Multiple sequence alignment - TraesCS4D01G034200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G034200 chr4D 100.000 3862 0 0 1 3862 15592396 15596257 0.000000e+00 7132.0
1 TraesCS4D01G034200 chr4D 100.000 3573 0 0 4496 8068 15596891 15600463 0.000000e+00 6599.0
2 TraesCS4D01G034200 chr4D 95.544 561 21 4 3305 3862 301752097 301751538 0.000000e+00 894.0
3 TraesCS4D01G034200 chr4D 86.595 373 25 7 2375 2722 319259029 319259401 9.820000e-104 388.0
4 TraesCS4D01G034200 chr4D 92.419 277 8 2 2373 2636 15597209 15597485 4.570000e-102 383.0
5 TraesCS4D01G034200 chr4D 89.404 302 19 1 2373 2661 319267217 319267518 1.280000e-97 368.0
6 TraesCS4D01G034200 chr4D 76.215 391 73 14 119 500 69261967 69262346 1.070000e-43 189.0
7 TraesCS4D01G034200 chr4D 75.648 386 77 14 160 537 491567755 491568131 8.320000e-40 176.0
8 TraesCS4D01G034200 chr4D 100.000 28 0 0 7646 7673 502550885 502550912 1.500000e-02 52.8
9 TraesCS4D01G034200 chr4A 89.756 1474 72 27 953 2374 584973399 584971953 0.000000e+00 1812.0
10 TraesCS4D01G034200 chr4A 95.966 1066 27 10 6026 7087 584971008 584969955 0.000000e+00 1716.0
11 TraesCS4D01G034200 chr4A 94.832 774 31 5 5161 5925 584971957 584971184 0.000000e+00 1199.0
12 TraesCS4D01G034200 chr4A 86.595 746 87 6 1 744 584993199 584992465 0.000000e+00 811.0
13 TraesCS4D01G034200 chr4A 90.114 263 23 1 7084 7343 584969924 584969662 1.000000e-88 339.0
14 TraesCS4D01G034200 chr4A 83.643 269 25 15 7791 8054 584967238 584966984 1.350000e-57 235.0
15 TraesCS4D01G034200 chr4A 98.000 50 1 0 5941 5990 584971044 584970995 4.010000e-13 87.9
16 TraesCS4D01G034200 chr4B 89.148 1456 69 38 955 2373 26664185 26665588 0.000000e+00 1731.0
17 TraesCS4D01G034200 chr4B 93.568 1166 43 12 6237 7372 26666746 26667909 0.000000e+00 1709.0
18 TraesCS4D01G034200 chr4B 87.614 767 79 9 1 766 26663424 26664175 0.000000e+00 876.0
19 TraesCS4D01G034200 chr4B 89.858 424 37 6 5489 5908 26665958 26666379 2.560000e-149 540.0
20 TraesCS4D01G034200 chr4B 92.355 327 25 0 5168 5494 26665588 26665914 4.410000e-127 466.0
21 TraesCS4D01G034200 chr4B 93.852 244 13 2 7811 8054 26668383 26668624 4.600000e-97 366.0
22 TraesCS4D01G034200 chr4B 78.694 291 58 4 158 445 522338956 522338667 2.970000e-44 191.0
23 TraesCS4D01G034200 chr4B 89.041 146 16 0 6065 6210 26666513 26666658 1.790000e-41 182.0
24 TraesCS4D01G034200 chr4B 77.725 211 44 3 223 431 578220749 578220958 8.500000e-25 126.0
25 TraesCS4D01G034200 chr4B 72.705 403 86 19 223 610 665923795 665924188 6.620000e-21 113.0
26 TraesCS4D01G034200 chr4B 97.059 34 1 0 7648 7681 654819613 654819580 3.140000e-04 58.4
27 TraesCS4D01G034200 chr4B 100.000 29 0 0 7645 7673 473970459 473970487 4.000000e-03 54.7
28 TraesCS4D01G034200 chr6D 95.416 938 40 2 2374 3311 178003277 178002343 0.000000e+00 1491.0
29 TraesCS4D01G034200 chr6D 94.632 950 38 1 2375 3311 76002881 76001932 0.000000e+00 1459.0
30 TraesCS4D01G034200 chr6D 86.813 273 34 1 2373 2645 322585057 322585327 3.660000e-78 303.0
31 TraesCS4D01G034200 chr6D 87.446 231 23 4 2374 2600 289506587 289506359 2.230000e-65 261.0
32 TraesCS4D01G034200 chr6D 75.556 360 76 10 59 408 448654309 448654666 5.010000e-37 167.0
33 TraesCS4D01G034200 chr6D 94.444 36 2 0 7646 7681 395698926 395698961 1.000000e-03 56.5
34 TraesCS4D01G034200 chr7A 94.864 954 43 5 2355 3308 696025852 696026799 0.000000e+00 1485.0
35 TraesCS4D01G034200 chr7A 75.752 532 104 17 229 744 209168503 209167981 2.250000e-60 244.0
36 TraesCS4D01G034200 chr1D 95.091 937 43 2 2375 3311 321703750 321702817 0.000000e+00 1472.0
37 TraesCS4D01G034200 chr1D 96.229 663 25 0 4498 5160 476251756 476252418 0.000000e+00 1086.0
38 TraesCS4D01G034200 chr1D 95.940 665 27 0 4496 5160 143600392 143601056 0.000000e+00 1079.0
39 TraesCS4D01G034200 chr1D 95.636 527 21 2 3305 3829 108259748 108259222 0.000000e+00 845.0
40 TraesCS4D01G034200 chr1D 95.009 541 22 5 3305 3841 326150644 326151183 0.000000e+00 845.0
41 TraesCS4D01G034200 chr1D 78.172 536 94 17 136 658 251979949 251979424 3.630000e-83 320.0
42 TraesCS4D01G034200 chr1D 74.187 492 112 9 135 613 424924821 424924332 2.970000e-44 191.0
43 TraesCS4D01G034200 chr1D 74.485 388 81 14 158 537 480869061 480868684 1.400000e-32 152.0
44 TraesCS4D01G034200 chr1D 75.685 292 60 10 158 444 41323758 41324043 1.410000e-27 135.0
45 TraesCS4D01G034200 chr1D 100.000 28 0 0 7646 7673 33951319 33951292 1.500000e-02 52.8
46 TraesCS4D01G034200 chr7D 94.328 952 36 4 2375 3311 110571333 110570385 0.000000e+00 1443.0
47 TraesCS4D01G034200 chr7D 95.908 782 32 0 2527 3308 45817848 45818629 0.000000e+00 1267.0
48 TraesCS4D01G034200 chr7D 95.952 667 24 2 4496 5160 110569419 110568754 0.000000e+00 1079.0
49 TraesCS4D01G034200 chr7D 89.354 263 25 2 2373 2635 23085670 23085929 2.170000e-85 327.0
50 TraesCS4D01G034200 chr7D 97.059 34 1 0 7648 7681 68798008 68797975 3.140000e-04 58.4
51 TraesCS4D01G034200 chr3D 94.316 950 40 2 2375 3311 574778497 574777549 0.000000e+00 1443.0
52 TraesCS4D01G034200 chr3D 94.004 934 50 3 2375 3308 146047673 146048600 0.000000e+00 1410.0
53 TraesCS4D01G034200 chr3D 95.332 557 24 2 3305 3859 134500274 134500830 0.000000e+00 883.0
54 TraesCS4D01G034200 chr3D 94.831 561 25 4 3305 3862 648358 647799 0.000000e+00 872.0
55 TraesCS4D01G034200 chr3D 94.118 561 29 4 3305 3862 574777524 574776965 0.000000e+00 850.0
56 TraesCS4D01G034200 chr3D 74.684 632 125 23 119 731 593640645 593640030 1.740000e-61 248.0
57 TraesCS4D01G034200 chr3D 74.804 639 114 30 239 862 607314365 607314971 2.250000e-60 244.0
58 TraesCS4D01G034200 chr2D 86.594 1104 126 16 2665 3755 156551480 156552574 0.000000e+00 1199.0
59 TraesCS4D01G034200 chr2D 95.639 665 28 1 4496 5160 209029932 209029269 0.000000e+00 1066.0
60 TraesCS4D01G034200 chr2D 95.188 665 32 0 4496 5160 186637427 186636763 0.000000e+00 1051.0
61 TraesCS4D01G034200 chr2D 95.075 670 30 3 4496 5164 293667784 293667117 0.000000e+00 1051.0
62 TraesCS4D01G034200 chr2D 95.187 561 23 4 3305 3862 99211614 99211055 0.000000e+00 883.0
63 TraesCS4D01G034200 chr2D 96.226 530 17 3 3305 3831 392698959 392698430 0.000000e+00 865.0
64 TraesCS4D01G034200 chr2D 93.182 44 1 2 7642 7684 3424229 3424187 6.760000e-06 63.9
65 TraesCS4D01G034200 chr5D 96.707 668 17 1 4496 5163 50837869 50837207 0.000000e+00 1107.0
66 TraesCS4D01G034200 chr5D 85.969 392 19 6 2375 2732 414072651 414073040 3.530000e-103 387.0
67 TraesCS4D01G034200 chr5D 86.880 343 11 2 2373 2681 50837551 50837209 3.580000e-93 353.0
68 TraesCS4D01G034200 chr5D 89.455 275 16 1 2375 2636 50848648 50848374 1.300000e-87 335.0
69 TraesCS4D01G034200 chr5D 76.207 580 101 24 72 645 379798296 379797748 1.030000e-68 272.0
70 TraesCS4D01G034200 chr5D 76.829 492 88 19 158 633 349857348 349856867 3.740000e-63 254.0
71 TraesCS4D01G034200 chr5D 100.000 34 0 0 7648 7681 498029413 498029446 6.760000e-06 63.9
72 TraesCS4D01G034200 chr5D 100.000 31 0 0 7648 7678 50539776 50539806 3.140000e-04 58.4
73 TraesCS4D01G034200 chr5D 97.059 34 1 0 7648 7681 65371411 65371378 3.140000e-04 58.4
74 TraesCS4D01G034200 chr1A 96.396 666 24 0 4496 5161 423918795 423918130 0.000000e+00 1098.0
75 TraesCS4D01G034200 chr5A 94.603 667 35 1 4496 5162 680852106 680851441 0.000000e+00 1031.0
76 TraesCS4D01G034200 chr5A 75.904 581 99 26 72 645 480294436 480293890 8.030000e-65 259.0
77 TraesCS4D01G034200 chr5A 77.468 395 73 8 230 613 622220253 622219864 1.050000e-53 222.0
78 TraesCS4D01G034200 chr5A 78.616 318 61 7 223 535 633102803 633103118 3.820000e-48 204.0
79 TraesCS4D01G034200 chr5A 97.143 35 1 0 7639 7673 445761722 445761688 8.740000e-05 60.2
80 TraesCS4D01G034200 chr5A 94.444 36 2 0 7638 7673 43468976 43469011 1.000000e-03 56.5
81 TraesCS4D01G034200 chr6B 77.800 491 85 12 158 633 26217843 26218324 1.710000e-71 281.0
82 TraesCS4D01G034200 chr6B 94.444 36 1 1 7639 7673 249499330 249499295 4.000000e-03 54.7
83 TraesCS4D01G034200 chr2B 79.644 393 71 7 158 546 300252835 300253222 2.870000e-69 274.0
84 TraesCS4D01G034200 chr2B 77.096 489 92 11 158 633 593662401 593662882 1.730000e-66 265.0
85 TraesCS4D01G034200 chr2B 100.000 35 0 0 7639 7673 684990437 684990471 1.880000e-06 65.8
86 TraesCS4D01G034200 chr2B 97.222 36 1 0 7638 7673 748368793 748368758 2.430000e-05 62.1
87 TraesCS4D01G034200 chr1B 77.551 490 87 14 158 633 594703920 594703440 2.870000e-69 274.0
88 TraesCS4D01G034200 chr1B 76.306 536 109 14 136 658 362052783 362053313 3.710000e-68 270.0
89 TraesCS4D01G034200 chr1B 78.125 384 76 6 158 537 159159912 159159533 3.760000e-58 237.0
90 TraesCS4D01G034200 chr1B 75.567 397 79 13 158 546 649033384 649033770 6.430000e-41 180.0
91 TraesCS4D01G034200 chr1B 96.875 32 0 1 7643 7673 561697752 561697783 1.500000e-02 52.8
92 TraesCS4D01G034200 chr7B 76.518 494 97 12 135 613 215970723 215970234 1.340000e-62 252.0
93 TraesCS4D01G034200 chr7B 76.383 470 90 15 158 613 672796417 672796879 4.870000e-57 233.0
94 TraesCS4D01G034200 chr6A 77.647 425 72 17 223 632 574933040 574933456 3.760000e-58 237.0
95 TraesCS4D01G034200 chr6A 77.593 241 48 5 265 501 399728594 399728832 3.040000e-29 141.0
96 TraesCS4D01G034200 chr6A 97.059 34 1 0 7640 7673 2269847 2269880 3.140000e-04 58.4
97 TraesCS4D01G034200 chr6A 100.000 30 0 0 7644 7673 31357053 31357082 1.000000e-03 56.5
98 TraesCS4D01G034200 chr6A 100.000 28 0 0 7646 7673 21048280 21048307 1.500000e-02 52.8
99 TraesCS4D01G034200 chr2A 75.918 490 100 14 123 597 4621222 4621708 1.350000e-57 235.0
100 TraesCS4D01G034200 chr3B 97.059 34 1 0 7645 7678 30199635 30199668 3.140000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G034200 chr4D 15592396 15600463 8067 False 4704.666667 7132 97.473000 1 8068 3 chr4D.!!$F6 8067
1 TraesCS4D01G034200 chr4D 301751538 301752097 559 True 894.000000 894 95.544000 3305 3862 1 chr4D.!!$R1 557
2 TraesCS4D01G034200 chr4A 584966984 584973399 6415 True 898.150000 1812 92.051833 953 8054 6 chr4A.!!$R2 7101
3 TraesCS4D01G034200 chr4A 584992465 584993199 734 True 811.000000 811 86.595000 1 744 1 chr4A.!!$R1 743
4 TraesCS4D01G034200 chr4B 26663424 26668624 5200 False 838.571429 1731 90.776571 1 8054 7 chr4B.!!$F4 8053
5 TraesCS4D01G034200 chr6D 178002343 178003277 934 True 1491.000000 1491 95.416000 2374 3311 1 chr6D.!!$R2 937
6 TraesCS4D01G034200 chr6D 76001932 76002881 949 True 1459.000000 1459 94.632000 2375 3311 1 chr6D.!!$R1 936
7 TraesCS4D01G034200 chr7A 696025852 696026799 947 False 1485.000000 1485 94.864000 2355 3308 1 chr7A.!!$F1 953
8 TraesCS4D01G034200 chr7A 209167981 209168503 522 True 244.000000 244 75.752000 229 744 1 chr7A.!!$R1 515
9 TraesCS4D01G034200 chr1D 321702817 321703750 933 True 1472.000000 1472 95.091000 2375 3311 1 chr1D.!!$R4 936
10 TraesCS4D01G034200 chr1D 476251756 476252418 662 False 1086.000000 1086 96.229000 4498 5160 1 chr1D.!!$F4 662
11 TraesCS4D01G034200 chr1D 143600392 143601056 664 False 1079.000000 1079 95.940000 4496 5160 1 chr1D.!!$F2 664
12 TraesCS4D01G034200 chr1D 108259222 108259748 526 True 845.000000 845 95.636000 3305 3829 1 chr1D.!!$R2 524
13 TraesCS4D01G034200 chr1D 326150644 326151183 539 False 845.000000 845 95.009000 3305 3841 1 chr1D.!!$F3 536
14 TraesCS4D01G034200 chr1D 251979424 251979949 525 True 320.000000 320 78.172000 136 658 1 chr1D.!!$R3 522
15 TraesCS4D01G034200 chr7D 45817848 45818629 781 False 1267.000000 1267 95.908000 2527 3308 1 chr7D.!!$F2 781
16 TraesCS4D01G034200 chr7D 110568754 110571333 2579 True 1261.000000 1443 95.140000 2375 5160 2 chr7D.!!$R2 2785
17 TraesCS4D01G034200 chr3D 146047673 146048600 927 False 1410.000000 1410 94.004000 2375 3308 1 chr3D.!!$F2 933
18 TraesCS4D01G034200 chr3D 574776965 574778497 1532 True 1146.500000 1443 94.217000 2375 3862 2 chr3D.!!$R3 1487
19 TraesCS4D01G034200 chr3D 134500274 134500830 556 False 883.000000 883 95.332000 3305 3859 1 chr3D.!!$F1 554
20 TraesCS4D01G034200 chr3D 647799 648358 559 True 872.000000 872 94.831000 3305 3862 1 chr3D.!!$R1 557
21 TraesCS4D01G034200 chr3D 593640030 593640645 615 True 248.000000 248 74.684000 119 731 1 chr3D.!!$R2 612
22 TraesCS4D01G034200 chr3D 607314365 607314971 606 False 244.000000 244 74.804000 239 862 1 chr3D.!!$F3 623
23 TraesCS4D01G034200 chr2D 156551480 156552574 1094 False 1199.000000 1199 86.594000 2665 3755 1 chr2D.!!$F1 1090
24 TraesCS4D01G034200 chr2D 209029269 209029932 663 True 1066.000000 1066 95.639000 4496 5160 1 chr2D.!!$R4 664
25 TraesCS4D01G034200 chr2D 186636763 186637427 664 True 1051.000000 1051 95.188000 4496 5160 1 chr2D.!!$R3 664
26 TraesCS4D01G034200 chr2D 293667117 293667784 667 True 1051.000000 1051 95.075000 4496 5164 1 chr2D.!!$R5 668
27 TraesCS4D01G034200 chr2D 99211055 99211614 559 True 883.000000 883 95.187000 3305 3862 1 chr2D.!!$R2 557
28 TraesCS4D01G034200 chr2D 392698430 392698959 529 True 865.000000 865 96.226000 3305 3831 1 chr2D.!!$R6 526
29 TraesCS4D01G034200 chr5D 50837207 50837869 662 True 730.000000 1107 91.793500 2373 5163 2 chr5D.!!$R5 2790
30 TraesCS4D01G034200 chr5D 379797748 379798296 548 True 272.000000 272 76.207000 72 645 1 chr5D.!!$R4 573
31 TraesCS4D01G034200 chr1A 423918130 423918795 665 True 1098.000000 1098 96.396000 4496 5161 1 chr1A.!!$R1 665
32 TraesCS4D01G034200 chr5A 680851441 680852106 665 True 1031.000000 1031 94.603000 4496 5162 1 chr5A.!!$R4 666
33 TraesCS4D01G034200 chr5A 480293890 480294436 546 True 259.000000 259 75.904000 72 645 1 chr5A.!!$R2 573
34 TraesCS4D01G034200 chr1B 362052783 362053313 530 False 270.000000 270 76.306000 136 658 1 chr1B.!!$F1 522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
445 457 0.029300 CAACCACGAACCAAGCACAG 59.971 55.000 0.00 0.00 0.00 3.66 F
784 811 0.032130 ACACTATCTGTATGCGCGGG 59.968 55.000 8.83 0.00 0.00 6.13 F
885 912 0.034059 CCTCGAAATCCTAGCCGCAT 59.966 55.000 0.00 0.00 0.00 4.73 F
1936 2039 0.106149 GGGTAGGACGTTGCATAGGG 59.894 60.000 0.00 0.00 0.00 3.53 F
2023 2126 0.250295 TTCAGCCTTTCCGGTCACAG 60.250 55.000 0.00 0.00 34.25 3.66 F
3069 3188 0.178970 GATTCCTGCTGGATGGCCAT 60.179 55.000 20.96 20.96 44.91 4.40 F
3774 3928 4.428845 GTCCTCCGGTGTGGACTA 57.571 61.111 25.43 2.95 46.81 2.59 F
5573 5831 0.616679 CCTCCTGACCGGTTTAGGGA 60.617 60.000 28.44 21.65 35.02 4.20 F
6018 6408 0.107410 TTTGTGGAGCAACGGACAGT 60.107 50.000 0.00 0.00 36.72 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1807 1909 0.313672 TCATTGTTCTTGGCGGTTGC 59.686 50.000 0.00 0.00 41.71 4.17 R
1867 1969 0.323087 TGTGGCCTACGAGTAGCAGA 60.323 55.000 3.32 0.00 31.95 4.26 R
1996 2099 0.673985 GGAAAGGCTGAAACCACCAC 59.326 55.000 0.00 0.00 0.00 4.16 R
2890 3009 0.681175 GCCAAGGGTTGTGCTTCAAT 59.319 50.000 0.00 0.00 38.38 2.57 R
3492 3642 1.323534 CGGTTCGCGAAGATCGATTTT 59.676 47.619 24.13 0.00 43.74 1.82 R
4637 4791 2.049433 AACCTCCGTCTTCACGCG 60.049 61.111 3.53 3.53 45.29 6.01 R
5592 5850 0.038744 AAGGAGACCCGAGGTAACGA 59.961 55.000 0.00 0.00 35.25 3.85 R
6749 7204 0.174845 CGGTCGCCCTTCATAAGTCA 59.825 55.000 0.00 0.00 0.00 3.41 R
7645 8349 0.038744 TTCCGAACGGAGGGAGTAGT 59.961 55.000 15.34 0.00 46.06 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 6.513806 TGGTAACATGGTTCTCATTTCATG 57.486 37.500 0.00 0.00 46.17 3.07
100 101 6.183360 ACCTGAAAAACTGTAGAACTCTAGCA 60.183 38.462 0.00 0.00 0.00 3.49
156 159 2.105821 ACATTCAAGACCGAAGAACCCA 59.894 45.455 0.00 0.00 0.00 4.51
183 186 2.358125 CGCCAACGTCCATCACCA 60.358 61.111 0.00 0.00 33.53 4.17
198 201 1.460305 ACCAGTCTCCTGCACCACT 60.460 57.895 0.00 0.00 37.38 4.00
208 211 1.148048 TGCACCACTAGCAGCAACA 59.852 52.632 0.00 0.00 37.02 3.33
219 224 7.066284 ACCACTAGCAGCAACAATTAATAGAAG 59.934 37.037 0.00 0.00 0.00 2.85
247 252 2.355209 GGATCACCTCTTCACCTGAACC 60.355 54.545 0.00 0.00 0.00 3.62
345 355 1.209019 AGAATCTGACCGAAGCAGCAT 59.791 47.619 0.00 0.00 33.45 3.79
382 394 1.541118 TTCAGATCTGGCACCCCCA 60.541 57.895 22.42 0.00 42.79 4.96
445 457 0.029300 CAACCACGAACCAAGCACAG 59.971 55.000 0.00 0.00 0.00 3.66
649 676 1.283793 CCGCCAACAAGCAGAACTG 59.716 57.895 0.00 0.00 0.00 3.16
671 698 2.408704 CGTGTCGACAAAGGATCTGAAC 59.591 50.000 21.95 1.86 0.00 3.18
780 807 6.903419 TCTGAAGATACACTATCTGTATGCG 58.097 40.000 0.00 0.00 44.78 4.73
782 809 4.084889 AGATACACTATCTGTATGCGCG 57.915 45.455 0.00 0.00 44.78 6.86
783 810 2.699251 TACACTATCTGTATGCGCGG 57.301 50.000 8.83 0.00 33.91 6.46
784 811 0.032130 ACACTATCTGTATGCGCGGG 59.968 55.000 8.83 0.00 0.00 6.13
785 812 1.006102 ACTATCTGTATGCGCGGGC 60.006 57.895 18.81 18.81 40.52 6.13
786 813 1.738099 CTATCTGTATGCGCGGGCC 60.738 63.158 22.70 7.14 38.85 5.80
787 814 2.159819 CTATCTGTATGCGCGGGCCT 62.160 60.000 22.70 14.99 38.85 5.19
788 815 2.434658 TATCTGTATGCGCGGGCCTG 62.435 60.000 22.70 7.41 38.85 4.85
789 816 4.529219 CTGTATGCGCGGGCCTGA 62.529 66.667 22.70 3.34 38.85 3.86
790 817 4.830765 TGTATGCGCGGGCCTGAC 62.831 66.667 22.70 16.41 38.85 3.51
800 827 2.143419 GGGCCTGACGATCCCTCAT 61.143 63.158 0.84 0.00 37.08 2.90
805 832 1.114627 CTGACGATCCCTCATCACCA 58.885 55.000 0.00 0.00 0.00 4.17
809 836 0.530650 CGATCCCTCATCACCAACGG 60.531 60.000 0.00 0.00 0.00 4.44
812 839 2.819595 CCTCATCACCAACGGCCG 60.820 66.667 26.86 26.86 0.00 6.13
813 840 2.047274 CTCATCACCAACGGCCGT 60.047 61.111 28.70 28.70 0.00 5.68
864 891 3.125573 GCCGCCCGAAGAAGGTTC 61.126 66.667 0.00 0.00 0.00 3.62
865 892 2.436115 CCGCCCGAAGAAGGTTCC 60.436 66.667 0.00 0.00 0.00 3.62
866 893 2.436115 CGCCCGAAGAAGGTTCCC 60.436 66.667 0.00 0.00 0.00 3.97
867 894 2.045242 GCCCGAAGAAGGTTCCCC 60.045 66.667 0.00 0.00 0.00 4.81
868 895 2.603652 GCCCGAAGAAGGTTCCCCT 61.604 63.158 0.00 0.00 45.63 4.79
869 896 1.602771 CCCGAAGAAGGTTCCCCTC 59.397 63.158 0.00 0.00 41.56 4.30
870 897 1.218316 CCGAAGAAGGTTCCCCTCG 59.782 63.158 0.00 0.00 41.56 4.63
871 898 1.255667 CCGAAGAAGGTTCCCCTCGA 61.256 60.000 7.62 0.00 41.56 4.04
872 899 0.606604 CGAAGAAGGTTCCCCTCGAA 59.393 55.000 0.00 0.00 41.56 3.71
873 900 1.001633 CGAAGAAGGTTCCCCTCGAAA 59.998 52.381 0.00 0.00 41.56 3.46
874 901 2.354805 CGAAGAAGGTTCCCCTCGAAAT 60.355 50.000 0.00 0.00 41.56 2.17
875 902 3.271729 GAAGAAGGTTCCCCTCGAAATC 58.728 50.000 0.00 0.00 41.56 2.17
876 903 1.560146 AGAAGGTTCCCCTCGAAATCC 59.440 52.381 0.00 0.00 41.56 3.01
877 904 1.560146 GAAGGTTCCCCTCGAAATCCT 59.440 52.381 0.00 0.00 41.56 3.24
878 905 2.563039 AGGTTCCCCTCGAAATCCTA 57.437 50.000 0.00 0.00 35.62 2.94
879 906 2.399580 AGGTTCCCCTCGAAATCCTAG 58.600 52.381 0.00 0.00 35.62 3.02
880 907 1.202663 GGTTCCCCTCGAAATCCTAGC 60.203 57.143 0.00 0.00 30.39 3.42
881 908 1.129058 TTCCCCTCGAAATCCTAGCC 58.871 55.000 0.00 0.00 0.00 3.93
882 909 1.113517 TCCCCTCGAAATCCTAGCCG 61.114 60.000 0.00 0.00 0.00 5.52
883 910 1.301009 CCCTCGAAATCCTAGCCGC 60.301 63.158 0.00 0.00 0.00 6.53
884 911 1.441729 CCTCGAAATCCTAGCCGCA 59.558 57.895 0.00 0.00 0.00 5.69
885 912 0.034059 CCTCGAAATCCTAGCCGCAT 59.966 55.000 0.00 0.00 0.00 4.73
886 913 1.541233 CCTCGAAATCCTAGCCGCATT 60.541 52.381 0.00 0.00 0.00 3.56
887 914 2.288825 CCTCGAAATCCTAGCCGCATTA 60.289 50.000 0.00 0.00 0.00 1.90
888 915 2.989840 CTCGAAATCCTAGCCGCATTAG 59.010 50.000 0.00 0.00 0.00 1.73
889 916 1.461127 CGAAATCCTAGCCGCATTAGC 59.539 52.381 0.00 0.00 37.42 3.09
890 917 1.807142 GAAATCCTAGCCGCATTAGCC 59.193 52.381 0.00 0.00 37.52 3.93
891 918 0.320771 AATCCTAGCCGCATTAGCCG 60.321 55.000 0.00 0.00 37.52 5.52
892 919 1.472662 ATCCTAGCCGCATTAGCCGT 61.473 55.000 0.00 0.00 37.52 5.68
893 920 1.664965 CCTAGCCGCATTAGCCGTC 60.665 63.158 0.00 0.00 37.52 4.79
894 921 1.067416 CTAGCCGCATTAGCCGTCA 59.933 57.895 0.00 0.00 37.52 4.35
895 922 1.215655 CTAGCCGCATTAGCCGTCAC 61.216 60.000 0.00 0.00 37.52 3.67
896 923 1.950973 TAGCCGCATTAGCCGTCACA 61.951 55.000 0.00 0.00 37.52 3.58
897 924 2.395360 GCCGCATTAGCCGTCACAA 61.395 57.895 0.00 0.00 37.52 3.33
898 925 1.715585 CCGCATTAGCCGTCACAAG 59.284 57.895 0.00 0.00 37.52 3.16
899 926 0.739462 CCGCATTAGCCGTCACAAGA 60.739 55.000 0.00 0.00 37.52 3.02
900 927 0.647410 CGCATTAGCCGTCACAAGAG 59.353 55.000 0.00 0.00 37.52 2.85
901 928 1.009829 GCATTAGCCGTCACAAGAGG 58.990 55.000 0.00 0.00 33.58 3.69
907 934 3.834732 CCGTCACAAGAGGGTTAGG 57.165 57.895 0.00 0.00 43.27 2.69
908 935 1.263356 CCGTCACAAGAGGGTTAGGA 58.737 55.000 0.00 0.00 43.27 2.94
909 936 1.831736 CCGTCACAAGAGGGTTAGGAT 59.168 52.381 0.00 0.00 43.27 3.24
910 937 2.236395 CCGTCACAAGAGGGTTAGGATT 59.764 50.000 0.00 0.00 43.27 3.01
911 938 3.307480 CCGTCACAAGAGGGTTAGGATTT 60.307 47.826 0.00 0.00 43.27 2.17
912 939 4.324267 CGTCACAAGAGGGTTAGGATTTT 58.676 43.478 0.00 0.00 0.00 1.82
913 940 4.760204 CGTCACAAGAGGGTTAGGATTTTT 59.240 41.667 0.00 0.00 0.00 1.94
937 964 4.825679 GGGAGGGGGAGGGGACAG 62.826 77.778 0.00 0.00 0.00 3.51
938 965 4.825679 GGAGGGGGAGGGGACAGG 62.826 77.778 0.00 0.00 0.00 4.00
939 966 4.825679 GAGGGGGAGGGGACAGGG 62.826 77.778 0.00 0.00 0.00 4.45
941 968 4.695791 GGGGGAGGGGACAGGGTT 62.696 72.222 0.00 0.00 0.00 4.11
942 969 2.457794 GGGGAGGGGACAGGGTTA 59.542 66.667 0.00 0.00 0.00 2.85
943 970 1.693103 GGGGAGGGGACAGGGTTAG 60.693 68.421 0.00 0.00 0.00 2.34
944 971 1.693103 GGGAGGGGACAGGGTTAGG 60.693 68.421 0.00 0.00 0.00 2.69
945 972 1.082392 GGAGGGGACAGGGTTAGGT 59.918 63.158 0.00 0.00 0.00 3.08
946 973 0.549413 GGAGGGGACAGGGTTAGGTT 60.549 60.000 0.00 0.00 0.00 3.50
947 974 1.369403 GAGGGGACAGGGTTAGGTTT 58.631 55.000 0.00 0.00 0.00 3.27
948 975 1.709115 GAGGGGACAGGGTTAGGTTTT 59.291 52.381 0.00 0.00 0.00 2.43
949 976 1.709115 AGGGGACAGGGTTAGGTTTTC 59.291 52.381 0.00 0.00 0.00 2.29
950 977 1.272313 GGGGACAGGGTTAGGTTTTCC 60.272 57.143 0.00 0.00 41.05 3.13
951 978 1.272313 GGGACAGGGTTAGGTTTTCCC 60.272 57.143 0.00 0.00 41.86 3.97
980 1007 7.767745 AAAAAGTATAGTAGAAAGCCGTAGC 57.232 36.000 0.00 0.00 40.32 3.58
982 1009 3.501445 AGTATAGTAGAAAGCCGTAGCCG 59.499 47.826 0.00 0.00 41.25 5.52
1515 1609 2.795329 TCCCCTTCTTGATTGCTTGTC 58.205 47.619 0.00 0.00 0.00 3.18
1635 1734 0.252197 GTAAGTGTCGCCCATCCCTT 59.748 55.000 0.00 0.00 0.00 3.95
1679 1779 2.362375 TGAATTTGAGGCCGGGGC 60.362 61.111 13.58 13.58 41.06 5.80
1706 1806 1.003112 CGACCGGAATTTGTGGGGA 60.003 57.895 9.46 0.00 0.00 4.81
1721 1821 3.831911 TGTGGGGAAAACAATGAGAATCC 59.168 43.478 0.00 0.00 0.00 3.01
1722 1822 4.089361 GTGGGGAAAACAATGAGAATCCT 58.911 43.478 0.00 0.00 0.00 3.24
1724 1824 4.044571 TGGGGAAAACAATGAGAATCCTCT 59.955 41.667 0.00 0.00 40.10 3.69
1738 1838 2.711922 CCTCTAGGCGGTTGCTCGT 61.712 63.158 0.00 0.00 42.25 4.18
1739 1839 1.226717 CTCTAGGCGGTTGCTCGTC 60.227 63.158 0.00 0.00 42.25 4.20
1807 1909 2.507992 CTCGCCTGCTCCGTTCTG 60.508 66.667 0.00 0.00 0.00 3.02
1846 1948 1.202758 AGGAATCTGGAACGTGTTGCA 60.203 47.619 6.76 6.76 38.59 4.08
1867 1969 2.637872 AGGGGCATACATAACGCATACT 59.362 45.455 0.00 0.00 0.00 2.12
1903 2005 2.112297 AGCCGCTTTTGGGACGAA 59.888 55.556 0.00 0.00 33.84 3.85
1936 2039 0.106149 GGGTAGGACGTTGCATAGGG 59.894 60.000 0.00 0.00 0.00 3.53
1944 2047 0.469917 CGTTGCATAGGGTGGGATCT 59.530 55.000 0.00 0.00 0.00 2.75
1945 2048 1.541233 CGTTGCATAGGGTGGGATCTC 60.541 57.143 0.00 0.00 0.00 2.75
1996 2099 3.728385 AAGAATCCAAGGGACAAGGAG 57.272 47.619 0.00 0.00 37.00 3.69
2014 2117 1.609072 GAGTGGTGGTTTCAGCCTTTC 59.391 52.381 0.00 0.00 40.42 2.62
2023 2126 0.250295 TTCAGCCTTTCCGGTCACAG 60.250 55.000 0.00 0.00 34.25 3.66
2057 2160 4.393062 TCTTCTTTTCATGGAGCGATTGAC 59.607 41.667 0.00 0.00 0.00 3.18
2070 2173 5.440234 AGCGATTGACATACCTAGTACTG 57.560 43.478 5.39 0.00 0.00 2.74
2188 2291 6.562223 TCCATCCTGGATATAATTGACTTCCA 59.438 38.462 9.27 0.00 42.67 3.53
2224 2328 5.163992 ACGTTATCTACTTGCATGAACAACG 60.164 40.000 6.60 14.39 37.77 4.10
2239 2343 4.083537 TGAACAACGCTCCATATGTTTGAC 60.084 41.667 1.24 0.04 36.22 3.18
2241 2345 2.746904 CAACGCTCCATATGTTTGACCA 59.253 45.455 1.24 0.00 0.00 4.02
2243 2347 2.027192 ACGCTCCATATGTTTGACCACT 60.027 45.455 1.24 0.00 0.00 4.00
2253 2357 7.282901 CCATATGTTTGACCACTTATGTGATCA 59.717 37.037 10.20 6.02 44.45 2.92
2394 2498 3.330126 TGGTAGAACCAGGGATCCTAG 57.670 52.381 12.58 4.29 44.79 3.02
2441 2545 1.075450 GGATGGAGTAGGACGGGGT 60.075 63.158 0.00 0.00 0.00 4.95
2515 2619 1.338136 GCTGGCTAGGGTTAGAGGCA 61.338 60.000 0.00 0.00 45.11 4.75
2666 2785 2.526873 CCCGGTGGGCCTAGCTAT 60.527 66.667 16.80 0.00 35.35 2.97
2748 2867 2.048222 CGCTTGCGGAACTCCTCA 60.048 61.111 7.16 0.00 0.00 3.86
2839 2958 2.093973 CGGAATGTAGTCTGCAACCTCT 60.094 50.000 12.77 0.00 0.00 3.69
2890 3009 2.260434 GTGTAGGGCTCGTCGCAA 59.740 61.111 2.27 0.00 41.67 4.85
3069 3188 0.178970 GATTCCTGCTGGATGGCCAT 60.179 55.000 20.96 20.96 44.91 4.40
3504 3654 6.195165 GTCATAAGTGGCAAAATCGATCTTC 58.805 40.000 0.00 0.00 0.00 2.87
3774 3928 4.428845 GTCCTCCGGTGTGGACTA 57.571 61.111 25.43 2.95 46.81 2.59
4637 4791 1.524482 GTGCTGGTCATCTCCTCCC 59.476 63.158 0.00 0.00 0.00 4.30
5039 5195 6.061441 TGATTCCAAAAAGAGTCTTACAGCA 58.939 36.000 5.65 0.00 0.00 4.41
5123 5331 5.615925 ACCTAAGATAACTTGTGGGCTAG 57.384 43.478 9.98 0.00 37.53 3.42
5163 5371 2.925724 CTAAACCGGCCATAACATCCA 58.074 47.619 0.00 0.00 0.00 3.41
5220 5428 8.553459 AAAGATACTATTTCACAACTCACCTG 57.447 34.615 0.00 0.00 0.00 4.00
5378 5586 9.768662 ATTTTCTGCATTATTTGACTCTTGTTT 57.231 25.926 0.00 0.00 0.00 2.83
5388 5596 9.820229 TTATTTGACTCTTGTTTGCTATTTACG 57.180 29.630 0.00 0.00 0.00 3.18
5403 5611 1.028905 TTACGCTTGCTGGTTGCTTT 58.971 45.000 0.00 0.00 43.37 3.51
5573 5831 0.616679 CCTCCTGACCGGTTTAGGGA 60.617 60.000 28.44 21.65 35.02 4.20
5578 5836 3.014623 CCTGACCGGTTTAGGGATTTTC 58.985 50.000 24.10 3.17 35.02 2.29
5593 5851 5.568685 GGATTTTCCCTGAGCTTAACTTC 57.431 43.478 0.00 0.00 0.00 3.01
5602 5860 3.829948 TGAGCTTAACTTCGTTACCTCG 58.170 45.455 0.00 0.00 33.31 4.63
5792 6051 4.367039 TCCCTAACCAGGAGACAAAAAG 57.633 45.455 0.00 0.00 45.91 2.27
5821 6081 2.862541 AGTCATAGGCAGCAAACACAA 58.137 42.857 0.00 0.00 0.00 3.33
5829 6089 2.056577 GCAGCAAACACAAATCTCTGC 58.943 47.619 0.00 0.00 38.62 4.26
5982 6372 8.638873 TCTTGTGAACTCTGACTTTCTATGTAA 58.361 33.333 0.00 0.00 0.00 2.41
5983 6373 8.589335 TTGTGAACTCTGACTTTCTATGTAAC 57.411 34.615 0.00 0.00 0.00 2.50
5984 6374 7.722363 TGTGAACTCTGACTTTCTATGTAACA 58.278 34.615 0.00 0.00 0.00 2.41
5985 6375 7.867909 TGTGAACTCTGACTTTCTATGTAACAG 59.132 37.037 0.00 0.00 0.00 3.16
5986 6376 7.868415 GTGAACTCTGACTTTCTATGTAACAGT 59.132 37.037 0.00 0.00 0.00 3.55
5989 6379 9.614792 AACTCTGACTTTCTATGTAACAGTTTT 57.385 29.630 0.00 0.00 0.00 2.43
5990 6380 9.614792 ACTCTGACTTTCTATGTAACAGTTTTT 57.385 29.630 0.00 0.00 0.00 1.94
6016 6406 1.464734 TTTTTGTGGAGCAACGGACA 58.535 45.000 0.00 0.00 36.72 4.02
6017 6407 1.021202 TTTTGTGGAGCAACGGACAG 58.979 50.000 0.00 0.00 36.72 3.51
6018 6408 0.107410 TTTGTGGAGCAACGGACAGT 60.107 50.000 0.00 0.00 36.72 3.55
6019 6409 0.813610 TTGTGGAGCAACGGACAGTG 60.814 55.000 0.00 0.00 31.07 3.66
6020 6410 1.961277 GTGGAGCAACGGACAGTGG 60.961 63.158 0.00 0.00 0.00 4.00
6021 6411 2.358737 GGAGCAACGGACAGTGGG 60.359 66.667 0.00 0.00 0.00 4.61
6022 6412 2.741092 GAGCAACGGACAGTGGGA 59.259 61.111 0.00 0.00 0.00 4.37
6023 6413 1.070786 GAGCAACGGACAGTGGGAA 59.929 57.895 0.00 0.00 0.00 3.97
6024 6414 0.534203 GAGCAACGGACAGTGGGAAA 60.534 55.000 0.00 0.00 0.00 3.13
6025 6415 0.110486 AGCAACGGACAGTGGGAAAT 59.890 50.000 0.00 0.00 0.00 2.17
6026 6416 1.349688 AGCAACGGACAGTGGGAAATA 59.650 47.619 0.00 0.00 0.00 1.40
6027 6417 2.026262 AGCAACGGACAGTGGGAAATAT 60.026 45.455 0.00 0.00 0.00 1.28
6028 6418 2.097466 GCAACGGACAGTGGGAAATATG 59.903 50.000 0.00 0.00 0.00 1.78
6029 6419 2.038387 ACGGACAGTGGGAAATATGC 57.962 50.000 0.00 0.00 0.00 3.14
6030 6420 1.280710 ACGGACAGTGGGAAATATGCA 59.719 47.619 0.00 0.00 0.00 3.96
6087 6477 6.543831 AGACTTTCTGTGCAACTATTGACTTT 59.456 34.615 0.00 0.00 38.04 2.66
6201 6591 6.963805 GCAGTGATCTAACATTTTAGTGCTTC 59.036 38.462 0.00 0.00 36.75 3.86
6761 7216 3.116300 CGACACCGATGACTTATGAAGG 58.884 50.000 0.00 0.00 38.22 3.46
6862 7317 0.244721 GCTTCCATTCAAAAGCGCCT 59.755 50.000 2.29 0.00 38.60 5.52
7082 7538 2.495669 TGAAAAGGGAATTTCGGGCATC 59.504 45.455 0.00 0.00 41.24 3.91
7130 7620 9.878667 TTTTAAGAAACTTCCTTTCCGATTTTT 57.121 25.926 0.00 0.00 39.43 1.94
7178 7672 9.490379 TTTTTACAAACTACCAAAAGAAAGCAA 57.510 25.926 0.00 0.00 0.00 3.91
7179 7673 8.468720 TTTACAAACTACCAAAAGAAAGCAAC 57.531 30.769 0.00 0.00 0.00 4.17
7180 7674 6.280855 ACAAACTACCAAAAGAAAGCAACT 57.719 33.333 0.00 0.00 0.00 3.16
7183 7677 5.248870 ACTACCAAAAGAAAGCAACTGTG 57.751 39.130 0.00 0.00 0.00 3.66
7200 7694 3.775316 ACTGTGAAAGTAGGATACCTGGG 59.225 47.826 0.00 0.00 44.47 4.45
7248 7742 2.721167 CCACAAGCCGGATCCTCGA 61.721 63.158 5.05 0.00 0.00 4.04
7260 7754 3.243535 CGGATCCTCGAAACATGAGATGA 60.244 47.826 10.75 0.00 35.43 2.92
7267 7761 7.331026 TCCTCGAAACATGAGATGAAAATACT 58.669 34.615 0.00 0.00 35.43 2.12
7344 7932 8.378172 TCAGCAAGTACCAAATATACATTAGC 57.622 34.615 0.00 0.00 0.00 3.09
7372 7960 5.934781 TGCCAACAAAACATTCCCTAAAAT 58.065 33.333 0.00 0.00 0.00 1.82
7389 7977 4.660789 AAAATGCCAGCATATGAAGTCC 57.339 40.909 6.97 0.00 35.31 3.85
7415 8003 1.817447 AGAGGTACTGTAACAGACGCC 59.183 52.381 5.55 0.00 41.55 5.68
7417 8005 1.544691 AGGTACTGTAACAGACGCCAG 59.455 52.381 5.55 0.00 37.18 4.85
7418 8006 1.347320 GTACTGTAACAGACGCCAGC 58.653 55.000 0.00 0.00 35.18 4.85
7442 8061 4.616181 ACCGTTTTGAAGACTTCACTTG 57.384 40.909 17.52 7.93 39.87 3.16
7464 8084 0.935196 ACCGTTTCGAACACTCTTGC 59.065 50.000 0.00 0.00 0.00 4.01
7505 8125 2.851824 GCAAAATCGCCCAATCGTTAAG 59.148 45.455 0.00 0.00 0.00 1.85
7510 8130 2.546778 TCGCCCAATCGTTAAGTCATC 58.453 47.619 0.00 0.00 0.00 2.92
7544 8248 4.142469 GCTAACAACAACACAAGGTCTGTT 60.142 41.667 0.00 0.00 35.47 3.16
7552 8256 8.349245 CAACAACACAAGGTCTGTTATTATCAA 58.651 33.333 0.00 0.00 35.47 2.57
7555 8259 8.349245 CAACACAAGGTCTGTTATTATCAAACA 58.651 33.333 0.00 0.00 35.47 2.83
7556 8260 8.635765 ACACAAGGTCTGTTATTATCAAACAT 57.364 30.769 0.00 0.00 35.47 2.71
7586 8290 9.300681 ACTATTTCTCATCAATTTCCAAACTGA 57.699 29.630 0.00 0.00 0.00 3.41
7634 8338 8.498358 CAGTTAAATGAAAATTGGAAAGGAAGC 58.502 33.333 0.00 0.00 0.00 3.86
7636 8340 8.498358 GTTAAATGAAAATTGGAAAGGAAGCTG 58.502 33.333 0.00 0.00 0.00 4.24
7645 8349 8.650143 AATTGGAAAGGAAGCTGTCTTTATTA 57.350 30.769 12.67 4.26 33.85 0.98
7646 8350 7.448748 TTGGAAAGGAAGCTGTCTTTATTAC 57.551 36.000 12.67 6.57 33.85 1.89
7647 8351 6.779860 TGGAAAGGAAGCTGTCTTTATTACT 58.220 36.000 12.67 0.00 33.85 2.24
7653 8357 6.098552 AGGAAGCTGTCTTTATTACTACTCCC 59.901 42.308 0.00 0.00 31.48 4.30
7659 8363 5.954150 TGTCTTTATTACTACTCCCTCCGTT 59.046 40.000 0.00 0.00 0.00 4.44
7660 8364 6.096001 TGTCTTTATTACTACTCCCTCCGTTC 59.904 42.308 0.00 0.00 0.00 3.95
7662 8366 1.755179 TTACTACTCCCTCCGTTCGG 58.245 55.000 4.74 4.74 0.00 4.30
7671 8375 2.093869 TCCCTCCGTTCGGAAATACTTG 60.094 50.000 14.79 1.97 33.41 3.16
7674 8378 3.124636 CCTCCGTTCGGAAATACTTGTTG 59.875 47.826 14.79 0.00 33.41 3.33
7675 8379 3.068560 TCCGTTCGGAAATACTTGTTGG 58.931 45.455 11.66 0.00 0.00 3.77
7688 8480 1.264288 CTTGTTGGAGAAACGACTGGC 59.736 52.381 0.00 0.00 42.10 4.85
7699 8491 1.144057 CGACTGGCCCTATGTCACC 59.856 63.158 0.00 0.00 0.00 4.02
7712 8504 1.040646 TGTCACCGAGTTCTTGCTCT 58.959 50.000 0.00 0.00 33.55 4.09
7764 10247 0.318120 GGGTTGCCTGAATTGTGGTG 59.682 55.000 0.00 0.00 0.00 4.17
7865 10682 0.723414 CGATGCATCCATCATACGCC 59.277 55.000 20.87 0.00 46.59 5.68
7867 10684 2.362736 GATGCATCCATCATACGCCAT 58.637 47.619 16.23 0.00 45.75 4.40
7874 10691 2.027837 TCCATCATACGCCATGGAGATG 60.028 50.000 23.45 19.05 43.11 2.90
8056 10878 2.004489 CAGCTACGCTACGCTACGC 61.004 63.158 0.00 0.00 36.40 4.42
8057 10879 2.178890 AGCTACGCTACGCTACGCT 61.179 57.895 0.00 0.00 36.99 5.07
8060 10882 1.769098 CTACGCTACGCTACGCTGGA 61.769 60.000 0.00 0.00 0.00 3.86
8061 10883 1.162181 TACGCTACGCTACGCTGGAT 61.162 55.000 0.00 0.00 0.00 3.41
8063 10885 1.371881 GCTACGCTACGCTGGATCC 60.372 63.158 4.20 4.20 0.00 3.36
8064 10886 1.082038 CTACGCTACGCTGGATCCG 60.082 63.158 7.39 3.14 0.00 4.18
8065 10887 1.504647 CTACGCTACGCTGGATCCGA 61.505 60.000 7.39 0.00 0.00 4.55
8066 10888 0.887836 TACGCTACGCTGGATCCGAT 60.888 55.000 7.39 0.00 0.00 4.18
8067 10889 1.007271 CGCTACGCTGGATCCGATT 60.007 57.895 7.39 0.00 0.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 8.224389 TCAGGTTTTTAAGGTTGGTAAGTTAC 57.776 34.615 4.32 4.32 0.00 2.50
59 60 8.875803 GTTTTTCAGGTTTTTAAGGTTGGTAAG 58.124 33.333 0.00 0.00 0.00 2.34
65 66 9.027202 TCTACAGTTTTTCAGGTTTTTAAGGTT 57.973 29.630 0.00 0.00 0.00 3.50
76 77 6.223852 TGCTAGAGTTCTACAGTTTTTCAGG 58.776 40.000 0.00 0.00 0.00 3.86
100 101 4.161942 TGGCTGCCAATGCTTTATGTAAAT 59.838 37.500 21.08 0.00 38.71 1.40
183 186 0.542938 TGCTAGTGGTGCAGGAGACT 60.543 55.000 0.00 0.00 46.44 3.24
198 201 7.606073 TCACACTTCTATTAATTGTTGCTGCTA 59.394 33.333 0.00 0.00 0.00 3.49
247 252 3.032609 GCGATGGATCTGCGTCGG 61.033 66.667 13.91 0.00 34.85 4.79
445 457 0.685660 AACTGGAAGACGGAGGTTCC 59.314 55.000 0.00 0.00 42.81 3.62
649 676 0.716108 CAGATCCTTTGTCGACACGC 59.284 55.000 19.90 4.17 0.00 5.34
671 698 1.766069 GCGGCGCCAAATAATAAAGG 58.234 50.000 28.98 6.18 0.00 3.11
766 793 1.284982 GCCCGCGCATACAGATAGTG 61.285 60.000 8.75 0.00 34.03 2.74
767 794 1.006102 GCCCGCGCATACAGATAGT 60.006 57.895 8.75 0.00 34.03 2.12
768 795 1.738099 GGCCCGCGCATACAGATAG 60.738 63.158 8.75 0.00 36.38 2.08
769 796 2.207229 AGGCCCGCGCATACAGATA 61.207 57.895 8.75 0.00 36.38 1.98
773 800 4.830765 GTCAGGCCCGCGCATACA 62.831 66.667 8.75 0.00 36.38 2.29
782 809 2.105806 GATGAGGGATCGTCAGGCCC 62.106 65.000 0.00 0.00 42.37 5.80
783 810 1.369321 GATGAGGGATCGTCAGGCC 59.631 63.158 0.00 0.00 31.81 5.19
784 811 0.249657 GTGATGAGGGATCGTCAGGC 60.250 60.000 0.50 0.00 36.44 4.85
785 812 0.390860 GGTGATGAGGGATCGTCAGG 59.609 60.000 0.50 0.00 36.44 3.86
786 813 1.114627 TGGTGATGAGGGATCGTCAG 58.885 55.000 0.50 0.00 36.44 3.51
787 814 1.207089 GTTGGTGATGAGGGATCGTCA 59.793 52.381 0.00 0.00 33.17 4.35
788 815 1.802880 CGTTGGTGATGAGGGATCGTC 60.803 57.143 0.00 0.00 33.17 4.20
789 816 0.175760 CGTTGGTGATGAGGGATCGT 59.824 55.000 0.00 0.00 33.17 3.73
790 817 0.530650 CCGTTGGTGATGAGGGATCG 60.531 60.000 0.00 0.00 33.17 3.69
791 818 0.815615 GCCGTTGGTGATGAGGGATC 60.816 60.000 0.00 0.00 0.00 3.36
792 819 1.224592 GCCGTTGGTGATGAGGGAT 59.775 57.895 0.00 0.00 0.00 3.85
793 820 2.668632 GCCGTTGGTGATGAGGGA 59.331 61.111 0.00 0.00 0.00 4.20
800 827 4.308458 CCTCACGGCCGTTGGTGA 62.308 66.667 32.11 21.93 40.63 4.02
805 832 4.353437 GACGACCTCACGGCCGTT 62.353 66.667 32.11 15.48 35.00 4.44
812 839 4.477975 CTCCGCCGACGACCTCAC 62.478 72.222 0.00 0.00 43.93 3.51
848 875 2.436115 GGAACCTTCTTCGGGCGG 60.436 66.667 0.00 0.00 0.00 6.13
861 888 1.202663 GGCTAGGATTTCGAGGGGAAC 60.203 57.143 0.00 0.00 33.42 3.62
862 889 1.129058 GGCTAGGATTTCGAGGGGAA 58.871 55.000 0.00 0.00 0.00 3.97
863 890 1.113517 CGGCTAGGATTTCGAGGGGA 61.114 60.000 0.00 0.00 0.00 4.81
864 891 1.367840 CGGCTAGGATTTCGAGGGG 59.632 63.158 0.00 0.00 0.00 4.79
865 892 1.301009 GCGGCTAGGATTTCGAGGG 60.301 63.158 0.00 0.00 0.00 4.30
866 893 0.034059 ATGCGGCTAGGATTTCGAGG 59.966 55.000 0.00 0.00 0.00 4.63
867 894 1.871080 AATGCGGCTAGGATTTCGAG 58.129 50.000 0.00 0.00 37.65 4.04
868 895 2.866460 GCTAATGCGGCTAGGATTTCGA 60.866 50.000 0.00 0.00 41.31 3.71
869 896 1.461127 GCTAATGCGGCTAGGATTTCG 59.539 52.381 0.00 0.00 41.31 3.46
870 897 1.807142 GGCTAATGCGGCTAGGATTTC 59.193 52.381 0.00 0.00 41.31 2.17
871 898 1.878102 CGGCTAATGCGGCTAGGATTT 60.878 52.381 0.00 0.00 41.31 2.17
872 899 0.320771 CGGCTAATGCGGCTAGGATT 60.321 55.000 0.00 5.10 43.51 3.01
873 900 1.293498 CGGCTAATGCGGCTAGGAT 59.707 57.895 0.00 0.00 40.82 3.24
874 901 2.083835 GACGGCTAATGCGGCTAGGA 62.084 60.000 0.00 0.00 42.31 2.94
875 902 1.664965 GACGGCTAATGCGGCTAGG 60.665 63.158 0.00 0.00 42.31 3.02
876 903 1.067416 TGACGGCTAATGCGGCTAG 59.933 57.895 0.00 0.00 42.31 3.42
877 904 1.227147 GTGACGGCTAATGCGGCTA 60.227 57.895 0.00 0.00 42.31 3.93
878 905 2.511600 GTGACGGCTAATGCGGCT 60.512 61.111 0.00 0.00 42.31 5.52
879 906 2.309764 CTTGTGACGGCTAATGCGGC 62.310 60.000 0.00 0.00 42.31 6.53
880 907 0.739462 TCTTGTGACGGCTAATGCGG 60.739 55.000 0.00 0.00 43.85 5.69
881 908 0.647410 CTCTTGTGACGGCTAATGCG 59.353 55.000 0.00 0.00 40.82 4.73
882 909 1.009829 CCTCTTGTGACGGCTAATGC 58.990 55.000 0.00 0.00 38.76 3.56
883 910 1.066143 ACCCTCTTGTGACGGCTAATG 60.066 52.381 0.00 0.00 0.00 1.90
884 911 1.276622 ACCCTCTTGTGACGGCTAAT 58.723 50.000 0.00 0.00 0.00 1.73
885 912 1.053424 AACCCTCTTGTGACGGCTAA 58.947 50.000 0.00 0.00 0.00 3.09
886 913 1.822990 CTAACCCTCTTGTGACGGCTA 59.177 52.381 0.00 0.00 0.00 3.93
887 914 0.608640 CTAACCCTCTTGTGACGGCT 59.391 55.000 0.00 0.00 0.00 5.52
888 915 0.391263 CCTAACCCTCTTGTGACGGC 60.391 60.000 0.00 0.00 0.00 5.68
889 916 1.263356 TCCTAACCCTCTTGTGACGG 58.737 55.000 0.00 0.00 0.00 4.79
890 917 3.611766 AATCCTAACCCTCTTGTGACG 57.388 47.619 0.00 0.00 0.00 4.35
920 947 4.825679 CTGTCCCCTCCCCCTCCC 62.826 77.778 0.00 0.00 0.00 4.30
921 948 4.825679 CCTGTCCCCTCCCCCTCC 62.826 77.778 0.00 0.00 0.00 4.30
922 949 4.825679 CCCTGTCCCCTCCCCCTC 62.826 77.778 0.00 0.00 0.00 4.30
924 951 3.277514 TAACCCTGTCCCCTCCCCC 62.278 68.421 0.00 0.00 0.00 5.40
925 952 1.693103 CTAACCCTGTCCCCTCCCC 60.693 68.421 0.00 0.00 0.00 4.81
926 953 1.693103 CCTAACCCTGTCCCCTCCC 60.693 68.421 0.00 0.00 0.00 4.30
927 954 0.549413 AACCTAACCCTGTCCCCTCC 60.549 60.000 0.00 0.00 0.00 4.30
928 955 1.369403 AAACCTAACCCTGTCCCCTC 58.631 55.000 0.00 0.00 0.00 4.30
929 956 1.709115 GAAAACCTAACCCTGTCCCCT 59.291 52.381 0.00 0.00 0.00 4.79
930 957 1.272313 GGAAAACCTAACCCTGTCCCC 60.272 57.143 0.00 0.00 0.00 4.81
931 958 1.272313 GGGAAAACCTAACCCTGTCCC 60.272 57.143 0.00 0.00 40.39 4.46
932 959 1.612462 CGGGAAAACCTAACCCTGTCC 60.612 57.143 0.00 0.00 41.28 4.02
933 960 1.612462 CCGGGAAAACCTAACCCTGTC 60.612 57.143 0.00 0.00 41.28 3.51
934 961 0.402887 CCGGGAAAACCTAACCCTGT 59.597 55.000 0.00 0.00 41.28 4.00
935 962 0.694196 TCCGGGAAAACCTAACCCTG 59.306 55.000 0.00 0.00 41.28 4.45
936 963 1.448185 TTCCGGGAAAACCTAACCCT 58.552 50.000 7.09 0.00 41.28 4.34
937 964 2.291209 TTTCCGGGAAAACCTAACCC 57.709 50.000 19.53 0.00 40.17 4.11
963 990 2.305009 ACGGCTACGGCTTTCTACTAT 58.695 47.619 0.00 0.00 46.48 2.12
969 996 1.681025 GACGAACGGCTACGGCTTTC 61.681 60.000 0.00 0.00 46.48 2.62
982 1009 3.759828 CCGCCAACGACGACGAAC 61.760 66.667 15.32 0.00 43.93 3.95
1205 1255 1.059006 ATTAGCAGCAGGAGGAGGGG 61.059 60.000 0.00 0.00 0.00 4.79
1206 1256 0.396060 GATTAGCAGCAGGAGGAGGG 59.604 60.000 0.00 0.00 0.00 4.30
1207 1257 1.422531 AGATTAGCAGCAGGAGGAGG 58.577 55.000 0.00 0.00 0.00 4.30
1208 1258 2.485124 CCAAGATTAGCAGCAGGAGGAG 60.485 54.545 0.00 0.00 0.00 3.69
1209 1259 1.487976 CCAAGATTAGCAGCAGGAGGA 59.512 52.381 0.00 0.00 0.00 3.71
1210 1260 1.476471 CCCAAGATTAGCAGCAGGAGG 60.476 57.143 0.00 0.00 0.00 4.30
1211 1261 1.211457 ACCCAAGATTAGCAGCAGGAG 59.789 52.381 0.00 0.00 0.00 3.69
1216 1266 0.107654 ACGGACCCAAGATTAGCAGC 60.108 55.000 0.00 0.00 0.00 5.25
1340 1390 2.124570 CGCCCCATCACCTCCAAG 60.125 66.667 0.00 0.00 0.00 3.61
1348 1414 3.797353 GGAAGAGCCGCCCCATCA 61.797 66.667 0.00 0.00 0.00 3.07
1492 1586 4.162651 ACAAGCAATCAAGAAGGGGATTT 58.837 39.130 0.00 0.00 31.63 2.17
1629 1723 3.052566 GGAAGAAATCAAGGGGAAGGGAT 60.053 47.826 0.00 0.00 0.00 3.85
1635 1734 2.025887 GCAGAGGAAGAAATCAAGGGGA 60.026 50.000 0.00 0.00 0.00 4.81
1679 1779 2.521958 AATTCCGGTCGACAGGCAGG 62.522 60.000 27.55 16.29 38.73 4.85
1684 1784 0.796312 CCACAAATTCCGGTCGACAG 59.204 55.000 18.91 13.87 0.00 3.51
1706 1806 4.878397 CGCCTAGAGGATTCTCATTGTTTT 59.122 41.667 3.21 0.00 42.34 2.43
1721 1821 1.226717 GACGAGCAACCGCCTAGAG 60.227 63.158 0.00 0.00 39.83 2.43
1722 1822 1.654954 GAGACGAGCAACCGCCTAGA 61.655 60.000 0.00 0.00 39.83 2.43
1724 1824 2.882876 GAGACGAGCAACCGCCTA 59.117 61.111 0.00 0.00 39.83 3.93
1738 1838 2.771639 CCGAATCGCCCAGACGAGA 61.772 63.158 0.00 0.00 46.69 4.04
1739 1839 2.278857 CCGAATCGCCCAGACGAG 60.279 66.667 0.00 0.00 46.69 4.18
1807 1909 0.313672 TCATTGTTCTTGGCGGTTGC 59.686 50.000 0.00 0.00 41.71 4.17
1846 1948 2.637872 AGTATGCGTTATGTATGCCCCT 59.362 45.455 0.00 0.00 38.02 4.79
1848 1950 3.679980 CAGAGTATGCGTTATGTATGCCC 59.320 47.826 0.00 0.00 38.02 5.36
1849 1951 3.123621 GCAGAGTATGCGTTATGTATGCC 59.876 47.826 0.00 0.00 46.99 4.40
1867 1969 0.323087 TGTGGCCTACGAGTAGCAGA 60.323 55.000 3.32 0.00 31.95 4.26
1903 2005 3.453717 GTCCTACCCGATTTACTTTCCCT 59.546 47.826 0.00 0.00 0.00 4.20
1936 2039 3.315191 CGAGAAAGAGAGAGAGATCCCAC 59.685 52.174 0.00 0.00 0.00 4.61
1944 2047 3.680490 TCTCAAGCGAGAAAGAGAGAGA 58.320 45.455 0.00 0.00 45.47 3.10
1996 2099 0.673985 GGAAAGGCTGAAACCACCAC 59.326 55.000 0.00 0.00 0.00 4.16
2023 2126 6.207417 TCCATGAAAAGAAGATGACAGGAAAC 59.793 38.462 0.00 0.00 0.00 2.78
2057 2160 8.904834 AGAATGTCTAACACAGTACTAGGTATG 58.095 37.037 0.00 0.00 38.85 2.39
2070 2173 3.437049 GGCAGGTTCAGAATGTCTAACAC 59.563 47.826 0.00 0.00 37.40 3.32
2188 2291 7.201530 GCAAGTAGATAACGTTAAGACTGCATT 60.202 37.037 12.81 8.83 0.00 3.56
2224 2328 5.590259 ACATAAGTGGTCAAACATATGGAGC 59.410 40.000 7.80 5.29 36.50 4.70
2239 2343 3.806521 GCTGCTAGTGATCACATAAGTGG 59.193 47.826 27.02 16.36 45.91 4.00
2241 2345 6.471233 TTAGCTGCTAGTGATCACATAAGT 57.529 37.500 27.02 9.10 0.00 2.24
2243 2347 6.878317 ACTTTAGCTGCTAGTGATCACATAA 58.122 36.000 27.02 11.41 0.00 1.90
2253 2357 5.388408 ACGAAGTAACTTTAGCTGCTAGT 57.612 39.130 9.62 4.31 41.94 2.57
2420 2524 1.497161 CCCGTCCTACTCCATCCTTT 58.503 55.000 0.00 0.00 0.00 3.11
2474 2578 3.147595 CCATCTCCCTCCGACGCA 61.148 66.667 0.00 0.00 0.00 5.24
2497 2601 0.755686 CTGCCTCTAACCCTAGCCAG 59.244 60.000 0.00 0.00 0.00 4.85
2498 2602 1.338136 GCTGCCTCTAACCCTAGCCA 61.338 60.000 0.00 0.00 0.00 4.75
2515 2619 3.083997 CCCGGCTGAACCCTAGCT 61.084 66.667 0.00 0.00 40.92 3.32
2562 2679 5.944013 GGCTGTAAGACTCTTTTTGGAATC 58.056 41.667 0.00 0.00 40.68 2.52
2628 2747 3.378427 GGCAATCTTAGCCCACAAGTTAG 59.622 47.826 0.00 0.00 46.50 2.34
2666 2785 1.483415 GGAGAAGTGTTATGGCCGGTA 59.517 52.381 1.90 0.00 0.00 4.02
2748 2867 1.741770 GACGCTGGTTGATCGCCTT 60.742 57.895 7.51 0.00 0.00 4.35
2839 2958 1.099879 GCCCGCGACTCTTCTACCTA 61.100 60.000 8.23 0.00 0.00 3.08
2890 3009 0.681175 GCCAAGGGTTGTGCTTCAAT 59.319 50.000 0.00 0.00 38.38 2.57
3418 3568 1.462731 TTTTTCTGTGGCCAGCGCAT 61.463 50.000 5.11 0.00 38.66 4.73
3431 3581 3.004752 ACCAGTGTGAGCAGTTTTTCT 57.995 42.857 0.00 0.00 0.00 2.52
3492 3642 1.323534 CGGTTCGCGAAGATCGATTTT 59.676 47.619 24.13 0.00 43.74 1.82
4637 4791 2.049433 AACCTCCGTCTTCACGCG 60.049 61.111 3.53 3.53 45.29 6.01
4721 4875 3.770040 CCCGATGACCACTGCCGA 61.770 66.667 0.00 0.00 0.00 5.54
5163 5371 1.142688 AACTGGCCCTGAAGGTCCAT 61.143 55.000 0.00 0.00 40.85 3.41
5220 5428 4.590850 AACAAGATGGAGGCAAAAGTTC 57.409 40.909 0.00 0.00 0.00 3.01
5284 5492 8.293867 GCCTCAAGTATCAGTATTCAGTAGTAG 58.706 40.741 0.00 0.00 0.00 2.57
5351 5559 8.752766 ACAAGAGTCAAATAATGCAGAAAATG 57.247 30.769 0.00 0.00 0.00 2.32
5352 5560 9.768662 AAACAAGAGTCAAATAATGCAGAAAAT 57.231 25.926 0.00 0.00 0.00 1.82
5378 5586 2.107950 ACCAGCAAGCGTAAATAGCA 57.892 45.000 0.00 0.00 37.01 3.49
5403 5611 2.013006 TCCCCTACTCCTTTCCTACCA 58.987 52.381 0.00 0.00 0.00 3.25
5573 5831 4.652822 ACGAAGTTAAGCTCAGGGAAAAT 58.347 39.130 0.00 0.00 37.78 1.82
5592 5850 0.038744 AAGGAGACCCGAGGTAACGA 59.961 55.000 0.00 0.00 35.25 3.85
5593 5851 1.755179 TAAGGAGACCCGAGGTAACG 58.245 55.000 0.00 0.00 35.25 3.18
5602 5860 5.104259 ACATCAATCAGTTAAGGAGACCC 57.896 43.478 0.00 0.00 0.00 4.46
5792 6051 3.259374 TGCTGCCTATGACTAAGCTATCC 59.741 47.826 0.00 0.00 34.92 2.59
5821 6081 3.759581 TCTTTCAAAGCCTGCAGAGATT 58.240 40.909 17.39 7.62 0.00 2.40
5829 6089 7.121168 TCAGGTATGTATTTCTTTCAAAGCCTG 59.879 37.037 7.85 7.85 38.72 4.85
5865 6126 6.367374 TTGGAGTATTCACAGTGGTAATGA 57.633 37.500 0.00 0.00 0.00 2.57
5870 6131 4.640771 ACATTGGAGTATTCACAGTGGT 57.359 40.909 0.00 0.00 0.00 4.16
5939 6329 5.237127 TCACAAGATTGCAACTGTGAACTAG 59.763 40.000 26.49 9.87 34.01 2.57
5997 6387 1.403679 CTGTCCGTTGCTCCACAAAAA 59.596 47.619 0.00 0.00 40.82 1.94
5998 6388 1.021202 CTGTCCGTTGCTCCACAAAA 58.979 50.000 0.00 0.00 40.82 2.44
5999 6389 0.107410 ACTGTCCGTTGCTCCACAAA 60.107 50.000 0.00 0.00 40.82 2.83
6000 6390 0.813610 CACTGTCCGTTGCTCCACAA 60.814 55.000 0.00 0.00 35.33 3.33
6001 6391 1.227527 CACTGTCCGTTGCTCCACA 60.228 57.895 0.00 0.00 0.00 4.17
6002 6392 1.961277 CCACTGTCCGTTGCTCCAC 60.961 63.158 0.00 0.00 0.00 4.02
6003 6393 2.425592 CCACTGTCCGTTGCTCCA 59.574 61.111 0.00 0.00 0.00 3.86
6004 6394 2.358737 CCCACTGTCCGTTGCTCC 60.359 66.667 0.00 0.00 0.00 4.70
6005 6395 0.534203 TTTCCCACTGTCCGTTGCTC 60.534 55.000 0.00 0.00 0.00 4.26
6006 6396 0.110486 ATTTCCCACTGTCCGTTGCT 59.890 50.000 0.00 0.00 0.00 3.91
6007 6397 1.816074 TATTTCCCACTGTCCGTTGC 58.184 50.000 0.00 0.00 0.00 4.17
6008 6398 2.097466 GCATATTTCCCACTGTCCGTTG 59.903 50.000 0.00 0.00 0.00 4.10
6009 6399 2.290641 TGCATATTTCCCACTGTCCGTT 60.291 45.455 0.00 0.00 0.00 4.44
6010 6400 1.280710 TGCATATTTCCCACTGTCCGT 59.719 47.619 0.00 0.00 0.00 4.69
6011 6401 2.036958 TGCATATTTCCCACTGTCCG 57.963 50.000 0.00 0.00 0.00 4.79
6012 6402 3.088532 TGTTGCATATTTCCCACTGTCC 58.911 45.455 0.00 0.00 0.00 4.02
6013 6403 3.428045 GCTGTTGCATATTTCCCACTGTC 60.428 47.826 0.00 0.00 39.41 3.51
6014 6404 2.493278 GCTGTTGCATATTTCCCACTGT 59.507 45.455 0.00 0.00 39.41 3.55
6015 6405 2.756760 AGCTGTTGCATATTTCCCACTG 59.243 45.455 0.00 0.00 42.74 3.66
6016 6406 3.091633 AGCTGTTGCATATTTCCCACT 57.908 42.857 0.00 0.00 42.74 4.00
6017 6407 3.874392 AAGCTGTTGCATATTTCCCAC 57.126 42.857 0.00 0.00 42.74 4.61
6018 6408 3.055963 CCAAAGCTGTTGCATATTTCCCA 60.056 43.478 0.00 0.00 42.74 4.37
6019 6409 3.195396 TCCAAAGCTGTTGCATATTTCCC 59.805 43.478 0.00 0.00 42.74 3.97
6020 6410 4.454728 TCCAAAGCTGTTGCATATTTCC 57.545 40.909 0.00 0.00 42.74 3.13
6021 6411 5.346822 CACTTCCAAAGCTGTTGCATATTTC 59.653 40.000 0.00 0.00 42.74 2.17
6022 6412 5.221501 ACACTTCCAAAGCTGTTGCATATTT 60.222 36.000 0.00 0.00 42.74 1.40
6023 6413 4.281688 ACACTTCCAAAGCTGTTGCATATT 59.718 37.500 0.00 0.00 42.74 1.28
6024 6414 3.828451 ACACTTCCAAAGCTGTTGCATAT 59.172 39.130 0.00 0.00 42.74 1.78
6025 6415 3.004629 CACACTTCCAAAGCTGTTGCATA 59.995 43.478 0.00 0.00 42.74 3.14
6026 6416 2.034124 ACACTTCCAAAGCTGTTGCAT 58.966 42.857 0.00 0.00 42.74 3.96
6027 6417 1.134753 CACACTTCCAAAGCTGTTGCA 59.865 47.619 0.00 0.00 42.74 4.08
6028 6418 1.843992 CACACTTCCAAAGCTGTTGC 58.156 50.000 0.00 0.00 40.05 4.17
6029 6419 1.134753 TGCACACTTCCAAAGCTGTTG 59.865 47.619 0.00 0.00 0.00 3.33
6030 6420 1.473258 TGCACACTTCCAAAGCTGTT 58.527 45.000 0.00 0.00 0.00 3.16
6087 6477 0.035915 TGGCCAAGTTGCACGCTATA 60.036 50.000 0.61 0.00 0.00 1.31
6201 6591 0.676782 CTGGGCTAAACCGGTGAAGG 60.677 60.000 8.52 0.00 40.62 3.46
6749 7204 0.174845 CGGTCGCCCTTCATAAGTCA 59.825 55.000 0.00 0.00 0.00 3.41
6862 7317 7.571080 AGAATTAATAATTTTTACGCCGGGA 57.429 32.000 2.18 0.00 0.00 5.14
6878 7334 8.325046 GCTGGGAGAATATCACCTAGAATTAAT 58.675 37.037 10.52 0.00 37.80 1.40
7082 7538 2.843701 AGAGAGACAAGTGTGGCAAAG 58.156 47.619 0.00 0.00 33.83 2.77
7165 7659 5.170748 ACTTTCACAGTTGCTTTCTTTTGG 58.829 37.500 0.00 0.00 27.32 3.28
7178 7672 3.775316 CCCAGGTATCCTACTTTCACAGT 59.225 47.826 0.00 0.00 39.87 3.55
7179 7673 3.134804 CCCCAGGTATCCTACTTTCACAG 59.865 52.174 0.00 0.00 29.64 3.66
7180 7674 3.112263 CCCCAGGTATCCTACTTTCACA 58.888 50.000 0.00 0.00 29.64 3.58
7183 7677 1.070289 CGCCCCAGGTATCCTACTTTC 59.930 57.143 0.00 0.00 29.64 2.62
7200 7694 2.009774 ACATGAGTTCTATGTTGCGCC 58.990 47.619 4.18 0.00 35.32 6.53
7248 7742 8.641498 AACCTGAGTATTTTCATCTCATGTTT 57.359 30.769 8.44 0.00 40.93 2.83
7260 7754 8.520351 GTTATGCCTGTTAAACCTGAGTATTTT 58.480 33.333 0.00 0.00 0.00 1.82
7267 7761 4.331968 CCTGTTATGCCTGTTAAACCTGA 58.668 43.478 0.00 0.00 0.00 3.86
7344 7932 3.250521 GGGAATGTTTTGTTGGCAATGTG 59.749 43.478 1.92 0.00 34.18 3.21
7372 7960 3.808265 GCTATGGACTTCATATGCTGGCA 60.808 47.826 0.00 0.00 37.67 4.92
7415 8003 4.213270 TGAAGTCTTCAAAACGGTATGCTG 59.787 41.667 13.00 0.00 36.59 4.41
7417 8005 4.213482 AGTGAAGTCTTCAAAACGGTATGC 59.787 41.667 16.86 1.09 42.15 3.14
7418 8006 5.924475 AGTGAAGTCTTCAAAACGGTATG 57.076 39.130 16.86 0.00 42.15 2.39
7442 8061 2.061740 AGAGTGTTCGAAACGGTAGC 57.938 50.000 0.00 0.00 0.00 3.58
7479 8099 1.204467 GATTGGGCGATTTTGCAGGAA 59.796 47.619 0.00 0.00 36.28 3.36
7480 8100 0.817013 GATTGGGCGATTTTGCAGGA 59.183 50.000 0.00 0.00 36.28 3.86
7481 8101 0.526096 CGATTGGGCGATTTTGCAGG 60.526 55.000 0.00 0.00 36.28 4.85
7492 8112 3.495001 GCTAGATGACTTAACGATTGGGC 59.505 47.826 0.00 0.00 0.00 5.36
7522 8226 5.560966 AACAGACCTTGTGTTGTTGTTAG 57.439 39.130 0.00 0.00 40.74 2.34
7591 8295 4.647564 AACTGAAACCATCCATCTGTCT 57.352 40.909 0.00 0.00 0.00 3.41
7601 8305 9.844257 TTCCAATTTTCATTTAACTGAAACCAT 57.156 25.926 17.66 9.22 43.03 3.55
7602 8306 9.672673 TTTCCAATTTTCATTTAACTGAAACCA 57.327 25.926 17.66 7.56 43.03 3.67
7624 8328 8.041919 AGTAGTAATAAAGACAGCTTCCTTTCC 58.958 37.037 12.00 2.61 34.74 3.13
7634 8338 5.593502 ACGGAGGGAGTAGTAATAAAGACAG 59.406 44.000 0.00 0.00 0.00 3.51
7636 8340 6.462552 AACGGAGGGAGTAGTAATAAAGAC 57.537 41.667 0.00 0.00 0.00 3.01
7645 8349 0.038744 TTCCGAACGGAGGGAGTAGT 59.961 55.000 15.34 0.00 46.06 2.73
7646 8350 1.180029 TTTCCGAACGGAGGGAGTAG 58.820 55.000 15.34 0.00 46.06 2.57
7647 8351 1.856629 ATTTCCGAACGGAGGGAGTA 58.143 50.000 15.34 0.00 46.06 2.59
7653 8357 3.124636 CCAACAAGTATTTCCGAACGGAG 59.875 47.826 15.34 5.60 46.06 4.63
7659 8363 4.449743 CGTTTCTCCAACAAGTATTTCCGA 59.550 41.667 0.00 0.00 34.68 4.55
7660 8364 4.449743 TCGTTTCTCCAACAAGTATTTCCG 59.550 41.667 0.00 0.00 34.68 4.30
7662 8366 6.363473 CAGTCGTTTCTCCAACAAGTATTTC 58.637 40.000 0.00 0.00 34.68 2.17
7671 8375 1.235281 GGGCCAGTCGTTTCTCCAAC 61.235 60.000 4.39 0.00 0.00 3.77
7674 8378 0.831307 ATAGGGCCAGTCGTTTCTCC 59.169 55.000 6.18 0.00 0.00 3.71
7675 8379 1.207329 ACATAGGGCCAGTCGTTTCTC 59.793 52.381 6.18 0.00 0.00 2.87
7688 8480 2.893637 CAAGAACTCGGTGACATAGGG 58.106 52.381 0.00 0.00 0.00 3.53
7699 8491 4.536364 TTTTTGTCAGAGCAAGAACTCG 57.464 40.909 0.00 0.00 41.77 4.18
7721 8513 6.353082 CCTCCCTCCAACTATCACTTTACAAT 60.353 42.308 0.00 0.00 0.00 2.71
7723 8515 4.469945 CCTCCCTCCAACTATCACTTTACA 59.530 45.833 0.00 0.00 0.00 2.41
7724 8516 4.141688 CCCTCCCTCCAACTATCACTTTAC 60.142 50.000 0.00 0.00 0.00 2.01
7725 8517 4.037927 CCCTCCCTCCAACTATCACTTTA 58.962 47.826 0.00 0.00 0.00 1.85
7738 10217 1.575447 ATTCAGGCAACCCTCCCTCC 61.575 60.000 0.00 0.00 40.33 4.30
7781 10264 5.866207 ACCTTTTTGTTTCTCGAGGAGTAT 58.134 37.500 13.56 0.00 0.00 2.12
7782 10265 5.286267 ACCTTTTTGTTTCTCGAGGAGTA 57.714 39.130 13.56 0.00 0.00 2.59
7783 10266 4.152284 ACCTTTTTGTTTCTCGAGGAGT 57.848 40.909 13.56 0.00 0.00 3.85
7784 10267 5.273944 CAAACCTTTTTGTTTCTCGAGGAG 58.726 41.667 13.56 0.00 37.85 3.69
7785 10268 4.439563 GCAAACCTTTTTGTTTCTCGAGGA 60.440 41.667 13.56 0.00 43.62 3.71
7786 10269 3.796717 GCAAACCTTTTTGTTTCTCGAGG 59.203 43.478 13.56 0.00 43.62 4.63
7787 10270 3.796717 GGCAAACCTTTTTGTTTCTCGAG 59.203 43.478 5.93 5.93 43.62 4.04
7865 10682 2.113807 TCTCTGGACCACATCTCCATG 58.886 52.381 0.00 0.00 37.18 3.66
7867 10684 2.303022 GTTTCTCTGGACCACATCTCCA 59.697 50.000 0.00 0.00 36.34 3.86
7874 10691 1.228657 GGCGTGTTTCTCTGGACCAC 61.229 60.000 0.00 0.00 0.00 4.16
7948 10765 2.646930 GGCATCATTGTGTCCATCTCA 58.353 47.619 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.