Multiple sequence alignment - TraesCS4D01G034800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G034800 chr4D 100.000 4324 0 0 1 4324 15794336 15798659 0.000000e+00 7986
1 TraesCS4D01G034800 chr4D 83.489 1502 213 21 1832 3326 15788696 15790169 0.000000e+00 1367
2 TraesCS4D01G034800 chr4D 89.322 590 59 1 1 590 439750286 439749701 0.000000e+00 737
3 TraesCS4D01G034800 chr4B 91.365 1795 138 11 1609 3395 27125575 27127360 0.000000e+00 2440
4 TraesCS4D01G034800 chr4B 83.524 1487 213 20 1854 3326 27111471 27112939 0.000000e+00 1360
5 TraesCS4D01G034800 chr4B 88.636 572 34 9 697 1255 27123458 27124011 0.000000e+00 667
6 TraesCS4D01G034800 chr4B 87.543 578 70 2 15 591 88221997 88222573 0.000000e+00 667
7 TraesCS4D01G034800 chr4B 88.361 421 36 6 3487 3904 27127362 27127772 1.080000e-135 494
8 TraesCS4D01G034800 chr4B 84.123 359 53 2 3970 4324 27128112 27128470 1.150000e-90 344
9 TraesCS4D01G034800 chr4A 83.717 1259 192 8 1804 3054 584812467 584811214 0.000000e+00 1177
10 TraesCS4D01G034800 chr5D 89.456 588 62 0 1 588 469514202 469514789 0.000000e+00 743
11 TraesCS4D01G034800 chr1D 88.225 586 68 1 6 591 278098537 278099121 0.000000e+00 699
12 TraesCS4D01G034800 chr3B 87.838 592 68 4 1 591 61647623 61647035 0.000000e+00 691
13 TraesCS4D01G034800 chr6B 88.441 571 61 2 5 575 408204856 408205421 0.000000e+00 684
14 TraesCS4D01G034800 chrUn 87.863 585 63 6 5 587 92632195 92632773 0.000000e+00 680
15 TraesCS4D01G034800 chrUn 87.372 586 71 3 6 591 87873374 87872792 0.000000e+00 669
16 TraesCS4D01G034800 chr1A 87.350 585 74 0 7 591 20082778 20083362 0.000000e+00 671


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G034800 chr4D 15794336 15798659 4323 False 7986.00 7986 100.00000 1 4324 1 chr4D.!!$F2 4323
1 TraesCS4D01G034800 chr4D 15788696 15790169 1473 False 1367.00 1367 83.48900 1832 3326 1 chr4D.!!$F1 1494
2 TraesCS4D01G034800 chr4D 439749701 439750286 585 True 737.00 737 89.32200 1 590 1 chr4D.!!$R1 589
3 TraesCS4D01G034800 chr4B 27111471 27112939 1468 False 1360.00 1360 83.52400 1854 3326 1 chr4B.!!$F1 1472
4 TraesCS4D01G034800 chr4B 27123458 27128470 5012 False 986.25 2440 88.12125 697 4324 4 chr4B.!!$F3 3627
5 TraesCS4D01G034800 chr4B 88221997 88222573 576 False 667.00 667 87.54300 15 591 1 chr4B.!!$F2 576
6 TraesCS4D01G034800 chr4A 584811214 584812467 1253 True 1177.00 1177 83.71700 1804 3054 1 chr4A.!!$R1 1250
7 TraesCS4D01G034800 chr5D 469514202 469514789 587 False 743.00 743 89.45600 1 588 1 chr5D.!!$F1 587
8 TraesCS4D01G034800 chr1D 278098537 278099121 584 False 699.00 699 88.22500 6 591 1 chr1D.!!$F1 585
9 TraesCS4D01G034800 chr3B 61647035 61647623 588 True 691.00 691 87.83800 1 591 1 chr3B.!!$R1 590
10 TraesCS4D01G034800 chr6B 408204856 408205421 565 False 684.00 684 88.44100 5 575 1 chr6B.!!$F1 570
11 TraesCS4D01G034800 chrUn 92632195 92632773 578 False 680.00 680 87.86300 5 587 1 chrUn.!!$F1 582
12 TraesCS4D01G034800 chrUn 87872792 87873374 582 True 669.00 669 87.37200 6 591 1 chrUn.!!$R1 585
13 TraesCS4D01G034800 chr1A 20082778 20083362 584 False 671.00 671 87.35000 7 591 1 chr1A.!!$F1 584

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
983 998 0.036875 GGGTTTCCACTCCACTCTGG 59.963 60.0 0.00 0.0 39.43 3.86 F
2618 3911 0.034186 TGGCCTTGGTATTGCTCCAG 60.034 55.0 3.32 0.0 36.28 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2633 3926 0.393537 GAGCCCACCACTCCAATGAG 60.394 60.0 0.0 0.0 44.62 2.90 R
3578 4888 0.236187 GCCGTGAAACATTGTACGCA 59.764 50.0 5.3 0.0 35.74 5.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 5.788533 TCCAAGATCTTAGGTTTTCACCCTA 59.211 40.000 7.86 0.00 45.63 3.53
95 96 3.007398 AGTCCGAGCTCTCAAGACAATTT 59.993 43.478 12.85 0.00 35.91 1.82
102 103 5.862845 AGCTCTCAAGACAATTTCTTCAGA 58.137 37.500 4.72 4.72 43.23 3.27
213 214 0.674581 TGAATTCCTCCAGTGCTGCG 60.675 55.000 2.27 0.00 0.00 5.18
240 241 0.954449 CTTGACACTGCTGCTCCTGG 60.954 60.000 0.00 0.00 0.00 4.45
304 305 0.467659 CCCGTCTAACCGATCCTCCT 60.468 60.000 0.00 0.00 0.00 3.69
336 337 3.265791 CCATGACCTTCTCTACAGTTGC 58.734 50.000 0.00 0.00 0.00 4.17
358 359 5.105106 TGCCTACACCATAGAAATCGAGAAA 60.105 40.000 0.00 0.00 0.00 2.52
373 374 2.159156 CGAGAAACCGACATGTCCCATA 60.159 50.000 20.03 0.00 0.00 2.74
422 423 0.320421 CACCGTCATGGAACCTCGTT 60.320 55.000 0.00 0.00 42.00 3.85
435 438 0.179048 CCTCGTTGGCTGATATGGCA 60.179 55.000 0.00 0.00 40.80 4.92
438 441 1.134128 TCGTTGGCTGATATGGCATGT 60.134 47.619 10.98 2.44 42.07 3.21
441 444 3.213506 GTTGGCTGATATGGCATGTACA 58.786 45.455 10.98 0.00 42.07 2.90
469 472 8.231692 TGAATTCTATCCGATCCAGATATCTC 57.768 38.462 1.03 0.00 0.00 2.75
488 491 2.060980 GGGCAGGATCTCCGACAGT 61.061 63.158 0.00 0.00 42.08 3.55
523 526 1.974957 TCGGTGACCAAATCAAGGAGA 59.025 47.619 1.11 0.00 39.72 3.71
555 558 1.349627 GACGTTGCCATGATGCGAG 59.650 57.895 0.00 0.00 0.00 5.03
591 594 1.822371 ACCACCATTATTTTCACGGCC 59.178 47.619 0.00 0.00 0.00 6.13
592 595 1.821753 CCACCATTATTTTCACGGCCA 59.178 47.619 2.24 0.00 0.00 5.36
593 596 2.232452 CCACCATTATTTTCACGGCCAA 59.768 45.455 2.24 0.00 0.00 4.52
594 597 3.249917 CACCATTATTTTCACGGCCAAC 58.750 45.455 2.24 0.00 0.00 3.77
595 598 3.056891 CACCATTATTTTCACGGCCAACT 60.057 43.478 2.24 0.00 0.00 3.16
596 599 3.576550 ACCATTATTTTCACGGCCAACTT 59.423 39.130 2.24 0.00 0.00 2.66
597 600 3.925913 CCATTATTTTCACGGCCAACTTG 59.074 43.478 2.24 0.00 0.00 3.16
598 601 3.651803 TTATTTTCACGGCCAACTTGG 57.348 42.857 2.24 3.10 41.55 3.61
599 602 1.698506 ATTTTCACGGCCAACTTGGA 58.301 45.000 12.37 0.00 40.96 3.53
600 603 1.028905 TTTTCACGGCCAACTTGGAG 58.971 50.000 12.37 7.04 40.96 3.86
601 604 0.181587 TTTCACGGCCAACTTGGAGA 59.818 50.000 12.37 0.81 40.96 3.71
602 605 0.181587 TTCACGGCCAACTTGGAGAA 59.818 50.000 12.37 6.65 40.96 2.87
603 606 0.534203 TCACGGCCAACTTGGAGAAC 60.534 55.000 12.37 0.00 40.96 3.01
604 607 0.817634 CACGGCCAACTTGGAGAACA 60.818 55.000 12.37 0.00 40.96 3.18
605 608 0.106918 ACGGCCAACTTGGAGAACAA 60.107 50.000 12.37 0.00 40.96 2.83
606 609 1.247567 CGGCCAACTTGGAGAACAAT 58.752 50.000 12.37 0.00 40.96 2.71
607 610 2.224670 ACGGCCAACTTGGAGAACAATA 60.225 45.455 12.37 0.00 40.96 1.90
608 611 3.016736 CGGCCAACTTGGAGAACAATAT 58.983 45.455 12.37 0.00 40.96 1.28
609 612 3.065371 CGGCCAACTTGGAGAACAATATC 59.935 47.826 12.37 0.00 40.96 1.63
610 613 4.016444 GGCCAACTTGGAGAACAATATCA 58.984 43.478 12.37 0.00 40.96 2.15
611 614 4.646492 GGCCAACTTGGAGAACAATATCAT 59.354 41.667 12.37 0.00 40.96 2.45
612 615 5.827797 GGCCAACTTGGAGAACAATATCATA 59.172 40.000 12.37 0.00 40.96 2.15
613 616 6.238759 GGCCAACTTGGAGAACAATATCATAC 60.239 42.308 12.37 0.00 40.96 2.39
614 617 6.318648 GCCAACTTGGAGAACAATATCATACA 59.681 38.462 12.37 0.00 40.96 2.29
615 618 7.679638 GCCAACTTGGAGAACAATATCATACAC 60.680 40.741 12.37 0.00 40.96 2.90
616 619 7.554118 CCAACTTGGAGAACAATATCATACACT 59.446 37.037 0.92 0.00 40.96 3.55
617 620 8.607459 CAACTTGGAGAACAATATCATACACTC 58.393 37.037 0.00 0.00 38.65 3.51
618 621 8.083828 ACTTGGAGAACAATATCATACACTCT 57.916 34.615 0.00 0.00 38.65 3.24
619 622 9.201989 ACTTGGAGAACAATATCATACACTCTA 57.798 33.333 0.00 0.00 38.65 2.43
620 623 9.689976 CTTGGAGAACAATATCATACACTCTAG 57.310 37.037 0.00 0.00 38.65 2.43
621 624 7.661968 TGGAGAACAATATCATACACTCTAGC 58.338 38.462 0.00 0.00 0.00 3.42
622 625 7.287696 TGGAGAACAATATCATACACTCTAGCA 59.712 37.037 0.00 0.00 0.00 3.49
623 626 8.144478 GGAGAACAATATCATACACTCTAGCAA 58.856 37.037 0.00 0.00 0.00 3.91
624 627 9.190858 GAGAACAATATCATACACTCTAGCAAG 57.809 37.037 0.00 0.00 0.00 4.01
625 628 8.918116 AGAACAATATCATACACTCTAGCAAGA 58.082 33.333 0.00 0.00 0.00 3.02
626 629 8.879342 AACAATATCATACACTCTAGCAAGAC 57.121 34.615 0.00 0.00 0.00 3.01
627 630 8.243961 ACAATATCATACACTCTAGCAAGACT 57.756 34.615 0.00 0.00 0.00 3.24
628 631 8.356657 ACAATATCATACACTCTAGCAAGACTC 58.643 37.037 0.00 0.00 0.00 3.36
629 632 4.884458 TCATACACTCTAGCAAGACTCG 57.116 45.455 0.00 0.00 0.00 4.18
630 633 3.065510 TCATACACTCTAGCAAGACTCGC 59.934 47.826 0.00 0.00 0.00 5.03
631 634 0.528470 ACACTCTAGCAAGACTCGCC 59.472 55.000 0.00 0.00 0.00 5.54
632 635 0.814457 CACTCTAGCAAGACTCGCCT 59.186 55.000 0.00 0.00 0.00 5.52
633 636 0.814457 ACTCTAGCAAGACTCGCCTG 59.186 55.000 0.00 0.00 0.00 4.85
634 637 0.102120 CTCTAGCAAGACTCGCCTGG 59.898 60.000 0.00 0.00 0.00 4.45
635 638 0.612174 TCTAGCAAGACTCGCCTGGT 60.612 55.000 0.00 0.00 0.00 4.00
636 639 1.103803 CTAGCAAGACTCGCCTGGTA 58.896 55.000 0.00 0.00 0.00 3.25
637 640 1.683917 CTAGCAAGACTCGCCTGGTAT 59.316 52.381 0.00 0.00 0.00 2.73
638 641 0.905357 AGCAAGACTCGCCTGGTATT 59.095 50.000 0.00 0.00 0.00 1.89
639 642 1.134670 AGCAAGACTCGCCTGGTATTC 60.135 52.381 0.00 0.00 0.00 1.75
640 643 1.941325 CAAGACTCGCCTGGTATTCC 58.059 55.000 0.00 0.00 0.00 3.01
641 644 0.460311 AAGACTCGCCTGGTATTCCG 59.540 55.000 0.00 0.00 36.30 4.30
642 645 1.591863 GACTCGCCTGGTATTCCGC 60.592 63.158 0.00 0.00 36.30 5.54
643 646 2.280186 CTCGCCTGGTATTCCGCC 60.280 66.667 0.00 0.00 36.30 6.13
644 647 3.078196 TCGCCTGGTATTCCGCCA 61.078 61.111 0.00 0.00 36.30 5.69
645 648 2.124901 CGCCTGGTATTCCGCCAA 60.125 61.111 0.00 0.00 35.32 4.52
646 649 1.747367 CGCCTGGTATTCCGCCAAA 60.747 57.895 0.00 0.00 35.32 3.28
647 650 1.309499 CGCCTGGTATTCCGCCAAAA 61.309 55.000 0.00 0.00 35.32 2.44
648 651 0.892063 GCCTGGTATTCCGCCAAAAA 59.108 50.000 0.00 0.00 35.32 1.94
716 719 0.962356 AATTTGCACCTCCAGGCTCG 60.962 55.000 0.00 0.00 39.32 5.03
741 744 4.685628 GGAACCATTACTTTTGTGCACATG 59.314 41.667 22.39 13.72 0.00 3.21
775 778 6.004574 GCTAGCTAACCCTATGGCTAAAATT 58.995 40.000 7.70 0.00 36.94 1.82
778 781 5.134509 AGCTAACCCTATGGCTAAAATTCCT 59.865 40.000 0.00 0.00 32.94 3.36
782 785 4.145052 CCCTATGGCTAAAATTCCTCACC 58.855 47.826 0.00 0.00 0.00 4.02
783 786 4.141158 CCCTATGGCTAAAATTCCTCACCT 60.141 45.833 0.00 0.00 0.00 4.00
803 806 4.542525 ACCTTAGGGTGGGTAAATCATCAA 59.457 41.667 2.32 0.00 45.43 2.57
804 807 4.887655 CCTTAGGGTGGGTAAATCATCAAC 59.112 45.833 0.00 0.00 0.00 3.18
806 809 2.926329 AGGGTGGGTAAATCATCAACCT 59.074 45.455 0.00 0.00 42.01 3.50
828 831 7.002879 ACCTATACCATAACACGTGAGAGTAT 58.997 38.462 25.01 20.36 33.52 2.12
829 832 7.504911 ACCTATACCATAACACGTGAGAGTATT 59.495 37.037 25.01 7.35 33.52 1.89
830 833 8.358148 CCTATACCATAACACGTGAGAGTATTT 58.642 37.037 25.01 6.55 33.52 1.40
831 834 9.745880 CTATACCATAACACGTGAGAGTATTTT 57.254 33.333 25.01 5.74 33.52 1.82
846 849 8.677300 TGAGAGTATTTTAAAATCCATGTGCTC 58.323 33.333 16.56 10.90 0.00 4.26
853 856 2.768253 AATCCATGTGCTCAACTCGA 57.232 45.000 0.00 0.00 0.00 4.04
865 868 2.131972 TCAACTCGATCGTGTGGTTTG 58.868 47.619 22.14 16.26 0.00 2.93
868 871 0.708370 CTCGATCGTGTGGTTTGTCG 59.292 55.000 15.94 0.00 0.00 4.35
878 881 0.756294 TGGTTTGTCGAAGAGGAGCA 59.244 50.000 0.00 0.00 36.95 4.26
898 901 2.791347 TAGACGTCTGAAGCTCTCCT 57.209 50.000 28.12 0.00 0.00 3.69
906 909 4.270008 GTCTGAAGCTCTCCTACTTCTCT 58.730 47.826 4.57 0.00 42.27 3.10
932 935 4.143333 CGTCGCCGATTCCCACCT 62.143 66.667 0.00 0.00 35.63 4.00
937 949 1.520787 GCCGATTCCCACCTACGTG 60.521 63.158 0.00 0.00 39.91 4.49
946 958 4.822685 TCCCACCTACGTGCTATTTAAA 57.177 40.909 0.00 0.00 38.79 1.52
951 963 3.520721 ACCTACGTGCTATTTAAACCCCT 59.479 43.478 0.00 0.00 0.00 4.79
952 964 3.875134 CCTACGTGCTATTTAAACCCCTG 59.125 47.826 0.00 0.00 0.00 4.45
972 987 1.682849 CCAGATCGTGGGGTTTCCA 59.317 57.895 3.90 0.00 43.63 3.53
983 998 0.036875 GGGTTTCCACTCCACTCTGG 59.963 60.000 0.00 0.00 39.43 3.86
985 1000 0.606673 GTTTCCACTCCACTCTGGGC 60.607 60.000 0.00 0.00 38.32 5.36
994 1009 2.121538 CACTCTGGGCCTCGATCGA 61.122 63.158 18.32 18.32 0.00 3.59
995 1010 1.152652 ACTCTGGGCCTCGATCGAT 60.153 57.895 19.78 0.00 0.00 3.59
996 1011 1.175983 ACTCTGGGCCTCGATCGATC 61.176 60.000 19.78 15.68 0.00 3.69
1006 1021 2.145225 CGATCGATCGCAATGGACC 58.855 57.895 32.34 0.00 43.84 4.46
1007 1022 1.284982 CGATCGATCGCAATGGACCC 61.285 60.000 32.34 0.00 43.84 4.46
1008 1023 0.951040 GATCGATCGCAATGGACCCC 60.951 60.000 11.09 0.00 0.00 4.95
1009 1024 2.715532 ATCGATCGCAATGGACCCCG 62.716 60.000 11.09 0.00 0.00 5.73
1010 1025 3.279875 GATCGCAATGGACCCCGC 61.280 66.667 0.00 0.00 0.00 6.13
1011 1026 4.875713 ATCGCAATGGACCCCGCC 62.876 66.667 0.00 0.00 0.00 6.13
1076 1091 4.760047 CTTAGGCCGCGTGGTGCT 62.760 66.667 17.91 0.00 43.27 4.40
1255 1270 3.005539 GCTGCCAGGTCCCTCTCA 61.006 66.667 0.00 0.00 0.00 3.27
1256 1271 2.985456 CTGCCAGGTCCCTCTCAC 59.015 66.667 0.00 0.00 0.00 3.51
1259 1314 4.135153 CCAGGTCCCTCTCACGCG 62.135 72.222 3.53 3.53 0.00 6.01
1278 1333 1.871039 CGTTCGTTTGTTGGTCTGGAT 59.129 47.619 0.00 0.00 0.00 3.41
1279 1334 2.349438 CGTTCGTTTGTTGGTCTGGATG 60.349 50.000 0.00 0.00 0.00 3.51
1280 1335 1.890876 TCGTTTGTTGGTCTGGATGG 58.109 50.000 0.00 0.00 0.00 3.51
1281 1336 1.142060 TCGTTTGTTGGTCTGGATGGT 59.858 47.619 0.00 0.00 0.00 3.55
1287 1343 1.191489 TTGGTCTGGATGGTGCTCGA 61.191 55.000 0.00 0.00 0.00 4.04
1295 1351 4.816385 TCTGGATGGTGCTCGATTTATTTC 59.184 41.667 0.00 0.00 0.00 2.17
1302 1358 3.128589 GTGCTCGATTTATTTCCTGGCAA 59.871 43.478 0.00 0.00 0.00 4.52
1305 1361 4.800471 GCTCGATTTATTTCCTGGCAAAAG 59.200 41.667 0.00 0.00 0.00 2.27
1310 1366 6.183360 CGATTTATTTCCTGGCAAAAGCTTTC 60.183 38.462 13.10 0.20 0.00 2.62
1312 1368 1.786937 TTCCTGGCAAAAGCTTTCCA 58.213 45.000 13.10 15.12 0.00 3.53
1318 1374 2.898612 TGGCAAAAGCTTTCCATCATCA 59.101 40.909 13.10 2.17 0.00 3.07
1321 1377 3.676646 GCAAAAGCTTTCCATCATCACAC 59.323 43.478 13.10 0.00 0.00 3.82
1322 1378 4.560108 GCAAAAGCTTTCCATCATCACACT 60.560 41.667 13.10 0.00 0.00 3.55
1325 1381 6.899393 AAAGCTTTCCATCATCACACTAAA 57.101 33.333 5.69 0.00 0.00 1.85
1334 1390 9.958180 TTCCATCATCACACTAAATAAGAAGAA 57.042 29.630 0.00 0.00 0.00 2.52
1379 1435 8.785329 TGCAAGAAACTTTTAAAAATCCAACT 57.215 26.923 1.66 0.00 0.00 3.16
1380 1436 9.225436 TGCAAGAAACTTTTAAAAATCCAACTT 57.775 25.926 1.66 1.66 0.00 2.66
1417 1473 9.594478 AACCTTTGTAATTCGAAATTTTGAACT 57.406 25.926 20.68 14.03 33.63 3.01
1427 1483 7.826260 TCGAAATTTTGAACTTTTGAAGCTT 57.174 28.000 5.60 0.00 0.00 3.74
1428 1484 8.250538 TCGAAATTTTGAACTTTTGAAGCTTT 57.749 26.923 5.60 0.00 0.00 3.51
1429 1485 9.360093 TCGAAATTTTGAACTTTTGAAGCTTTA 57.640 25.926 5.60 0.00 0.00 1.85
1430 1486 9.623687 CGAAATTTTGAACTTTTGAAGCTTTAG 57.376 29.630 0.00 0.00 0.00 1.85
1467 1523 5.535333 AGTGGAAAGTTGATGCATGAAAAG 58.465 37.500 2.46 0.00 0.00 2.27
1470 1526 6.479660 GTGGAAAGTTGATGCATGAAAAGAAA 59.520 34.615 2.46 0.00 0.00 2.52
1471 1527 6.479660 TGGAAAGTTGATGCATGAAAAGAAAC 59.520 34.615 2.46 0.00 0.00 2.78
1472 1528 6.703165 GGAAAGTTGATGCATGAAAAGAAACT 59.297 34.615 2.46 0.00 0.00 2.66
1473 1529 7.306983 GGAAAGTTGATGCATGAAAAGAAACTG 60.307 37.037 2.46 0.00 0.00 3.16
1474 1530 6.395426 AGTTGATGCATGAAAAGAAACTGA 57.605 33.333 2.46 0.00 0.00 3.41
1475 1531 6.808829 AGTTGATGCATGAAAAGAAACTGAA 58.191 32.000 2.46 0.00 0.00 3.02
1479 1535 8.665643 TGATGCATGAAAAGAAACTGAAAAAT 57.334 26.923 2.46 0.00 0.00 1.82
1480 1536 9.111613 TGATGCATGAAAAGAAACTGAAAAATT 57.888 25.926 2.46 0.00 0.00 1.82
1483 1539 7.012232 TGCATGAAAAGAAACTGAAAAATTCCC 59.988 33.333 0.00 0.00 0.00 3.97
1484 1540 7.520453 GCATGAAAAGAAACTGAAAAATTCCCC 60.520 37.037 0.00 0.00 0.00 4.81
1485 1541 7.194112 TGAAAAGAAACTGAAAAATTCCCCT 57.806 32.000 0.00 0.00 0.00 4.79
1495 1620 0.178801 AAATTCCCCTCCCCTCCACT 60.179 55.000 0.00 0.00 0.00 4.00
1496 1621 0.921256 AATTCCCCTCCCCTCCACTG 60.921 60.000 0.00 0.00 0.00 3.66
1503 1628 4.415150 CCCCTCCACTGCACGCAT 62.415 66.667 0.00 0.00 0.00 4.73
1505 1630 3.190849 CCTCCACTGCACGCATCG 61.191 66.667 0.00 0.00 0.00 3.84
1516 1641 4.552365 CGCATCGCCACATCCCCT 62.552 66.667 0.00 0.00 0.00 4.79
1529 1655 1.347707 CATCCCCTATGCGTGTATGGT 59.652 52.381 0.00 0.00 0.00 3.55
1535 1661 0.108567 TATGCGTGTATGGTGCGTGT 60.109 50.000 0.00 0.00 0.00 4.49
1537 1663 3.022401 GCGTGTATGGTGCGTGTGG 62.022 63.158 0.00 0.00 0.00 4.17
1540 1666 1.006832 GTGTATGGTGCGTGTGGATC 58.993 55.000 0.00 0.00 0.00 3.36
1541 1667 0.610687 TGTATGGTGCGTGTGGATCA 59.389 50.000 0.00 0.00 0.00 2.92
1543 1669 1.599071 GTATGGTGCGTGTGGATCATG 59.401 52.381 0.00 0.00 37.85 3.07
1546 1672 0.108186 GGTGCGTGTGGATCATGAGA 60.108 55.000 0.09 0.00 35.23 3.27
1549 1675 1.009829 GCGTGTGGATCATGAGAACC 58.990 55.000 0.09 5.53 37.23 3.62
1550 1676 1.656652 CGTGTGGATCATGAGAACCC 58.343 55.000 0.09 0.51 35.94 4.11
1551 1677 1.656652 GTGTGGATCATGAGAACCCG 58.343 55.000 0.09 0.00 35.94 5.28
1558 2840 0.539986 TCATGAGAACCCGTTAGCCC 59.460 55.000 0.00 0.00 0.00 5.19
1565 2847 1.795951 AACCCGTTAGCCCCATGGTT 61.796 55.000 11.73 0.00 0.00 3.67
1566 2848 1.000145 CCCGTTAGCCCCATGGTTT 60.000 57.895 11.73 0.00 0.00 3.27
1572 2854 1.869824 TAGCCCCATGGTTTCCCACC 61.870 60.000 11.73 0.00 45.65 4.61
1576 2858 3.068064 CATGGTTTCCCACCCGCC 61.068 66.667 0.00 0.00 46.68 6.13
1589 2871 3.925090 CCGCCCCGTACTCCCATC 61.925 72.222 0.00 0.00 0.00 3.51
1590 2872 3.151710 CGCCCCGTACTCCCATCA 61.152 66.667 0.00 0.00 0.00 3.07
1591 2873 2.504519 GCCCCGTACTCCCATCAC 59.495 66.667 0.00 0.00 0.00 3.06
1592 2874 2.363975 GCCCCGTACTCCCATCACA 61.364 63.158 0.00 0.00 0.00 3.58
1593 2875 1.823295 CCCCGTACTCCCATCACAG 59.177 63.158 0.00 0.00 0.00 3.66
1594 2876 0.976073 CCCCGTACTCCCATCACAGT 60.976 60.000 0.00 0.00 0.00 3.55
1595 2877 0.460311 CCCGTACTCCCATCACAGTC 59.540 60.000 0.00 0.00 0.00 3.51
1596 2878 0.100682 CCGTACTCCCATCACAGTCG 59.899 60.000 0.00 0.00 0.00 4.18
1597 2879 0.525668 CGTACTCCCATCACAGTCGC 60.526 60.000 0.00 0.00 0.00 5.19
1598 2880 0.530744 GTACTCCCATCACAGTCGCA 59.469 55.000 0.00 0.00 0.00 5.10
1599 2881 1.137086 GTACTCCCATCACAGTCGCAT 59.863 52.381 0.00 0.00 0.00 4.73
1600 2882 0.107993 ACTCCCATCACAGTCGCATG 60.108 55.000 0.00 0.00 0.00 4.06
1601 2883 0.107993 CTCCCATCACAGTCGCATGT 60.108 55.000 0.00 0.00 0.00 3.21
1607 2889 2.615774 CACAGTCGCATGTGTTGGA 58.384 52.632 6.09 0.00 44.49 3.53
1667 2950 8.789825 TTTTTGCATGCATCCATTTAAGTAAT 57.210 26.923 23.37 0.00 0.00 1.89
1668 2951 8.789825 TTTTGCATGCATCCATTTAAGTAATT 57.210 26.923 23.37 0.00 0.00 1.40
1669 2952 8.789825 TTTGCATGCATCCATTTAAGTAATTT 57.210 26.923 23.37 0.00 0.00 1.82
1710 2993 5.587388 AGAATGCATGGGTAGTTGAATTG 57.413 39.130 0.00 0.00 0.00 2.32
1711 2994 5.018809 AGAATGCATGGGTAGTTGAATTGT 58.981 37.500 0.00 0.00 0.00 2.71
1713 2996 4.782019 TGCATGGGTAGTTGAATTGTTC 57.218 40.909 0.00 0.00 0.00 3.18
1714 2997 3.190327 TGCATGGGTAGTTGAATTGTTCG 59.810 43.478 0.00 0.00 0.00 3.95
1724 3008 4.578928 AGTTGAATTGTTCGGTTAAGCACT 59.421 37.500 5.38 0.00 0.00 4.40
1750 3034 7.820044 TCAACAAGTTCCATTTGTTTACAAC 57.180 32.000 0.96 0.00 44.04 3.32
1751 3035 7.378966 TCAACAAGTTCCATTTGTTTACAACA 58.621 30.769 0.96 0.00 44.04 3.33
1757 3041 7.257722 AGTTCCATTTGTTTACAACAGTCTTG 58.742 34.615 0.00 0.00 43.27 3.02
1763 3047 6.576662 TTGTTTACAACAGTCTTGTTTCCA 57.423 33.333 0.00 0.00 45.01 3.53
1774 3058 5.471456 CAGTCTTGTTTCCAGCATTACTTCT 59.529 40.000 0.00 0.00 0.00 2.85
1779 3063 6.317789 TGTTTCCAGCATTACTTCTTTCAG 57.682 37.500 0.00 0.00 0.00 3.02
1785 3069 6.772716 TCCAGCATTACTTCTTTCAGAAACTT 59.227 34.615 0.00 0.00 33.19 2.66
1797 3085 8.149973 TCTTTCAGAAACTTGGTTGTATACAC 57.850 34.615 4.68 1.11 0.00 2.90
1811 3099 7.348801 TGGTTGTATACACCATATAGTTCCCTT 59.651 37.037 17.86 0.00 0.00 3.95
1827 3115 2.707257 TCCCTTAACCGACTGTTCCTTT 59.293 45.455 0.00 0.00 38.42 3.11
1849 3137 9.216117 CCTTTTGCACTATTGTAGTTAGTTAGT 57.784 33.333 0.00 0.00 36.76 2.24
1885 3173 2.678471 ATTGCATGGGCTTACTTTGC 57.322 45.000 0.00 0.00 41.91 3.68
1889 3177 4.413928 TGGGCTTACTTTGCGCAT 57.586 50.000 12.75 0.00 45.93 4.73
1892 3180 1.470890 TGGGCTTACTTTGCGCATTAC 59.529 47.619 12.75 0.00 45.93 1.89
1907 3195 7.032377 TGCGCATTACAATTTGATAATACCA 57.968 32.000 5.66 0.91 0.00 3.25
1934 3226 4.458989 TCACCTTCTTAACATGTGGATTGC 59.541 41.667 0.00 0.00 0.00 3.56
2208 3501 2.119495 TCTTGATGGACTTAGGGAGGC 58.881 52.381 0.00 0.00 0.00 4.70
2273 3566 5.495926 TGGGCCATGTTATTCAAACAAAT 57.504 34.783 0.00 0.00 33.42 2.32
2296 3589 6.627087 TTTATCAGGAATGGACTCAGAGTT 57.373 37.500 4.05 0.00 0.00 3.01
2324 3617 1.142060 TCCGACACATGGACACCTTTT 59.858 47.619 0.00 0.00 0.00 2.27
2344 3637 6.209788 CCTTTTGTGCCAAACTTAATACCCTA 59.790 38.462 0.52 0.00 0.00 3.53
2420 3713 6.928348 TCAAAGAGGAGGTTGATAAGTACA 57.072 37.500 0.00 0.00 0.00 2.90
2431 3724 6.549736 AGGTTGATAAGTACAAAAGGTTTGCT 59.450 34.615 0.00 0.00 0.00 3.91
2482 3775 3.127376 CCGTGCATTTCATGAATGAGTCA 59.873 43.478 9.40 0.00 46.59 3.41
2495 3788 4.698780 TGAATGAGTCAATCTTGCAGAAGG 59.301 41.667 9.55 0.00 31.51 3.46
2524 3817 2.341452 GGTTGAAGGTGGTCAAGCC 58.659 57.895 5.96 0.01 45.84 4.35
2593 3886 5.280499 TCAAGTCCTTCATCTGGAGGAATA 58.720 41.667 8.85 0.00 33.78 1.75
2618 3911 0.034186 TGGCCTTGGTATTGCTCCAG 60.034 55.000 3.32 0.00 36.28 3.86
2678 3972 7.521585 CGGTTGCCTCTAAACTTCTTAACATTT 60.522 37.037 0.00 0.00 0.00 2.32
2902 4198 5.657474 CTCAAATACTGCTGCCAAATCAAT 58.343 37.500 0.00 0.00 0.00 2.57
2905 4201 1.636148 ACTGCTGCCAAATCAATGGT 58.364 45.000 0.00 0.00 42.75 3.55
2943 4239 3.624900 TGACGAAACTTGACGTACTGAG 58.375 45.455 0.00 0.00 42.74 3.35
2962 4258 5.710099 ACTGAGCGGATTGAAGGAAATTAAA 59.290 36.000 0.00 0.00 0.00 1.52
3016 4312 2.217112 GATCGAATCGTTCCCAGCG 58.783 57.895 1.52 0.00 0.00 5.18
3039 4335 3.690460 ACCTCGATCTTTTGGAGCAAAT 58.310 40.909 0.00 0.00 33.19 2.32
3076 4373 4.707210 AAAAATTGTCATGTTTTCGCCG 57.293 36.364 0.00 0.00 0.00 6.46
3099 4409 7.254185 GCCGAGTCATATTTCGTTTGTGTAATA 60.254 37.037 0.00 0.00 35.14 0.98
3107 4417 9.820229 ATATTTCGTTTGTGTAATATAATGCGG 57.180 29.630 0.00 0.00 0.00 5.69
3118 4428 1.392589 ATAATGCGGTCTTGCTTGGG 58.607 50.000 0.00 0.00 35.36 4.12
3119 4429 1.312371 TAATGCGGTCTTGCTTGGGC 61.312 55.000 0.00 0.00 39.26 5.36
3123 4433 1.377725 CGGTCTTGCTTGGGCTGAT 60.378 57.895 0.00 0.00 39.59 2.90
3134 4444 3.242870 GCTTGGGCTGATGATAAAACTCG 60.243 47.826 0.00 0.00 35.22 4.18
3139 4449 4.130118 GGCTGATGATAAAACTCGTGGAT 58.870 43.478 0.00 0.00 0.00 3.41
3221 4531 8.956446 TGATACAAGACTATAATGATCTCCCA 57.044 34.615 0.00 0.00 0.00 4.37
3222 4532 9.379770 TGATACAAGACTATAATGATCTCCCAA 57.620 33.333 0.00 0.00 0.00 4.12
3265 4575 5.209659 GGAGAGGATAGAGGAGTTGGTTAA 58.790 45.833 0.00 0.00 0.00 2.01
3395 4705 6.428159 CCAATGTGCTCTTTACTCTACTTGTT 59.572 38.462 0.00 0.00 0.00 2.83
3396 4706 7.041098 CCAATGTGCTCTTTACTCTACTTGTTT 60.041 37.037 0.00 0.00 0.00 2.83
3398 4708 6.346096 TGTGCTCTTTACTCTACTTGTTTGT 58.654 36.000 0.00 0.00 0.00 2.83
3399 4709 7.494211 TGTGCTCTTTACTCTACTTGTTTGTA 58.506 34.615 0.00 0.00 0.00 2.41
3400 4710 7.982919 TGTGCTCTTTACTCTACTTGTTTGTAA 59.017 33.333 0.00 0.00 0.00 2.41
3401 4711 8.488764 GTGCTCTTTACTCTACTTGTTTGTAAG 58.511 37.037 0.00 0.00 0.00 2.34
3402 4712 7.656137 TGCTCTTTACTCTACTTGTTTGTAAGG 59.344 37.037 0.00 0.00 31.94 2.69
3403 4713 7.656542 GCTCTTTACTCTACTTGTTTGTAAGGT 59.343 37.037 0.00 0.00 31.94 3.50
3405 4715 9.971922 TCTTTACTCTACTTGTTTGTAAGGTAC 57.028 33.333 0.00 0.00 31.94 3.34
3410 4720 9.531158 ACTCTACTTGTTTGTAAGGTACTATCT 57.469 33.333 0.00 0.00 38.49 1.98
3412 4722 9.524496 TCTACTTGTTTGTAAGGTACTATCTCA 57.476 33.333 0.00 0.00 38.49 3.27
3413 4723 9.790389 CTACTTGTTTGTAAGGTACTATCTCAG 57.210 37.037 0.00 0.00 38.49 3.35
3414 4724 8.191534 ACTTGTTTGTAAGGTACTATCTCAGT 57.808 34.615 0.00 0.00 38.49 3.41
3415 4725 9.305555 ACTTGTTTGTAAGGTACTATCTCAGTA 57.694 33.333 0.00 0.00 38.49 2.74
3441 4751 9.591792 ACCTAATATAAGACGTTTTTACAGTCC 57.408 33.333 0.00 0.00 35.65 3.85
3442 4752 9.590451 CCTAATATAAGACGTTTTTACAGTCCA 57.410 33.333 0.00 0.00 35.65 4.02
3447 4757 6.687081 AAGACGTTTTTACAGTCCATTTGA 57.313 33.333 0.00 0.00 35.65 2.69
3448 4758 6.687081 AGACGTTTTTACAGTCCATTTGAA 57.313 33.333 0.00 0.00 35.65 2.69
3449 4759 6.492254 AGACGTTTTTACAGTCCATTTGAAC 58.508 36.000 0.00 0.00 35.65 3.18
3450 4760 6.317893 AGACGTTTTTACAGTCCATTTGAACT 59.682 34.615 0.00 0.00 35.65 3.01
3451 4761 6.262601 ACGTTTTTACAGTCCATTTGAACTG 58.737 36.000 0.00 0.00 36.39 3.16
3452 4762 5.173131 CGTTTTTACAGTCCATTTGAACTGC 59.827 40.000 0.00 0.00 33.85 4.40
3453 4763 5.843673 TTTTACAGTCCATTTGAACTGCA 57.156 34.783 0.00 0.00 33.85 4.41
3454 4764 5.843673 TTTACAGTCCATTTGAACTGCAA 57.156 34.783 0.00 0.00 33.85 4.08
3465 4775 4.695217 TTGAACTGCAAAAACGTCTTCT 57.305 36.364 0.00 0.00 32.46 2.85
3466 4776 4.695217 TGAACTGCAAAAACGTCTTCTT 57.305 36.364 0.00 0.00 0.00 2.52
3467 4777 5.054390 TGAACTGCAAAAACGTCTTCTTT 57.946 34.783 0.00 0.00 0.00 2.52
3468 4778 6.184580 TGAACTGCAAAAACGTCTTCTTTA 57.815 33.333 0.00 0.00 0.00 1.85
3469 4779 6.791303 TGAACTGCAAAAACGTCTTCTTTAT 58.209 32.000 0.00 0.00 0.00 1.40
3470 4780 7.921787 TGAACTGCAAAAACGTCTTCTTTATA 58.078 30.769 0.00 0.00 0.00 0.98
3471 4781 8.564574 TGAACTGCAAAAACGTCTTCTTTATAT 58.435 29.630 0.00 0.00 0.00 0.86
3472 4782 9.394477 GAACTGCAAAAACGTCTTCTTTATATT 57.606 29.630 0.00 0.00 0.00 1.28
3473 4783 9.744468 AACTGCAAAAACGTCTTCTTTATATTT 57.256 25.926 0.00 0.00 0.00 1.40
3474 4784 9.744468 ACTGCAAAAACGTCTTCTTTATATTTT 57.256 25.926 0.00 0.00 0.00 1.82
3475 4785 9.993881 CTGCAAAAACGTCTTCTTTATATTTTG 57.006 29.630 9.32 9.32 38.73 2.44
3476 4786 8.973378 TGCAAAAACGTCTTCTTTATATTTTGG 58.027 29.630 13.51 0.00 37.14 3.28
3477 4787 8.974408 GCAAAAACGTCTTCTTTATATTTTGGT 58.026 29.630 13.51 0.00 37.14 3.67
3480 4790 9.815936 AAAACGTCTTCTTTATATTTTGGTACG 57.184 29.630 0.00 0.00 0.00 3.67
3481 4791 7.529880 ACGTCTTCTTTATATTTTGGTACGG 57.470 36.000 0.00 0.00 0.00 4.02
3482 4792 7.322664 ACGTCTTCTTTATATTTTGGTACGGA 58.677 34.615 0.00 0.00 0.00 4.69
3483 4793 7.490402 ACGTCTTCTTTATATTTTGGTACGGAG 59.510 37.037 0.00 0.00 0.00 4.63
3484 4794 7.042925 CGTCTTCTTTATATTTTGGTACGGAGG 60.043 40.741 0.00 0.00 0.00 4.30
3485 4795 7.226128 GTCTTCTTTATATTTTGGTACGGAGGG 59.774 40.741 0.00 0.00 0.00 4.30
3486 4796 6.811634 TCTTTATATTTTGGTACGGAGGGA 57.188 37.500 0.00 0.00 0.00 4.20
3487 4797 6.823497 TCTTTATATTTTGGTACGGAGGGAG 58.177 40.000 0.00 0.00 0.00 4.30
3488 4798 6.612456 TCTTTATATTTTGGTACGGAGGGAGA 59.388 38.462 0.00 0.00 0.00 3.71
3493 4803 3.393426 TTGGTACGGAGGGAGAACTAT 57.607 47.619 0.00 0.00 0.00 2.12
3502 4812 6.178324 ACGGAGGGAGAACTATTTTAAAAGG 58.822 40.000 6.79 4.73 0.00 3.11
3574 4884 3.990245 AGTAGGGATGGCTATGGGAATTT 59.010 43.478 0.00 0.00 0.00 1.82
3578 4888 4.078395 AGGGATGGCTATGGGAATTTCTTT 60.078 41.667 0.00 0.00 0.00 2.52
3581 4891 2.426738 TGGCTATGGGAATTTCTTTGCG 59.573 45.455 0.00 0.00 0.00 4.85
3596 4906 2.672188 TTGCGTACAATGTTTCACGG 57.328 45.000 8.90 0.00 35.04 4.94
3605 4915 0.539986 ATGTTTCACGGCCGACCTAT 59.460 50.000 35.90 14.85 0.00 2.57
3606 4916 0.390603 TGTTTCACGGCCGACCTATG 60.391 55.000 35.90 19.97 0.00 2.23
3627 4937 2.224305 GCACAACACTCTTGTCCTACCT 60.224 50.000 0.00 0.00 33.55 3.08
3637 4947 5.308237 ACTCTTGTCCTACCTCTCATTGTTT 59.692 40.000 0.00 0.00 0.00 2.83
3645 4955 6.439375 TCCTACCTCTCATTGTTTAAGTAGCA 59.561 38.462 0.00 0.00 0.00 3.49
3660 4970 5.587388 AAGTAGCAATTTGATCCATGGTG 57.413 39.130 12.58 1.36 0.00 4.17
3666 4976 4.869861 GCAATTTGATCCATGGTGGTTAAC 59.130 41.667 12.58 0.00 39.03 2.01
3671 4981 5.353394 TGATCCATGGTGGTTAACTAGTC 57.647 43.478 12.58 0.00 39.03 2.59
3674 4984 3.446161 TCCATGGTGGTTAACTAGTCTCG 59.554 47.826 12.58 0.00 39.03 4.04
3690 5002 4.428209 AGTCTCGAACAAGCATCATACAG 58.572 43.478 0.00 0.00 0.00 2.74
3700 5012 5.643348 ACAAGCATCATACAGAAATTCGTCA 59.357 36.000 0.00 0.00 0.00 4.35
3702 5014 5.664457 AGCATCATACAGAAATTCGTCAGA 58.336 37.500 0.00 0.00 0.00 3.27
3708 5020 7.996385 TCATACAGAAATTCGTCAGACATCTA 58.004 34.615 0.41 0.00 0.00 1.98
3743 5055 7.416964 AACTACTATGAGTTCAGAAGCATCT 57.583 36.000 2.45 0.00 34.48 2.90
3778 5090 9.819267 ACACTACTACTTCTAATAAAGCCATTC 57.181 33.333 0.00 0.00 0.00 2.67
3780 5092 8.142551 ACTACTACTTCTAATAAAGCCATTCGG 58.857 37.037 0.00 0.00 0.00 4.30
3782 5094 6.761714 ACTACTTCTAATAAAGCCATTCGGTG 59.238 38.462 0.00 0.00 33.28 4.94
3783 5095 4.335594 ACTTCTAATAAAGCCATTCGGTGC 59.664 41.667 0.00 0.00 33.28 5.01
3784 5096 3.879998 TCTAATAAAGCCATTCGGTGCA 58.120 40.909 0.00 0.00 33.28 4.57
3785 5097 4.460263 TCTAATAAAGCCATTCGGTGCAT 58.540 39.130 0.00 0.00 33.28 3.96
3786 5098 3.441496 AATAAAGCCATTCGGTGCATG 57.559 42.857 0.00 0.00 33.28 4.06
3787 5099 2.121291 TAAAGCCATTCGGTGCATGA 57.879 45.000 0.00 0.00 33.28 3.07
3788 5100 1.255882 AAAGCCATTCGGTGCATGAA 58.744 45.000 0.00 6.78 33.28 2.57
3789 5101 0.813184 AAGCCATTCGGTGCATGAAG 59.187 50.000 0.00 0.17 33.28 3.02
3790 5102 0.322816 AGCCATTCGGTGCATGAAGT 60.323 50.000 0.00 0.00 33.28 3.01
3791 5103 0.527565 GCCATTCGGTGCATGAAGTT 59.472 50.000 0.00 0.00 33.28 2.66
3792 5104 1.468054 GCCATTCGGTGCATGAAGTTC 60.468 52.381 0.00 0.00 33.28 3.01
3806 5118 7.478667 GTGCATGAAGTTCGTAAAACTTGATAG 59.521 37.037 7.83 2.83 40.27 2.08
3824 5136 9.642343 ACTTGATAGTATGGTAGTAGATGACAA 57.358 33.333 0.00 0.00 31.21 3.18
3831 5143 8.603304 AGTATGGTAGTAGATGACAAGGTTTTT 58.397 33.333 0.00 0.00 0.00 1.94
3833 5145 6.001460 TGGTAGTAGATGACAAGGTTTTTGG 58.999 40.000 0.00 0.00 0.00 3.28
3838 5150 3.683365 ATGACAAGGTTTTTGGCATCC 57.317 42.857 2.48 0.00 44.32 3.51
3840 5152 3.037549 TGACAAGGTTTTTGGCATCCTT 58.962 40.909 7.59 7.59 40.38 3.36
3851 5163 7.375053 GTTTTTGGCATCCTTAATGAAGTACA 58.625 34.615 0.00 0.00 37.59 2.90
3852 5164 6.757897 TTTGGCATCCTTAATGAAGTACAG 57.242 37.500 0.00 0.00 37.59 2.74
3863 5175 2.790433 TGAAGTACAGCCCCAACAATC 58.210 47.619 0.00 0.00 0.00 2.67
3866 5178 0.035820 GTACAGCCCCAACAATCCGA 60.036 55.000 0.00 0.00 0.00 4.55
3907 5219 2.781681 CCAGGACCTGGTCGTAAAAT 57.218 50.000 29.93 0.26 45.82 1.82
3910 5222 4.189231 CCAGGACCTGGTCGTAAAATAAG 58.811 47.826 29.93 7.60 45.82 1.73
3911 5223 4.081309 CCAGGACCTGGTCGTAAAATAAGA 60.081 45.833 29.93 0.00 45.82 2.10
3912 5224 5.396436 CCAGGACCTGGTCGTAAAATAAGAT 60.396 44.000 29.93 0.00 45.82 2.40
3913 5225 6.183360 CCAGGACCTGGTCGTAAAATAAGATA 60.183 42.308 29.93 0.00 45.82 1.98
3914 5226 6.924060 CAGGACCTGGTCGTAAAATAAGATAG 59.076 42.308 20.54 1.80 32.65 2.08
3915 5227 6.837568 AGGACCTGGTCGTAAAATAAGATAGA 59.162 38.462 19.71 0.00 32.65 1.98
3916 5228 7.509659 AGGACCTGGTCGTAAAATAAGATAGAT 59.490 37.037 19.71 0.00 32.65 1.98
3917 5229 8.800332 GGACCTGGTCGTAAAATAAGATAGATA 58.200 37.037 19.98 0.00 32.65 1.98
3931 5243 6.452494 AAGATAGATATATGACGTTCGGGG 57.548 41.667 0.00 0.00 0.00 5.73
3932 5244 5.752650 AGATAGATATATGACGTTCGGGGA 58.247 41.667 0.00 0.00 0.00 4.81
3933 5245 6.185511 AGATAGATATATGACGTTCGGGGAA 58.814 40.000 0.00 0.00 0.00 3.97
3934 5246 6.662234 AGATAGATATATGACGTTCGGGGAAA 59.338 38.462 0.00 0.00 0.00 3.13
3935 5247 5.540400 AGATATATGACGTTCGGGGAAAA 57.460 39.130 0.00 0.00 0.00 2.29
3936 5248 5.920903 AGATATATGACGTTCGGGGAAAAA 58.079 37.500 0.00 0.00 0.00 1.94
3937 5249 5.756833 AGATATATGACGTTCGGGGAAAAAC 59.243 40.000 0.00 0.00 0.00 2.43
3938 5250 1.970092 ATGACGTTCGGGGAAAAACA 58.030 45.000 0.00 0.00 0.00 2.83
3939 5251 1.970092 TGACGTTCGGGGAAAAACAT 58.030 45.000 0.00 0.00 0.00 2.71
3940 5252 1.874872 TGACGTTCGGGGAAAAACATC 59.125 47.619 0.00 0.00 0.00 3.06
3941 5253 1.874872 GACGTTCGGGGAAAAACATCA 59.125 47.619 0.00 0.00 0.00 3.07
3942 5254 2.291190 GACGTTCGGGGAAAAACATCAA 59.709 45.455 0.00 0.00 0.00 2.57
3943 5255 2.688958 ACGTTCGGGGAAAAACATCAAA 59.311 40.909 0.00 0.00 0.00 2.69
3944 5256 3.319689 ACGTTCGGGGAAAAACATCAAAT 59.680 39.130 0.00 0.00 0.00 2.32
3945 5257 4.519730 ACGTTCGGGGAAAAACATCAAATA 59.480 37.500 0.00 0.00 0.00 1.40
3946 5258 5.009811 ACGTTCGGGGAAAAACATCAAATAA 59.990 36.000 0.00 0.00 0.00 1.40
3947 5259 5.343860 CGTTCGGGGAAAAACATCAAATAAC 59.656 40.000 0.00 0.00 0.00 1.89
3948 5260 6.452242 GTTCGGGGAAAAACATCAAATAACT 58.548 36.000 0.00 0.00 0.00 2.24
3949 5261 6.262193 TCGGGGAAAAACATCAAATAACTC 57.738 37.500 0.00 0.00 0.00 3.01
3950 5262 5.184287 TCGGGGAAAAACATCAAATAACTCC 59.816 40.000 0.00 0.00 0.00 3.85
3951 5263 5.623596 CGGGGAAAAACATCAAATAACTCCC 60.624 44.000 0.00 0.00 39.48 4.30
3952 5264 5.483937 GGGGAAAAACATCAAATAACTCCCT 59.516 40.000 0.00 0.00 39.99 4.20
3953 5265 6.398095 GGGAAAAACATCAAATAACTCCCTG 58.602 40.000 0.00 0.00 37.57 4.45
3954 5266 6.014584 GGGAAAAACATCAAATAACTCCCTGT 60.015 38.462 0.00 0.00 37.57 4.00
3955 5267 7.441836 GGAAAAACATCAAATAACTCCCTGTT 58.558 34.615 0.00 0.00 42.31 3.16
3956 5268 7.931407 GGAAAAACATCAAATAACTCCCTGTTT 59.069 33.333 0.00 0.00 39.89 2.83
3957 5269 9.325198 GAAAAACATCAAATAACTCCCTGTTTT 57.675 29.630 0.00 0.00 43.35 2.43
3958 5270 9.679661 AAAAACATCAAATAACTCCCTGTTTTT 57.320 25.926 14.16 14.16 44.23 1.94
3959 5271 8.661352 AAACATCAAATAACTCCCTGTTTTTG 57.339 30.769 0.00 0.00 39.89 2.44
3960 5272 7.360113 ACATCAAATAACTCCCTGTTTTTGT 57.640 32.000 0.00 0.00 39.89 2.83
3961 5273 7.791029 ACATCAAATAACTCCCTGTTTTTGTT 58.209 30.769 0.00 0.00 39.89 2.83
3962 5274 8.919145 ACATCAAATAACTCCCTGTTTTTGTTA 58.081 29.630 0.00 0.00 39.89 2.41
3963 5275 9.757227 CATCAAATAACTCCCTGTTTTTGTTAA 57.243 29.630 0.00 0.00 39.89 2.01
3965 5277 9.757227 TCAAATAACTCCCTGTTTTTGTTAATG 57.243 29.630 0.00 0.00 39.89 1.90
3966 5278 8.987890 CAAATAACTCCCTGTTTTTGTTAATGG 58.012 33.333 0.00 0.00 39.89 3.16
3967 5279 7.849322 ATAACTCCCTGTTTTTGTTAATGGT 57.151 32.000 0.00 0.00 39.89 3.55
3968 5280 6.553953 AACTCCCTGTTTTTGTTAATGGTT 57.446 33.333 0.00 0.00 34.84 3.67
3974 5560 6.765512 CCCTGTTTTTGTTAATGGTTTGTCAT 59.234 34.615 0.00 0.00 0.00 3.06
3993 5579 2.810486 GACAAAGTGTCGAGACCCG 58.190 57.895 9.40 0.57 37.67 5.28
4003 5589 0.816018 TCGAGACCCGAGATCTGAGC 60.816 60.000 0.00 0.00 43.23 4.26
4008 5594 3.681593 AGACCCGAGATCTGAGCTATAC 58.318 50.000 0.00 0.00 0.00 1.47
4011 5597 4.411927 ACCCGAGATCTGAGCTATACAAT 58.588 43.478 0.00 0.00 0.00 2.71
4051 5637 2.398554 GGAAGCCAAGATTCGCGCA 61.399 57.895 8.75 0.00 0.00 6.09
4052 5638 1.226128 GAAGCCAAGATTCGCGCAC 60.226 57.895 8.75 0.00 0.00 5.34
4070 5656 2.104253 CGGGCACACGGTCATAACC 61.104 63.158 0.00 0.00 42.66 2.85
4098 5684 1.406069 CCATGGGCGCCATATACTCTC 60.406 57.143 30.85 7.78 43.15 3.20
4118 5704 2.432874 TCGGAGAGACCAAAACACTGAA 59.567 45.455 0.00 0.00 38.90 3.02
4119 5705 2.544267 CGGAGAGACCAAAACACTGAAC 59.456 50.000 0.00 0.00 38.90 3.18
4140 5726 3.244457 ACTGGTGTTCCTAAGTTAGGCAC 60.244 47.826 22.30 21.59 45.82 5.01
4149 5735 3.694566 CCTAAGTTAGGCACCAAACCATC 59.305 47.826 16.01 0.00 39.48 3.51
4150 5736 2.969821 AGTTAGGCACCAAACCATCA 57.030 45.000 0.00 0.00 0.00 3.07
4165 5752 3.511146 AACCATCAGCTGGGTGTAAAATG 59.489 43.478 15.13 7.31 46.02 2.32
4168 5755 4.380867 CCATCAGCTGGGTGTAAAATGTTC 60.381 45.833 15.13 0.00 41.82 3.18
4185 5772 2.632996 TGTTCCCACACAAGTCTAGAGG 59.367 50.000 0.00 0.00 0.00 3.69
4191 5778 1.548269 ACACAAGTCTAGAGGAGCTGC 59.452 52.381 0.00 0.00 0.00 5.25
4192 5779 0.814457 ACAAGTCTAGAGGAGCTGCG 59.186 55.000 0.00 0.00 0.00 5.18
4201 5788 0.723981 GAGGAGCTGCGTGATGAAAC 59.276 55.000 0.00 0.00 0.00 2.78
4205 5792 3.039202 GCTGCGTGATGAAACCCCG 62.039 63.158 0.00 0.00 0.00 5.73
4210 5797 0.744414 CGTGATGAAACCCCGAGCAT 60.744 55.000 0.00 0.00 0.00 3.79
4213 5800 1.017387 GATGAAACCCCGAGCATGTC 58.983 55.000 0.00 0.00 0.00 3.06
4232 5819 1.066152 TCGATGAGTCGCTTCATCCTG 59.934 52.381 17.69 9.14 46.91 3.86
4267 5857 6.264744 ACTGCTAGCAATGCATATCAAAGATT 59.735 34.615 19.86 0.00 39.86 2.40
4268 5858 6.443792 TGCTAGCAATGCATATCAAAGATTG 58.556 36.000 16.84 0.00 35.31 2.67
4269 5859 5.345202 GCTAGCAATGCATATCAAAGATTGC 59.655 40.000 10.63 3.42 46.02 3.56
4277 5867 4.790766 GCATATCAAAGATTGCGACCCAAG 60.791 45.833 0.00 0.00 36.76 3.61
4279 5869 3.071874 TCAAAGATTGCGACCCAAGAT 57.928 42.857 0.00 0.00 36.76 2.40
4283 5873 3.742433 AGATTGCGACCCAAGATCTAG 57.258 47.619 0.00 0.00 36.76 2.43
4295 5885 7.362229 CGACCCAAGATCTAGGTTATATGACTC 60.362 44.444 16.42 2.77 32.81 3.36
4306 5896 0.681733 ATATGACTCGAGCGGGCAAT 59.318 50.000 13.61 0.03 0.00 3.56
4307 5897 0.249447 TATGACTCGAGCGGGCAATG 60.249 55.000 13.61 0.00 0.00 2.82
4312 5902 0.249447 CTCGAGCGGGCAATGTCATA 60.249 55.000 0.00 0.00 0.00 2.15
4313 5903 0.249447 TCGAGCGGGCAATGTCATAG 60.249 55.000 0.00 0.00 0.00 2.23
4318 5908 1.331756 GCGGGCAATGTCATAGTGAAG 59.668 52.381 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.887152 GTGCACTGTTTCCTTCTTGGAT 59.113 45.455 10.32 0.00 45.68 3.41
37 38 2.158755 ACCTAAGATCTTGGATTGGGCG 60.159 50.000 19.55 4.21 0.00 6.13
68 69 2.091541 CTTGAGAGCTCGGACTTCTCT 58.908 52.381 8.37 7.24 39.66 3.10
95 96 3.822735 CCTGACAATTGCCTTTCTGAAGA 59.177 43.478 5.05 0.00 34.71 2.87
102 103 1.412079 TGTGCCTGACAATTGCCTTT 58.588 45.000 5.05 0.00 0.00 3.11
181 182 4.040339 GGAGGAATTCATTTTTGGTGGTGT 59.960 41.667 7.93 0.00 0.00 4.16
213 214 2.282462 CAGTGTCAAGTGGGGGCC 60.282 66.667 0.00 0.00 0.00 5.80
240 241 1.202891 AGCCAGGTGTTTGGTAACTCC 60.203 52.381 0.00 0.00 44.53 3.85
285 286 0.467659 AGGAGGATCGGTTAGACGGG 60.468 60.000 0.00 0.00 34.37 5.28
304 305 2.180946 AGGTCATGGTGGCTGAGATA 57.819 50.000 0.00 0.00 0.00 1.98
336 337 5.753921 GGTTTCTCGATTTCTATGGTGTAGG 59.246 44.000 0.00 0.00 0.00 3.18
358 359 3.150642 TGACACTATGGGACATGTCGGT 61.151 50.000 19.33 10.13 45.62 4.69
373 374 5.050091 CGAAGCTCTATTGTTTGTTGACACT 60.050 40.000 0.00 0.00 0.00 3.55
422 423 3.117926 AGTTGTACATGCCATATCAGCCA 60.118 43.478 0.00 0.00 0.00 4.75
435 438 7.155328 GGATCGGATAGAATTCAGTTGTACAT 58.845 38.462 8.44 0.00 0.00 2.29
438 441 6.549736 TCTGGATCGGATAGAATTCAGTTGTA 59.450 38.462 8.44 0.00 0.00 2.41
441 444 6.678568 ATCTGGATCGGATAGAATTCAGTT 57.321 37.500 8.44 0.00 0.00 3.16
469 472 3.144120 CTGTCGGAGATCCTGCCCG 62.144 68.421 7.00 7.00 44.22 6.13
488 491 0.667993 ACCGACGTGTTCCGAAACTA 59.332 50.000 0.00 0.00 40.70 2.24
523 526 2.888594 CAACGTCCTACATGATCGGTT 58.111 47.619 0.00 0.00 0.00 4.44
555 558 0.033504 TGGTTGTCCTCGTGCTCTTC 59.966 55.000 0.00 0.00 34.23 2.87
591 594 8.498054 AGTGTATGATATTGTTCTCCAAGTTG 57.502 34.615 0.00 0.00 36.25 3.16
592 595 8.543774 AGAGTGTATGATATTGTTCTCCAAGTT 58.456 33.333 0.00 0.00 36.25 2.66
593 596 8.083828 AGAGTGTATGATATTGTTCTCCAAGT 57.916 34.615 0.00 0.00 36.25 3.16
594 597 9.689976 CTAGAGTGTATGATATTGTTCTCCAAG 57.310 37.037 0.00 0.00 36.25 3.61
595 598 8.144478 GCTAGAGTGTATGATATTGTTCTCCAA 58.856 37.037 0.00 0.00 37.49 3.53
596 599 7.287696 TGCTAGAGTGTATGATATTGTTCTCCA 59.712 37.037 0.00 0.00 0.00 3.86
597 600 7.661968 TGCTAGAGTGTATGATATTGTTCTCC 58.338 38.462 0.00 0.00 0.00 3.71
598 601 9.190858 CTTGCTAGAGTGTATGATATTGTTCTC 57.809 37.037 0.00 0.00 0.00 2.87
599 602 8.918116 TCTTGCTAGAGTGTATGATATTGTTCT 58.082 33.333 0.00 0.00 0.00 3.01
600 603 8.973378 GTCTTGCTAGAGTGTATGATATTGTTC 58.027 37.037 0.00 0.00 0.00 3.18
601 604 8.700051 AGTCTTGCTAGAGTGTATGATATTGTT 58.300 33.333 4.61 0.00 32.73 2.83
602 605 8.243961 AGTCTTGCTAGAGTGTATGATATTGT 57.756 34.615 4.61 0.00 32.73 2.71
603 606 7.536964 CGAGTCTTGCTAGAGTGTATGATATTG 59.463 40.741 10.37 0.00 34.15 1.90
604 607 7.589395 CGAGTCTTGCTAGAGTGTATGATATT 58.411 38.462 10.37 0.00 34.15 1.28
605 608 6.348950 GCGAGTCTTGCTAGAGTGTATGATAT 60.349 42.308 10.37 0.00 34.15 1.63
606 609 5.049336 GCGAGTCTTGCTAGAGTGTATGATA 60.049 44.000 10.37 0.00 34.15 2.15
607 610 4.261405 GCGAGTCTTGCTAGAGTGTATGAT 60.261 45.833 10.37 0.00 34.15 2.45
608 611 3.065510 GCGAGTCTTGCTAGAGTGTATGA 59.934 47.826 10.37 0.00 34.15 2.15
609 612 3.367607 GCGAGTCTTGCTAGAGTGTATG 58.632 50.000 10.37 0.00 34.15 2.39
610 613 2.359531 GGCGAGTCTTGCTAGAGTGTAT 59.640 50.000 10.37 0.00 34.15 2.29
611 614 1.743958 GGCGAGTCTTGCTAGAGTGTA 59.256 52.381 10.37 0.00 34.15 2.90
612 615 0.528470 GGCGAGTCTTGCTAGAGTGT 59.472 55.000 10.37 0.00 34.15 3.55
613 616 0.814457 AGGCGAGTCTTGCTAGAGTG 59.186 55.000 10.37 4.54 34.15 3.51
614 617 0.814457 CAGGCGAGTCTTGCTAGAGT 59.186 55.000 11.94 5.11 36.75 3.24
615 618 0.102120 CCAGGCGAGTCTTGCTAGAG 59.898 60.000 11.94 0.31 0.00 2.43
616 619 0.612174 ACCAGGCGAGTCTTGCTAGA 60.612 55.000 11.94 0.00 0.00 2.43
617 620 1.103803 TACCAGGCGAGTCTTGCTAG 58.896 55.000 11.94 4.91 0.00 3.42
618 621 1.776662 ATACCAGGCGAGTCTTGCTA 58.223 50.000 11.94 0.00 0.00 3.49
619 622 0.905357 AATACCAGGCGAGTCTTGCT 59.095 50.000 11.94 0.00 0.00 3.91
620 623 1.291132 GAATACCAGGCGAGTCTTGC 58.709 55.000 3.14 3.14 0.00 4.01
621 624 1.802880 CGGAATACCAGGCGAGTCTTG 60.803 57.143 0.00 0.00 35.59 3.02
622 625 0.460311 CGGAATACCAGGCGAGTCTT 59.540 55.000 0.00 0.00 35.59 3.01
623 626 2.017559 GCGGAATACCAGGCGAGTCT 62.018 60.000 0.00 0.00 35.59 3.24
624 627 1.591863 GCGGAATACCAGGCGAGTC 60.592 63.158 0.00 0.00 35.59 3.36
625 628 2.499685 GCGGAATACCAGGCGAGT 59.500 61.111 0.00 0.00 35.59 4.18
626 629 2.280186 GGCGGAATACCAGGCGAG 60.280 66.667 0.00 0.00 35.59 5.03
627 630 2.186602 TTTGGCGGAATACCAGGCGA 62.187 55.000 0.00 0.00 38.73 5.54
628 631 1.309499 TTTTGGCGGAATACCAGGCG 61.309 55.000 0.00 0.00 38.73 5.52
629 632 0.892063 TTTTTGGCGGAATACCAGGC 59.108 50.000 0.00 0.00 38.73 4.85
685 688 6.883756 TGGAGGTGCAAATTCTTTTTCTTTTT 59.116 30.769 0.00 0.00 0.00 1.94
686 689 6.413892 TGGAGGTGCAAATTCTTTTTCTTTT 58.586 32.000 0.00 0.00 0.00 2.27
687 690 5.988287 TGGAGGTGCAAATTCTTTTTCTTT 58.012 33.333 0.00 0.00 0.00 2.52
688 691 5.453762 CCTGGAGGTGCAAATTCTTTTTCTT 60.454 40.000 0.00 0.00 0.00 2.52
689 692 4.039609 CCTGGAGGTGCAAATTCTTTTTCT 59.960 41.667 0.00 0.00 0.00 2.52
690 693 4.309933 CCTGGAGGTGCAAATTCTTTTTC 58.690 43.478 0.00 0.00 0.00 2.29
691 694 3.494924 GCCTGGAGGTGCAAATTCTTTTT 60.495 43.478 0.00 0.00 37.57 1.94
692 695 2.037641 GCCTGGAGGTGCAAATTCTTTT 59.962 45.455 0.00 0.00 37.57 2.27
693 696 1.620323 GCCTGGAGGTGCAAATTCTTT 59.380 47.619 0.00 0.00 37.57 2.52
694 697 1.203100 AGCCTGGAGGTGCAAATTCTT 60.203 47.619 0.00 0.00 37.57 2.52
695 698 0.407139 AGCCTGGAGGTGCAAATTCT 59.593 50.000 0.00 0.00 37.57 2.40
716 719 4.037446 TGTGCACAAAAGTAATGGTTCCTC 59.963 41.667 19.28 0.00 0.00 3.71
719 722 5.527951 TCATGTGCACAAAAGTAATGGTTC 58.472 37.500 25.72 0.00 0.00 3.62
741 744 3.055747 AGGGTTAGCTAGCTGTTTGTCTC 60.056 47.826 27.68 10.31 0.00 3.36
782 785 4.887655 GGTTGATGATTTACCCACCCTAAG 59.112 45.833 0.00 0.00 0.00 2.18
783 786 4.542525 AGGTTGATGATTTACCCACCCTAA 59.457 41.667 0.00 0.00 32.20 2.69
803 806 5.198965 ACTCTCACGTGTTATGGTATAGGT 58.801 41.667 16.51 0.21 0.00 3.08
804 807 5.769484 ACTCTCACGTGTTATGGTATAGG 57.231 43.478 16.51 0.00 0.00 2.57
828 831 6.016693 TCGAGTTGAGCACATGGATTTTAAAA 60.017 34.615 2.51 2.51 0.00 1.52
829 832 5.471797 TCGAGTTGAGCACATGGATTTTAAA 59.528 36.000 0.00 0.00 0.00 1.52
830 833 5.000591 TCGAGTTGAGCACATGGATTTTAA 58.999 37.500 0.00 0.00 0.00 1.52
831 834 4.574892 TCGAGTTGAGCACATGGATTTTA 58.425 39.130 0.00 0.00 0.00 1.52
836 839 1.469767 CGATCGAGTTGAGCACATGGA 60.470 52.381 10.26 0.00 30.45 3.41
846 849 1.864711 ACAAACCACACGATCGAGTTG 59.135 47.619 24.34 18.24 0.00 3.16
853 856 2.404215 CTCTTCGACAAACCACACGAT 58.596 47.619 0.00 0.00 34.85 3.73
865 868 1.671845 ACGTCTATGCTCCTCTTCGAC 59.328 52.381 0.00 0.00 0.00 4.20
868 871 2.946329 TCAGACGTCTATGCTCCTCTTC 59.054 50.000 19.57 0.00 0.00 2.87
878 881 3.290948 AGGAGAGCTTCAGACGTCTAT 57.709 47.619 19.57 1.80 0.00 1.98
898 901 2.922387 CGACGAGAGAACGAGAGAAGTA 59.078 50.000 0.00 0.00 36.84 2.24
932 935 4.506758 GACAGGGGTTTAAATAGCACGTA 58.493 43.478 0.00 0.00 0.00 3.57
937 949 4.230745 TCTGGACAGGGGTTTAAATAGC 57.769 45.455 0.00 0.00 0.00 2.97
946 958 1.990060 CCACGATCTGGACAGGGGT 60.990 63.158 5.53 0.00 43.95 4.95
951 963 0.323629 GAAACCCCACGATCTGGACA 59.676 55.000 11.48 0.00 43.95 4.02
952 964 0.392595 GGAAACCCCACGATCTGGAC 60.393 60.000 11.48 0.95 43.95 4.02
964 979 0.036875 CCAGAGTGGAGTGGAAACCC 59.963 60.000 0.00 0.00 40.96 4.11
967 982 1.761174 GCCCAGAGTGGAGTGGAAA 59.239 57.895 0.00 0.00 40.96 3.13
968 983 2.224159 GGCCCAGAGTGGAGTGGAA 61.224 63.158 0.00 0.00 40.96 3.53
972 987 2.522198 ATCGAGGCCCAGAGTGGAGT 62.522 60.000 0.00 0.00 40.96 3.85
994 1009 4.875713 GGCGGGGTCCATTGCGAT 62.876 66.667 0.00 0.00 0.00 4.58
1134 1149 4.379243 ACCTGGCCAAGCGACTCG 62.379 66.667 7.01 0.00 0.00 4.18
1256 1271 0.653323 CAGACCAACAAACGAACGCG 60.653 55.000 3.53 3.53 44.79 6.01
1259 1314 2.031157 CCATCCAGACCAACAAACGAAC 60.031 50.000 0.00 0.00 0.00 3.95
1270 1325 0.179000 AATCGAGCACCATCCAGACC 59.821 55.000 0.00 0.00 0.00 3.85
1278 1333 3.278574 CCAGGAAATAAATCGAGCACCA 58.721 45.455 0.00 0.00 0.00 4.17
1279 1334 2.033424 GCCAGGAAATAAATCGAGCACC 59.967 50.000 0.00 0.00 0.00 5.01
1280 1335 2.682856 TGCCAGGAAATAAATCGAGCAC 59.317 45.455 0.00 0.00 0.00 4.40
1281 1336 2.997980 TGCCAGGAAATAAATCGAGCA 58.002 42.857 0.00 0.00 0.00 4.26
1302 1358 6.899393 TTTAGTGTGATGATGGAAAGCTTT 57.101 33.333 12.53 12.53 0.00 3.51
1305 1361 8.213518 TCTTATTTAGTGTGATGATGGAAAGC 57.786 34.615 0.00 0.00 0.00 3.51
1388 1444 9.587772 TCAAAATTTCGAATTACAAAGGTTGAA 57.412 25.926 0.00 0.00 0.00 2.69
1389 1445 9.587772 TTCAAAATTTCGAATTACAAAGGTTGA 57.412 25.926 0.00 0.00 0.00 3.18
1390 1446 9.631639 GTTCAAAATTTCGAATTACAAAGGTTG 57.368 29.630 0.00 0.00 0.00 3.77
1391 1447 9.594478 AGTTCAAAATTTCGAATTACAAAGGTT 57.406 25.926 0.00 0.00 0.00 3.50
1392 1448 9.594478 AAGTTCAAAATTTCGAATTACAAAGGT 57.406 25.926 0.00 0.00 0.00 3.50
1404 1460 9.623687 CTAAAGCTTCAAAAGTTCAAAATTTCG 57.376 29.630 0.00 0.00 0.00 3.46
1436 1492 7.994425 TGCATCAACTTTCCACTATTCTTAA 57.006 32.000 0.00 0.00 0.00 1.85
1444 1500 5.302568 TCTTTTCATGCATCAACTTTCCACT 59.697 36.000 0.00 0.00 0.00 4.00
1451 1507 6.395426 TCAGTTTCTTTTCATGCATCAACT 57.605 33.333 0.00 0.00 0.00 3.16
1458 1514 7.355017 GGGAATTTTTCAGTTTCTTTTCATGC 58.645 34.615 0.00 0.00 0.00 4.06
1467 1523 3.260884 GGGGAGGGGAATTTTTCAGTTTC 59.739 47.826 0.00 0.00 0.00 2.78
1470 1526 2.043115 GAGGGGAGGGGAATTTTTCAGT 59.957 50.000 0.00 0.00 0.00 3.41
1471 1527 2.624293 GGAGGGGAGGGGAATTTTTCAG 60.624 54.545 0.00 0.00 0.00 3.02
1472 1528 1.361197 GGAGGGGAGGGGAATTTTTCA 59.639 52.381 0.00 0.00 0.00 2.69
1473 1529 1.361197 TGGAGGGGAGGGGAATTTTTC 59.639 52.381 0.00 0.00 0.00 2.29
1474 1530 1.078823 GTGGAGGGGAGGGGAATTTTT 59.921 52.381 0.00 0.00 0.00 1.94
1475 1531 0.710588 GTGGAGGGGAGGGGAATTTT 59.289 55.000 0.00 0.00 0.00 1.82
1479 1535 2.124996 CAGTGGAGGGGAGGGGAA 59.875 66.667 0.00 0.00 0.00 3.97
1480 1536 4.741239 GCAGTGGAGGGGAGGGGA 62.741 72.222 0.00 0.00 0.00 4.81
1483 1539 4.087892 CGTGCAGTGGAGGGGAGG 62.088 72.222 0.00 0.00 0.00 4.30
1484 1540 4.767255 GCGTGCAGTGGAGGGGAG 62.767 72.222 6.47 0.00 0.00 4.30
1495 1620 3.498834 GATGTGGCGATGCGTGCA 61.499 61.111 0.00 0.00 0.00 4.57
1496 1621 4.241999 GGATGTGGCGATGCGTGC 62.242 66.667 0.00 0.00 0.00 5.34
1503 1628 2.828868 GCATAGGGGATGTGGCGA 59.171 61.111 0.00 0.00 37.90 5.54
1516 1641 0.108567 ACACGCACCATACACGCATA 60.109 50.000 0.00 0.00 0.00 3.14
1529 1655 1.675714 GGTTCTCATGATCCACACGCA 60.676 52.381 0.00 0.00 33.40 5.24
1535 1661 2.158957 GCTAACGGGTTCTCATGATCCA 60.159 50.000 0.00 0.00 34.54 3.41
1537 1663 2.484889 GGCTAACGGGTTCTCATGATC 58.515 52.381 0.00 0.00 0.00 2.92
1540 1666 0.463833 GGGGCTAACGGGTTCTCATG 60.464 60.000 0.00 0.00 0.00 3.07
1541 1667 0.912487 TGGGGCTAACGGGTTCTCAT 60.912 55.000 0.00 0.00 0.00 2.90
1543 1669 0.463833 CATGGGGCTAACGGGTTCTC 60.464 60.000 0.00 0.00 0.00 2.87
1546 1672 1.795951 AACCATGGGGCTAACGGGTT 61.796 55.000 18.09 0.00 37.90 4.11
1549 1675 1.035385 GGAAACCATGGGGCTAACGG 61.035 60.000 18.09 0.00 37.90 4.44
1550 1676 2.489040 GGAAACCATGGGGCTAACG 58.511 57.895 18.09 0.00 37.90 3.18
1572 2854 3.925090 GATGGGAGTACGGGGCGG 61.925 72.222 0.00 0.00 0.00 6.13
1576 2858 0.460311 GACTGTGATGGGAGTACGGG 59.540 60.000 0.00 0.00 0.00 5.28
1582 2864 0.107993 ACATGCGACTGTGATGGGAG 60.108 55.000 0.00 0.00 0.00 4.30
1583 2865 1.982430 ACATGCGACTGTGATGGGA 59.018 52.632 0.00 0.00 0.00 4.37
1584 2866 4.623814 ACATGCGACTGTGATGGG 57.376 55.556 0.00 0.00 0.00 4.00
1590 2872 0.392706 TCTCCAACACATGCGACTGT 59.607 50.000 0.00 0.00 0.00 3.55
1591 2873 1.073964 CTCTCCAACACATGCGACTG 58.926 55.000 0.00 0.00 0.00 3.51
1592 2874 0.681733 ACTCTCCAACACATGCGACT 59.318 50.000 0.00 0.00 0.00 4.18
1593 2875 1.993370 GTACTCTCCAACACATGCGAC 59.007 52.381 0.00 0.00 0.00 5.19
1594 2876 1.893137 AGTACTCTCCAACACATGCGA 59.107 47.619 0.00 0.00 0.00 5.10
1595 2877 2.370281 AGTACTCTCCAACACATGCG 57.630 50.000 0.00 0.00 0.00 4.73
1596 2878 4.065088 TGAAAGTACTCTCCAACACATGC 58.935 43.478 0.00 0.00 0.00 4.06
1597 2879 6.808008 AATGAAAGTACTCTCCAACACATG 57.192 37.500 0.00 0.00 0.00 3.21
1598 2880 9.520515 AATTAATGAAAGTACTCTCCAACACAT 57.479 29.630 0.00 0.00 0.00 3.21
1599 2881 8.783093 CAATTAATGAAAGTACTCTCCAACACA 58.217 33.333 0.00 0.00 0.00 3.72
1600 2882 8.784043 ACAATTAATGAAAGTACTCTCCAACAC 58.216 33.333 0.00 0.00 0.00 3.32
1601 2883 8.918202 ACAATTAATGAAAGTACTCTCCAACA 57.082 30.769 0.00 0.00 0.00 3.33
1602 2884 9.827411 GAACAATTAATGAAAGTACTCTCCAAC 57.173 33.333 0.00 0.00 0.00 3.77
1603 2885 9.793259 AGAACAATTAATGAAAGTACTCTCCAA 57.207 29.630 0.00 0.00 0.00 3.53
1642 2924 8.789825 ATTACTTAAATGGATGCATGCAAAAA 57.210 26.923 26.68 16.79 0.00 1.94
1678 2961 9.474313 AACTACCCATGCATTCTTTTTATTAGA 57.526 29.630 0.00 0.00 0.00 2.10
1679 2962 9.520204 CAACTACCCATGCATTCTTTTTATTAG 57.480 33.333 0.00 0.00 0.00 1.73
1681 2964 8.133024 TCAACTACCCATGCATTCTTTTTATT 57.867 30.769 0.00 0.00 0.00 1.40
1682 2965 7.716799 TCAACTACCCATGCATTCTTTTTAT 57.283 32.000 0.00 0.00 0.00 1.40
1683 2966 7.531857 TTCAACTACCCATGCATTCTTTTTA 57.468 32.000 0.00 0.00 0.00 1.52
1684 2967 6.418057 TTCAACTACCCATGCATTCTTTTT 57.582 33.333 0.00 0.00 0.00 1.94
1689 2972 5.329035 ACAATTCAACTACCCATGCATTC 57.671 39.130 0.00 0.00 0.00 2.67
1700 2983 5.761234 AGTGCTTAACCGAACAATTCAACTA 59.239 36.000 0.00 0.00 0.00 2.24
1701 2984 4.578928 AGTGCTTAACCGAACAATTCAACT 59.421 37.500 0.00 0.00 0.00 3.16
1710 2993 5.178809 ACTTGTTGATAGTGCTTAACCGAAC 59.821 40.000 0.00 0.00 0.00 3.95
1711 2994 5.302360 ACTTGTTGATAGTGCTTAACCGAA 58.698 37.500 0.00 0.00 0.00 4.30
1713 2996 5.390567 GGAACTTGTTGATAGTGCTTAACCG 60.391 44.000 0.00 0.00 0.00 4.44
1714 2997 5.472137 TGGAACTTGTTGATAGTGCTTAACC 59.528 40.000 0.00 0.00 0.00 2.85
1750 3034 5.471456 AGAAGTAATGCTGGAAACAAGACTG 59.529 40.000 0.00 0.00 42.06 3.51
1751 3035 5.625150 AGAAGTAATGCTGGAAACAAGACT 58.375 37.500 0.00 0.00 42.06 3.24
1757 3041 6.560253 TCTGAAAGAAGTAATGCTGGAAAC 57.440 37.500 0.00 0.00 42.31 2.78
1774 3058 6.829298 TGGTGTATACAACCAAGTTTCTGAAA 59.171 34.615 18.18 0.00 31.06 2.69
1779 3063 9.609346 ACTATATGGTGTATACAACCAAGTTTC 57.391 33.333 22.64 4.18 37.07 2.78
1785 3069 6.847567 AGGGAACTATATGGTGTATACAACCA 59.152 38.462 18.18 20.27 40.61 3.67
1797 3085 5.070047 ACAGTCGGTTAAGGGAACTATATGG 59.930 44.000 0.00 0.00 42.68 2.74
1811 3099 2.614983 GTGCAAAAGGAACAGTCGGTTA 59.385 45.455 0.00 0.00 40.63 2.85
1850 3138 8.748412 GCCCATGCAATATAACCAGATTAATAA 58.252 33.333 0.00 0.00 37.47 1.40
1851 3139 8.115384 AGCCCATGCAATATAACCAGATTAATA 58.885 33.333 0.00 0.00 41.13 0.98
1852 3140 6.955851 AGCCCATGCAATATAACCAGATTAAT 59.044 34.615 0.00 0.00 41.13 1.40
1885 3173 9.515020 AAACTGGTATTATCAAATTGTAATGCG 57.485 29.630 9.47 0.00 0.00 4.73
1892 3180 9.573133 GAAGGTGAAACTGGTATTATCAAATTG 57.427 33.333 0.00 0.00 36.74 2.32
1907 3195 5.690865 TCCACATGTTAAGAAGGTGAAACT 58.309 37.500 0.00 0.00 36.74 2.66
1934 3226 6.539103 GCTCCACCCTAAGAAGTAATACAAAG 59.461 42.308 0.00 0.00 0.00 2.77
2110 3403 3.118956 CGCAGGAAACTCCATTAGACTCT 60.119 47.826 0.00 0.00 39.61 3.24
2208 3501 1.739067 AAAGGAATTTCCGAGCTCCG 58.261 50.000 8.47 1.13 42.75 4.63
2273 3566 6.627087 AACTCTGAGTCCATTCCTGATAAA 57.373 37.500 11.31 0.00 0.00 1.40
2296 3589 2.166459 GTCCATGTGTCGGAGATCAGAA 59.834 50.000 0.00 0.00 40.67 3.02
2324 3617 6.486056 TCATTAGGGTATTAAGTTTGGCACA 58.514 36.000 0.00 0.00 0.00 4.57
2420 3713 2.099098 CCAGACGTTCAGCAAACCTTTT 59.901 45.455 0.00 0.00 34.11 2.27
2431 3724 1.707106 TGTAAGGTCCCAGACGTTCA 58.293 50.000 5.99 3.13 40.40 3.18
2482 3775 7.398332 ACCAATATTTTCTCCTTCTGCAAGATT 59.602 33.333 0.00 0.00 46.36 2.40
2495 3788 6.208599 TGACCACCTTCAACCAATATTTTCTC 59.791 38.462 0.00 0.00 0.00 2.87
2524 3817 7.672983 ACCAAAGTCAATGTCTAACATAGTG 57.327 36.000 0.00 0.00 37.97 2.74
2593 3886 2.242196 AGCAATACCAAGGCCAGTACAT 59.758 45.455 5.01 0.00 0.00 2.29
2618 3911 3.506455 CCAATGAGATCATGGATGCTTCC 59.494 47.826 11.69 11.69 42.94 3.46
2627 3920 3.211865 CCACCACTCCAATGAGATCATG 58.788 50.000 0.00 0.00 41.42 3.07
2628 3921 2.174210 CCCACCACTCCAATGAGATCAT 59.826 50.000 0.00 0.00 41.42 2.45
2633 3926 0.393537 GAGCCCACCACTCCAATGAG 60.394 60.000 0.00 0.00 44.62 2.90
2728 4024 6.436218 CCCTGGTTGTATAAGCTTTTACCTTT 59.564 38.462 20.12 0.00 35.38 3.11
2729 4025 5.949952 CCCTGGTTGTATAAGCTTTTACCTT 59.050 40.000 20.12 0.00 35.38 3.50
2902 4198 5.468746 CGTCAGGTTTAGAGATGAAAAACCA 59.531 40.000 16.16 0.00 43.87 3.67
2905 4201 7.497909 AGTTTCGTCAGGTTTAGAGATGAAAAA 59.502 33.333 9.74 0.00 44.29 1.94
2943 4239 5.102313 CCAGTTTAATTTCCTTCAATCCGC 58.898 41.667 0.00 0.00 0.00 5.54
2962 4258 3.268334 TGGTACAATAGGAAATGCCCAGT 59.732 43.478 0.00 0.00 32.70 4.00
3016 4312 1.066143 TGCTCCAAAAGATCGAGGTCC 60.066 52.381 0.00 0.00 0.00 4.46
3057 4353 3.004315 ACTCGGCGAAAACATGACAATTT 59.996 39.130 12.13 0.00 0.00 1.82
3062 4358 1.144969 TGACTCGGCGAAAACATGAC 58.855 50.000 12.13 0.00 0.00 3.06
3063 4359 2.093306 ATGACTCGGCGAAAACATGA 57.907 45.000 12.13 0.00 0.00 3.07
3064 4360 4.536364 AATATGACTCGGCGAAAACATG 57.464 40.909 23.24 10.62 0.00 3.21
3099 4409 1.392589 CCCAAGCAAGACCGCATTAT 58.607 50.000 0.00 0.00 0.00 1.28
3107 4417 1.760192 ATCATCAGCCCAAGCAAGAC 58.240 50.000 0.00 0.00 43.56 3.01
3118 4428 5.525378 AGAATCCACGAGTTTTATCATCAGC 59.475 40.000 0.00 0.00 0.00 4.26
3119 4429 6.510799 GCAGAATCCACGAGTTTTATCATCAG 60.511 42.308 0.00 0.00 0.00 2.90
3123 4433 4.631377 CAGCAGAATCCACGAGTTTTATCA 59.369 41.667 0.00 0.00 0.00 2.15
3134 4444 1.484240 ACCTAGAGCAGCAGAATCCAC 59.516 52.381 0.00 0.00 0.00 4.02
3139 4449 2.251818 ACTTGACCTAGAGCAGCAGAA 58.748 47.619 0.00 0.00 0.00 3.02
3196 4506 8.956446 TGGGAGATCATTATAGTCTTGTATCA 57.044 34.615 0.00 0.00 0.00 2.15
3209 4519 3.945285 GAGCGGTTTTTGGGAGATCATTA 59.055 43.478 0.00 0.00 0.00 1.90
3221 4531 3.869246 CCACATATAGACGAGCGGTTTTT 59.131 43.478 0.00 0.00 0.00 1.94
3222 4532 3.131577 TCCACATATAGACGAGCGGTTTT 59.868 43.478 0.00 0.00 0.00 2.43
3265 4575 5.071788 ACACCGATGTAATGGACTGGAATAT 59.928 40.000 0.00 0.00 37.26 1.28
3296 4606 0.322975 ATATCAGAGCATCACGCCCC 59.677 55.000 0.00 0.00 44.04 5.80
3302 4612 6.013466 TGCCCTATTTGTATATCAGAGCATCA 60.013 38.462 0.00 0.00 37.82 3.07
3311 4621 8.796475 ACATGTTTCATGCCCTATTTGTATATC 58.204 33.333 9.27 0.00 0.00 1.63
3371 4681 7.426929 AACAAGTAGAGTAAAGAGCACATTG 57.573 36.000 0.00 0.00 0.00 2.82
3373 4683 6.992715 ACAAACAAGTAGAGTAAAGAGCACAT 59.007 34.615 0.00 0.00 0.00 3.21
3415 4725 9.591792 GGACTGTAAAAACGTCTTATATTAGGT 57.408 33.333 0.00 0.00 0.00 3.08
3416 4726 9.590451 TGGACTGTAAAAACGTCTTATATTAGG 57.410 33.333 0.00 0.00 0.00 2.69
3421 4731 9.491675 TCAAATGGACTGTAAAAACGTCTTATA 57.508 29.630 0.00 0.00 0.00 0.98
3422 4732 8.385898 TCAAATGGACTGTAAAAACGTCTTAT 57.614 30.769 0.00 0.00 0.00 1.73
3423 4733 7.789273 TCAAATGGACTGTAAAAACGTCTTA 57.211 32.000 0.00 0.00 0.00 2.10
3424 4734 6.687081 TCAAATGGACTGTAAAAACGTCTT 57.313 33.333 0.00 0.00 0.00 3.01
3425 4735 6.317893 AGTTCAAATGGACTGTAAAAACGTCT 59.682 34.615 0.00 0.00 0.00 4.18
3426 4736 6.413818 CAGTTCAAATGGACTGTAAAAACGTC 59.586 38.462 12.79 0.00 0.00 4.34
3427 4737 6.262601 CAGTTCAAATGGACTGTAAAAACGT 58.737 36.000 12.79 0.00 0.00 3.99
3428 4738 5.173131 GCAGTTCAAATGGACTGTAAAAACG 59.827 40.000 20.15 0.00 33.17 3.60
3429 4739 6.039616 TGCAGTTCAAATGGACTGTAAAAAC 58.960 36.000 20.15 5.99 33.17 2.43
3430 4740 6.214191 TGCAGTTCAAATGGACTGTAAAAA 57.786 33.333 20.15 2.62 33.17 1.94
3431 4741 5.843673 TGCAGTTCAAATGGACTGTAAAA 57.156 34.783 20.15 4.68 33.17 1.52
3432 4742 5.843673 TTGCAGTTCAAATGGACTGTAAA 57.156 34.783 19.12 13.03 33.28 2.01
3433 4743 5.843673 TTTGCAGTTCAAATGGACTGTAA 57.156 34.783 17.95 17.95 39.58 2.41
3434 4744 5.843673 TTTTGCAGTTCAAATGGACTGTA 57.156 34.783 20.15 14.67 43.53 2.74
3435 4745 4.734398 TTTTGCAGTTCAAATGGACTGT 57.266 36.364 20.15 0.00 43.53 3.55
3436 4746 4.026640 CGTTTTTGCAGTTCAAATGGACTG 60.027 41.667 16.05 16.05 43.53 3.51
3437 4747 4.111916 CGTTTTTGCAGTTCAAATGGACT 58.888 39.130 0.00 0.00 43.53 3.85
3438 4748 3.862845 ACGTTTTTGCAGTTCAAATGGAC 59.137 39.130 0.00 0.00 43.53 4.02
3439 4749 4.109050 GACGTTTTTGCAGTTCAAATGGA 58.891 39.130 0.00 0.00 43.53 3.41
3440 4750 4.111916 AGACGTTTTTGCAGTTCAAATGG 58.888 39.130 0.00 0.00 43.53 3.16
3441 4751 5.516339 AGAAGACGTTTTTGCAGTTCAAATG 59.484 36.000 0.00 0.00 43.53 2.32
3442 4752 5.650543 AGAAGACGTTTTTGCAGTTCAAAT 58.349 33.333 0.00 0.00 43.53 2.32
3443 4753 5.054390 AGAAGACGTTTTTGCAGTTCAAA 57.946 34.783 0.00 0.00 42.50 2.69
3444 4754 4.695217 AGAAGACGTTTTTGCAGTTCAA 57.305 36.364 0.00 0.00 0.00 2.69
3445 4755 4.695217 AAGAAGACGTTTTTGCAGTTCA 57.305 36.364 0.00 0.00 0.00 3.18
3446 4756 8.950403 ATATAAAGAAGACGTTTTTGCAGTTC 57.050 30.769 0.00 0.00 0.00 3.01
3447 4757 9.744468 AAATATAAAGAAGACGTTTTTGCAGTT 57.256 25.926 0.00 0.00 0.00 3.16
3448 4758 9.744468 AAAATATAAAGAAGACGTTTTTGCAGT 57.256 25.926 0.00 0.00 0.00 4.40
3449 4759 9.993881 CAAAATATAAAGAAGACGTTTTTGCAG 57.006 29.630 0.00 0.00 0.00 4.41
3450 4760 8.973378 CCAAAATATAAAGAAGACGTTTTTGCA 58.027 29.630 8.51 0.00 0.00 4.08
3451 4761 8.974408 ACCAAAATATAAAGAAGACGTTTTTGC 58.026 29.630 8.51 0.00 0.00 3.68
3454 4764 9.815936 CGTACCAAAATATAAAGAAGACGTTTT 57.184 29.630 0.00 0.00 0.00 2.43
3455 4765 8.445493 CCGTACCAAAATATAAAGAAGACGTTT 58.555 33.333 0.00 0.00 0.00 3.60
3456 4766 7.818930 TCCGTACCAAAATATAAAGAAGACGTT 59.181 33.333 0.00 0.00 0.00 3.99
3457 4767 7.322664 TCCGTACCAAAATATAAAGAAGACGT 58.677 34.615 0.00 0.00 0.00 4.34
3458 4768 7.042925 CCTCCGTACCAAAATATAAAGAAGACG 60.043 40.741 0.00 0.00 0.00 4.18
3459 4769 7.226128 CCCTCCGTACCAAAATATAAAGAAGAC 59.774 40.741 0.00 0.00 0.00 3.01
3460 4770 7.126115 TCCCTCCGTACCAAAATATAAAGAAGA 59.874 37.037 0.00 0.00 0.00 2.87
3461 4771 7.277396 TCCCTCCGTACCAAAATATAAAGAAG 58.723 38.462 0.00 0.00 0.00 2.85
3462 4772 7.126115 TCTCCCTCCGTACCAAAATATAAAGAA 59.874 37.037 0.00 0.00 0.00 2.52
3463 4773 6.612456 TCTCCCTCCGTACCAAAATATAAAGA 59.388 38.462 0.00 0.00 0.00 2.52
3464 4774 6.823497 TCTCCCTCCGTACCAAAATATAAAG 58.177 40.000 0.00 0.00 0.00 1.85
3465 4775 6.811634 TCTCCCTCCGTACCAAAATATAAA 57.188 37.500 0.00 0.00 0.00 1.40
3466 4776 6.384886 AGTTCTCCCTCCGTACCAAAATATAA 59.615 38.462 0.00 0.00 0.00 0.98
3467 4777 5.901276 AGTTCTCCCTCCGTACCAAAATATA 59.099 40.000 0.00 0.00 0.00 0.86
3468 4778 4.720273 AGTTCTCCCTCCGTACCAAAATAT 59.280 41.667 0.00 0.00 0.00 1.28
3469 4779 4.098894 AGTTCTCCCTCCGTACCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
3470 4780 2.910977 AGTTCTCCCTCCGTACCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
3471 4781 2.332117 AGTTCTCCCTCCGTACCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
3472 4782 2.019807 AGTTCTCCCTCCGTACCAAA 57.980 50.000 0.00 0.00 0.00 3.28
3473 4783 2.905415 TAGTTCTCCCTCCGTACCAA 57.095 50.000 0.00 0.00 0.00 3.67
3474 4784 3.393426 AATAGTTCTCCCTCCGTACCA 57.607 47.619 0.00 0.00 0.00 3.25
3475 4785 4.750021 AAAATAGTTCTCCCTCCGTACC 57.250 45.455 0.00 0.00 0.00 3.34
3476 4786 7.279536 CCTTTTAAAATAGTTCTCCCTCCGTAC 59.720 40.741 0.09 0.00 0.00 3.67
3477 4787 7.180766 TCCTTTTAAAATAGTTCTCCCTCCGTA 59.819 37.037 0.09 0.00 0.00 4.02
3478 4788 6.013119 TCCTTTTAAAATAGTTCTCCCTCCGT 60.013 38.462 0.09 0.00 0.00 4.69
3479 4789 6.412214 TCCTTTTAAAATAGTTCTCCCTCCG 58.588 40.000 0.09 0.00 0.00 4.63
3480 4790 7.337184 CACTCCTTTTAAAATAGTTCTCCCTCC 59.663 40.741 11.46 0.00 0.00 4.30
3481 4791 8.101419 TCACTCCTTTTAAAATAGTTCTCCCTC 58.899 37.037 11.46 0.00 0.00 4.30
3482 4792 7.985589 TCACTCCTTTTAAAATAGTTCTCCCT 58.014 34.615 11.46 0.00 0.00 4.20
3483 4793 8.809468 ATCACTCCTTTTAAAATAGTTCTCCC 57.191 34.615 11.46 0.00 0.00 4.30
3502 4812 7.491696 GGACCAACACAAGTAATACTATCACTC 59.508 40.741 0.00 0.00 0.00 3.51
3510 4820 4.398044 CCCATGGACCAACACAAGTAATAC 59.602 45.833 15.22 0.00 0.00 1.89
3513 4823 2.443632 TCCCATGGACCAACACAAGTAA 59.556 45.455 15.22 0.00 0.00 2.24
3574 4884 3.303461 CCGTGAAACATTGTACGCAAAGA 60.303 43.478 5.30 0.00 38.21 2.52
3578 4888 0.236187 GCCGTGAAACATTGTACGCA 59.764 50.000 5.30 0.00 35.74 5.24
3581 4891 1.136169 GTCGGCCGTGAAACATTGTAC 60.136 52.381 27.15 7.29 35.74 2.90
3596 4906 0.673644 AGTGTTGTGCATAGGTCGGC 60.674 55.000 0.00 0.00 0.00 5.54
3605 4915 2.484770 GGTAGGACAAGAGTGTTGTGCA 60.485 50.000 23.44 9.38 42.19 4.57
3606 4916 2.143925 GGTAGGACAAGAGTGTTGTGC 58.856 52.381 15.67 15.67 38.41 4.57
3637 4947 5.593909 CCACCATGGATCAAATTGCTACTTA 59.406 40.000 21.47 0.00 40.96 2.24
3645 4955 7.182060 ACTAGTTAACCACCATGGATCAAATT 58.818 34.615 21.47 6.24 40.96 1.82
3660 4970 4.553323 TGCTTGTTCGAGACTAGTTAACC 58.447 43.478 0.88 0.00 34.20 2.85
3666 4976 5.582550 TGTATGATGCTTGTTCGAGACTAG 58.417 41.667 0.00 0.00 34.71 2.57
3671 4981 5.784750 TTTCTGTATGATGCTTGTTCGAG 57.215 39.130 0.00 0.00 0.00 4.04
3674 4984 6.546395 ACGAATTTCTGTATGATGCTTGTTC 58.454 36.000 0.00 0.00 0.00 3.18
3690 5002 5.005203 CACTGCTAGATGTCTGACGAATTTC 59.995 44.000 2.98 0.00 0.00 2.17
3700 5012 4.605183 AGTTACTCCACTGCTAGATGTCT 58.395 43.478 0.00 0.00 0.00 3.41
3702 5014 5.511363 AGTAGTTACTCCACTGCTAGATGT 58.489 41.667 0.00 0.00 37.90 3.06
3708 5020 5.511363 ACTCATAGTAGTTACTCCACTGCT 58.489 41.667 0.00 0.00 41.94 4.24
3758 5070 6.292919 GCACCGAATGGCTTTATTAGAAGTAG 60.293 42.308 0.00 0.00 39.70 2.57
3778 5090 3.059188 AGTTTTACGAACTTCATGCACCG 60.059 43.478 0.00 0.00 0.00 4.94
3780 5092 5.507077 TCAAGTTTTACGAACTTCATGCAC 58.493 37.500 0.00 0.00 38.32 4.57
3782 5094 7.519002 ACTATCAAGTTTTACGAACTTCATGC 58.481 34.615 1.44 0.00 38.32 4.06
3785 5097 9.146984 CCATACTATCAAGTTTTACGAACTTCA 57.853 33.333 1.44 0.00 38.32 3.02
3786 5098 9.148104 ACCATACTATCAAGTTTTACGAACTTC 57.852 33.333 1.44 0.00 38.32 3.01
3788 5100 9.798994 CTACCATACTATCAAGTTTTACGAACT 57.201 33.333 0.00 0.00 37.15 3.01
3789 5101 9.578439 ACTACCATACTATCAAGTTTTACGAAC 57.422 33.333 0.00 0.00 37.15 3.95
3806 5118 8.665685 CAAAAACCTTGTCATCTACTACCATAC 58.334 37.037 0.00 0.00 0.00 2.39
3810 5122 5.106277 GCCAAAAACCTTGTCATCTACTACC 60.106 44.000 0.00 0.00 0.00 3.18
3824 5136 5.543790 ACTTCATTAAGGATGCCAAAAACCT 59.456 36.000 3.20 0.00 37.01 3.50
3831 5143 4.199310 GCTGTACTTCATTAAGGATGCCA 58.801 43.478 3.20 0.79 37.01 4.92
3833 5145 3.565902 GGGCTGTACTTCATTAAGGATGC 59.434 47.826 3.20 0.00 37.01 3.91
3838 5150 4.331968 TGTTGGGGCTGTACTTCATTAAG 58.668 43.478 0.00 0.00 38.77 1.85
3840 5152 4.374689 TTGTTGGGGCTGTACTTCATTA 57.625 40.909 0.00 0.00 0.00 1.90
3851 5163 0.609131 CTTGTCGGATTGTTGGGGCT 60.609 55.000 0.00 0.00 0.00 5.19
3852 5164 0.608035 TCTTGTCGGATTGTTGGGGC 60.608 55.000 0.00 0.00 0.00 5.80
3863 5175 7.224167 GGGTATGTTAACTTCTATTCTTGTCGG 59.776 40.741 7.22 0.00 0.00 4.79
3866 5178 8.047310 CCTGGGTATGTTAACTTCTATTCTTGT 58.953 37.037 7.22 0.00 0.00 3.16
3907 5219 7.341030 TCCCCGAACGTCATATATCTATCTTA 58.659 38.462 0.00 0.00 0.00 2.10
3910 5222 6.446781 TTCCCCGAACGTCATATATCTATC 57.553 41.667 0.00 0.00 0.00 2.08
3911 5223 6.845758 TTTCCCCGAACGTCATATATCTAT 57.154 37.500 0.00 0.00 0.00 1.98
3912 5224 6.653526 TTTTCCCCGAACGTCATATATCTA 57.346 37.500 0.00 0.00 0.00 1.98
3913 5225 5.540400 TTTTCCCCGAACGTCATATATCT 57.460 39.130 0.00 0.00 0.00 1.98
3914 5226 5.524646 TGTTTTTCCCCGAACGTCATATATC 59.475 40.000 0.00 0.00 0.00 1.63
3915 5227 5.430007 TGTTTTTCCCCGAACGTCATATAT 58.570 37.500 0.00 0.00 0.00 0.86
3916 5228 4.829968 TGTTTTTCCCCGAACGTCATATA 58.170 39.130 0.00 0.00 0.00 0.86
3917 5229 3.677190 TGTTTTTCCCCGAACGTCATAT 58.323 40.909 0.00 0.00 0.00 1.78
3918 5230 3.123157 TGTTTTTCCCCGAACGTCATA 57.877 42.857 0.00 0.00 0.00 2.15
3919 5231 1.970092 TGTTTTTCCCCGAACGTCAT 58.030 45.000 0.00 0.00 0.00 3.06
3920 5232 1.874872 GATGTTTTTCCCCGAACGTCA 59.125 47.619 0.00 0.00 40.07 4.35
3921 5233 1.874872 TGATGTTTTTCCCCGAACGTC 59.125 47.619 0.00 0.00 40.50 4.34
3922 5234 1.970092 TGATGTTTTTCCCCGAACGT 58.030 45.000 0.00 0.00 0.00 3.99
3923 5235 3.357166 TTTGATGTTTTTCCCCGAACG 57.643 42.857 0.00 0.00 0.00 3.95
3924 5236 6.452242 AGTTATTTGATGTTTTTCCCCGAAC 58.548 36.000 0.00 0.00 0.00 3.95
3925 5237 6.294843 GGAGTTATTTGATGTTTTTCCCCGAA 60.295 38.462 0.00 0.00 0.00 4.30
3926 5238 5.184287 GGAGTTATTTGATGTTTTTCCCCGA 59.816 40.000 0.00 0.00 0.00 5.14
3927 5239 5.407502 GGAGTTATTTGATGTTTTTCCCCG 58.592 41.667 0.00 0.00 0.00 5.73
3928 5240 5.483937 AGGGAGTTATTTGATGTTTTTCCCC 59.516 40.000 2.26 0.00 42.14 4.81
3929 5241 6.014584 ACAGGGAGTTATTTGATGTTTTTCCC 60.015 38.462 0.00 0.00 41.62 3.97
3930 5242 6.993079 ACAGGGAGTTATTTGATGTTTTTCC 58.007 36.000 0.00 0.00 0.00 3.13
3931 5243 8.887036 AAACAGGGAGTTATTTGATGTTTTTC 57.113 30.769 0.00 0.00 40.26 2.29
3932 5244 9.679661 AAAAACAGGGAGTTATTTGATGTTTTT 57.320 25.926 16.03 16.03 46.37 1.94
3933 5245 9.108284 CAAAAACAGGGAGTTATTTGATGTTTT 57.892 29.630 7.18 7.18 45.91 2.43
3934 5246 8.264347 ACAAAAACAGGGAGTTATTTGATGTTT 58.736 29.630 15.54 0.00 40.26 2.83
3935 5247 7.791029 ACAAAAACAGGGAGTTATTTGATGTT 58.209 30.769 15.54 0.00 40.26 2.71
3936 5248 7.360113 ACAAAAACAGGGAGTTATTTGATGT 57.640 32.000 15.54 0.00 40.26 3.06
3937 5249 9.757227 TTAACAAAAACAGGGAGTTATTTGATG 57.243 29.630 15.54 0.00 40.26 3.07
3939 5251 9.757227 CATTAACAAAAACAGGGAGTTATTTGA 57.243 29.630 15.54 2.95 40.26 2.69
3940 5252 8.987890 CCATTAACAAAAACAGGGAGTTATTTG 58.012 33.333 0.00 0.00 40.26 2.32
3941 5253 8.710239 ACCATTAACAAAAACAGGGAGTTATTT 58.290 29.630 0.00 0.00 40.26 1.40
3942 5254 8.257602 ACCATTAACAAAAACAGGGAGTTATT 57.742 30.769 0.00 0.00 40.26 1.40
3943 5255 7.849322 ACCATTAACAAAAACAGGGAGTTAT 57.151 32.000 0.00 0.00 40.26 1.89
3944 5256 7.663043 AACCATTAACAAAAACAGGGAGTTA 57.337 32.000 0.00 0.00 40.26 2.24
3945 5257 6.553953 AACCATTAACAAAAACAGGGAGTT 57.446 33.333 0.00 0.00 43.89 3.01
3946 5258 6.070481 ACAAACCATTAACAAAAACAGGGAGT 60.070 34.615 0.00 0.00 0.00 3.85
3947 5259 6.345298 ACAAACCATTAACAAAAACAGGGAG 58.655 36.000 0.00 0.00 0.00 4.30
3948 5260 6.070767 TGACAAACCATTAACAAAAACAGGGA 60.071 34.615 0.00 0.00 0.00 4.20
3949 5261 6.109359 TGACAAACCATTAACAAAAACAGGG 58.891 36.000 0.00 0.00 0.00 4.45
3950 5262 7.493971 TCATGACAAACCATTAACAAAAACAGG 59.506 33.333 0.00 0.00 0.00 4.00
3951 5263 8.327429 GTCATGACAAACCATTAACAAAAACAG 58.673 33.333 21.07 0.00 0.00 3.16
3952 5264 7.819415 TGTCATGACAAACCATTAACAAAAACA 59.181 29.630 26.02 0.00 38.56 2.83
3953 5265 8.190888 TGTCATGACAAACCATTAACAAAAAC 57.809 30.769 26.02 0.00 38.56 2.43
3981 5567 0.378962 CAGATCTCGGGTCTCGACAC 59.621 60.000 0.00 0.00 43.74 3.67
3986 5572 2.264005 TAGCTCAGATCTCGGGTCTC 57.736 55.000 0.00 0.00 0.00 3.36
4008 5594 9.853555 CCTGTATGATCTTCTTAGCTAGTATTG 57.146 37.037 0.00 0.00 0.00 1.90
4011 5597 9.290988 CTTCCTGTATGATCTTCTTAGCTAGTA 57.709 37.037 0.00 0.00 0.00 1.82
4033 5619 2.398554 TGCGCGAATCTTGGCTTCC 61.399 57.895 12.10 0.00 0.00 3.46
4051 5637 1.375013 GTTATGACCGTGTGCCCGT 60.375 57.895 0.00 0.00 0.00 5.28
4052 5638 2.104253 GGTTATGACCGTGTGCCCG 61.104 63.158 0.00 0.00 35.91 6.13
4098 5684 2.526304 TCAGTGTTTTGGTCTCTCCG 57.474 50.000 0.00 0.00 39.52 4.63
4104 5690 2.752903 ACACCAGTTCAGTGTTTTGGTC 59.247 45.455 10.74 0.00 46.07 4.02
4105 5691 2.802719 ACACCAGTTCAGTGTTTTGGT 58.197 42.857 8.66 8.66 46.07 3.67
4129 5715 4.331968 CTGATGGTTTGGTGCCTAACTTA 58.668 43.478 13.45 5.80 33.45 2.24
4134 5720 0.698238 AGCTGATGGTTTGGTGCCTA 59.302 50.000 0.00 0.00 0.00 3.93
4149 5735 2.231235 GGGAACATTTTACACCCAGCTG 59.769 50.000 6.78 6.78 40.20 4.24
4150 5736 2.158385 TGGGAACATTTTACACCCAGCT 60.158 45.455 0.00 0.00 44.50 4.24
4158 5745 5.767816 AGACTTGTGTGGGAACATTTTAC 57.232 39.130 0.00 0.00 46.14 2.01
4161 5748 5.304686 TCTAGACTTGTGTGGGAACATTT 57.695 39.130 0.00 0.00 46.14 2.32
4165 5752 2.897969 TCCTCTAGACTTGTGTGGGAAC 59.102 50.000 0.00 0.00 0.00 3.62
4168 5755 1.205893 GCTCCTCTAGACTTGTGTGGG 59.794 57.143 0.00 0.00 0.00 4.61
4185 5772 1.648467 GGGGTTTCATCACGCAGCTC 61.648 60.000 0.00 0.00 0.00 4.09
4191 5778 0.744414 ATGCTCGGGGTTTCATCACG 60.744 55.000 0.00 0.00 0.00 4.35
4192 5779 0.734889 CATGCTCGGGGTTTCATCAC 59.265 55.000 0.00 0.00 0.00 3.06
4201 5788 1.300465 CTCATCGACATGCTCGGGG 60.300 63.158 14.72 9.21 43.16 5.73
4215 5802 4.100035 TCAATACAGGATGAAGCGACTCAT 59.900 41.667 0.00 0.00 39.69 2.90
4216 5803 3.447229 TCAATACAGGATGAAGCGACTCA 59.553 43.478 0.00 0.00 39.69 3.41
4228 5815 4.162131 TGCTAGCAGTTGATCAATACAGGA 59.838 41.667 14.93 3.85 0.00 3.86
4232 5819 5.210715 GCATTGCTAGCAGTTGATCAATAC 58.789 41.667 25.52 0.00 0.00 1.89
4267 5857 1.568504 AACCTAGATCTTGGGTCGCA 58.431 50.000 24.41 0.00 32.32 5.10
4268 5858 5.185249 TCATATAACCTAGATCTTGGGTCGC 59.815 44.000 24.41 0.00 32.32 5.19
4269 5859 6.434652 AGTCATATAACCTAGATCTTGGGTCG 59.565 42.308 24.41 9.99 32.32 4.79
4277 5867 5.220700 CCGCTCGAGTCATATAACCTAGATC 60.221 48.000 15.13 0.00 0.00 2.75
4279 5869 4.001652 CCGCTCGAGTCATATAACCTAGA 58.998 47.826 15.13 0.00 0.00 2.43
4283 5873 1.669211 GCCCGCTCGAGTCATATAACC 60.669 57.143 15.13 0.00 0.00 2.85
4295 5885 0.530650 ACTATGACATTGCCCGCTCG 60.531 55.000 0.00 0.00 0.00 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.