGTCTCGTGTG 60.083 57.895 0.00 0.00 0.00 3.82
122 123 1.564622 CTGCGTTTGTCTCGTGTGG 59.435 57.895 0.00 0.00 0.00 4.17
123 124 0.874175 CTGCGTTTGTCTCGTGTGGA 60.874 55.000 0.00 0.00 0.00 4.02
124 125 0.249699 TGCGTTTGTCTCGTGTGGAT 60.250 50.000 0.00 0.00 0.00 3.41
125 126 0.438830 GCGTTTGTCTCGTGTGGATC 59.561 55.000 0.00 0.00 0.00 3.36
126 127 0.708370 CGTTTGTCTCGTGTGGATCG 59.292 55.000 0.00 0.00 0.00 3.69
127 128 1.779569 GTTTGTCTCGTGTGGATCGT 58.220 50.000 0.00 0.00 0.00 3.73
128 129 2.666344 CGTTTGTCTCGTGTGGATCGTA 60.666 50.000 0.00 0.00 0.00 3.43
129 130 3.508762 GTTTGTCTCGTGTGGATCGTAT 58.491 45.455 0.00 0.00 0.00 3.06
130 131 2.844122 TGTCTCGTGTGGATCGTATG 57.156 50.000 0.00 0.00 0.00 2.39
131 132 1.404035 TGTCTCGTGTGGATCGTATGG 59.596 52.381 0.00 0.00 0.00 2.74
132 133 1.674441 GTCTCGTGTGGATCGTATGGA 59.326 52.381 0.00 0.00 0.00 3.41
133 134 1.947456 TCTCGTGTGGATCGTATGGAG 59.053 52.381 0.00 0.00 0.00 3.86
134 135 1.676529 CTCGTGTGGATCGTATGGAGT 59.323 52.381 0.00 0.00 0.00 3.85
135 136 1.404035 TCGTGTGGATCGTATGGAGTG 59.596 52.381 0.00 0.00 0.00 3.51
136 137 1.134367 CGTGTGGATCGTATGGAGTGT 59.866 52.381 0.00 0.00 0.00 3.55
137 138 2.416836 CGTGTGGATCGTATGGAGTGTT 60.417 50.000 0.00 0.00 0.00 3.32
138 139 2.930040 GTGTGGATCGTATGGAGTGTTG 59.070 50.000 0.00 0.00 0.00 3.33
139 140 2.565391 TGTGGATCGTATGGAGTGTTGT 59.435 45.455 0.00 0.00 0.00 3.32
140 141 2.930040 GTGGATCGTATGGAGTGTTGTG 59.070 50.000 0.00 0.00 0.00 3.33
141 142 1.933853 GGATCGTATGGAGTGTTGTGC 59.066 52.381 0.00 0.00 0.00 4.57
142 143 2.418746 GGATCGTATGGAGTGTTGTGCT 60.419 50.000 0.00 0.00 0.00 4.40
143 144 2.078849 TCGTATGGAGTGTTGTGCTG 57.921 50.000 0.00 0.00 0.00 4.41
144 145 0.443869 CGTATGGAGTGTTGTGCTGC 59.556 55.000 0.00 0.00 0.00 5.25
145 146 1.522668 GTATGGAGTGTTGTGCTGCA 58.477 50.000 0.00 0.00 38.60 4.41
146 147 1.466167 GTATGGAGTGTTGTGCTGCAG 59.534 52.381 10.11 10.11 37.70 4.41
147 148 1.521450 ATGGAGTGTTGTGCTGCAGC 61.521 55.000 31.89 31.89 37.70 5.25
148 149 1.895707 GGAGTGTTGTGCTGCAGCT 60.896 57.895 36.61 17.15 42.66 4.24
149 150 1.450531 GGAGTGTTGTGCTGCAGCTT 61.451 55.000 36.61 14.81 42.66 3.74
150 151 0.383231 GAGTGTTGTGCTGCAGCTTT 59.617 50.000 36.61 15.48 42.66 3.51
151 152 0.819582 AGTGTTGTGCTGCAGCTTTT 59.180 45.000 36.61 14.18 42.66 2.27
152 153 0.925466 GTGTTGTGCTGCAGCTTTTG 59.075 50.000 36.61 1.54 42.66 2.44
153 154 0.179105 TGTTGTGCTGCAGCTTTTGG 60.179 50.000 36.61 0.70 42.66 3.28
154 155 0.877213 GTTGTGCTGCAGCTTTTGGG 60.877 55.000 36.61 0.00 42.66 4.12
155 156 1.329171 TTGTGCTGCAGCTTTTGGGT 61.329 50.000 36.61 0.00 42.66 4.51
156 157 1.006922 GTGCTGCAGCTTTTGGGTC 60.007 57.895 36.61 14.15 42.66 4.46
157 158 1.152694 TGCTGCAGCTTTTGGGTCT 60.153 52.632 36.61 0.00 42.66 3.85
158 159 1.288127 GCTGCAGCTTTTGGGTCTG 59.712 57.895 31.33 0.00 38.21 3.51
159 160 1.962144 CTGCAGCTTTTGGGTCTGG 59.038 57.895 0.00 0.00 0.00 3.86
160 161 0.825010 CTGCAGCTTTTGGGTCTGGT 60.825 55.000 0.00 0.00 0.00 4.00
161 162 0.823356 TGCAGCTTTTGGGTCTGGTC 60.823 55.000 0.00 0.00 0.00 4.02
162 163 0.538287 GCAGCTTTTGGGTCTGGTCT 60.538 55.000 0.00 0.00 0.00 3.85
163 164 1.986882 CAGCTTTTGGGTCTGGTCTT 58.013 50.000 0.00 0.00 0.00 3.01
164 165 1.610522 CAGCTTTTGGGTCTGGTCTTG 59.389 52.381 0.00 0.00 0.00 3.02
165 166 1.215423 AGCTTTTGGGTCTGGTCTTGT 59.785 47.619 0.00 0.00 0.00 3.16
166 167 1.338020 GCTTTTGGGTCTGGTCTTGTG 59.662 52.381 0.00 0.00 0.00 3.33
167 168 1.956477 CTTTTGGGTCTGGTCTTGTGG 59.044 52.381 0.00 0.00 0.00 4.17
168 169 0.184933 TTTGGGTCTGGTCTTGTGGG 59.815 55.000 0.00 0.00 0.00 4.61
169 170 0.696143 TTGGGTCTGGTCTTGTGGGA 60.696 55.000 0.00 0.00 0.00 4.37
170 171 1.375326 GGGTCTGGTCTTGTGGGAC 59.625 63.158 0.00 0.00 35.66 4.46
171 172 1.128188 GGGTCTGGTCTTGTGGGACT 61.128 60.000 0.00 0.00 36.55 3.85
172 173 1.640917 GGTCTGGTCTTGTGGGACTA 58.359 55.000 0.00 0.00 36.55 2.59
173 174 1.550976 GGTCTGGTCTTGTGGGACTAG 59.449 57.143 0.00 0.00 43.25 2.57
174 175 1.550976 GTCTGGTCTTGTGGGACTAGG 59.449 57.143 7.83 0.00 42.51 3.02
175 176 0.905357 CTGGTCTTGTGGGACTAGGG 59.095 60.000 0.00 0.00 39.89 3.53
176 177 1.198759 TGGTCTTGTGGGACTAGGGC 61.199 60.000 0.00 0.00 36.55 5.19
177 178 1.602771 GTCTTGTGGGACTAGGGCC 59.397 63.158 0.00 0.00 33.81 5.80
178 179 0.910088 GTCTTGTGGGACTAGGGCCT 60.910 60.000 12.58 12.58 33.81 5.19
179 180 0.178873 TCTTGTGGGACTAGGGCCTT 60.179 55.000 13.45 0.00 0.00 4.35
180 181 0.035056 CTTGTGGGACTAGGGCCTTG 60.035 60.000 13.45 13.57 0.00 3.61
181 182 1.497309 TTGTGGGACTAGGGCCTTGG 61.497 60.000 13.45 8.13 0.00 3.61
182 183 3.015145 TGGGACTAGGGCCTTGGC 61.015 66.667 13.45 13.14 0.00 4.52
183 184 2.692741 GGGACTAGGGCCTTGGCT 60.693 66.667 20.37 0.00 0.00 4.75
184 185 1.384082 GGGACTAGGGCCTTGGCTA 60.384 63.158 20.37 0.00 0.00 3.93
185 186 1.697082 GGGACTAGGGCCTTGGCTAC 61.697 65.000 20.37 10.20 0.00 3.58
186 187 1.697082 GGACTAGGGCCTTGGCTACC 61.697 65.000 20.37 12.55 0.00 3.18
187 188 0.691413 GACTAGGGCCTTGGCTACCT 60.691 60.000 13.45 12.31 37.13 3.08
188 189 0.253207 ACTAGGGCCTTGGCTACCTT 60.253 55.000 13.45 0.00 34.59 3.50
189 190 0.181350 CTAGGGCCTTGGCTACCTTG 59.819 60.000 13.45 8.76 34.59 3.61
190 191 0.549169 TAGGGCCTTGGCTACCTTGT 60.549 55.000 13.45 0.00 34.59 3.16
191 192 1.076727 GGGCCTTGGCTACCTTGTT 59.923 57.895 11.71 0.00 0.00 2.83
192 193 1.250840 GGGCCTTGGCTACCTTGTTG 61.251 60.000 11.71 0.00 0.00 3.33
193 194 0.539669 GGCCTTGGCTACCTTGTTGT 60.540 55.000 11.71 0.00 0.00 3.32
194 195 1.328279 GCCTTGGCTACCTTGTTGTT 58.672 50.000 4.11 0.00 0.00 2.83
195 196 1.686587 GCCTTGGCTACCTTGTTGTTT 59.313 47.619 4.11 0.00 0.00 2.83
196 197 2.102420 GCCTTGGCTACCTTGTTGTTTT 59.898 45.455 4.11 0.00 0.00 2.43
197 198 3.431626 GCCTTGGCTACCTTGTTGTTTTT 60.432 43.478 4.11 0.00 0.00 1.94
198 199 4.368315 CCTTGGCTACCTTGTTGTTTTTC 58.632 43.478 0.00 0.00 0.00 2.29
199 200 3.701532 TGGCTACCTTGTTGTTTTTCG 57.298 42.857 0.00 0.00 0.00 3.46
200 201 3.018149 TGGCTACCTTGTTGTTTTTCGT 58.982 40.909 0.00 0.00 0.00 3.85
201 202 3.444388 TGGCTACCTTGTTGTTTTTCGTT 59.556 39.130 0.00 0.00 0.00 3.85
202 203 3.794564 GGCTACCTTGTTGTTTTTCGTTG 59.205 43.478 0.00 0.00 0.00 4.10
203 204 3.242016 GCTACCTTGTTGTTTTTCGTTGC 59.758 43.478 0.00 0.00 0.00 4.17
204 205 3.586100 ACCTTGTTGTTTTTCGTTGCT 57.414 38.095 0.00 0.00 0.00 3.91
205 206 3.507786 ACCTTGTTGTTTTTCGTTGCTC 58.492 40.909 0.00 0.00 0.00 4.26
206 207 3.192633 ACCTTGTTGTTTTTCGTTGCTCT 59.807 39.130 0.00 0.00 0.00 4.09
207 208 4.173256 CCTTGTTGTTTTTCGTTGCTCTT 58.827 39.130 0.00 0.00 0.00 2.85
208 209 4.625311 CCTTGTTGTTTTTCGTTGCTCTTT 59.375 37.500 0.00 0.00 0.00 2.52
209 210 5.444481 CCTTGTTGTTTTTCGTTGCTCTTTG 60.444 40.000 0.00 0.00 0.00 2.77
210 211 3.366422 TGTTGTTTTTCGTTGCTCTTTGC 59.634 39.130 0.00 0.00 43.25 3.68
211 212 3.502191 TGTTTTTCGTTGCTCTTTGCT 57.498 38.095 0.00 0.00 43.37 3.91
212 213 4.624336 TGTTTTTCGTTGCTCTTTGCTA 57.376 36.364 0.00 0.00 43.37 3.49
213 214 5.181690 TGTTTTTCGTTGCTCTTTGCTAT 57.818 34.783 0.00 0.00 43.37 2.97
214 215 5.587289 TGTTTTTCGTTGCTCTTTGCTATT 58.413 33.333 0.00 0.00 43.37 1.73
215 216 6.730175 TGTTTTTCGTTGCTCTTTGCTATTA 58.270 32.000 0.00 0.00 43.37 0.98
216 217 7.367285 TGTTTTTCGTTGCTCTTTGCTATTAT 58.633 30.769 0.00 0.00 43.37 1.28
217 218 7.537306 TGTTTTTCGTTGCTCTTTGCTATTATC 59.463 33.333 0.00 0.00 43.37 1.75
218 219 6.735678 TTTCGTTGCTCTTTGCTATTATCA 57.264 33.333 0.00 0.00 43.37 2.15
219 220 6.735678 TTCGTTGCTCTTTGCTATTATCAA 57.264 33.333 0.00 0.00 43.37 2.57
220 221 6.925610 TCGTTGCTCTTTGCTATTATCAAT 57.074 33.333 0.00 0.00 43.37 2.57
221 222 6.718388 TCGTTGCTCTTTGCTATTATCAATG 58.282 36.000 0.00 0.00 43.37 2.82
222 223 6.538381 TCGTTGCTCTTTGCTATTATCAATGA 59.462 34.615 0.00 0.00 43.37 2.57
223 224 7.065683 TCGTTGCTCTTTGCTATTATCAATGAA 59.934 33.333 0.00 0.00 43.37 2.57
224 225 7.859377 CGTTGCTCTTTGCTATTATCAATGAAT 59.141 33.333 0.00 0.00 43.37 2.57
225 226 9.525409 GTTGCTCTTTGCTATTATCAATGAATT 57.475 29.630 0.00 0.00 43.37 2.17
226 227 9.524106 TTGCTCTTTGCTATTATCAATGAATTG 57.476 29.630 0.00 0.00 43.37 2.32
227 228 8.139350 TGCTCTTTGCTATTATCAATGAATTGG 58.861 33.333 3.31 0.00 43.37 3.16
228 229 7.115947 GCTCTTTGCTATTATCAATGAATTGGC 59.884 37.037 3.31 0.00 37.25 4.52
229 230 8.241497 TCTTTGCTATTATCAATGAATTGGCT 57.759 30.769 3.31 0.00 38.30 4.75
230 231 9.353431 TCTTTGCTATTATCAATGAATTGGCTA 57.647 29.630 3.31 0.00 38.30 3.93
231 232 9.403110 CTTTGCTATTATCAATGAATTGGCTAC 57.597 33.333 3.31 0.00 38.30 3.58
232 233 7.452880 TGCTATTATCAATGAATTGGCTACC 57.547 36.000 3.31 0.00 38.30 3.18
233 234 7.233632 TGCTATTATCAATGAATTGGCTACCT 58.766 34.615 3.31 0.00 38.30 3.08
234 235 7.725397 TGCTATTATCAATGAATTGGCTACCTT 59.275 33.333 3.31 0.00 38.30 3.50
235 236 8.025445 GCTATTATCAATGAATTGGCTACCTTG 58.975 37.037 3.31 0.00 38.30 3.61
236 237 7.902920 ATTATCAATGAATTGGCTACCTTGT 57.097 32.000 3.31 0.00 38.30 3.16
237 238 7.716799 TTATCAATGAATTGGCTACCTTGTT 57.283 32.000 3.31 0.00 38.30 2.83
238 239 5.389859 TCAATGAATTGGCTACCTTGTTG 57.610 39.130 3.31 0.00 38.30 3.33
239 240 4.832266 TCAATGAATTGGCTACCTTGTTGT 59.168 37.500 3.31 0.00 38.30 3.32
240 241 5.304101 TCAATGAATTGGCTACCTTGTTGTT 59.696 36.000 3.31 0.00 38.30 2.83
241 242 5.806654 ATGAATTGGCTACCTTGTTGTTT 57.193 34.783 0.00 0.00 0.00 2.83
242 243 5.606348 TGAATTGGCTACCTTGTTGTTTT 57.394 34.783 0.00 0.00 0.00 2.43
243 244 5.983540 TGAATTGGCTACCTTGTTGTTTTT 58.016 33.333 0.00 0.00 0.00 1.94
244 245 6.045955 TGAATTGGCTACCTTGTTGTTTTTC 58.954 36.000 0.00 0.00 0.00 2.29
245 246 3.701532 TGGCTACCTTGTTGTTTTTCG 57.298 42.857 0.00 0.00 0.00 3.46
246 247 3.018149 TGGCTACCTTGTTGTTTTTCGT 58.982 40.909 0.00 0.00 0.00 3.85
247 248 3.444388 TGGCTACCTTGTTGTTTTTCGTT 59.556 39.130 0.00 0.00 0.00 3.85
248 249 3.794564 GGCTACCTTGTTGTTTTTCGTTG 59.205 43.478 0.00 0.00 0.00 4.10
249 250 3.242016 GCTACCTTGTTGTTTTTCGTTGC 59.758 43.478 0.00 0.00 0.00 4.17
250 251 3.586100 ACCTTGTTGTTTTTCGTTGCT 57.414 38.095 0.00 0.00 0.00 3.91
251 252 3.507786 ACCTTGTTGTTTTTCGTTGCTC 58.492 40.909 0.00 0.00 0.00 4.26
252 253 3.192633 ACCTTGTTGTTTTTCGTTGCTCT 59.807 39.130 0.00 0.00 0.00 4.09
253 254 4.173256 CCTTGTTGTTTTTCGTTGCTCTT 58.827 39.130 0.00 0.00 0.00 2.85
254 255 4.625311 CCTTGTTGTTTTTCGTTGCTCTTT 59.375 37.500 0.00 0.00 0.00 2.52
255 256 5.444481 CCTTGTTGTTTTTCGTTGCTCTTTG 60.444 40.000 0.00 0.00 0.00 2.77
256 257 3.366422 TGTTGTTTTTCGTTGCTCTTTGC 59.634 39.130 0.00 0.00 43.25 3.68
257 258 3.502191 TGTTTTTCGTTGCTCTTTGCT 57.498 38.095 0.00 0.00 43.37 3.91
258 259 4.624336 TGTTTTTCGTTGCTCTTTGCTA 57.376 36.364 0.00 0.00 43.37 3.49
259 260 5.181690 TGTTTTTCGTTGCTCTTTGCTAT 57.818 34.783 0.00 0.00 43.37 2.97
260 261 5.587289 TGTTTTTCGTTGCTCTTTGCTATT 58.413 33.333 0.00 0.00 43.37 1.73
261 262 6.730175 TGTTTTTCGTTGCTCTTTGCTATTA 58.270 32.000 0.00 0.00 43.37 0.98
262 263 7.367285 TGTTTTTCGTTGCTCTTTGCTATTAT 58.633 30.769 0.00 0.00 43.37 1.28
263 264 7.537306 TGTTTTTCGTTGCTCTTTGCTATTATC 59.463 33.333 0.00 0.00 43.37 1.75
264 265 6.735678 TTTCGTTGCTCTTTGCTATTATCA 57.264 33.333 0.00 0.00 43.37 2.15
265 266 6.735678 TTCGTTGCTCTTTGCTATTATCAA 57.264 33.333 0.00 0.00 43.37 2.57
266 267 6.925610 TCGTTGCTCTTTGCTATTATCAAT 57.074 33.333 0.00 0.00 43.37 2.57
267 268 6.718388 TCGTTGCTCTTTGCTATTATCAATG 58.282 36.000 0.00 0.00 43.37 2.82
268 269 6.538381 TCGTTGCTCTTTGCTATTATCAATGA 59.462 34.615 0.00 0.00 43.37 2.57
269 270 7.065683 TCGTTGCTCTTTGCTATTATCAATGAA 59.934 33.333 0.00 0.00 43.37 2.57
270 271 7.859377 CGTTGCTCTTTGCTATTATCAATGAAT 59.141 33.333 0.00 0.00 43.37 2.57
271 272 9.525409 GTTGCTCTTTGCTATTATCAATGAATT 57.475 29.630 0.00 0.00 43.37 2.17
272 273 9.524106 TTGCTCTTTGCTATTATCAATGAATTG 57.476 29.630 0.00 0.00 43.37 2.32
273 274 7.650504 TGCTCTTTGCTATTATCAATGAATTGC 59.349 33.333 0.00 0.00 43.37 3.56
274 275 7.115947 GCTCTTTGCTATTATCAATGAATTGCC 59.884 37.037 0.00 0.00 35.15 4.52
275 276 8.009622 TCTTTGCTATTATCAATGAATTGCCA 57.990 30.769 0.00 0.00 37.68 4.92
276 277 8.139350 TCTTTGCTATTATCAATGAATTGCCAG 58.861 33.333 0.00 0.00 37.68 4.85
277 278 5.775686 TGCTATTATCAATGAATTGCCAGC 58.224 37.500 0.00 3.64 37.68 4.85
278 279 4.855388 GCTATTATCAATGAATTGCCAGCG 59.145 41.667 0.00 0.00 37.68 5.18
279 280 5.335113 GCTATTATCAATGAATTGCCAGCGA 60.335 40.000 0.00 0.00 37.68 4.93
280 281 5.717078 ATTATCAATGAATTGCCAGCGAT 57.283 34.783 0.00 0.00 37.68 4.58
281 282 2.855660 TCAATGAATTGCCAGCGATG 57.144 45.000 0.00 0.00 37.68 3.84
282 283 2.093890 TCAATGAATTGCCAGCGATGT 58.906 42.857 0.00 0.00 37.68 3.06
283 284 2.492881 TCAATGAATTGCCAGCGATGTT 59.507 40.909 0.00 0.00 37.68 2.71
284 285 2.572191 ATGAATTGCCAGCGATGTTG 57.428 45.000 0.00 0.00 0.00 3.33
285 286 0.527113 TGAATTGCCAGCGATGTTGG 59.473 50.000 0.00 0.00 36.98 3.77
286 287 0.810648 GAATTGCCAGCGATGTTGGA 59.189 50.000 0.00 0.00 35.94 3.53
287 288 1.406539 GAATTGCCAGCGATGTTGGAT 59.593 47.619 0.00 0.00 35.94 3.41
288 289 1.027357 ATTGCCAGCGATGTTGGATC 58.973 50.000 0.00 0.00 35.94 3.36
289 290 0.035152 TTGCCAGCGATGTTGGATCT 60.035 50.000 0.00 0.00 35.94 2.75
290 291 0.035152 TGCCAGCGATGTTGGATCTT 60.035 50.000 0.00 0.00 35.94 2.40
291 292 1.098050 GCCAGCGATGTTGGATCTTT 58.902 50.000 0.00 0.00 35.94 2.52
292 293 2.288666 GCCAGCGATGTTGGATCTTTA 58.711 47.619 0.00 0.00 35.94 1.85
293 294 2.682856 GCCAGCGATGTTGGATCTTTAA 59.317 45.455 0.00 0.00 35.94 1.52
294 295 3.128589 GCCAGCGATGTTGGATCTTTAAA 59.871 43.478 0.00 0.00 35.94 1.52
295 296 4.380444 GCCAGCGATGTTGGATCTTTAAAA 60.380 41.667 0.00 0.00 35.94 1.52
296 297 5.708948 CCAGCGATGTTGGATCTTTAAAAA 58.291 37.500 0.00 0.00 35.94 1.94
317 318 5.783100 AAAATAAAATCAACGGCAGCATG 57.217 34.783 0.00 0.00 40.87 4.06
318 319 4.454728 AATAAAATCAACGGCAGCATGT 57.545 36.364 0.00 0.00 39.31 3.21
319 320 2.352503 AAAATCAACGGCAGCATGTC 57.647 45.000 0.00 0.00 39.31 3.06
320 321 1.246649 AAATCAACGGCAGCATGTCA 58.753 45.000 0.00 0.00 44.43 3.58
321 322 1.246649 AATCAACGGCAGCATGTCAA 58.753 45.000 0.00 0.00 44.43 3.18
326 327 2.693762 CGGCAGCATGTCAACCTGG 61.694 63.158 0.00 0.00 44.43 4.45
335 336 3.682718 GCATGTCAACCTGGCTAGTGTAT 60.683 47.826 0.00 0.00 0.00 2.29
347 348 1.135139 CTAGTGTATGCAGCACCGACT 59.865 52.381 17.27 2.01 37.56 4.18
374 383 4.486503 GCAGCTGAGAGCCCCAGG 62.487 72.222 20.43 0.00 43.77 4.45
398 407 1.217244 CCTCCGAGGTAAACCGTGG 59.783 63.158 6.24 6.41 42.08 4.94
399 408 1.538687 CCTCCGAGGTAAACCGTGGT 61.539 60.000 6.24 0.00 42.08 4.16
400 409 0.319405 CTCCGAGGTAAACCGTGGTT 59.681 55.000 0.00 0.00 42.08 3.67
402 411 0.952010 CCGAGGTAAACCGTGGTTGG 60.952 60.000 4.79 0.00 42.08 3.77
403 412 1.571215 CGAGGTAAACCGTGGTTGGC 61.571 60.000 4.79 1.45 42.08 4.52
404 413 1.228337 AGGTAAACCGTGGTTGGCC 60.228 57.895 4.79 10.38 42.08 5.36
405 414 2.619165 GGTAAACCGTGGTTGGCCG 61.619 63.158 4.79 0.00 38.47 6.13
406 415 2.979120 TAAACCGTGGTTGGCCGC 60.979 61.111 4.79 0.00 41.71 6.53
428 437 2.203139 TGGACACACAACGCAGGG 60.203 61.111 0.00 0.00 0.00 4.45
507 516 1.601759 CGCCATCCCATGATCCCAC 60.602 63.158 0.00 0.00 0.00 4.61
543 552 3.803082 ACATGCCGCGTCACATGC 61.803 61.111 24.98 13.39 46.08 4.06
624 666 1.990160 TTAATCATTCCGGCCGGCCT 61.990 55.000 41.01 25.31 34.68 5.19
650 692 1.363246 GTCACCCCTTCCTTCCTTCT 58.637 55.000 0.00 0.00 0.00 2.85
653 695 0.498685 ACCCCTTCCTTCCTTCTCCT 59.501 55.000 0.00 0.00 0.00 3.69
655 697 1.208706 CCCTTCCTTCCTTCTCCTCC 58.791 60.000 0.00 0.00 0.00 4.30
656 698 0.827368 CCTTCCTTCCTTCTCCTCCG 59.173 60.000 0.00 0.00 0.00 4.63
657 699 1.562783 CTTCCTTCCTTCTCCTCCGT 58.437 55.000 0.00 0.00 0.00 4.69
660 702 0.820871 CCTTCCTTCTCCTCCGTGAG 59.179 60.000 0.00 0.00 0.00 3.51
662 704 1.595993 TTCCTTCTCCTCCGTGAGCG 61.596 60.000 0.00 0.00 37.95 5.03
663 705 2.046864 CCTTCTCCTCCGTGAGCGA 61.047 63.158 0.00 0.00 41.33 4.93
664 706 1.431440 CTTCTCCTCCGTGAGCGAG 59.569 63.158 0.00 10.39 41.33 5.03
665 707 1.002502 TTCTCCTCCGTGAGCGAGA 60.003 57.895 13.11 13.11 41.33 4.04
666 708 0.608308 TTCTCCTCCGTGAGCGAGAA 60.608 55.000 19.01 19.01 40.29 2.87
675 717 2.255881 TGAGCGAGAACGTCCGTCA 61.256 57.895 0.00 0.00 41.98 4.35
677 719 2.050714 GCGAGAACGTCCGTCACA 60.051 61.111 0.00 0.00 41.98 3.58
713 755 3.993376 GACCCACGCGGCGTTATCA 62.993 63.158 27.24 0.00 38.32 2.15
840 891 1.165270 GCGCCGGCAATTATTAGGAT 58.835 50.000 28.98 0.00 39.62 3.24
856 907 2.361104 ATGGACGCGCCCACAAAT 60.361 55.556 18.97 0.00 39.34 2.32
951 1016 1.262683 GAACAGTGAGCAAGAGTGTGC 59.737 52.381 0.00 0.00 45.28 4.57
952 1017 0.533755 ACAGTGAGCAAGAGTGTGCC 60.534 55.000 0.00 0.00 46.14 5.01
953 1018 0.533531 CAGTGAGCAAGAGTGTGCCA 60.534 55.000 0.00 0.00 46.14 4.92
957 1022 4.030452 GCAAGAGTGTGCCACCGC 62.030 66.667 0.00 0.00 38.66 5.68
959 1024 4.235762 AAGAGTGTGCCACCGCGT 62.236 61.111 4.92 0.00 38.08 6.01
960 1025 4.664677 AGAGTGTGCCACCGCGTC 62.665 66.667 4.92 0.00 38.08 5.19
1261 1344 2.619646 GGTGAGATTACCTCGTCTCTCC 59.380 54.545 7.47 7.47 44.92 3.71
1263 1346 2.241430 TGAGATTACCTCGTCTCTCCCA 59.759 50.000 4.29 0.00 44.92 4.37
1264 1347 2.882137 GAGATTACCTCGTCTCTCCCAG 59.118 54.545 0.00 0.00 38.24 4.45
1276 1359 0.900421 TCTCCCAGTCTCGTCTCGTA 59.100 55.000 0.00 0.00 0.00 3.43
1302 1385 3.730761 GCTTGGCACCAGCGAGTG 61.731 66.667 4.93 4.93 43.41 3.51
1327 1410 2.113986 GCCAGTGGCCAGTGAGTT 59.886 61.111 37.24 3.10 44.06 3.01
1332 1415 0.106519 AGTGGCCAGTGAGTTGCTTT 60.107 50.000 13.75 0.00 0.00 3.51
1333 1416 0.746659 GTGGCCAGTGAGTTGCTTTT 59.253 50.000 5.11 0.00 0.00 2.27
1334 1417 1.136891 GTGGCCAGTGAGTTGCTTTTT 59.863 47.619 5.11 0.00 0.00 1.94
1354 1437 0.770557 TTTAGGGGTGGCCAGTGAGT 60.771 55.000 5.11 0.00 0.00 3.41
1359 1442 1.529244 GGTGGCCAGTGAGTTGCTT 60.529 57.895 5.11 0.00 0.00 3.91
1369 1452 3.923461 CAGTGAGTTGCTTAGCACTACTC 59.077 47.826 24.26 24.26 42.97 2.59
1372 1455 1.893801 AGTTGCTTAGCACTACTCCGT 59.106 47.619 6.34 0.00 38.71 4.69
1373 1456 3.087031 AGTTGCTTAGCACTACTCCGTA 58.913 45.455 6.34 0.00 38.71 4.02
1377 1460 3.128242 TGCTTAGCACTACTCCGTAGTTC 59.872 47.826 1.39 0.36 45.68 3.01
1380 1463 1.089920 GCACTACTCCGTAGTTCCGA 58.910 55.000 4.05 0.00 45.68 4.55
1381 1464 1.674962 GCACTACTCCGTAGTTCCGAT 59.325 52.381 4.05 0.00 45.68 4.18
1384 1467 3.873361 CACTACTCCGTAGTTCCGATGTA 59.127 47.826 4.05 0.00 45.68 2.29
1385 1468 4.514441 CACTACTCCGTAGTTCCGATGTAT 59.486 45.833 4.05 0.00 45.68 2.29
1386 1469 5.008415 CACTACTCCGTAGTTCCGATGTATT 59.992 44.000 4.05 0.00 45.68 1.89
1387 1470 4.996788 ACTCCGTAGTTCCGATGTATTT 57.003 40.909 0.00 0.00 29.00 1.40
1388 1471 5.334724 ACTCCGTAGTTCCGATGTATTTT 57.665 39.130 0.00 0.00 29.00 1.82
1390 1473 4.685924 TCCGTAGTTCCGATGTATTTTCC 58.314 43.478 0.00 0.00 0.00 3.13
1391 1474 3.488310 CCGTAGTTCCGATGTATTTTCCG 59.512 47.826 0.00 0.00 0.00 4.30
1392 1475 4.353737 CGTAGTTCCGATGTATTTTCCGA 58.646 43.478 0.00 0.00 0.00 4.55
1393 1476 4.205792 CGTAGTTCCGATGTATTTTCCGAC 59.794 45.833 0.00 0.00 0.00 4.79
1394 1477 4.196626 AGTTCCGATGTATTTTCCGACA 57.803 40.909 0.00 0.00 0.00 4.35
1395 1478 4.571919 AGTTCCGATGTATTTTCCGACAA 58.428 39.130 0.00 0.00 0.00 3.18
1396 1479 4.630069 AGTTCCGATGTATTTTCCGACAAG 59.370 41.667 0.00 0.00 0.00 3.16
1417 1500 3.008266 AGGATTTGAACATTTGCCAAGGG 59.992 43.478 0.00 0.00 0.00 3.95
1423 1506 4.698575 TGAACATTTGCCAAGGGTAAAAC 58.301 39.130 2.70 0.00 40.35 2.43
1424 1507 3.762407 ACATTTGCCAAGGGTAAAACC 57.238 42.857 2.70 0.00 40.35 3.27
1428 1726 2.463047 TGCCAAGGGTAAAACCAGTT 57.537 45.000 0.00 0.00 41.02 3.16
1429 1727 3.596940 TGCCAAGGGTAAAACCAGTTA 57.403 42.857 0.00 0.00 41.02 2.24
1435 1733 5.126545 CCAAGGGTAAAACCAGTTAATAGGC 59.873 44.000 0.00 0.00 41.02 3.93
1483 3121 4.216902 TGAACTGAGATCCAAAGTGCATTG 59.783 41.667 0.00 0.00 0.00 2.82
1490 3128 5.075493 AGATCCAAAGTGCATTGTTCTTCT 58.925 37.500 0.00 0.00 0.00 2.85
1496 3134 2.808543 AGTGCATTGTTCTTCTTCGACC 59.191 45.455 0.00 0.00 0.00 4.79
1524 3679 5.534278 TCCATGCACACTGACATTTTTCTTA 59.466 36.000 0.00 0.00 0.00 2.10
2093 4549 9.435688 GGCCTTATGATTTGTTCTTTTATGTTT 57.564 29.630 0.00 0.00 0.00 2.83
2141 4597 4.073293 AGGATTGAATTTCGACGCCTAT 57.927 40.909 7.72 0.00 0.00 2.57
2185 4642 2.074729 ATCTTCCCAGGTACTCCGAG 57.925 55.000 0.00 0.00 34.60 4.63
2301 4770 4.513692 CAGATGGTGACGGAAAAGTTAACA 59.486 41.667 8.61 0.00 31.88 2.41
2400 4869 1.982913 CCATTTTTGCGCGGAACTAAC 59.017 47.619 14.24 0.00 0.00 2.34
2406 4875 0.739462 TGCGCGGAACTAACCATCTG 60.739 55.000 8.83 0.00 0.00 2.90
2407 4876 2.006772 CGCGGAACTAACCATCTGC 58.993 57.895 0.00 0.00 43.08 4.26
2423 4892 2.297701 TCTGCTTCAACCTGTGAAACC 58.702 47.619 0.00 0.00 45.67 3.27
2527 5013 3.640967 ACTATGATCTCCCTCTTGCACTC 59.359 47.826 0.00 0.00 0.00 3.51
2625 5129 6.365520 ACATTTACCTTCTCACTTTGGAGTT 58.634 36.000 0.00 0.00 36.30 3.01
2626 5130 7.514721 ACATTTACCTTCTCACTTTGGAGTTA 58.485 34.615 0.00 0.00 36.30 2.24
2627 5131 7.444487 ACATTTACCTTCTCACTTTGGAGTTAC 59.556 37.037 0.00 0.00 36.30 2.50
2628 5132 6.742559 TTACCTTCTCACTTTGGAGTTACT 57.257 37.500 0.00 0.00 36.30 2.24
2629 5133 4.962155 ACCTTCTCACTTTGGAGTTACTG 58.038 43.478 0.00 0.00 36.30 2.74
2630 5134 4.409247 ACCTTCTCACTTTGGAGTTACTGT 59.591 41.667 0.00 0.00 36.30 3.55
2631 5135 5.601313 ACCTTCTCACTTTGGAGTTACTGTA 59.399 40.000 0.00 0.00 36.30 2.74
2632 5136 6.270231 ACCTTCTCACTTTGGAGTTACTGTAT 59.730 38.462 0.00 0.00 36.30 2.29
2739 5249 7.165485 TGTGTACAGTAATTGCCTAAAGTGAT 58.835 34.615 0.00 0.00 0.00 3.06
2763 5748 4.018649 TGCGTATTGAGCATGAACATTG 57.981 40.909 0.00 0.00 40.01 2.82
2789 5774 6.257411 TGCATGTGGAAGTTTTTGTATGTTTG 59.743 34.615 0.00 0.00 0.00 2.93
2807 5793 3.735237 TTGCCCGAAAGTAAAATGCAA 57.265 38.095 0.00 0.00 35.13 4.08
2815 5801 6.183359 CCCGAAAGTAAAATGCAAAACATACG 60.183 38.462 0.00 0.00 38.34 3.06
2824 5810 4.598406 TGCAAAACATACGAGCACTATG 57.402 40.909 0.00 0.00 0.00 2.23
2984 6033 5.216622 TGTAGGGGACTATTTGCAGACTAT 58.783 41.667 0.00 0.00 46.56 2.12
3098 9051 1.410365 GGGTCGAATCCTCCTCAGAGA 60.410 57.143 0.00 0.00 43.39 3.10
3170 9123 5.334414 CGTTGCTCACAATTTTCTCTTAGCT 60.334 40.000 0.00 0.00 38.27 3.32
3329 9439 5.603170 TTCCCTAACCCGTAAGTGATAAG 57.397 43.478 0.00 0.00 0.00 1.73
3474 10909 6.875972 ATAGTTCTGGACTTCAACTGGTAT 57.124 37.500 0.00 0.00 39.86 2.73
3513 10948 1.584380 CTGAAGACCAAGCAGCAGCC 61.584 60.000 0.00 0.00 43.56 4.85
3582 11031 4.940046 TCCTCTGACAAAGCATTTCAGATC 59.060 41.667 13.24 0.00 37.99 2.75
3605 11149 6.996106 TCGATAAACAAAATATGACACCGAC 58.004 36.000 0.00 0.00 0.00 4.79
3627 11171 2.480073 GCTTATGCCATCAACGTTGCAT 60.480 45.455 23.47 22.86 45.67 3.96
3779 11392 0.743345 GGATCAACCAGTACACGGCC 60.743 60.000 0.00 0.00 38.79 6.13
3800 11413 0.750911 GCCTCATGAAGGGGCAGAAG 60.751 60.000 17.28 0.00 46.32 2.85
3870 11483 1.967319 TGCCTGTGAGTTTCTTGTCC 58.033 50.000 0.00 0.00 0.00 4.02
3893 11510 5.529060 CCCAAGCTCTAGGTTTTACATCATC 59.471 44.000 0.00 0.00 32.86 2.92
3984 11605 1.616159 AACCGATTGGACCAAAGGTG 58.384 50.000 28.04 13.97 38.04 4.00
3988 11609 1.266718 CGATTGGACCAAAGGTGTGTG 59.733 52.381 11.82 0.00 35.25 3.82
4049 11692 2.095466 CGGACATTATTTGCACCGTTGT 60.095 45.455 0.00 0.00 40.96 3.32
4060 11703 4.371855 TGCACCGTTGTGTTCAAAATTA 57.628 36.364 0.00 0.00 44.65 1.40
4087 11742 5.624159 TGATCAATCCTTGTGAACTCTTGT 58.376 37.500 0.00 0.00 0.00 3.16
4260 11918 1.363744 CTCGGTTTCATGCCTCTCAC 58.636 55.000 0.00 0.00 0.00 3.51
4387 13297 1.684248 GGTTCTACCGGAGCTACCTCA 60.684 57.143 9.46 0.00 39.96 3.86
4530 13440 2.535317 AACAGCCCCACCCTGGAT 60.535 61.111 0.00 0.00 40.96 3.41
4608 13518 3.350219 TGGAGTGCTTCTGAATTACCC 57.650 47.619 0.00 0.00 0.00 3.69
4609 13519 2.642311 TGGAGTGCTTCTGAATTACCCA 59.358 45.455 0.00 1.53 0.00 4.51
4610 13520 3.073798 TGGAGTGCTTCTGAATTACCCAA 59.926 43.478 0.00 0.00 0.00 4.12
4611 13521 3.440522 GGAGTGCTTCTGAATTACCCAAC 59.559 47.826 0.00 0.00 0.00 3.77
4612 13522 3.421844 AGTGCTTCTGAATTACCCAACC 58.578 45.455 0.00 0.00 0.00 3.77
4613 13523 3.153919 GTGCTTCTGAATTACCCAACCA 58.846 45.455 0.00 0.00 0.00 3.67
4614 13524 3.763897 GTGCTTCTGAATTACCCAACCAT 59.236 43.478 0.00 0.00 0.00 3.55
4644 13554 5.997129 TGTTGTCATCATCTTGCTGAGTTTA 59.003 36.000 0.00 0.00 0.00 2.01
4656 13566 4.002982 TGCTGAGTTTATGCCTACTGTTG 58.997 43.478 0.00 0.00 0.00 3.33
4661 13571 4.890088 AGTTTATGCCTACTGTTGTTCGA 58.110 39.130 0.00 0.00 0.00 3.71
4664 13574 5.794687 TTATGCCTACTGTTGTTCGAATG 57.205 39.130 0.00 0.00 0.00 2.67
4666 13576 2.037902 TGCCTACTGTTGTTCGAATGGA 59.962 45.455 0.00 0.00 0.00 3.41
4711 13621 6.538742 TCGAATGGAACCATAATTCAGACTTC 59.461 38.462 6.77 0.00 35.31 3.01
4720 13630 5.277876 CCATAATTCAGACTTCAGAGCATGC 60.278 44.000 10.51 10.51 0.00 4.06
4787 13698 4.141981 TGTTGCATTTCATGTGTTCTTGGT 60.142 37.500 0.00 0.00 0.00 3.67
4789 13700 3.635836 TGCATTTCATGTGTTCTTGGTCA 59.364 39.130 0.00 0.00 0.00 4.02
4838 13749 1.265236 CCCCAAAATTAGGCAGTGCA 58.735 50.000 18.61 0.00 0.00 4.57
4841 13752 1.547372 CCAAAATTAGGCAGTGCAGCT 59.453 47.619 18.61 8.32 34.17 4.24
4843 13754 2.490903 CAAAATTAGGCAGTGCAGCTCT 59.509 45.455 18.61 7.16 34.17 4.09
4888 13800 1.153745 ATTCGTCTCTGTCCGCTGC 60.154 57.895 0.00 0.00 0.00 5.25
5029 13942 1.486211 CCATCTCCACGGTCCTAAGT 58.514 55.000 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.125711 ATCGTATACCACCAGGCCCC 61.126 60.000 0.00 0.00 39.06 5.80
1 2 0.034896 CATCGTATACCACCAGGCCC 59.965 60.000 0.00 0.00 39.06 5.80
2 3 1.045407 TCATCGTATACCACCAGGCC 58.955 55.000 0.00 0.00 39.06 5.19
3 4 1.411246 TGTCATCGTATACCACCAGGC 59.589 52.381 0.00 0.00 39.06 4.85
4 5 2.543031 CGTGTCATCGTATACCACCAGG 60.543 54.545 0.00 0.00 42.21 4.45
5 6 2.098607 ACGTGTCATCGTATACCACCAG 59.901 50.000 0.00 0.00 42.35 4.00
6 7 2.093890 ACGTGTCATCGTATACCACCA 58.906 47.619 0.00 0.00 42.35 4.17
7 8 2.097954 TCACGTGTCATCGTATACCACC 59.902 50.000 16.51 0.00 42.27 4.61
8 9 3.103738 GTCACGTGTCATCGTATACCAC 58.896 50.000 16.51 0.00 42.27 4.16
9 10 2.748532 TGTCACGTGTCATCGTATACCA 59.251 45.455 16.51 0.00 42.27 3.25
10 11 3.360533 CTGTCACGTGTCATCGTATACC 58.639 50.000 16.51 0.00 42.27 2.73
11 12 3.181503 ACCTGTCACGTGTCATCGTATAC 60.182 47.826 16.51 3.29 42.27 1.47
12 13 3.011818 ACCTGTCACGTGTCATCGTATA 58.988 45.455 16.51 0.00 42.27 1.47
13 14 1.816835 ACCTGTCACGTGTCATCGTAT 59.183 47.619 16.51 0.00 42.27 3.06
14 15 1.068816 CACCTGTCACGTGTCATCGTA 60.069 52.381 16.51 0.00 42.27 3.43
15 16 0.318699 CACCTGTCACGTGTCATCGT 60.319 55.000 16.51 11.94 45.10 3.73
16 17 1.008875 CCACCTGTCACGTGTCATCG 61.009 60.000 16.51 11.32 0.00 3.84
17 18 0.033504 ACCACCTGTCACGTGTCATC 59.966 55.000 16.51 5.73 0.00 2.92
18 19 0.468226 AACCACCTGTCACGTGTCAT 59.532 50.000 16.51 0.00 0.00 3.06
19 20 0.179094 GAACCACCTGTCACGTGTCA 60.179 55.000 16.51 15.47 0.00 3.58
20 21 1.213094 CGAACCACCTGTCACGTGTC 61.213 60.000 16.51 10.98 0.00 3.67
21 22 1.227147 CGAACCACCTGTCACGTGT 60.227 57.895 16.51 0.00 0.00 4.49
22 23 0.808453 AACGAACCACCTGTCACGTG 60.808 55.000 9.94 9.94 38.93 4.49
23 24 0.529119 GAACGAACCACCTGTCACGT 60.529 55.000 0.00 0.00 40.02 4.49
24 25 0.528901 TGAACGAACCACCTGTCACG 60.529 55.000 0.00 0.00 34.43 4.35
25 26 1.217882 CTGAACGAACCACCTGTCAC 58.782 55.000 0.00 0.00 0.00 3.67
26 27 0.828022 ACTGAACGAACCACCTGTCA 59.172 50.000 0.00 0.00 0.00 3.58
27 28 1.202486 TCACTGAACGAACCACCTGTC 60.202 52.381 0.00 0.00 0.00 3.51
28 29 0.828022 TCACTGAACGAACCACCTGT 59.172 50.000 0.00 0.00 0.00 4.00
29 30 2.169832 ATCACTGAACGAACCACCTG 57.830 50.000 0.00 0.00 0.00 4.00
30 31 2.368875 AGAATCACTGAACGAACCACCT 59.631 45.455 0.00 0.00 0.00 4.00
31 32 2.737252 GAGAATCACTGAACGAACCACC 59.263 50.000 0.00 0.00 33.17 4.61
32 33 2.737252 GGAGAATCACTGAACGAACCAC 59.263 50.000 0.00 0.00 36.25 4.16
33 34 2.609491 CGGAGAATCACTGAACGAACCA 60.609 50.000 0.00 0.00 36.25 3.67
34 35 1.993370 CGGAGAATCACTGAACGAACC 59.007 52.381 0.00 0.00 36.25 3.62
35 36 2.408704 CACGGAGAATCACTGAACGAAC 59.591 50.000 0.00 0.00 36.25 3.95
36 37 2.295070 TCACGGAGAATCACTGAACGAA 59.705 45.455 0.00 0.00 36.25 3.85
37 38 1.883926 TCACGGAGAATCACTGAACGA 59.116 47.619 0.00 0.00 36.25 3.85
38 39 1.986378 GTCACGGAGAATCACTGAACG 59.014 52.381 0.00 0.00 36.25 3.95
39 40 1.986378 CGTCACGGAGAATCACTGAAC 59.014 52.381 0.00 0.00 36.25 3.18
40 41 1.668919 GCGTCACGGAGAATCACTGAA 60.669 52.381 0.00 0.00 36.25 3.02
41 42 0.109272 GCGTCACGGAGAATCACTGA 60.109 55.000 0.00 0.00 36.25 3.41
42 43 1.078759 GGCGTCACGGAGAATCACTG 61.079 60.000 0.00 0.00 36.25 3.66
43 44 1.215647 GGCGTCACGGAGAATCACT 59.784 57.895 0.00 0.00 36.25 3.41
44 45 0.669318 TTGGCGTCACGGAGAATCAC 60.669 55.000 0.00 0.00 36.25 3.06
45 46 0.669318 GTTGGCGTCACGGAGAATCA 60.669 55.000 0.00 0.00 36.25 2.57
46 47 1.359459 GGTTGGCGTCACGGAGAATC 61.359 60.000 0.00 0.00 0.00 2.52
47 48 1.375523 GGTTGGCGTCACGGAGAAT 60.376 57.895 0.00 0.00 0.00 2.40
48 49 2.029964 GGTTGGCGTCACGGAGAA 59.970 61.111 0.00 0.00 0.00 2.87
49 50 2.504274 AAGGTTGGCGTCACGGAGA 61.504 57.895 0.00 0.00 0.00 3.71
50 51 2.030562 AAGGTTGGCGTCACGGAG 59.969 61.111 0.00 0.00 0.00 4.63
51 52 2.280524 CAAGGTTGGCGTCACGGA 60.281 61.111 0.00 0.00 0.00 4.69
52 53 4.025401 GCAAGGTTGGCGTCACGG 62.025 66.667 0.00 0.00 0.00 4.94
53 54 4.025401 GGCAAGGTTGGCGTCACG 62.025 66.667 0.00 0.00 43.97 4.35
60 61 3.486383 TGAAGAAACTAGGCAAGGTTGG 58.514 45.455 0.00 0.00 34.34 3.77
61 62 7.396540 AATATGAAGAAACTAGGCAAGGTTG 57.603 36.000 0.00 0.00 34.34 3.77
62 63 7.669722 TGAAATATGAAGAAACTAGGCAAGGTT 59.330 33.333 0.00 0.00 38.04 3.50
63 64 7.175104 TGAAATATGAAGAAACTAGGCAAGGT 58.825 34.615 0.00 0.00 0.00 3.50
64 65 7.630242 TGAAATATGAAGAAACTAGGCAAGG 57.370 36.000 0.00 0.00 0.00 3.61
65 66 8.066595 CGATGAAATATGAAGAAACTAGGCAAG 58.933 37.037 0.00 0.00 0.00 4.01
66 67 7.552687 ACGATGAAATATGAAGAAACTAGGCAA 59.447 33.333 0.00 0.00 0.00 4.52
67 68 7.047891 ACGATGAAATATGAAGAAACTAGGCA 58.952 34.615 0.00 0.00 0.00 4.75
68 69 7.484035 ACGATGAAATATGAAGAAACTAGGC 57.516 36.000 0.00 0.00 0.00 3.93
69 70 7.096023 CCGACGATGAAATATGAAGAAACTAGG 60.096 40.741 0.00 0.00 0.00 3.02
70 71 7.648112 TCCGACGATGAAATATGAAGAAACTAG 59.352 37.037 0.00 0.00 0.00 2.57
71 72 7.485810 TCCGACGATGAAATATGAAGAAACTA 58.514 34.615 0.00 0.00 0.00 2.24
72 73 6.338146 TCCGACGATGAAATATGAAGAAACT 58.662 36.000 0.00 0.00 0.00 2.66
73 74 6.255887 ACTCCGACGATGAAATATGAAGAAAC 59.744 38.462 0.00 0.00 0.00 2.78
74 75 6.338146 ACTCCGACGATGAAATATGAAGAAA 58.662 36.000 0.00 0.00 0.00 2.52
75 76 5.902681 ACTCCGACGATGAAATATGAAGAA 58.097 37.500 0.00 0.00 0.00 2.52
76 77 5.515797 ACTCCGACGATGAAATATGAAGA 57.484 39.130 0.00 0.00 0.00 2.87
77 78 4.380087 CGACTCCGACGATGAAATATGAAG 59.620 45.833 0.00 0.00 38.22 3.02
78 79 4.287720 CGACTCCGACGATGAAATATGAA 58.712 43.478 0.00 0.00 38.22 2.57
79 80 3.304458 CCGACTCCGACGATGAAATATGA 60.304 47.826 0.00 0.00 38.22 2.15
80 81 2.980476 CCGACTCCGACGATGAAATATG 59.020 50.000 0.00 0.00 38.22 1.78
81 82 2.882761 TCCGACTCCGACGATGAAATAT 59.117 45.455 0.00 0.00 38.22 1.28
82 83 2.289820 CTCCGACTCCGACGATGAAATA 59.710 50.000 0.00 0.00 38.22 1.40
83 84 1.065701 CTCCGACTCCGACGATGAAAT 59.934 52.381 0.00 0.00 38.22 2.17
84 85 0.450583 CTCCGACTCCGACGATGAAA 59.549 55.000 0.00 0.00 38.22 2.69
85 86 1.989966 GCTCCGACTCCGACGATGAA 61.990 60.000 0.00 0.00 38.22 2.57
86 87 2.470362 GCTCCGACTCCGACGATGA 61.470 63.158 0.00 0.00 38.22 2.92
87 88 2.024871 GCTCCGACTCCGACGATG 59.975 66.667 0.00 0.00 38.22 3.84
88 89 2.124653 AGCTCCGACTCCGACGAT 60.125 61.111 0.00 0.00 38.22 3.73
89 90 3.125573 CAGCTCCGACTCCGACGA 61.126 66.667 0.00 0.00 38.22 4.20
90 91 4.838486 GCAGCTCCGACTCCGACG 62.838 72.222 0.00 0.00 38.22 5.12
91 92 4.838486 CGCAGCTCCGACTCCGAC 62.838 72.222 0.00 0.00 38.22 4.79
93 94 3.916392 AAACGCAGCTCCGACTCCG 62.916 63.158 2.80 0.00 0.00 4.63
94 95 2.048127 AAACGCAGCTCCGACTCC 60.048 61.111 2.80 0.00 0.00 3.85
95 96 1.618640 GACAAACGCAGCTCCGACTC 61.619 60.000 2.80 0.00 0.00 3.36
96 97 1.664965 GACAAACGCAGCTCCGACT 60.665 57.895 2.80 0.00 0.00 4.18
97 98 1.618640 GAGACAAACGCAGCTCCGAC 61.619 60.000 2.80 0.00 0.00 4.79
98 99 1.372997 GAGACAAACGCAGCTCCGA 60.373 57.895 2.80 0.00 0.00 4.55
99 100 2.720758 CGAGACAAACGCAGCTCCG 61.721 63.158 0.00 0.00 0.00 4.63
100 101 1.664965 ACGAGACAAACGCAGCTCC 60.665 57.895 0.00 0.00 0.00 4.70
101 102 1.215655 ACACGAGACAAACGCAGCTC 61.216 55.000 0.00 0.00 0.00 4.09
102 103 1.227263 ACACGAGACAAACGCAGCT 60.227 52.632 0.00 0.00 0.00 4.24
103 104 1.083401 CACACGAGACAAACGCAGC 60.083 57.895 0.00 0.00 0.00 5.25
104 105 0.874175 TCCACACGAGACAAACGCAG 60.874 55.000 0.00 0.00 0.00 5.18
105 106 0.249699 ATCCACACGAGACAAACGCA 60.250 50.000 0.00 0.00 0.00 5.24
106 107 0.438830 GATCCACACGAGACAAACGC 59.561 55.000 0.00 0.00 0.00 4.84
107 108 0.708370 CGATCCACACGAGACAAACG 59.292 55.000 0.00 0.00 0.00 3.60
108 109 1.779569 ACGATCCACACGAGACAAAC 58.220 50.000 0.00 0.00 34.70 2.93
109 110 3.507786 CATACGATCCACACGAGACAAA 58.492 45.455 0.00 0.00 34.70 2.83
110 111 2.159296 CCATACGATCCACACGAGACAA 60.159 50.000 0.00 0.00 34.70 3.18
111 112 1.404035 CCATACGATCCACACGAGACA 59.596 52.381 0.00 0.00 34.70 3.41
112 113 1.674441 TCCATACGATCCACACGAGAC 59.326 52.381 0.00 0.00 34.70 3.36
113 114 1.947456 CTCCATACGATCCACACGAGA 59.053 52.381 0.00 0.00 34.70 4.04
114 115 1.676529 ACTCCATACGATCCACACGAG 59.323 52.381 0.00 0.00 34.70 4.18
115 116 1.404035 CACTCCATACGATCCACACGA 59.596 52.381 0.00 0.00 34.70 4.35
116 117 1.134367 ACACTCCATACGATCCACACG 59.866 52.381 0.00 0.00 0.00 4.49
117 118 2.930040 CAACACTCCATACGATCCACAC 59.070 50.000 0.00 0.00 0.00 3.82
118 119 2.565391 ACAACACTCCATACGATCCACA 59.435 45.455 0.00 0.00 0.00 4.17
119 120 2.930040 CACAACACTCCATACGATCCAC 59.070 50.000 0.00 0.00 0.00 4.02
120 121 2.676750 GCACAACACTCCATACGATCCA 60.677 50.000 0.00 0.00 0.00 3.41
121 122 1.933853 GCACAACACTCCATACGATCC 59.066 52.381 0.00 0.00 0.00 3.36
122 123 2.604914 CAGCACAACACTCCATACGATC 59.395 50.000 0.00 0.00 0.00 3.69
123 124 2.621338 CAGCACAACACTCCATACGAT 58.379 47.619 0.00 0.00 0.00 3.73
124 125 1.939381 GCAGCACAACACTCCATACGA 60.939 52.381 0.00 0.00 0.00 3.43
125 126 0.443869 GCAGCACAACACTCCATACG 59.556 55.000 0.00 0.00 0.00 3.06
126 127 1.466167 CTGCAGCACAACACTCCATAC 59.534 52.381 0.00 0.00 0.00 2.39
127 128 1.812235 CTGCAGCACAACACTCCATA 58.188 50.000 0.00 0.00 0.00 2.74
128 129 1.521450 GCTGCAGCACAACACTCCAT 61.521 55.000 33.36 0.00 41.59 3.41
129 130 2.188829 GCTGCAGCACAACACTCCA 61.189 57.895 33.36 0.00 41.59 3.86
130 131 1.450531 AAGCTGCAGCACAACACTCC 61.451 55.000 38.24 7.01 45.16 3.85
131 132 0.383231 AAAGCTGCAGCACAACACTC 59.617 50.000 38.24 7.79 45.16 3.51
132 133 0.819582 AAAAGCTGCAGCACAACACT 59.180 45.000 38.24 15.14 45.16 3.55
133 134 0.925466 CAAAAGCTGCAGCACAACAC 59.075 50.000 38.24 9.36 45.16 3.32
134 135 0.179105 CCAAAAGCTGCAGCACAACA 60.179 50.000 38.24 0.00 45.16 3.33
135 136 0.877213 CCCAAAAGCTGCAGCACAAC 60.877 55.000 38.24 10.93 45.16 3.32
136 137 1.329171 ACCCAAAAGCTGCAGCACAA 61.329 50.000 38.24 0.00 45.16 3.33
137 138 1.737355 GACCCAAAAGCTGCAGCACA 61.737 55.000 38.24 0.00 45.16 4.57
138 139 1.006922 GACCCAAAAGCTGCAGCAC 60.007 57.895 38.24 12.54 45.16 4.40
139 140 1.152694 AGACCCAAAAGCTGCAGCA 60.153 52.632 38.24 0.00 45.16 4.41
140 141 1.288127 CAGACCCAAAAGCTGCAGC 59.712 57.895 31.53 31.53 42.49 5.25
141 142 0.825010 ACCAGACCCAAAAGCTGCAG 60.825 55.000 10.11 10.11 0.00 4.41
142 143 0.823356 GACCAGACCCAAAAGCTGCA 60.823 55.000 1.02 0.00 0.00 4.41
143 144 0.538287 AGACCAGACCCAAAAGCTGC 60.538 55.000 0.00 0.00 0.00 5.25
144 145 1.610522 CAAGACCAGACCCAAAAGCTG 59.389 52.381 0.00 0.00 0.00 4.24
145 146 1.215423 ACAAGACCAGACCCAAAAGCT 59.785 47.619 0.00 0.00 0.00 3.74
146 147 1.338020 CACAAGACCAGACCCAAAAGC 59.662 52.381 0.00 0.00 0.00 3.51
147 148 1.956477 CCACAAGACCAGACCCAAAAG 59.044 52.381 0.00 0.00 0.00 2.27
148 149 1.410932 CCCACAAGACCAGACCCAAAA 60.411 52.381 0.00 0.00 0.00 2.44
149 150 0.184933 CCCACAAGACCAGACCCAAA 59.815 55.000 0.00 0.00 0.00 3.28
150 151 0.696143 TCCCACAAGACCAGACCCAA 60.696 55.000 0.00 0.00 0.00 4.12
151 152 1.074090 TCCCACAAGACCAGACCCA 60.074 57.895 0.00 0.00 0.00 4.51
152 153 1.128188 AGTCCCACAAGACCAGACCC 61.128 60.000 0.00 0.00 37.49 4.46
153 154 1.550976 CTAGTCCCACAAGACCAGACC 59.449 57.143 0.00 0.00 37.49 3.85
154 155 1.550976 CCTAGTCCCACAAGACCAGAC 59.449 57.143 0.00 0.00 37.49 3.51
155 156 1.552486 CCCTAGTCCCACAAGACCAGA 60.552 57.143 0.00 0.00 37.49 3.86
156 157 0.905357 CCCTAGTCCCACAAGACCAG 59.095 60.000 0.00 0.00 37.49 4.00
157 158 1.198759 GCCCTAGTCCCACAAGACCA 61.199 60.000 0.00 0.00 37.49 4.02
158 159 1.602771 GCCCTAGTCCCACAAGACC 59.397 63.158 0.00 0.00 37.49 3.85
159 160 0.910088 AGGCCCTAGTCCCACAAGAC 60.910 60.000 0.00 0.00 37.01 3.01
160 161 0.178873 AAGGCCCTAGTCCCACAAGA 60.179 55.000 0.00 0.00 0.00 3.02
161 162 0.035056 CAAGGCCCTAGTCCCACAAG 60.035 60.000 0.00 0.00 0.00 3.16
162 163 1.497309 CCAAGGCCCTAGTCCCACAA 61.497 60.000 0.00 0.00 0.00 3.33
163 164 1.923395 CCAAGGCCCTAGTCCCACA 60.923 63.158 0.00 0.00 0.00 4.17
164 165 2.998949 CCAAGGCCCTAGTCCCAC 59.001 66.667 0.00 0.00 0.00 4.61
165 166 2.189558 TAGCCAAGGCCCTAGTCCCA 62.190 60.000 7.62 0.00 43.17 4.37
166 167 1.384082 TAGCCAAGGCCCTAGTCCC 60.384 63.158 7.62 0.00 43.17 4.46
167 168 1.697082 GGTAGCCAAGGCCCTAGTCC 61.697 65.000 7.62 0.00 43.17 3.85
168 169 0.691413 AGGTAGCCAAGGCCCTAGTC 60.691 60.000 7.62 0.00 43.17 2.59
169 170 0.253207 AAGGTAGCCAAGGCCCTAGT 60.253 55.000 7.62 0.00 43.17 2.57
170 171 0.181350 CAAGGTAGCCAAGGCCCTAG 59.819 60.000 7.62 0.00 43.17 3.02
171 172 0.549169 ACAAGGTAGCCAAGGCCCTA 60.549 55.000 7.62 0.00 43.17 3.53
172 173 1.435346 AACAAGGTAGCCAAGGCCCT 61.435 55.000 7.62 5.24 43.17 5.19
173 174 1.076727 AACAAGGTAGCCAAGGCCC 59.923 57.895 7.62 2.69 43.17 5.80
174 175 0.539669 ACAACAAGGTAGCCAAGGCC 60.540 55.000 7.62 0.00 43.17 5.19
175 176 1.328279 AACAACAAGGTAGCCAAGGC 58.672 50.000 2.02 2.02 42.33 4.35
176 177 4.368315 GAAAAACAACAAGGTAGCCAAGG 58.632 43.478 0.00 0.00 0.00 3.61
177 178 4.041723 CGAAAAACAACAAGGTAGCCAAG 58.958 43.478 0.00 0.00 0.00 3.61
178 179 3.444388 ACGAAAAACAACAAGGTAGCCAA 59.556 39.130 0.00 0.00 0.00 4.52
179 180 3.018149 ACGAAAAACAACAAGGTAGCCA 58.982 40.909 0.00 0.00 0.00 4.75
180 181 3.703286 ACGAAAAACAACAAGGTAGCC 57.297 42.857 0.00 0.00 0.00 3.93
181 182 3.242016 GCAACGAAAAACAACAAGGTAGC 59.758 43.478 0.00 0.00 0.00 3.58
182 183 4.668289 AGCAACGAAAAACAACAAGGTAG 58.332 39.130 0.00 0.00 0.00 3.18
183 184 4.396790 AGAGCAACGAAAAACAACAAGGTA 59.603 37.500 0.00 0.00 0.00 3.08
184 185 3.192633 AGAGCAACGAAAAACAACAAGGT 59.807 39.130 0.00 0.00 0.00 3.50
185 186 3.769536 AGAGCAACGAAAAACAACAAGG 58.230 40.909 0.00 0.00 0.00 3.61
186 187 5.541008 CAAAGAGCAACGAAAAACAACAAG 58.459 37.500 0.00 0.00 0.00 3.16
187 188 4.143221 GCAAAGAGCAACGAAAAACAACAA 60.143 37.500 0.00 0.00 44.79 2.83
188 189 3.366422 GCAAAGAGCAACGAAAAACAACA 59.634 39.130 0.00 0.00 44.79 3.33
189 190 3.911510 GCAAAGAGCAACGAAAAACAAC 58.088 40.909 0.00 0.00 44.79 3.32
200 201 9.524106 CAATTCATTGATAATAGCAAAGAGCAA 57.476 29.630 0.00 0.00 42.40 3.91
201 202 8.139350 CCAATTCATTGATAATAGCAAAGAGCA 58.861 33.333 0.00 0.00 42.40 4.26
202 203 7.115947 GCCAATTCATTGATAATAGCAAAGAGC 59.884 37.037 0.00 0.00 41.12 4.09
203 204 8.358148 AGCCAATTCATTGATAATAGCAAAGAG 58.642 33.333 0.00 0.00 40.14 2.85
204 205 8.241497 AGCCAATTCATTGATAATAGCAAAGA 57.759 30.769 0.00 0.00 40.14 2.52
205 206 9.403110 GTAGCCAATTCATTGATAATAGCAAAG 57.597 33.333 0.00 0.00 40.14 2.77
206 207 8.359642 GGTAGCCAATTCATTGATAATAGCAAA 58.640 33.333 0.00 0.00 40.14 3.68
207 208 7.725397 AGGTAGCCAATTCATTGATAATAGCAA 59.275 33.333 0.81 0.00 40.14 3.91
208 209 7.233632 AGGTAGCCAATTCATTGATAATAGCA 58.766 34.615 0.81 0.00 40.14 3.49
209 210 7.693969 AGGTAGCCAATTCATTGATAATAGC 57.306 36.000 0.81 0.00 40.14 2.97
210 211 9.071276 ACAAGGTAGCCAATTCATTGATAATAG 57.929 33.333 0.81 0.00 40.14 1.73
211 212 8.995027 ACAAGGTAGCCAATTCATTGATAATA 57.005 30.769 0.81 0.00 40.14 0.98
212 213 7.902920 ACAAGGTAGCCAATTCATTGATAAT 57.097 32.000 0.81 0.00 40.14 1.28
213 214 7.178274 ACAACAAGGTAGCCAATTCATTGATAA 59.822 33.333 0.81 0.00 40.14 1.75
214 215 6.663093 ACAACAAGGTAGCCAATTCATTGATA 59.337 34.615 0.81 0.00 40.14 2.15
215 216 5.481473 ACAACAAGGTAGCCAATTCATTGAT 59.519 36.000 0.81 0.00 40.14 2.57
216 217 4.832266 ACAACAAGGTAGCCAATTCATTGA 59.168 37.500 0.81 0.00 40.14 2.57
217 218 5.138125 ACAACAAGGTAGCCAATTCATTG 57.862 39.130 0.00 0.00 37.52 2.82
218 219 5.806654 AACAACAAGGTAGCCAATTCATT 57.193 34.783 0.00 0.00 0.00 2.57
219 220 5.806654 AAACAACAAGGTAGCCAATTCAT 57.193 34.783 0.00 0.00 0.00 2.57
220 221 5.606348 AAAACAACAAGGTAGCCAATTCA 57.394 34.783 0.00 0.00 0.00 2.57
221 222 5.174943 CGAAAAACAACAAGGTAGCCAATTC 59.825 40.000 0.00 0.00 0.00 2.17
222 223 5.047188 CGAAAAACAACAAGGTAGCCAATT 58.953 37.500 0.00 0.00 0.00 2.32
223 224 4.098807 ACGAAAAACAACAAGGTAGCCAAT 59.901 37.500 0.00 0.00 0.00 3.16
224 225 3.444388 ACGAAAAACAACAAGGTAGCCAA 59.556 39.130 0.00 0.00 0.00 4.52
225 226 3.018149 ACGAAAAACAACAAGGTAGCCA 58.982 40.909 0.00 0.00 0.00 4.75
226 227 3.703286 ACGAAAAACAACAAGGTAGCC 57.297 42.857 0.00 0.00 0.00 3.93
227 228 3.242016 GCAACGAAAAACAACAAGGTAGC 59.758 43.478 0.00 0.00 0.00 3.58
228 229 4.668289 AGCAACGAAAAACAACAAGGTAG 58.332 39.130 0.00 0.00 0.00 3.18
229 230 4.396790 AGAGCAACGAAAAACAACAAGGTA 59.603 37.500 0.00 0.00 0.00 3.08
230 231 3.192633 AGAGCAACGAAAAACAACAAGGT 59.807 39.130 0.00 0.00 0.00 3.50
231 232 3.769536 AGAGCAACGAAAAACAACAAGG 58.230 40.909 0.00 0.00 0.00 3.61
232 233 5.541008 CAAAGAGCAACGAAAAACAACAAG 58.459 37.500 0.00 0.00 0.00 3.16
233 234 4.143221 GCAAAGAGCAACGAAAAACAACAA 60.143 37.500 0.00 0.00 44.79 2.83
234 235 3.366422 GCAAAGAGCAACGAAAAACAACA 59.634 39.130 0.00 0.00 44.79 3.33
235 236 3.911510 GCAAAGAGCAACGAAAAACAAC 58.088 40.909 0.00 0.00 44.79 3.32
246 247 9.524106 CAATTCATTGATAATAGCAAAGAGCAA 57.476 29.630 0.00 0.00 42.40 3.91
247 248 7.650504 GCAATTCATTGATAATAGCAAAGAGCA 59.349 33.333 3.60 0.00 42.40 4.26
248 249 7.115947 GGCAATTCATTGATAATAGCAAAGAGC 59.884 37.037 3.60 0.00 41.12 4.09
249 250 8.139350 TGGCAATTCATTGATAATAGCAAAGAG 58.861 33.333 3.60 0.00 40.14 2.85
250 251 8.009622 TGGCAATTCATTGATAATAGCAAAGA 57.990 30.769 3.60 0.00 40.14 2.52
251 252 7.095774 GCTGGCAATTCATTGATAATAGCAAAG 60.096 37.037 3.60 0.00 40.14 2.77
252 253 6.702723 GCTGGCAATTCATTGATAATAGCAAA 59.297 34.615 3.60 0.00 40.14 3.68
253 254 6.218019 GCTGGCAATTCATTGATAATAGCAA 58.782 36.000 3.60 0.00 40.14 3.91
254 255 5.563280 CGCTGGCAATTCATTGATAATAGCA 60.563 40.000 3.60 0.00 40.14 3.49
255 256 4.855388 CGCTGGCAATTCATTGATAATAGC 59.145 41.667 3.60 4.44 40.14 2.97
256 257 6.245115 TCGCTGGCAATTCATTGATAATAG 57.755 37.500 3.60 0.00 40.14 1.73
257 258 6.207221 ACATCGCTGGCAATTCATTGATAATA 59.793 34.615 3.60 0.00 40.14 0.98
258 259 5.010314 ACATCGCTGGCAATTCATTGATAAT 59.990 36.000 3.60 0.00 40.14 1.28
259 260 4.338964 ACATCGCTGGCAATTCATTGATAA 59.661 37.500 3.60 0.00 40.14 1.75
260 261 3.884693 ACATCGCTGGCAATTCATTGATA 59.115 39.130 3.60 0.00 40.14 2.15
261 262 2.691526 ACATCGCTGGCAATTCATTGAT 59.308 40.909 3.60 0.00 40.14 2.57
262 263 2.093890 ACATCGCTGGCAATTCATTGA 58.906 42.857 3.60 0.00 40.14 2.57
263 264 2.572191 ACATCGCTGGCAATTCATTG 57.428 45.000 0.00 0.00 40.66 2.82
264 265 2.417651 CCAACATCGCTGGCAATTCATT 60.418 45.455 0.00 0.00 0.00 2.57
265 266 1.135527 CCAACATCGCTGGCAATTCAT 59.864 47.619 0.00 0.00 0.00 2.57
266 267 0.527113 CCAACATCGCTGGCAATTCA 59.473 50.000 0.00 0.00 0.00 2.57
267 268 0.810648 TCCAACATCGCTGGCAATTC 59.189 50.000 0.00 0.00 33.63 2.17
268 269 1.406539 GATCCAACATCGCTGGCAATT 59.593 47.619 0.00 0.00 33.63 2.32
269 270 1.027357 GATCCAACATCGCTGGCAAT 58.973 50.000 0.00 0.00 33.63 3.56
270 271 0.035152 AGATCCAACATCGCTGGCAA 60.035 50.000 0.00 0.00 33.63 4.52
271 272 0.035152 AAGATCCAACATCGCTGGCA 60.035 50.000 0.00 0.00 33.63 4.92
272 273 1.098050 AAAGATCCAACATCGCTGGC 58.902 50.000 0.00 0.00 33.63 4.85
273 274 4.963276 TTTAAAGATCCAACATCGCTGG 57.037 40.909 0.00 0.00 35.05 4.85
294 295 5.700373 ACATGCTGCCGTTGATTTTATTTTT 59.300 32.000 0.00 0.00 0.00 1.94
295 296 5.237048 ACATGCTGCCGTTGATTTTATTTT 58.763 33.333 0.00 0.00 0.00 1.82
296 297 4.819769 ACATGCTGCCGTTGATTTTATTT 58.180 34.783 0.00 0.00 0.00 1.40
297 298 4.082300 TGACATGCTGCCGTTGATTTTATT 60.082 37.500 0.00 0.00 0.00 1.40
298 299 3.443329 TGACATGCTGCCGTTGATTTTAT 59.557 39.130 0.00 0.00 0.00 1.40
299 300 2.816672 TGACATGCTGCCGTTGATTTTA 59.183 40.909 0.00 0.00 0.00 1.52
300 301 1.612950 TGACATGCTGCCGTTGATTTT 59.387 42.857 0.00 0.00 0.00 1.82
301 302 1.246649 TGACATGCTGCCGTTGATTT 58.753 45.000 0.00 0.00 0.00 2.17
302 303 1.068333 GTTGACATGCTGCCGTTGATT 60.068 47.619 0.00 0.00 0.00 2.57
303 304 0.523072 GTTGACATGCTGCCGTTGAT 59.477 50.000 0.00 0.00 0.00 2.57
304 305 1.514678 GGTTGACATGCTGCCGTTGA 61.515 55.000 0.00 0.00 0.00 3.18
305 306 1.081242 GGTTGACATGCTGCCGTTG 60.081 57.895 0.00 0.00 0.00 4.10
306 307 1.228245 AGGTTGACATGCTGCCGTT 60.228 52.632 0.00 0.00 0.00 4.44
307 308 1.968017 CAGGTTGACATGCTGCCGT 60.968 57.895 0.00 0.00 0.00 5.68
308 309 2.693762 CCAGGTTGACATGCTGCCG 61.694 63.158 0.00 0.00 0.00 5.69
309 310 2.998279 GCCAGGTTGACATGCTGCC 61.998 63.158 0.00 0.00 0.00 4.85
310 311 0.677731 TAGCCAGGTTGACATGCTGC 60.678 55.000 0.00 0.00 0.00 5.25
311 312 1.339438 ACTAGCCAGGTTGACATGCTG 60.339 52.381 0.00 0.00 0.00 4.41
312 313 0.987294 ACTAGCCAGGTTGACATGCT 59.013 50.000 0.00 0.00 0.00 3.79
313 314 1.089920 CACTAGCCAGGTTGACATGC 58.910 55.000 0.00 0.00 0.00 4.06
314 315 2.479566 ACACTAGCCAGGTTGACATG 57.520 50.000 0.00 0.00 0.00 3.21
315 316 3.682718 GCATACACTAGCCAGGTTGACAT 60.683 47.826 0.00 0.00 0.00 3.06
316 317 2.354704 GCATACACTAGCCAGGTTGACA 60.355 50.000 0.00 0.00 0.00 3.58
317 318 2.280628 GCATACACTAGCCAGGTTGAC 58.719 52.381 0.00 0.00 0.00 3.18
318 319 1.905894 TGCATACACTAGCCAGGTTGA 59.094 47.619 0.00 0.00 0.00 3.18
319 320 2.283298 CTGCATACACTAGCCAGGTTG 58.717 52.381 0.00 0.00 0.00 3.77
320 321 1.407437 GCTGCATACACTAGCCAGGTT 60.407 52.381 0.00 0.00 0.00 3.50
321 322 0.179000 GCTGCATACACTAGCCAGGT 59.821 55.000 0.00 0.00 0.00 4.00
326 327 0.179111 TCGGTGCTGCATACACTAGC 60.179 55.000 16.81 2.76 38.14 3.42
380 389 1.217244 CCACGGTTTACCTCGGAGG 59.783 63.158 22.40 22.40 42.49 4.30
405 414 4.307908 GTTGTGTGTCCACCGCGC 62.308 66.667 0.00 0.00 41.09 6.86
406 415 3.995669 CGTTGTGTGTCCACCGCG 61.996 66.667 0.00 0.00 41.09 6.46
470 479 1.789078 GCGGATAGCGGAGGTACGAA 61.789 60.000 0.00 0.00 45.86 3.85
543 552 4.286320 CTTCCTCCGGGGATCGCG 62.286 72.222 0.37 0.00 44.66 5.87
544 553 2.838225 TCTTCCTCCGGGGATCGC 60.838 66.667 0.37 0.06 44.66 4.58
624 666 3.379445 GAAGGGGTGACGAGGCGA 61.379 66.667 0.00 0.00 0.00 5.54
650 692 2.687805 CGTTCTCGCTCACGGAGGA 61.688 63.158 3.56 0.00 40.63 3.71
653 695 2.559840 GACGTTCTCGCTCACGGA 59.440 61.111 0.00 0.00 40.84 4.69
655 697 2.870161 CGGACGTTCTCGCTCACG 60.870 66.667 0.00 0.00 42.29 4.35
656 698 1.796749 GACGGACGTTCTCGCTCAC 60.797 63.158 0.00 0.00 41.18 3.51
657 699 2.255881 TGACGGACGTTCTCGCTCA 61.256 57.895 0.00 0.00 41.18 4.26
660 702 1.443872 ATGTGACGGACGTTCTCGC 60.444 57.895 0.00 0.00 41.18 5.03
662 704 0.038526 ACCATGTGACGGACGTTCTC 60.039 55.000 0.00 0.00 0.00 2.87
663 705 0.038526 GACCATGTGACGGACGTTCT 60.039 55.000 0.00 0.00 0.00 3.01
664 706 1.012486 GGACCATGTGACGGACGTTC 61.012 60.000 0.00 0.00 0.00 3.95
665 707 1.005394 GGACCATGTGACGGACGTT 60.005 57.895 0.00 0.00 0.00 3.99
666 708 1.906824 AGGACCATGTGACGGACGT 60.907 57.895 0.00 0.00 0.00 4.34
675 717 2.592993 CGGTGTCCCAGGACCATGT 61.593 63.158 14.19 0.00 43.97 3.21
677 719 2.203938 ACGGTGTCCCAGGACCAT 60.204 61.111 14.19 0.00 43.97 3.55
786 832 1.378514 GGGCATCTTTTCTGGCGGA 60.379 57.895 0.00 0.00 39.90 5.54
840 891 2.036006 GTATTTGTGGGCGCGTCCA 61.036 57.895 32.02 32.02 36.21 4.02
920 981 0.986019 TCACTGTTCACACCCACCCT 60.986 55.000 0.00 0.00 0.00 4.34
972 1037 4.675029 ACCGACAAACCCCGCTCG 62.675 66.667 0.00 0.00 0.00 5.03
973 1038 2.741211 GACCGACAAACCCCGCTC 60.741 66.667 0.00 0.00 0.00 5.03
974 1039 4.675029 CGACCGACAAACCCCGCT 62.675 66.667 0.00 0.00 0.00 5.52
1261 1344 2.281517 AGACATACGAGACGAGACTGG 58.718 52.381 0.00 0.00 0.00 4.00
1263 1346 3.530265 AGAGACATACGAGACGAGACT 57.470 47.619 0.00 0.00 0.00 3.24
1264 1347 3.786161 GCAAGAGACATACGAGACGAGAC 60.786 52.174 0.00 0.00 0.00 3.36
1276 1359 0.111061 TGGTGCCAAGCAAGAGACAT 59.889 50.000 0.00 0.00 41.47 3.06
1333 1416 0.854218 TCACTGGCCACCCCTAAAAA 59.146 50.000 0.00 0.00 0.00 1.94
1334 1417 0.404040 CTCACTGGCCACCCCTAAAA 59.596 55.000 0.00 0.00 0.00 1.52
1335 1418 0.770557 ACTCACTGGCCACCCCTAAA 60.771 55.000 0.00 0.00 0.00 1.85
1336 1419 0.770557 AACTCACTGGCCACCCCTAA 60.771 55.000 0.00 0.00 0.00 2.69
1338 1421 2.450502 AACTCACTGGCCACCCCT 60.451 61.111 0.00 0.00 0.00 4.79
1339 1422 2.282462 CAACTCACTGGCCACCCC 60.282 66.667 0.00 0.00 0.00 4.95
1340 1423 2.983725 AAGCAACTCACTGGCCACCC 62.984 60.000 0.00 0.00 0.00 4.61
1343 1426 0.606401 GCTAAGCAACTCACTGGCCA 60.606 55.000 4.71 4.71 0.00 5.36
1369 1452 3.488310 CGGAAAATACATCGGAACTACGG 59.512 47.826 0.00 0.00 0.00 4.02
1372 1455 5.327616 TGTCGGAAAATACATCGGAACTA 57.672 39.130 0.00 0.00 0.00 2.24
1373 1456 4.196626 TGTCGGAAAATACATCGGAACT 57.803 40.909 0.00 0.00 0.00 3.01
1375 1458 3.936453 CCTTGTCGGAAAATACATCGGAA 59.064 43.478 0.00 0.00 33.16 4.30
1377 1460 3.527533 TCCTTGTCGGAAAATACATCGG 58.472 45.455 0.00 0.00 39.40 4.18
1390 1473 3.674753 GGCAAATGTTCAAATCCTTGTCG 59.325 43.478 0.00 0.00 33.94 4.35
1391 1474 4.630111 TGGCAAATGTTCAAATCCTTGTC 58.370 39.130 0.00 0.00 33.94 3.18
1392 1475 4.686191 TGGCAAATGTTCAAATCCTTGT 57.314 36.364 0.00 0.00 33.94 3.16
1393 1476 4.453136 CCTTGGCAAATGTTCAAATCCTTG 59.547 41.667 0.00 0.00 0.00 3.61
1394 1477 4.505390 CCCTTGGCAAATGTTCAAATCCTT 60.505 41.667 0.00 0.00 0.00 3.36
1395 1478 3.008266 CCCTTGGCAAATGTTCAAATCCT 59.992 43.478 0.00 0.00 0.00 3.24
1396 1479 3.244526 ACCCTTGGCAAATGTTCAAATCC 60.245 43.478 0.00 0.00 0.00 3.01
1401 1484 4.443598 GGTTTTACCCTTGGCAAATGTTCA 60.444 41.667 0.00 0.00 30.04 3.18
1408 1491 2.463047 ACTGGTTTTACCCTTGGCAA 57.537 45.000 0.00 0.00 37.50 4.52
1417 1500 7.832503 TTAGTCGCCTATTAACTGGTTTTAC 57.167 36.000 0.00 0.00 0.00 2.01
1423 1506 5.416947 AGTGTTTAGTCGCCTATTAACTGG 58.583 41.667 0.00 0.00 0.00 4.00
1424 1507 5.229469 CGAGTGTTTAGTCGCCTATTAACTG 59.771 44.000 0.00 0.00 42.20 3.16
1428 1726 5.066893 ACATCGAGTGTTTAGTCGCCTATTA 59.933 40.000 0.00 0.00 46.69 0.98
1429 1727 4.142227 ACATCGAGTGTTTAGTCGCCTATT 60.142 41.667 0.00 0.00 46.69 1.73
1450 1748 8.690203 TTTGGATCTCAGTTCAAAATTCTACA 57.310 30.769 0.00 0.00 0.00 2.74
1483 3121 3.594603 TGGATGAGGTCGAAGAAGAAC 57.405 47.619 0.00 0.00 39.69 3.01
1490 3128 0.612744 TGTGCATGGATGAGGTCGAA 59.387 50.000 0.00 0.00 0.00 3.71
1496 3134 2.103537 TGTCAGTGTGCATGGATGAG 57.896 50.000 0.00 0.00 0.00 2.90
1548 3735 2.093816 TGCATTTTGATTGCCCGCAATA 60.094 40.909 14.60 0.21 45.50 1.90
2093 4549 5.164620 TGAGATTAACATCTTCCTGTGCA 57.835 39.130 0.00 0.00 40.14 4.57
2141 4597 3.772572 TGGACCATGAGATAGAAAACCGA 59.227 43.478 0.00 0.00 0.00 4.69
2185 4642 0.887387 TGCTACGGTTCCAGCCAAAC 60.887 55.000 0.00 0.00 36.95 2.93
2230 4694 6.038271 GTGGTAACTCTTGTGTTTCATTCAGT 59.962 38.462 0.00 0.00 37.61 3.41
2301 4770 1.922545 GTAATACGCGACGCCTTCTTT 59.077 47.619 15.93 4.01 0.00 2.52
2382 4851 1.609555 TGGTTAGTTCCGCGCAAAAAT 59.390 42.857 8.75 2.17 0.00 1.82
2400 4869 2.189594 TCACAGGTTGAAGCAGATGG 57.810 50.000 0.00 0.00 0.00 3.51
2406 4875 1.609072 GGAGGTTTCACAGGTTGAAGC 59.391 52.381 0.00 0.00 45.22 3.86
2407 4876 2.930950 TGGAGGTTTCACAGGTTGAAG 58.069 47.619 0.00 0.00 45.22 3.02
2423 4892 3.931907 TGTATTCAGGTTCCCATGGAG 57.068 47.619 15.22 3.25 31.21 3.86
2458 4944 2.094854 GCCTGCTCAGTTTTCATGGAAG 60.095 50.000 0.00 0.00 0.00 3.46
2527 5013 2.223923 CCAGCCTCCATACTTCTTCTCG 60.224 54.545 0.00 0.00 0.00 4.04
2625 5129 9.661563 CCAATTCCAAACTACAAGTATACAGTA 57.338 33.333 5.50 6.81 0.00 2.74
2626 5130 8.380099 TCCAATTCCAAACTACAAGTATACAGT 58.620 33.333 5.50 5.97 0.00 3.55
2627 5131 8.786826 TCCAATTCCAAACTACAAGTATACAG 57.213 34.615 5.50 0.00 0.00 2.74
2628 5132 9.226606 CTTCCAATTCCAAACTACAAGTATACA 57.773 33.333 5.50 0.00 0.00 2.29
2629 5133 8.182227 GCTTCCAATTCCAAACTACAAGTATAC 58.818 37.037 0.00 0.00 0.00 1.47
2630 5134 8.107095 AGCTTCCAATTCCAAACTACAAGTATA 58.893 33.333 0.00 0.00 0.00 1.47
2631 5135 6.948309 AGCTTCCAATTCCAAACTACAAGTAT 59.052 34.615 0.00 0.00 0.00 2.12
2632 5136 6.303839 AGCTTCCAATTCCAAACTACAAGTA 58.696 36.000 0.00 0.00 0.00 2.24
2650 5154 7.491048 GCTTTCTCAGTATATATGCTAGCTTCC 59.509 40.741 17.23 0.00 0.00 3.46
2729 5239 5.739161 GCTCAATACGCAAAATCACTTTAGG 59.261 40.000 0.00 0.00 0.00 2.69
2739 5249 4.495911 TGTTCATGCTCAATACGCAAAA 57.504 36.364 0.00 0.00 41.26 2.44
2763 5748 5.288804 ACATACAAAAACTTCCACATGCAC 58.711 37.500 0.00 0.00 0.00 4.57
2789 5774 3.804873 TGTTTTGCATTTTACTTTCGGGC 59.195 39.130 0.00 0.00 0.00 6.13
2892 5878 9.830186 ACCTTTCATATCAGAGGTACATACTAT 57.170 33.333 0.00 0.00 40.59 2.12
2893 5879 9.656323 AACCTTTCATATCAGAGGTACATACTA 57.344 33.333 0.00 0.00 41.49 1.82
2894 5880 8.424918 CAACCTTTCATATCAGAGGTACATACT 58.575 37.037 0.00 0.00 41.49 2.12
2984 6033 6.524101 AAGGTCTTAAAACAAAAGTCAGCA 57.476 33.333 0.00 0.00 0.00 4.41
3229 9182 6.516718 TGAGCCTAGTATGATTTACTCTTGC 58.483 40.000 0.00 0.00 0.00 4.01
3230 9183 6.644592 GCTGAGCCTAGTATGATTTACTCTTG 59.355 42.308 0.00 0.00 0.00 3.02
3312 9413 8.533657 TCAAGATTTCTTATCACTTACGGGTTA 58.466 33.333 0.00 0.00 34.28 2.85
3417 9535 4.517285 CCTTCTGAGCTGCCTACATTTTA 58.483 43.478 0.00 0.00 0.00 1.52
3474 10909 2.972713 AGTTGAGTTGGTAAGAGCCTCA 59.027 45.455 0.00 0.00 0.00 3.86
3513 10948 0.322906 GGAAGTCCCTGGCTCTTTGG 60.323 60.000 0.00 0.00 0.00 3.28
3582 11031 5.894266 CGTCGGTGTCATATTTTGTTTATCG 59.106 40.000 0.00 0.00 0.00 2.92
3597 11141 0.810031 ATGGCATAAGCGTCGGTGTC 60.810 55.000 0.00 0.00 43.41 3.67
3598 11142 0.810031 GATGGCATAAGCGTCGGTGT 60.810 55.000 0.00 0.00 43.41 4.16
3599 11143 0.809636 TGATGGCATAAGCGTCGGTG 60.810 55.000 0.00 0.00 43.41 4.94
3605 11149 1.813896 CAACGTTGATGGCATAAGCG 58.186 50.000 23.90 18.25 43.41 4.68
3627 11171 1.606668 GTCGACAAACCTGCATCCAAA 59.393 47.619 11.55 0.00 0.00 3.28
3800 11413 4.077188 GGCGTCTGCTGCGTCAAC 62.077 66.667 7.03 0.00 42.25 3.18
3870 11483 5.235186 CGATGATGTAAAACCTAGAGCTTGG 59.765 44.000 0.00 0.00 0.00 3.61
3893 11510 3.725356 CGACAATATTCATCGGAATGCG 58.275 45.455 9.76 0.00 43.47 4.73
4087 11742 3.906720 AAGCCAGTTAGAATTCGCCTA 57.093 42.857 0.00 0.00 0.00 3.93
4260 11918 8.093307 AGGTTAGTATATGCATGACAAGATGAG 58.907 37.037 10.16 0.00 0.00 2.90
4387 13297 1.908340 ATGGCCTTCTTCAGCTCGCT 61.908 55.000 3.32 0.00 0.00 4.93
4587 13497 3.266772 TGGGTAATTCAGAAGCACTCCAT 59.733 43.478 0.00 0.00 0.00 3.41
4589 13499 3.350219 TGGGTAATTCAGAAGCACTCC 57.650 47.619 0.00 0.00 0.00 3.85
4590 13500 3.440522 GGTTGGGTAATTCAGAAGCACTC 59.559 47.826 0.00 0.00 0.00 3.51
4606 13516 2.094675 GACAACATCAGGATGGTTGGG 58.905 52.381 13.40 0.00 42.91 4.12
4607 13517 2.794103 TGACAACATCAGGATGGTTGG 58.206 47.619 13.40 0.00 42.91 3.77
4644 13554 3.009723 CCATTCGAACAACAGTAGGCAT 58.990 45.455 0.00 0.00 0.00 4.40
4661 13571 4.796110 ACAGTAGGCATATGGTTCCATT 57.204 40.909 9.70 0.00 0.00 3.16
4664 13574 3.886123 ACAACAGTAGGCATATGGTTCC 58.114 45.455 4.56 0.00 0.00 3.62
4666 13576 3.938963 CGAACAACAGTAGGCATATGGTT 59.061 43.478 4.56 0.00 0.00 3.67
4720 13630 9.565213 CTTTTATTCTCATTTGGTAGAGCAAAG 57.435 33.333 12.00 5.53 0.00 2.77
4838 13749 3.222287 CCTCTAGGAGGCAAGAGCT 57.778 57.895 0.34 0.00 43.29 4.09
4875 13787 0.612174 ACTTAGGCAGCGGACAGAGA 60.612 55.000 0.00 0.00 0.00 3.10
4888 13800 1.739067 CGGAGGAAGGCAAACTTAGG 58.261 55.000 0.00 0.00 40.21 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.