Multiple sequence alignment - TraesCS4D01G034100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G034100 chr4D 100.000 4384 0 0 1 4384 15551122 15555505 0.000000e+00 8096.0
1 TraesCS4D01G034100 chr4D 100.000 2947 0 0 4627 7573 15555748 15558694 0.000000e+00 5443.0
2 TraesCS4D01G034100 chr4D 93.856 651 40 0 6921 7571 242938234 242938884 0.000000e+00 981.0
3 TraesCS4D01G034100 chr4D 93.548 651 42 0 6921 7571 443841433 443840783 0.000000e+00 970.0
4 TraesCS4D01G034100 chr4D 87.029 239 28 3 1369 1606 43054307 43054543 4.500000e-67 267.0
5 TraesCS4D01G034100 chr4B 95.183 4090 137 28 337 4384 26485928 26489999 0.000000e+00 6407.0
6 TraesCS4D01G034100 chr4B 94.166 2331 83 19 4629 6923 26490059 26492372 0.000000e+00 3502.0
7 TraesCS4D01G034100 chr4B 92.553 94 4 1 35 125 373351676 373351583 1.710000e-26 132.0
8 TraesCS4D01G034100 chr4B 85.075 134 9 3 154 287 26485792 26485914 7.980000e-25 126.0
9 TraesCS4D01G034100 chr4A 92.821 4109 151 51 329 4384 585034008 585029991 0.000000e+00 5821.0
10 TraesCS4D01G034100 chr4A 93.865 2331 102 18 4634 6926 585029922 585027595 0.000000e+00 3474.0
11 TraesCS4D01G034100 chr4A 86.441 236 30 2 1369 1604 556840535 556840302 2.710000e-64 257.0
12 TraesCS4D01G034100 chr4A 96.970 99 3 0 216 314 585034210 585034112 4.700000e-37 167.0
13 TraesCS4D01G034100 chr3B 94.000 650 39 0 6922 7571 342877301 342876652 0.000000e+00 985.0
14 TraesCS4D01G034100 chr3B 93.702 651 41 0 6921 7571 275341368 275342018 0.000000e+00 976.0
15 TraesCS4D01G034100 chr5A 93.712 652 41 0 6920 7571 410512761 410512110 0.000000e+00 977.0
16 TraesCS4D01G034100 chr5A 93.702 651 41 0 6921 7571 421824520 421825170 0.000000e+00 976.0
17 TraesCS4D01G034100 chr5A 86.122 245 28 6 1369 1610 651989220 651988979 7.540000e-65 259.0
18 TraesCS4D01G034100 chr7B 93.702 651 41 0 6921 7571 469536637 469535987 0.000000e+00 976.0
19 TraesCS4D01G034100 chr7B 88.393 112 8 3 44 151 624951820 624951710 6.170000e-26 130.0
20 TraesCS4D01G034100 chr7B 83.333 102 17 0 6777 6878 30794975 30794874 2.250000e-15 95.3
21 TraesCS4D01G034100 chr7B 82.692 104 18 0 6775 6878 31464005 31463902 8.090000e-15 93.5
22 TraesCS4D01G034100 chr6A 93.548 651 42 0 6921 7571 410902244 410901594 0.000000e+00 970.0
23 TraesCS4D01G034100 chr1D 93.548 651 42 0 6921 7571 247479554 247478904 0.000000e+00 970.0
24 TraesCS4D01G034100 chr2B 88.525 244 26 2 1363 1606 216454374 216454615 2.070000e-75 294.0
25 TraesCS4D01G034100 chr2A 88.525 244 27 1 1363 1606 170458234 170458476 2.070000e-75 294.0
26 TraesCS4D01G034100 chr5B 86.920 237 31 0 1370 1606 647792685 647792449 4.500000e-67 267.0
27 TraesCS4D01G034100 chr3D 85.892 241 32 2 1369 1609 469807010 469806772 9.750000e-64 255.0
28 TraesCS4D01G034100 chr7A 88.816 152 15 2 4995 5144 148483558 148483709 1.300000e-42 185.0
29 TraesCS4D01G034100 chr7A 85.950 121 12 3 11 127 689269255 689269374 2.870000e-24 124.0
30 TraesCS4D01G034100 chrUn 92.553 94 4 1 35 125 325927174 325927267 1.710000e-26 132.0
31 TraesCS4D01G034100 chr2D 88.991 109 8 2 39 144 555911010 555911117 1.710000e-26 132.0
32 TraesCS4D01G034100 chr1A 92.553 94 4 1 35 125 272648122 272648029 1.710000e-26 132.0
33 TraesCS4D01G034100 chr6D 90.909 99 5 2 34 129 464673603 464673700 6.170000e-26 130.0
34 TraesCS4D01G034100 chr5D 90.909 99 5 2 37 132 182800832 182800929 6.170000e-26 130.0
35 TraesCS4D01G034100 chr5D 76.613 124 22 7 2260 2376 361662569 361662446 2.280000e-05 62.1
36 TraesCS4D01G034100 chr1B 90.099 101 6 2 36 132 681293854 681293954 2.220000e-25 128.0
37 TraesCS4D01G034100 chr7D 81.905 105 13 3 6777 6878 82462481 82462380 4.870000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G034100 chr4D 15551122 15558694 7572 False 6769.5 8096 100.000000 1 7573 2 chr4D.!!$F3 7572
1 TraesCS4D01G034100 chr4D 242938234 242938884 650 False 981.0 981 93.856000 6921 7571 1 chr4D.!!$F2 650
2 TraesCS4D01G034100 chr4D 443840783 443841433 650 True 970.0 970 93.548000 6921 7571 1 chr4D.!!$R1 650
3 TraesCS4D01G034100 chr4B 26485792 26492372 6580 False 3345.0 6407 91.474667 154 6923 3 chr4B.!!$F1 6769
4 TraesCS4D01G034100 chr4A 585027595 585034210 6615 True 3154.0 5821 94.552000 216 6926 3 chr4A.!!$R2 6710
5 TraesCS4D01G034100 chr3B 342876652 342877301 649 True 985.0 985 94.000000 6922 7571 1 chr3B.!!$R1 649
6 TraesCS4D01G034100 chr3B 275341368 275342018 650 False 976.0 976 93.702000 6921 7571 1 chr3B.!!$F1 650
7 TraesCS4D01G034100 chr5A 410512110 410512761 651 True 977.0 977 93.712000 6920 7571 1 chr5A.!!$R1 651
8 TraesCS4D01G034100 chr5A 421824520 421825170 650 False 976.0 976 93.702000 6921 7571 1 chr5A.!!$F1 650
9 TraesCS4D01G034100 chr7B 469535987 469536637 650 True 976.0 976 93.702000 6921 7571 1 chr7B.!!$R3 650
10 TraesCS4D01G034100 chr6A 410901594 410902244 650 True 970.0 970 93.548000 6921 7571 1 chr6A.!!$R1 650
11 TraesCS4D01G034100 chr1D 247478904 247479554 650 True 970.0 970 93.548000 6921 7571 1 chr1D.!!$R1 650

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
609 727 0.407139 AGCAAGGCTCAGATGGGTTT 59.593 50.000 0.00 0.0 30.62 3.27 F
697 817 0.595095 GGAACACTGCTTCTGCTTGG 59.405 55.000 0.00 0.0 40.48 3.61 F
1390 1543 0.822164 ACCTCCGTCCTGGTTTATCG 59.178 55.000 0.00 0.0 39.52 2.92 F
2730 2903 1.021202 TGGTTTCCGTGCAAGTTCTG 58.979 50.000 0.00 0.0 0.00 3.02 F
2734 2907 1.581934 TTCCGTGCAAGTTCTGTGAG 58.418 50.000 0.00 0.0 0.00 3.51 F
4022 4199 1.471676 GCCTTGATAGTCCGTGTCCTG 60.472 57.143 0.00 0.0 0.00 3.86 F
5614 5815 0.817229 GGGCTTATCTGCAGGCTGTC 60.817 60.000 17.16 9.1 37.02 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1749 1905 2.855963 GCAATCAAATCGATGTTGCCTG 59.144 45.455 19.21 15.30 33.47 4.85 R
2426 2595 4.768448 TCTCTCCGTACATGTAAACTTCCA 59.232 41.667 7.25 0.00 0.00 3.53 R
3293 3470 1.270550 GGGTGGCAGACTTGTGAATTG 59.729 52.381 0.00 0.00 0.00 2.32 R
4001 4178 0.535335 GGACACGGACTATCAAGGCA 59.465 55.000 0.00 0.00 29.10 4.75 R
4263 4440 2.393646 GCCTAGGAAGTGGTCTCAGAT 58.606 52.381 14.75 0.00 0.00 2.90 R
5864 6068 0.242825 GGTTGGTTAGAAAAGCCGGC 59.757 55.000 21.89 21.89 31.91 6.13 R
7229 7448 0.248498 ACATACGCATCTCCGTCACG 60.248 55.000 0.00 0.00 42.20 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 5.632034 ATCCAACATTTACTACTCCCTCC 57.368 43.478 0.00 0.00 0.00 4.30
53 54 3.449737 TCCAACATTTACTACTCCCTCCG 59.550 47.826 0.00 0.00 0.00 4.63
54 55 3.197116 CCAACATTTACTACTCCCTCCGT 59.803 47.826 0.00 0.00 0.00 4.69
55 56 4.403432 CCAACATTTACTACTCCCTCCGTA 59.597 45.833 0.00 0.00 0.00 4.02
56 57 5.105228 CCAACATTTACTACTCCCTCCGTAA 60.105 44.000 0.00 0.00 0.00 3.18
57 58 6.400568 CAACATTTACTACTCCCTCCGTAAA 58.599 40.000 0.00 0.00 36.59 2.01
58 59 5.970592 ACATTTACTACTCCCTCCGTAAAC 58.029 41.667 0.00 0.00 35.45 2.01
59 60 5.718607 ACATTTACTACTCCCTCCGTAAACT 59.281 40.000 0.00 0.00 35.45 2.66
60 61 6.891908 ACATTTACTACTCCCTCCGTAAACTA 59.108 38.462 0.00 0.00 35.45 2.24
61 62 7.562821 ACATTTACTACTCCCTCCGTAAACTAT 59.437 37.037 0.00 0.00 35.45 2.12
62 63 9.071276 CATTTACTACTCCCTCCGTAAACTATA 57.929 37.037 0.00 0.00 35.45 1.31
63 64 9.646522 ATTTACTACTCCCTCCGTAAACTATAA 57.353 33.333 0.00 0.00 35.45 0.98
64 65 8.682936 TTACTACTCCCTCCGTAAACTATAAG 57.317 38.462 0.00 0.00 0.00 1.73
65 66 6.904626 ACTACTCCCTCCGTAAACTATAAGA 58.095 40.000 0.00 0.00 0.00 2.10
66 67 6.997476 ACTACTCCCTCCGTAAACTATAAGAG 59.003 42.308 0.00 0.00 0.00 2.85
67 68 5.764432 ACTCCCTCCGTAAACTATAAGAGT 58.236 41.667 0.00 0.00 41.56 3.24
68 69 5.593502 ACTCCCTCCGTAAACTATAAGAGTG 59.406 44.000 0.00 0.00 38.87 3.51
69 70 5.513233 TCCCTCCGTAAACTATAAGAGTGT 58.487 41.667 0.00 0.00 38.87 3.55
70 71 5.954150 TCCCTCCGTAAACTATAAGAGTGTT 59.046 40.000 0.00 0.00 38.87 3.32
71 72 6.438425 TCCCTCCGTAAACTATAAGAGTGTTT 59.562 38.462 0.00 0.00 38.87 2.83
72 73 7.615365 TCCCTCCGTAAACTATAAGAGTGTTTA 59.385 37.037 0.00 0.00 38.87 2.01
73 74 7.919621 CCCTCCGTAAACTATAAGAGTGTTTAG 59.080 40.741 0.00 0.00 38.87 1.85
74 75 8.680903 CCTCCGTAAACTATAAGAGTGTTTAGA 58.319 37.037 0.00 0.00 38.87 2.10
119 120 9.915629 AAACGCTCTTATATTATCTTACAGAGG 57.084 33.333 0.00 0.00 0.00 3.69
120 121 8.057536 ACGCTCTTATATTATCTTACAGAGGG 57.942 38.462 8.36 8.36 42.53 4.30
121 122 7.889073 ACGCTCTTATATTATCTTACAGAGGGA 59.111 37.037 14.96 0.00 40.49 4.20
122 123 8.402472 CGCTCTTATATTATCTTACAGAGGGAG 58.598 40.741 4.76 0.00 40.49 4.30
123 124 9.250246 GCTCTTATATTATCTTACAGAGGGAGT 57.750 37.037 0.00 0.00 0.00 3.85
163 164 8.856247 GCCCTTTGTATATAAAAAGTGAAAACG 58.144 33.333 19.62 6.62 32.57 3.60
168 169 9.881529 TTGTATATAAAAAGTGAAAACGGTCAC 57.118 29.630 7.79 7.79 46.90 3.67
176 177 2.020720 TGAAAACGGTCACAATGCTGT 58.979 42.857 0.00 0.00 35.63 4.40
190 191 6.017934 TCACAATGCTGTTTAAGTCACTCTTC 60.018 38.462 0.00 0.00 33.95 2.87
191 192 6.017605 CACAATGCTGTTTAAGTCACTCTTCT 60.018 38.462 0.00 0.00 33.95 2.85
192 193 6.543831 ACAATGCTGTTTAAGTCACTCTTCTT 59.456 34.615 0.00 0.00 33.06 2.52
193 194 6.793492 ATGCTGTTTAAGTCACTCTTCTTC 57.207 37.500 0.00 0.00 37.56 2.87
194 195 5.670485 TGCTGTTTAAGTCACTCTTCTTCA 58.330 37.500 0.00 0.00 37.56 3.02
195 196 5.523916 TGCTGTTTAAGTCACTCTTCTTCAC 59.476 40.000 0.00 0.00 37.56 3.18
204 205 7.956174 TAAGTCACTCTTCTTCACCATTCTTGG 60.956 40.741 0.00 0.00 41.80 3.61
420 521 0.460311 CATAACTCCTCGGTCGGCTT 59.540 55.000 0.00 0.00 0.00 4.35
606 724 1.453379 CCAGCAAGGCTCAGATGGG 60.453 63.158 14.37 0.00 36.40 4.00
609 727 0.407139 AGCAAGGCTCAGATGGGTTT 59.593 50.000 0.00 0.00 30.62 3.27
611 729 1.615384 GCAAGGCTCAGATGGGTTTCT 60.615 52.381 0.00 0.00 0.00 2.52
694 814 0.761187 TCTGGAACACTGCTTCTGCT 59.239 50.000 0.00 0.00 40.48 4.24
695 815 1.141657 TCTGGAACACTGCTTCTGCTT 59.858 47.619 0.00 0.00 40.48 3.91
696 816 1.266175 CTGGAACACTGCTTCTGCTTG 59.734 52.381 0.00 0.00 40.48 4.01
697 817 0.595095 GGAACACTGCTTCTGCTTGG 59.405 55.000 0.00 0.00 40.48 3.61
698 818 1.597742 GAACACTGCTTCTGCTTGGA 58.402 50.000 0.00 0.00 40.48 3.53
711 831 5.128033 TCTGCTTGGATTGGATTGGATTA 57.872 39.130 0.00 0.00 0.00 1.75
727 847 6.762702 TTGGATTAGATTTCCCGTTTTACC 57.237 37.500 0.00 0.00 31.87 2.85
815 939 1.841302 TTTCCACCTCAGGAGCGCAT 61.841 55.000 11.47 0.00 39.25 4.73
884 1013 4.106341 TCCTTTCTTTCTGTGGGGATCTTT 59.894 41.667 0.00 0.00 0.00 2.52
885 1014 5.312178 TCCTTTCTTTCTGTGGGGATCTTTA 59.688 40.000 0.00 0.00 0.00 1.85
925 1054 8.557029 GGATTCTATATTCGTTTGATCGGTTTT 58.443 33.333 0.00 0.00 0.00 2.43
1056 1207 1.754745 TCTGGACAAGACACTGGCC 59.245 57.895 0.00 0.00 45.82 5.36
1088 1239 2.046864 CCGACGAGGGCTCTCTGAA 61.047 63.158 12.81 0.00 37.86 3.02
1200 1352 9.431887 CTTTGGTTAGCTAGTTCATTTGTACTA 57.568 33.333 0.00 0.00 0.00 1.82
1213 1365 9.649167 GTTCATTTGTACTACACCACTAATAGT 57.351 33.333 0.00 0.00 33.73 2.12
1294 1446 7.564793 AGTTTTTCCATTGCTAAATATTCCCC 58.435 34.615 0.00 0.00 0.00 4.81
1355 1507 8.110002 GCTGGTTGAATTTAAAGATTAAATGCG 58.890 33.333 8.41 0.00 0.00 4.73
1390 1543 0.822164 ACCTCCGTCCTGGTTTATCG 59.178 55.000 0.00 0.00 39.52 2.92
1509 1663 7.477144 TGAACATAGTTGCCGACAATATTAG 57.523 36.000 0.00 0.00 38.27 1.73
1674 1830 5.529060 GTGATCTGTATCTTCCCATCCAAAC 59.471 44.000 0.00 0.00 32.93 2.93
1719 1875 5.950544 TTCTATACCAGCCTACATGTGTT 57.049 39.130 9.11 0.00 0.00 3.32
1721 1877 6.308015 TCTATACCAGCCTACATGTGTTTT 57.692 37.500 9.11 0.00 0.00 2.43
1749 1905 5.418840 TCTCATTTTGGGTTATGCCTTCTTC 59.581 40.000 0.00 0.00 37.43 2.87
1843 1999 1.740025 GGAAATGAACGGCCTTCAGAG 59.260 52.381 18.43 0.00 42.36 3.35
2106 2263 3.879998 GGTGACAACCAAAACCCAAAAT 58.120 40.909 0.00 0.00 46.75 1.82
2122 2279 8.716646 AACCCAAAATAGAAAAACAGAAACAG 57.283 30.769 0.00 0.00 0.00 3.16
2185 2343 3.333680 ACCAAAAAGGAGAGGGATAAGCA 59.666 43.478 0.00 0.00 41.22 3.91
2290 2458 5.981088 AACATTGATGCATGTTTCACCTA 57.019 34.783 2.46 0.00 37.71 3.08
2303 2471 5.911752 TGTTTCACCTATGTGCAATGTTTT 58.088 33.333 0.00 0.00 42.46 2.43
2388 2557 8.253810 TGTGAAAACATTTTGGAACACAGATTA 58.746 29.630 0.00 0.00 39.29 1.75
2409 2578 3.811031 TTTTTGCCCAGACCTCGAA 57.189 47.368 0.00 0.00 0.00 3.71
2426 2595 6.180472 ACCTCGAAGAATGTTATTTCACCAT 58.820 36.000 0.00 0.00 34.09 3.55
2730 2903 1.021202 TGGTTTCCGTGCAAGTTCTG 58.979 50.000 0.00 0.00 0.00 3.02
2734 2907 1.581934 TTCCGTGCAAGTTCTGTGAG 58.418 50.000 0.00 0.00 0.00 3.51
2737 2910 2.101750 TCCGTGCAAGTTCTGTGAGTTA 59.898 45.455 0.00 0.00 0.00 2.24
2738 2911 3.067106 CCGTGCAAGTTCTGTGAGTTAT 58.933 45.455 0.00 0.00 0.00 1.89
2902 3075 5.948842 AGGAACTATAACCCCGCATTAATT 58.051 37.500 0.00 0.00 36.02 1.40
2990 3163 5.070446 TGTCATGGGAATCAGGTCTATACAC 59.930 44.000 0.00 0.00 0.00 2.90
3266 3443 9.615660 TTTATGCTATTAGAATCCTCCTCCTTA 57.384 33.333 0.00 0.00 0.00 2.69
3267 3444 9.615660 TTATGCTATTAGAATCCTCCTCCTTAA 57.384 33.333 0.00 0.00 0.00 1.85
3268 3445 8.692682 ATGCTATTAGAATCCTCCTCCTTAAT 57.307 34.615 0.00 0.00 0.00 1.40
3275 3452 9.690446 TTAGAATCCTCCTCCTTAATATTCCTT 57.310 33.333 0.00 0.00 0.00 3.36
3424 3601 9.642327 TGATTTGACAAGACATCATAAAATTGG 57.358 29.630 0.00 0.00 0.00 3.16
3549 3726 2.747446 ACGTGATGCTCCATGTTTTACC 59.253 45.455 0.00 0.00 32.78 2.85
3593 3770 6.545666 TGGTGTACTTGAACATTGAAGTCAAT 59.454 34.615 0.00 0.54 46.62 2.57
4022 4199 1.471676 GCCTTGATAGTCCGTGTCCTG 60.472 57.143 0.00 0.00 0.00 3.86
4237 4414 5.468409 TGCATTTCGACAACTGATAACTCAA 59.532 36.000 0.00 0.00 0.00 3.02
4263 4440 5.600069 ACTGAGATAGAGCACCATATGTCAA 59.400 40.000 1.24 0.00 33.00 3.18
4293 4470 4.291249 ACCACTTCCTAGGCCTTTGAAATA 59.709 41.667 12.58 0.00 0.00 1.40
4300 4477 1.812571 AGGCCTTTGAAATAGTGCACG 59.187 47.619 12.01 0.00 0.00 5.34
4335 4512 5.221803 ACAAAACCAATCAATATGGCAACCA 60.222 36.000 0.00 0.00 41.89 3.67
4361 4538 4.021456 TCAGACGAGTATTGTTGTGGATGT 60.021 41.667 0.00 0.00 28.27 3.06
4672 4856 2.100749 GCCTGCTTGGTTTTGTACTTGT 59.899 45.455 0.00 0.00 38.35 3.16
4754 4940 4.580167 ACAAGCTCATAAACAGTCTGCAAA 59.420 37.500 0.00 0.00 0.00 3.68
4827 5013 7.331193 GGCCTAACTAGGATATGAACATTTACG 59.669 40.741 6.98 0.00 46.63 3.18
4885 5071 8.853126 CATGAGATAACAACCATGGACATATTT 58.147 33.333 21.47 6.55 34.39 1.40
4886 5072 8.224389 TGAGATAACAACCATGGACATATTTG 57.776 34.615 21.47 13.73 0.00 2.32
4887 5073 7.042797 AGATAACAACCATGGACATATTTGC 57.957 36.000 21.47 0.00 0.00 3.68
4889 5075 5.480642 AACAACCATGGACATATTTGCAA 57.519 34.783 21.47 0.00 0.00 4.08
4890 5076 5.680594 ACAACCATGGACATATTTGCAAT 57.319 34.783 21.47 0.00 0.00 3.56
4925 5121 1.002990 TACCACCGACTCTCGCTCA 60.003 57.895 0.00 0.00 38.82 4.26
4970 5166 5.902431 AGACTGGACATAAGGATTAAGCTCT 59.098 40.000 0.00 0.00 32.17 4.09
5096 5294 7.345691 TCCATGAGGTTTCATCTAATGCTAAA 58.654 34.615 0.00 0.00 42.12 1.85
5553 5754 9.810545 TCATGTGATACTTTATGTCGAATAACA 57.189 29.630 0.00 0.00 0.00 2.41
5583 5784 5.694006 CGGGAGAGAAATATGCTCTGTTAAG 59.306 44.000 11.84 0.00 42.50 1.85
5614 5815 0.817229 GGGCTTATCTGCAGGCTGTC 60.817 60.000 17.16 9.10 37.02 3.51
5752 5953 2.695314 CGCTAATGAAGTGCTCCCC 58.305 57.895 0.00 0.00 0.00 4.81
5864 6068 7.630242 TCTTTTAAGGTGGATAATCTTGCAG 57.370 36.000 0.00 0.00 0.00 4.41
6016 6220 1.886222 GCTTTGGGCATACTGGACACA 60.886 52.381 0.00 0.00 41.35 3.72
6059 6263 4.154737 GCAACAGATCTGCAAACATCAGTA 59.845 41.667 22.83 0.00 39.69 2.74
6088 6292 2.522836 AGCTCCTCAGTTATGATGCG 57.477 50.000 0.00 0.00 34.12 4.73
6089 6293 1.069823 AGCTCCTCAGTTATGATGCGG 59.930 52.381 0.00 0.00 34.12 5.69
6169 6373 6.496911 TCGATACAGATAATCTCCCAAATGGA 59.503 38.462 0.00 0.00 42.41 3.41
6185 6389 3.498774 ATGGATATCCTCTTGCCACAC 57.501 47.619 22.35 0.00 36.82 3.82
6213 6426 6.649973 CCTCATGATTCAAGGTGAGATATGAC 59.350 42.308 14.54 0.00 40.30 3.06
6252 6467 4.630894 TTGTGTTTCAGTTGATGGTCAC 57.369 40.909 0.00 0.00 0.00 3.67
6339 6554 5.130477 ACTTATTTCTTGCCCGATAAGGAGA 59.870 40.000 0.00 0.00 45.00 3.71
6403 6618 2.094762 AACATGACCGCTTCTACCAC 57.905 50.000 0.00 0.00 0.00 4.16
6410 6625 0.038526 CCGCTTCTACCACAACGACT 60.039 55.000 0.00 0.00 0.00 4.18
6440 6655 4.641541 TCCATGACATTAAGGAGCACAATG 59.358 41.667 0.00 0.00 36.07 2.82
6523 6738 2.157738 CAAAGAGCCCAAGAGACCAAG 58.842 52.381 0.00 0.00 0.00 3.61
6655 6872 1.478510 AGACGAGCTACACAAGATGGG 59.521 52.381 0.00 0.00 0.00 4.00
6848 7066 2.057922 TGAGAGAGAAGGTTTTGGGCT 58.942 47.619 0.00 0.00 0.00 5.19
6855 7073 2.597510 GGTTTTGGGCTCCGCAGT 60.598 61.111 0.00 0.00 0.00 4.40
6856 7074 2.644992 GTTTTGGGCTCCGCAGTG 59.355 61.111 0.00 0.00 0.00 3.66
6888 7107 8.697067 CACTTTAACAGATGATTTGCTCAAAAG 58.303 33.333 0.00 0.00 37.44 2.27
6947 7166 6.717997 TGATGTGTGGTTTCAGTACTACTAGA 59.282 38.462 0.00 0.00 31.51 2.43
7014 7233 5.874810 CAGAAGGACACCTTTCGATATTTGA 59.125 40.000 4.51 0.00 44.82 2.69
7034 7253 1.028868 GGTCAATGCTGCAGGAGGAC 61.029 60.000 25.20 25.20 0.00 3.85
7081 7300 4.913376 CATCGAATCAAAGTTGGATGGAC 58.087 43.478 0.00 0.00 39.31 4.02
7128 7347 1.342496 TCTGTGACAAGAGAGTGCCAG 59.658 52.381 0.00 0.00 0.00 4.85
7130 7349 1.973515 TGTGACAAGAGAGTGCCAGAT 59.026 47.619 0.00 0.00 0.00 2.90
7134 7353 3.834813 TGACAAGAGAGTGCCAGATAAGT 59.165 43.478 0.00 0.00 0.00 2.24
7183 7402 1.066787 TCGACCCGCAATGTTGTATGA 60.067 47.619 0.00 0.00 0.00 2.15
7208 7427 2.103432 TGAGTGTTGGCCGACTAAAAGA 59.897 45.455 23.87 0.00 0.00 2.52
7214 7433 1.066136 GGCCGACTAAAAGACGACAC 58.934 55.000 0.00 0.00 35.52 3.67
7229 7448 1.191647 CGACACGTTCAACAGTTAGGC 59.808 52.381 0.00 0.00 0.00 3.93
7250 7469 2.540157 CGTGACGGAGATGCGTATGTTA 60.540 50.000 0.00 0.00 0.00 2.41
7263 7482 5.182487 TGCGTATGTTAAGATGGATGTGTT 58.818 37.500 0.00 0.00 0.00 3.32
7306 7525 5.955488 AGTTCGGAATGATGATATACGAGG 58.045 41.667 0.00 0.00 0.00 4.63
7413 7632 2.184322 CAGTGCATAGCGGACGGT 59.816 61.111 1.06 1.06 41.69 4.83
7445 7664 1.825474 GGGAATGTCAAGAGAGGTCGA 59.175 52.381 0.00 0.00 0.00 4.20
7467 7686 5.624509 CGAGGTAGACTGAATTTGACATGGA 60.625 44.000 0.00 0.00 0.00 3.41
7468 7687 5.491982 AGGTAGACTGAATTTGACATGGAC 58.508 41.667 0.00 0.00 0.00 4.02
7512 7731 9.341178 ACCTGAAGGATTGGAGTATCACCAAAA 62.341 40.741 2.62 0.00 43.17 2.44
7533 7752 3.700863 AACTAGCTATGGACAGGGGTA 57.299 47.619 0.00 0.00 0.00 3.69
7545 7764 2.504175 GACAGGGGTATGTGGAAGCTTA 59.496 50.000 0.00 0.00 32.25 3.09
7571 7790 0.393944 ATGTGCCAGAGCCATGAGTG 60.394 55.000 0.00 0.00 38.69 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.218488 GGAGGGAGTAGTAAATGTTGGATATTT 58.782 37.037 0.00 0.00 0.00 1.40
27 28 7.472945 CGGAGGGAGTAGTAAATGTTGGATATT 60.473 40.741 0.00 0.00 0.00 1.28
28 29 6.014499 CGGAGGGAGTAGTAAATGTTGGATAT 60.014 42.308 0.00 0.00 0.00 1.63
29 30 5.303589 CGGAGGGAGTAGTAAATGTTGGATA 59.696 44.000 0.00 0.00 0.00 2.59
30 31 4.101119 CGGAGGGAGTAGTAAATGTTGGAT 59.899 45.833 0.00 0.00 0.00 3.41
31 32 3.449737 CGGAGGGAGTAGTAAATGTTGGA 59.550 47.826 0.00 0.00 0.00 3.53
32 33 3.197116 ACGGAGGGAGTAGTAAATGTTGG 59.803 47.826 0.00 0.00 0.00 3.77
33 34 4.467198 ACGGAGGGAGTAGTAAATGTTG 57.533 45.455 0.00 0.00 0.00 3.33
34 35 6.212187 AGTTTACGGAGGGAGTAGTAAATGTT 59.788 38.462 3.48 0.00 39.98 2.71
35 36 5.718607 AGTTTACGGAGGGAGTAGTAAATGT 59.281 40.000 3.48 0.00 39.98 2.71
36 37 6.218108 AGTTTACGGAGGGAGTAGTAAATG 57.782 41.667 3.48 0.00 39.98 2.32
37 38 9.646522 TTATAGTTTACGGAGGGAGTAGTAAAT 57.353 33.333 3.48 0.00 39.98 1.40
38 39 9.125026 CTTATAGTTTACGGAGGGAGTAGTAAA 57.875 37.037 0.00 0.00 36.91 2.01
39 40 8.494433 TCTTATAGTTTACGGAGGGAGTAGTAA 58.506 37.037 0.00 0.00 0.00 2.24
40 41 8.034313 TCTTATAGTTTACGGAGGGAGTAGTA 57.966 38.462 0.00 0.00 0.00 1.82
41 42 6.904626 TCTTATAGTTTACGGAGGGAGTAGT 58.095 40.000 0.00 0.00 0.00 2.73
42 43 6.997476 ACTCTTATAGTTTACGGAGGGAGTAG 59.003 42.308 0.00 0.00 33.35 2.57
43 44 6.769822 CACTCTTATAGTTTACGGAGGGAGTA 59.230 42.308 0.00 0.00 35.76 2.59
44 45 5.593502 CACTCTTATAGTTTACGGAGGGAGT 59.406 44.000 0.00 0.00 35.76 3.85
45 46 5.593502 ACACTCTTATAGTTTACGGAGGGAG 59.406 44.000 0.00 0.00 35.76 4.30
46 47 5.513233 ACACTCTTATAGTTTACGGAGGGA 58.487 41.667 0.00 0.00 35.76 4.20
47 48 5.848833 ACACTCTTATAGTTTACGGAGGG 57.151 43.478 0.00 0.00 35.76 4.30
48 49 8.680903 TCTAAACACTCTTATAGTTTACGGAGG 58.319 37.037 0.00 0.00 35.76 4.30
93 94 9.915629 CCTCTGTAAGATAATATAAGAGCGTTT 57.084 33.333 0.00 0.00 45.62 3.60
94 95 8.524487 CCCTCTGTAAGATAATATAAGAGCGTT 58.476 37.037 0.00 0.00 45.62 4.84
95 96 7.889073 TCCCTCTGTAAGATAATATAAGAGCGT 59.111 37.037 0.00 0.00 45.62 5.07
96 97 8.282455 TCCCTCTGTAAGATAATATAAGAGCG 57.718 38.462 0.00 0.00 45.62 5.03
97 98 9.250246 ACTCCCTCTGTAAGATAATATAAGAGC 57.750 37.037 0.00 0.00 45.62 4.09
136 137 9.699703 GTTTTCACTTTTTATATACAAAGGGCA 57.300 29.630 20.26 8.57 33.99 5.36
137 138 8.856247 CGTTTTCACTTTTTATATACAAAGGGC 58.144 33.333 20.26 7.32 33.99 5.19
138 139 9.349145 CCGTTTTCACTTTTTATATACAAAGGG 57.651 33.333 20.26 17.71 35.10 3.95
139 140 9.902196 ACCGTTTTCACTTTTTATATACAAAGG 57.098 29.630 20.26 12.11 34.77 3.11
142 143 9.881529 GTGACCGTTTTCACTTTTTATATACAA 57.118 29.630 2.64 0.00 42.36 2.41
143 144 9.053840 TGTGACCGTTTTCACTTTTTATATACA 57.946 29.630 9.63 0.00 45.34 2.29
144 145 9.881529 TTGTGACCGTTTTCACTTTTTATATAC 57.118 29.630 9.63 0.00 45.34 1.47
146 147 9.405587 CATTGTGACCGTTTTCACTTTTTATAT 57.594 29.630 9.63 0.00 45.34 0.86
147 148 7.380065 GCATTGTGACCGTTTTCACTTTTTATA 59.620 33.333 9.63 0.00 45.34 0.98
148 149 6.200097 GCATTGTGACCGTTTTCACTTTTTAT 59.800 34.615 9.63 0.00 45.34 1.40
149 150 5.517054 GCATTGTGACCGTTTTCACTTTTTA 59.483 36.000 9.63 0.00 45.34 1.52
150 151 4.328712 GCATTGTGACCGTTTTCACTTTTT 59.671 37.500 9.63 0.00 45.34 1.94
151 152 3.862845 GCATTGTGACCGTTTTCACTTTT 59.137 39.130 9.63 0.00 45.34 2.27
152 153 3.130340 AGCATTGTGACCGTTTTCACTTT 59.870 39.130 9.63 0.00 45.34 2.66
156 157 2.020720 ACAGCATTGTGACCGTTTTCA 58.979 42.857 0.00 0.00 35.83 2.69
163 164 4.275936 AGTGACTTAAACAGCATTGTGACC 59.724 41.667 0.00 0.00 37.67 4.02
168 169 6.551385 AGAAGAGTGACTTAAACAGCATTG 57.449 37.500 0.00 0.00 39.13 2.82
169 170 6.767902 TGAAGAAGAGTGACTTAAACAGCATT 59.232 34.615 0.00 0.00 39.13 3.56
170 171 6.203723 GTGAAGAAGAGTGACTTAAACAGCAT 59.796 38.462 0.00 0.00 39.13 3.79
176 177 7.509546 AGAATGGTGAAGAAGAGTGACTTAAA 58.490 34.615 0.00 0.00 39.13 1.52
606 724 6.737254 TGGACTGGATCGAAATTAAGAAAC 57.263 37.500 0.00 0.00 0.00 2.78
609 727 6.283694 CAGATGGACTGGATCGAAATTAAGA 58.716 40.000 0.00 0.00 42.39 2.10
660 780 1.348696 TCCAGATGCAGAACAGAGCAA 59.651 47.619 0.00 0.00 44.88 3.91
694 814 6.554605 GGGAAATCTAATCCAATCCAATCCAA 59.445 38.462 0.00 0.00 38.80 3.53
695 815 6.077322 GGGAAATCTAATCCAATCCAATCCA 58.923 40.000 0.00 0.00 38.80 3.41
696 816 5.183904 CGGGAAATCTAATCCAATCCAATCC 59.816 44.000 0.00 0.00 38.80 3.01
697 817 5.770162 ACGGGAAATCTAATCCAATCCAATC 59.230 40.000 0.00 0.00 38.80 2.67
698 818 5.705400 ACGGGAAATCTAATCCAATCCAAT 58.295 37.500 0.00 0.00 38.80 3.16
711 831 3.824443 CCAACAGGTAAAACGGGAAATCT 59.176 43.478 0.00 0.00 0.00 2.40
815 939 7.781324 AGAAAGGAAAGAATCATTAAAGGCA 57.219 32.000 0.00 0.00 30.47 4.75
884 1013 0.885879 AATCCACACGACACGAGCTA 59.114 50.000 0.00 0.00 0.00 3.32
885 1014 0.388649 GAATCCACACGACACGAGCT 60.389 55.000 0.00 0.00 0.00 4.09
925 1054 6.566197 AAATTGCAAAACTTGTCCAAAACA 57.434 29.167 1.71 0.00 35.59 2.83
944 1073 5.596836 TGAGAGCTTTGACAACCAAAATT 57.403 34.783 0.00 0.00 43.50 1.82
1050 1201 1.674764 CGAGATCAGAGCAGGCCAGT 61.675 60.000 5.01 0.00 0.00 4.00
1056 1207 1.299014 GTCGGCGAGATCAGAGCAG 60.299 63.158 11.20 5.44 0.00 4.24
1355 1507 4.038162 ACGGAGGTAGTGCTATTGAATCTC 59.962 45.833 0.00 0.00 0.00 2.75
1367 1520 0.974383 AAACCAGGACGGAGGTAGTG 59.026 55.000 0.00 0.00 37.07 2.74
1488 1641 7.859325 AAACTAATATTGTCGGCAACTATGT 57.141 32.000 3.66 0.00 37.44 2.29
1655 1811 4.096984 GCAAGTTTGGATGGGAAGATACAG 59.903 45.833 0.00 0.00 0.00 2.74
1674 1830 8.675504 AGAAATGAATCTACAATGAGAAGCAAG 58.324 33.333 0.00 0.00 0.00 4.01
1721 1877 6.432403 AGGCATAACCCAAAATGAGAAAAA 57.568 33.333 0.00 0.00 40.58 1.94
1726 1882 5.185635 TGAAGAAGGCATAACCCAAAATGAG 59.814 40.000 0.00 0.00 40.58 2.90
1749 1905 2.855963 GCAATCAAATCGATGTTGCCTG 59.144 45.455 19.21 15.30 33.47 4.85
1916 2072 7.374228 GCACATTCTAATCACATAATGTTCACG 59.626 37.037 0.00 0.00 39.80 4.35
2122 2279 9.165014 GTTCCTGTTTTGTTTTTCTTTTGTTTC 57.835 29.630 0.00 0.00 0.00 2.78
2281 2449 5.752955 ACAAAACATTGCACATAGGTGAAAC 59.247 36.000 12.53 0.00 45.26 2.78
2290 2458 6.981762 TTTTCTTCACAAAACATTGCACAT 57.018 29.167 0.00 0.00 0.00 3.21
2409 2578 7.781324 AACTTCCATGGTGAAATAACATTCT 57.219 32.000 12.58 0.00 0.00 2.40
2426 2595 4.768448 TCTCTCCGTACATGTAAACTTCCA 59.232 41.667 7.25 0.00 0.00 3.53
2730 2903 9.651718 GAATTACCGATCATTCAAATAACTCAC 57.348 33.333 0.00 0.00 30.84 3.51
2990 3163 8.195617 ACAAAACAATTACACTCACCATTTTG 57.804 30.769 0.00 0.00 39.33 2.44
3293 3470 1.270550 GGGTGGCAGACTTGTGAATTG 59.729 52.381 0.00 0.00 0.00 2.32
3424 3601 9.349713 TCCAATCATTATATACTGGGTGAAAAC 57.650 33.333 0.70 0.00 0.00 2.43
3514 3691 4.330894 AGCATCACGTATGAATCAACACTG 59.669 41.667 8.57 0.00 38.69 3.66
3549 3726 2.606795 CCACGGGCAACATGTTTACTTG 60.607 50.000 8.77 5.97 39.74 3.16
3593 3770 2.370349 TGTTGTTTTCTTTGGCCGAGA 58.630 42.857 4.62 4.62 0.00 4.04
3948 4125 4.072131 ACCTACGCACAGTTTTCATGATT 58.928 39.130 0.00 0.00 0.00 2.57
4001 4178 0.535335 GGACACGGACTATCAAGGCA 59.465 55.000 0.00 0.00 29.10 4.75
4022 4199 9.908152 AGTCAATAAGCAGTAAATAAACAAACC 57.092 29.630 0.00 0.00 0.00 3.27
4237 4414 6.098838 TGACATATGGTGCTCTATCTCAGTTT 59.901 38.462 7.80 0.00 0.00 2.66
4263 4440 2.393646 GCCTAGGAAGTGGTCTCAGAT 58.606 52.381 14.75 0.00 0.00 2.90
4293 4470 2.766313 TGTGAAAAGATAGCGTGCACT 58.234 42.857 16.19 0.00 0.00 4.40
4300 4477 7.945033 TTGATTGGTTTTGTGAAAAGATAGC 57.055 32.000 0.00 0.00 0.00 2.97
4335 4512 5.547465 TCCACAACAATACTCGTCTGAAAT 58.453 37.500 0.00 0.00 0.00 2.17
4741 4927 1.761784 TGCCCATTTTGCAGACTGTTT 59.238 42.857 3.99 0.00 34.05 2.83
4754 4940 2.951642 CGATTGTTACCTCATGCCCATT 59.048 45.455 0.00 0.00 0.00 3.16
4827 5013 2.749441 GAGTTGGCAGCAGGCTCC 60.749 66.667 3.63 0.00 44.01 4.70
4885 5071 2.436417 GCTCAGTAAAGTGGGATTGCA 58.564 47.619 0.00 0.00 0.00 4.08
4886 5072 1.745653 GGCTCAGTAAAGTGGGATTGC 59.254 52.381 0.00 0.00 0.00 3.56
4887 5073 3.356529 AGGCTCAGTAAAGTGGGATTG 57.643 47.619 0.00 0.00 0.00 2.67
4889 5075 2.772515 GGTAGGCTCAGTAAAGTGGGAT 59.227 50.000 0.00 0.00 0.00 3.85
4890 5076 2.185387 GGTAGGCTCAGTAAAGTGGGA 58.815 52.381 0.00 0.00 0.00 4.37
4925 5121 0.255890 GCCCTGGTGTGTGATGGTAT 59.744 55.000 0.00 0.00 0.00 2.73
4987 5183 9.854668 TTGATTTGGAAATCCTATAACCGAATA 57.145 29.630 9.16 0.00 43.19 1.75
4997 5193 9.934784 TCATATTCCTTTGATTTGGAAATCCTA 57.065 29.630 9.16 0.00 44.34 2.94
5021 5217 5.385198 GGCATCCCAATCCTATACTTTTCA 58.615 41.667 0.00 0.00 0.00 2.69
5292 5492 8.378172 TGAGTGATTAGGTTAAAAGTGAAGTG 57.622 34.615 0.00 0.00 0.00 3.16
5553 5754 3.392616 AGCATATTTCTCTCCCGGACATT 59.607 43.478 0.73 0.00 0.00 2.71
5583 5784 5.530915 TGCAGATAAGCCCATACACAATTAC 59.469 40.000 0.00 0.00 0.00 1.89
5614 5815 1.301716 ACAAGCGGCCACAGTACTG 60.302 57.895 21.44 21.44 0.00 2.74
5752 5953 5.011125 AGGATTATGTACAGTGGGATTCTCG 59.989 44.000 0.33 0.00 0.00 4.04
5864 6068 0.242825 GGTTGGTTAGAAAAGCCGGC 59.757 55.000 21.89 21.89 31.91 6.13
6016 6220 1.891150 CCTTGAAGAACTGCAATGGCT 59.109 47.619 0.00 0.00 41.91 4.75
6059 6263 2.888212 ACTGAGGAGCTTTCTGAGAGT 58.112 47.619 10.44 0.00 0.00 3.24
6088 6292 2.815647 CTGCCTTCTTCCGACGCC 60.816 66.667 0.00 0.00 0.00 5.68
6089 6293 2.048127 ACTGCCTTCTTCCGACGC 60.048 61.111 0.00 0.00 0.00 5.19
6114 6318 6.255887 GTCGAGGGTATGTGAATTTCTTGTAG 59.744 42.308 0.00 0.00 0.00 2.74
6169 6373 1.212935 GGTGGTGTGGCAAGAGGATAT 59.787 52.381 0.00 0.00 0.00 1.63
6213 6426 9.701355 GAAACACAAATTTAACAAACAATGAGG 57.299 29.630 0.00 0.00 0.00 3.86
6339 6554 3.376935 CTTCCTCCCTGTCGCGCAT 62.377 63.158 8.75 0.00 0.00 4.73
6403 6618 5.605564 TGTCATGGATTTTGTAGTCGTTG 57.394 39.130 0.00 0.00 0.00 4.10
6410 6625 6.889177 TGCTCCTTAATGTCATGGATTTTGTA 59.111 34.615 0.00 0.00 0.00 2.41
6440 6655 3.006247 GGTCTCTTCTTCATGCACCTTC 58.994 50.000 0.00 0.00 0.00 3.46
6655 6872 1.779221 TGCCATTTGATCCCCATGTC 58.221 50.000 0.00 0.00 0.00 3.06
6685 6902 9.424319 CTAATCTTTGTAACTTCTCACAAGCTA 57.576 33.333 0.00 0.00 36.13 3.32
6855 7073 7.424803 CAAATCATCTGTTAAAGTGACAACCA 58.575 34.615 0.00 0.00 0.00 3.67
6856 7074 6.363357 GCAAATCATCTGTTAAAGTGACAACC 59.637 38.462 0.00 0.00 0.00 3.77
6903 7122 6.645827 CACATCATGCAATTGTGGAGTAAAAA 59.354 34.615 15.48 0.00 37.64 1.94
6947 7166 2.957312 GCTAACCTCCTCCTCCTCACAT 60.957 54.545 0.00 0.00 0.00 3.21
6984 7203 3.195825 CGAAAGGTGTCCTTCTGAGGTAT 59.804 47.826 1.36 0.00 43.92 2.73
7014 7233 1.203441 TCCTCCTGCAGCATTGACCT 61.203 55.000 8.66 0.00 0.00 3.85
7034 7253 3.141398 CACATCTTCATCAATACCCCCG 58.859 50.000 0.00 0.00 0.00 5.73
7081 7300 3.314388 GAAGCTTGGCGCCACTTCG 62.314 63.158 31.94 21.56 40.39 3.79
7105 7324 2.609244 GGCACTCTCTTGTCACAGAGAC 60.609 54.545 12.99 6.27 43.72 3.36
7128 7347 8.451748 CCTGTAGAACTTGCCTTTTAACTTATC 58.548 37.037 0.00 0.00 0.00 1.75
7130 7349 7.443272 GTCCTGTAGAACTTGCCTTTTAACTTA 59.557 37.037 0.00 0.00 0.00 2.24
7134 7353 4.753107 CGTCCTGTAGAACTTGCCTTTTAA 59.247 41.667 0.00 0.00 0.00 1.52
7183 7402 3.923864 TCGGCCAACACTCAGCGT 61.924 61.111 2.24 0.00 0.00 5.07
7208 7427 2.466846 CCTAACTGTTGAACGTGTCGT 58.533 47.619 2.69 0.00 43.97 4.34
7214 7433 1.191647 GTCACGCCTAACTGTTGAACG 59.808 52.381 2.69 6.36 0.00 3.95
7229 7448 0.248498 ACATACGCATCTCCGTCACG 60.248 55.000 0.00 0.00 42.20 4.35
7263 7482 0.824109 CTATCCTTCCTCGTGTGGCA 59.176 55.000 0.00 0.00 0.00 4.92
7306 7525 1.272807 TGGTGCTACCCCAACTCTAC 58.727 55.000 3.33 0.00 37.50 2.59
7413 7632 0.606944 ACATTCCCCGCACGCTTTAA 60.607 50.000 0.00 0.00 0.00 1.52
7426 7645 2.159170 CCTCGACCTCTCTTGACATTCC 60.159 54.545 0.00 0.00 0.00 3.01
7445 7664 5.491982 GTCCATGTCAAATTCAGTCTACCT 58.508 41.667 0.00 0.00 0.00 3.08
7467 7686 3.083293 GGTCTCTCTTAACAGACTCCGT 58.917 50.000 0.00 0.00 39.30 4.69
7468 7687 3.127895 CAGGTCTCTCTTAACAGACTCCG 59.872 52.174 0.00 0.00 39.30 4.63
7512 7731 2.846950 ACCCCTGTCCATAGCTAGTTT 58.153 47.619 0.00 0.00 0.00 2.66
7533 7752 5.371526 CACATGGATAGTAAGCTTCCACAT 58.628 41.667 0.00 0.00 42.09 3.21
7545 7764 0.471617 GGCTCTGGCACATGGATAGT 59.528 55.000 0.00 0.00 38.20 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.