Multiple sequence alignment - TraesCS4D01G031200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G031200 chr4D 100.000 4791 0 0 1 4791 14612385 14607595 0.000000e+00 8848.0
1 TraesCS4D01G031200 chr4D 90.867 1084 67 17 2902 3969 14664942 14666009 0.000000e+00 1424.0
2 TraesCS4D01G031200 chr4D 88.137 961 48 24 1730 2655 14663896 14664825 0.000000e+00 1083.0
3 TraesCS4D01G031200 chr4D 87.446 924 43 31 717 1603 14662846 14663733 0.000000e+00 996.0
4 TraesCS4D01G031200 chr4D 90.970 598 38 6 4200 4791 14666223 14666810 0.000000e+00 791.0
5 TraesCS4D01G031200 chr4D 94.714 454 24 0 3 456 456535648 456536101 0.000000e+00 706.0
6 TraesCS4D01G031200 chr4D 88.776 98 8 3 4025 4122 225215515 225215609 3.030000e-22 117.0
7 TraesCS4D01G031200 chr3B 87.967 2277 182 50 457 2689 452865703 452863475 0.000000e+00 2603.0
8 TraesCS4D01G031200 chr3B 88.263 1278 80 34 2786 4028 452863478 452862236 0.000000e+00 1465.0
9 TraesCS4D01G031200 chr3B 90.826 109 9 1 2679 2786 731134700 731134808 1.390000e-30 145.0
10 TraesCS4D01G031200 chr3B 94.805 77 4 0 4048 4124 752120264 752120188 2.340000e-23 121.0
11 TraesCS4D01G031200 chr3B 91.860 86 5 2 4038 4123 138269221 138269304 8.420000e-23 119.0
12 TraesCS4D01G031200 chr3B 86.441 59 6 1 2844 2902 795816177 795816233 4.000000e-06 63.9
13 TraesCS4D01G031200 chr4A 88.280 1988 110 45 746 2669 586738611 586736683 0.000000e+00 2266.0
14 TraesCS4D01G031200 chr4A 93.211 1149 52 8 2903 4033 586736569 586735429 0.000000e+00 1666.0
15 TraesCS4D01G031200 chr4A 89.173 1367 50 35 625 1940 456489389 456488070 0.000000e+00 1615.0
16 TraesCS4D01G031200 chr4A 92.435 1150 57 11 2903 4033 574196937 574195799 0.000000e+00 1615.0
17 TraesCS4D01G031200 chr4A 91.197 1136 64 18 2910 4028 456484873 456483757 0.000000e+00 1511.0
18 TraesCS4D01G031200 chr4A 88.457 823 48 15 1074 1861 574198877 574198067 0.000000e+00 950.0
19 TraesCS4D01G031200 chr4A 88.053 837 49 23 1871 2669 574197879 574197056 0.000000e+00 944.0
20 TraesCS4D01G031200 chr4A 89.760 625 38 6 4170 4791 586735327 586734726 0.000000e+00 776.0
21 TraesCS4D01G031200 chr4A 87.065 603 41 18 2097 2669 456485527 456484932 0.000000e+00 647.0
22 TraesCS4D01G031200 chr4A 95.726 351 12 1 4170 4520 574195699 574195352 3.240000e-156 562.0
23 TraesCS4D01G031200 chr4A 86.184 456 25 12 625 1071 574207185 574206759 4.370000e-125 459.0
24 TraesCS4D01G031200 chr4A 84.012 344 38 7 4288 4626 456483569 456483238 1.000000e-81 315.0
25 TraesCS4D01G031200 chr4A 92.353 170 12 1 4623 4791 456483178 456483009 1.720000e-59 241.0
26 TraesCS4D01G031200 chr4A 83.806 247 21 5 4548 4791 574195355 574195125 2.900000e-52 217.0
27 TraesCS4D01G031200 chr4A 88.750 160 18 0 457 616 456489585 456489426 3.780000e-46 196.0
28 TraesCS4D01G031200 chr4A 88.750 160 18 0 457 616 574207381 574207222 3.780000e-46 196.0
29 TraesCS4D01G031200 chr4A 91.045 134 3 3 1807 1940 456486094 456485970 6.370000e-39 172.0
30 TraesCS4D01G031200 chr4A 90.299 134 4 3 1807 1940 456486899 456486775 2.970000e-37 167.0
31 TraesCS4D01G031200 chr4A 89.524 105 9 1 2688 2792 564715269 564715167 1.080000e-26 132.0
32 TraesCS4D01G031200 chr4A 85.821 134 2 4 1807 1940 456487686 456487570 5.030000e-25 126.0
33 TraesCS4D01G031200 chr4B 89.628 1157 77 20 2901 4028 24565421 24566563 0.000000e+00 1432.0
34 TraesCS4D01G031200 chr4B 86.809 1175 115 16 457 1605 24562752 24563912 0.000000e+00 1275.0
35 TraesCS4D01G031200 chr4B 88.596 1061 67 18 1642 2669 24564000 24565039 0.000000e+00 1240.0
36 TraesCS4D01G031200 chr4B 89.462 446 38 4 4170 4607 24566697 24567141 5.420000e-154 555.0
37 TraesCS4D01G031200 chr4B 93.204 103 4 1 2687 2789 544445377 544445278 1.070000e-31 148.0
38 TraesCS4D01G031200 chr4B 91.011 89 6 2 4038 4126 172504437 172504523 8.420000e-23 119.0
39 TraesCS4D01G031200 chr4B 95.312 64 3 0 2844 2907 661199837 661199900 8.480000e-18 102.0
40 TraesCS4D01G031200 chr5D 94.934 454 22 1 3 456 106496100 106496552 0.000000e+00 710.0
41 TraesCS4D01G031200 chr5D 94.725 455 23 1 3 456 458492160 458491706 0.000000e+00 706.0
42 TraesCS4D01G031200 chr7D 94.130 460 23 4 3 461 313838104 313838560 0.000000e+00 697.0
43 TraesCS4D01G031200 chr7D 94.273 454 24 2 3 456 165777610 165777159 0.000000e+00 693.0
44 TraesCS4D01G031200 chr7D 90.179 112 5 1 2679 2784 46086862 46086973 1.800000e-29 141.0
45 TraesCS4D01G031200 chr7D 94.915 59 3 0 2844 2902 84253837 84253895 5.110000e-15 93.5
46 TraesCS4D01G031200 chr6D 94.273 454 26 0 3 456 80467896 80467443 0.000000e+00 695.0
47 TraesCS4D01G031200 chr6D 94.273 454 25 1 3 456 80462422 80461970 0.000000e+00 693.0
48 TraesCS4D01G031200 chr6D 94.737 76 4 0 4048 4123 65497160 65497085 8.420000e-23 119.0
49 TraesCS4D01G031200 chr6D 100.000 39 0 0 2844 2882 144591471 144591509 6.650000e-09 73.1
50 TraesCS4D01G031200 chr6D 100.000 39 0 0 2844 2882 327006764 327006726 6.650000e-09 73.1
51 TraesCS4D01G031200 chr6D 100.000 39 0 0 2844 2882 452122048 452122010 6.650000e-09 73.1
52 TraesCS4D01G031200 chr3D 94.273 454 25 1 3 456 126909564 126909112 0.000000e+00 693.0
53 TraesCS4D01G031200 chr3D 78.589 411 56 17 4385 4791 141491990 141491608 4.790000e-60 243.0
54 TraesCS4D01G031200 chr3D 78.345 411 57 17 4385 4791 351931681 351932063 2.230000e-58 237.0
55 TraesCS4D01G031200 chr3D 91.860 86 5 2 4038 4123 336539182 336539265 8.420000e-23 119.0
56 TraesCS4D01G031200 chr3D 91.860 86 5 2 4038 4123 583868991 583869074 8.420000e-23 119.0
57 TraesCS4D01G031200 chr3D 97.143 35 1 0 2868 2902 459467418 459467452 5.180000e-05 60.2
58 TraesCS4D01G031200 chr5B 93.873 457 26 2 3 457 626397608 626398064 0.000000e+00 688.0
59 TraesCS4D01G031200 chr5B 92.982 57 4 0 2844 2900 680311950 680312006 3.070000e-12 84.2
60 TraesCS4D01G031200 chr1A 78.345 411 57 17 4385 4791 223824288 223824670 2.230000e-58 237.0
61 TraesCS4D01G031200 chr1A 83.607 61 8 2 429 488 463735676 463735735 6.700000e-04 56.5
62 TraesCS4D01G031200 chr2D 78.102 411 54 19 4385 4791 431520007 431520385 1.340000e-55 228.0
63 TraesCS4D01G031200 chr2D 91.000 100 5 2 2687 2786 83966782 83966687 1.080000e-26 132.0
64 TraesCS4D01G031200 chr2D 93.333 60 4 0 2844 2903 564297048 564296989 6.600000e-14 89.8
65 TraesCS4D01G031200 chr3A 92.233 103 2 2 2687 2789 80090860 80090956 1.800000e-29 141.0
66 TraesCS4D01G031200 chr1D 90.476 105 9 1 2688 2792 465522982 465522879 2.330000e-28 137.0
67 TraesCS4D01G031200 chr7A 91.176 102 6 2 2688 2789 557893294 557893196 8.360000e-28 135.0
68 TraesCS4D01G031200 chr7A 88.542 96 7 4 4032 4127 631961172 631961081 3.920000e-21 113.0
69 TraesCS4D01G031200 chr2B 88.182 110 9 4 2688 2793 676589015 676589124 1.400000e-25 128.0
70 TraesCS4D01G031200 chr2B 100.000 28 0 0 2878 2905 12935465 12935492 9.000000e-03 52.8
71 TraesCS4D01G031200 chr2A 89.691 97 4 2 4027 4123 569281161 569281071 8.420000e-23 119.0
72 TraesCS4D01G031200 chr6B 87.640 89 5 5 2844 2929 151609052 151608967 1.100000e-16 99.0
73 TraesCS4D01G031200 chr6A 82.540 63 8 3 429 490 84316337 84316277 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G031200 chr4D 14607595 14612385 4790 True 8848.000000 8848 100.000000 1 4791 1 chr4D.!!$R1 4790
1 TraesCS4D01G031200 chr4D 14662846 14666810 3964 False 1073.500000 1424 89.355000 717 4791 4 chr4D.!!$F3 4074
2 TraesCS4D01G031200 chr3B 452862236 452865703 3467 True 2034.000000 2603 88.115000 457 4028 2 chr3B.!!$R2 3571
3 TraesCS4D01G031200 chr4A 586734726 586738611 3885 True 1569.333333 2266 90.417000 746 4791 3 chr4A.!!$R5 4045
4 TraesCS4D01G031200 chr4A 574195125 574198877 3752 True 857.600000 1615 89.695400 1074 4791 5 chr4A.!!$R3 3717
5 TraesCS4D01G031200 chr4A 456483009 456489585 6576 True 554.444444 1615 88.857222 457 4791 9 chr4A.!!$R2 4334
6 TraesCS4D01G031200 chr4A 574206759 574207381 622 True 327.500000 459 87.467000 457 1071 2 chr4A.!!$R4 614
7 TraesCS4D01G031200 chr4B 24562752 24567141 4389 False 1125.500000 1432 88.623750 457 4607 4 chr4B.!!$F3 4150

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
53 54 0.103208 ATTTCTCGCGGCTACAGAGG 59.897 55.0 6.13 0.00 33.16 3.69 F
1392 1495 0.032615 GAGAGGAGGAGGAGCAGGAA 60.033 60.0 0.00 0.00 0.00 3.36 F
1561 1664 1.885049 TGGCTCCTGATAGCTTCCTT 58.115 50.0 0.00 0.00 42.37 3.36 F
2618 5515 2.031333 GGAAGAGTTCTGCAAAGTGCTG 60.031 50.0 1.43 1.24 45.31 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1639 1798 2.706723 TGTTGGGGCTTCACAAGTAGTA 59.293 45.455 0.00 0.00 0.00 1.82 R
2359 5203 1.120530 ACCTGAAGTTGTCGACCACT 58.879 50.000 16.06 16.06 0.00 4.00 R
2885 6011 1.874129 ACATACTCCATCCGTCCCAA 58.126 50.000 0.00 0.00 0.00 4.12 R
4036 7218 0.689745 TTATGGGACTGGGACGGAGG 60.690 60.000 0.00 0.00 38.67 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 4.629442 CCGGAGAGGGCCTAGATT 57.371 61.111 5.73 0.00 35.97 2.40
33 34 2.053618 CCGGAGAGGGCCTAGATTG 58.946 63.158 5.73 0.00 35.97 2.67
34 35 0.470080 CCGGAGAGGGCCTAGATTGA 60.470 60.000 5.73 0.00 35.97 2.57
35 36 1.638529 CGGAGAGGGCCTAGATTGAT 58.361 55.000 5.73 0.00 0.00 2.57
36 37 1.974236 CGGAGAGGGCCTAGATTGATT 59.026 52.381 5.73 0.00 0.00 2.57
37 38 2.370189 CGGAGAGGGCCTAGATTGATTT 59.630 50.000 5.73 0.00 0.00 2.17
38 39 3.556004 CGGAGAGGGCCTAGATTGATTTC 60.556 52.174 5.73 0.00 0.00 2.17
39 40 3.650461 GGAGAGGGCCTAGATTGATTTCT 59.350 47.826 5.73 0.00 0.00 2.52
40 41 4.262851 GGAGAGGGCCTAGATTGATTTCTC 60.263 50.000 5.73 4.67 0.00 2.87
41 42 3.323403 AGAGGGCCTAGATTGATTTCTCG 59.677 47.826 5.73 0.00 0.00 4.04
42 43 2.147150 GGGCCTAGATTGATTTCTCGC 58.853 52.381 0.84 0.00 0.00 5.03
43 44 1.795286 GGCCTAGATTGATTTCTCGCG 59.205 52.381 0.00 0.00 0.00 5.87
44 45 1.795286 GCCTAGATTGATTTCTCGCGG 59.205 52.381 6.13 0.00 0.00 6.46
45 46 1.795286 CCTAGATTGATTTCTCGCGGC 59.205 52.381 6.13 0.00 0.00 6.53
46 47 2.546795 CCTAGATTGATTTCTCGCGGCT 60.547 50.000 6.13 0.00 0.00 5.52
47 48 2.890808 AGATTGATTTCTCGCGGCTA 57.109 45.000 6.13 0.00 0.00 3.93
48 49 2.474816 AGATTGATTTCTCGCGGCTAC 58.525 47.619 6.13 0.00 0.00 3.58
49 50 2.159099 AGATTGATTTCTCGCGGCTACA 60.159 45.455 6.13 0.00 0.00 2.74
50 51 1.640428 TTGATTTCTCGCGGCTACAG 58.360 50.000 6.13 0.00 0.00 2.74
51 52 0.815095 TGATTTCTCGCGGCTACAGA 59.185 50.000 6.13 0.00 0.00 3.41
52 53 1.202302 TGATTTCTCGCGGCTACAGAG 60.202 52.381 6.13 0.00 0.00 3.35
53 54 0.103208 ATTTCTCGCGGCTACAGAGG 59.897 55.000 6.13 0.00 33.16 3.69
54 55 2.558554 TTTCTCGCGGCTACAGAGGC 62.559 60.000 6.13 0.00 44.80 4.70
55 56 3.522731 CTCGCGGCTACAGAGGCT 61.523 66.667 6.13 0.00 46.06 4.58
56 57 3.068691 TCGCGGCTACAGAGGCTT 61.069 61.111 6.13 0.00 46.06 4.35
57 58 2.887568 CGCGGCTACAGAGGCTTG 60.888 66.667 0.00 0.00 46.06 4.01
58 59 3.198489 GCGGCTACAGAGGCTTGC 61.198 66.667 0.00 0.00 46.06 4.01
59 60 2.887568 CGGCTACAGAGGCTTGCG 60.888 66.667 0.00 0.00 46.06 4.85
60 61 2.512515 GGCTACAGAGGCTTGCGG 60.513 66.667 0.00 0.00 44.83 5.69
61 62 3.198489 GCTACAGAGGCTTGCGGC 61.198 66.667 0.00 0.00 40.90 6.53
62 63 2.887568 CTACAGAGGCTTGCGGCG 60.888 66.667 0.51 0.51 42.94 6.46
63 64 4.451150 TACAGAGGCTTGCGGCGG 62.451 66.667 9.78 0.00 42.94 6.13
89 90 5.990386 GGAACTTCCGATCTAGGTTAATTCC 59.010 44.000 0.00 0.00 0.00 3.01
90 91 5.548181 ACTTCCGATCTAGGTTAATTCCC 57.452 43.478 0.00 0.00 0.00 3.97
91 92 4.038883 ACTTCCGATCTAGGTTAATTCCCG 59.961 45.833 0.00 0.00 0.00 5.14
92 93 3.836146 TCCGATCTAGGTTAATTCCCGA 58.164 45.455 0.00 0.00 0.00 5.14
93 94 4.217510 TCCGATCTAGGTTAATTCCCGAA 58.782 43.478 0.00 0.00 0.00 4.30
94 95 4.280174 TCCGATCTAGGTTAATTCCCGAAG 59.720 45.833 0.00 0.00 0.00 3.79
115 116 8.804688 CGAAGGTTTCTGTATTTATAGGAGAG 57.195 38.462 0.00 0.00 0.00 3.20
116 117 7.868415 CGAAGGTTTCTGTATTTATAGGAGAGG 59.132 40.741 0.00 0.00 0.00 3.69
117 118 8.625467 AAGGTTTCTGTATTTATAGGAGAGGT 57.375 34.615 0.00 0.00 0.00 3.85
118 119 8.625467 AGGTTTCTGTATTTATAGGAGAGGTT 57.375 34.615 0.00 0.00 0.00 3.50
119 120 8.487028 AGGTTTCTGTATTTATAGGAGAGGTTG 58.513 37.037 0.00 0.00 0.00 3.77
120 121 7.715686 GGTTTCTGTATTTATAGGAGAGGTTGG 59.284 40.741 0.00 0.00 0.00 3.77
121 122 6.420913 TCTGTATTTATAGGAGAGGTTGGC 57.579 41.667 0.00 0.00 0.00 4.52
122 123 5.010719 TCTGTATTTATAGGAGAGGTTGGCG 59.989 44.000 0.00 0.00 0.00 5.69
123 124 4.652421 TGTATTTATAGGAGAGGTTGGCGT 59.348 41.667 0.00 0.00 0.00 5.68
124 125 4.772886 ATTTATAGGAGAGGTTGGCGTT 57.227 40.909 0.00 0.00 0.00 4.84
125 126 3.536956 TTATAGGAGAGGTTGGCGTTG 57.463 47.619 0.00 0.00 0.00 4.10
126 127 1.568504 ATAGGAGAGGTTGGCGTTGA 58.431 50.000 0.00 0.00 0.00 3.18
127 128 1.568504 TAGGAGAGGTTGGCGTTGAT 58.431 50.000 0.00 0.00 0.00 2.57
128 129 0.693049 AGGAGAGGTTGGCGTTGATT 59.307 50.000 0.00 0.00 0.00 2.57
129 130 1.073923 AGGAGAGGTTGGCGTTGATTT 59.926 47.619 0.00 0.00 0.00 2.17
130 131 1.468914 GGAGAGGTTGGCGTTGATTTC 59.531 52.381 0.00 0.00 0.00 2.17
131 132 2.151202 GAGAGGTTGGCGTTGATTTCA 58.849 47.619 0.00 0.00 0.00 2.69
132 133 1.880027 AGAGGTTGGCGTTGATTTCAC 59.120 47.619 0.00 0.00 0.00 3.18
133 134 0.591170 AGGTTGGCGTTGATTTCACG 59.409 50.000 0.00 0.00 0.00 4.35
134 135 0.309612 GGTTGGCGTTGATTTCACGT 59.690 50.000 0.00 0.00 0.00 4.49
135 136 1.662026 GGTTGGCGTTGATTTCACGTC 60.662 52.381 0.00 0.00 0.00 4.34
136 137 1.003331 GTTGGCGTTGATTTCACGTCA 60.003 47.619 0.00 0.00 39.79 4.35
137 138 0.865111 TGGCGTTGATTTCACGTCAG 59.135 50.000 0.00 0.00 36.54 3.51
138 139 0.165944 GGCGTTGATTTCACGTCAGG 59.834 55.000 0.00 0.00 0.00 3.86
139 140 0.165944 GCGTTGATTTCACGTCAGGG 59.834 55.000 0.00 0.00 0.00 4.45
140 141 0.796312 CGTTGATTTCACGTCAGGGG 59.204 55.000 0.00 0.00 0.00 4.79
141 142 1.165270 GTTGATTTCACGTCAGGGGG 58.835 55.000 0.00 0.00 0.00 5.40
142 143 1.060729 TTGATTTCACGTCAGGGGGA 58.939 50.000 0.00 0.00 0.00 4.81
143 144 0.323629 TGATTTCACGTCAGGGGGAC 59.676 55.000 0.00 0.00 43.36 4.46
156 157 2.442458 GGGACCCTCGAGGAGTCC 60.442 72.222 38.50 38.50 46.20 3.85
157 158 2.359404 GGACCCTCGAGGAGTCCA 59.641 66.667 39.68 2.15 46.20 4.02
158 159 2.053277 GGACCCTCGAGGAGTCCAC 61.053 68.421 39.68 26.28 46.20 4.02
159 160 2.361357 ACCCTCGAGGAGTCCACG 60.361 66.667 33.39 21.46 38.87 4.94
160 161 2.045242 CCCTCGAGGAGTCCACGA 60.045 66.667 33.39 26.80 43.54 4.35
163 164 2.750637 TCGAGGAGTCCACGAGGC 60.751 66.667 25.29 0.50 41.21 4.70
164 165 3.062466 CGAGGAGTCCACGAGGCA 61.062 66.667 22.80 0.00 39.84 4.75
165 166 2.574399 GAGGAGTCCACGAGGCAC 59.426 66.667 12.86 0.00 33.74 5.01
166 167 2.203640 AGGAGTCCACGAGGCACA 60.204 61.111 12.86 0.00 33.74 4.57
167 168 2.219325 GAGGAGTCCACGAGGCACAG 62.219 65.000 12.86 0.00 33.74 3.66
168 169 2.262915 GAGTCCACGAGGCACAGG 59.737 66.667 0.00 0.00 33.74 4.00
169 170 3.302347 GAGTCCACGAGGCACAGGG 62.302 68.421 0.00 0.00 33.74 4.45
170 171 4.394712 GTCCACGAGGCACAGGGG 62.395 72.222 0.00 0.00 33.74 4.79
234 235 3.013631 GGACTCCCCTCCGGTAGA 58.986 66.667 0.00 0.00 0.00 2.59
235 236 1.542679 GGACTCCCCTCCGGTAGAT 59.457 63.158 0.00 0.00 0.00 1.98
236 237 0.105607 GGACTCCCCTCCGGTAGATT 60.106 60.000 0.00 0.00 0.00 2.40
237 238 1.691801 GGACTCCCCTCCGGTAGATTT 60.692 57.143 0.00 0.00 0.00 2.17
238 239 2.117051 GACTCCCCTCCGGTAGATTTT 58.883 52.381 0.00 0.00 0.00 1.82
239 240 2.504585 GACTCCCCTCCGGTAGATTTTT 59.495 50.000 0.00 0.00 0.00 1.94
240 241 2.238898 ACTCCCCTCCGGTAGATTTTTG 59.761 50.000 0.00 0.00 0.00 2.44
241 242 2.238898 CTCCCCTCCGGTAGATTTTTGT 59.761 50.000 0.00 0.00 0.00 2.83
242 243 2.645797 TCCCCTCCGGTAGATTTTTGTT 59.354 45.455 0.00 0.00 0.00 2.83
243 244 3.074836 TCCCCTCCGGTAGATTTTTGTTT 59.925 43.478 0.00 0.00 0.00 2.83
244 245 3.442625 CCCCTCCGGTAGATTTTTGTTTC 59.557 47.826 0.00 0.00 0.00 2.78
245 246 4.076394 CCCTCCGGTAGATTTTTGTTTCA 58.924 43.478 0.00 0.00 0.00 2.69
246 247 4.156008 CCCTCCGGTAGATTTTTGTTTCAG 59.844 45.833 0.00 0.00 0.00 3.02
247 248 4.760204 CCTCCGGTAGATTTTTGTTTCAGT 59.240 41.667 0.00 0.00 0.00 3.41
248 249 5.935789 CCTCCGGTAGATTTTTGTTTCAGTA 59.064 40.000 0.00 0.00 0.00 2.74
249 250 6.598064 CCTCCGGTAGATTTTTGTTTCAGTAT 59.402 38.462 0.00 0.00 0.00 2.12
250 251 7.120726 CCTCCGGTAGATTTTTGTTTCAGTATT 59.879 37.037 0.00 0.00 0.00 1.89
251 252 8.398878 TCCGGTAGATTTTTGTTTCAGTATTT 57.601 30.769 0.00 0.00 0.00 1.40
252 253 8.852135 TCCGGTAGATTTTTGTTTCAGTATTTT 58.148 29.630 0.00 0.00 0.00 1.82
253 254 9.471084 CCGGTAGATTTTTGTTTCAGTATTTTT 57.529 29.630 0.00 0.00 0.00 1.94
290 291 7.566858 AAAAATTCTCCGTTGATTTTCATCG 57.433 32.000 1.92 1.92 38.79 3.84
291 292 3.740044 TTCTCCGTTGATTTTCATCGC 57.260 42.857 3.14 0.00 38.02 4.58
292 293 2.694213 TCTCCGTTGATTTTCATCGCA 58.306 42.857 3.14 0.00 38.02 5.10
293 294 3.270027 TCTCCGTTGATTTTCATCGCAT 58.730 40.909 3.14 0.00 38.02 4.73
294 295 3.689161 TCTCCGTTGATTTTCATCGCATT 59.311 39.130 3.14 0.00 38.02 3.56
295 296 4.014847 TCCGTTGATTTTCATCGCATTC 57.985 40.909 3.14 0.00 38.02 2.67
296 297 3.108144 CCGTTGATTTTCATCGCATTCC 58.892 45.455 3.14 0.00 38.02 3.01
297 298 2.777845 CGTTGATTTTCATCGCATTCCG 59.222 45.455 0.00 0.00 33.63 4.30
310 311 5.873179 TCGCATTCCGAGAACTTTTATTT 57.127 34.783 0.00 0.00 41.89 1.40
311 312 5.864986 TCGCATTCCGAGAACTTTTATTTC 58.135 37.500 0.00 0.00 41.89 2.17
312 313 5.642063 TCGCATTCCGAGAACTTTTATTTCT 59.358 36.000 0.00 0.00 41.89 2.52
313 314 5.734498 CGCATTCCGAGAACTTTTATTTCTG 59.266 40.000 0.00 0.00 40.02 3.02
314 315 5.513141 GCATTCCGAGAACTTTTATTTCTGC 59.487 40.000 0.00 0.00 33.30 4.26
315 316 6.611381 CATTCCGAGAACTTTTATTTCTGCA 58.389 36.000 0.00 0.00 33.30 4.41
316 317 5.607119 TCCGAGAACTTTTATTTCTGCAC 57.393 39.130 0.00 0.00 33.30 4.57
317 318 5.060506 TCCGAGAACTTTTATTTCTGCACA 58.939 37.500 0.00 0.00 33.30 4.57
318 319 5.529430 TCCGAGAACTTTTATTTCTGCACAA 59.471 36.000 0.00 0.00 33.30 3.33
319 320 6.038825 TCCGAGAACTTTTATTTCTGCACAAA 59.961 34.615 0.00 0.00 33.30 2.83
320 321 6.695278 CCGAGAACTTTTATTTCTGCACAAAA 59.305 34.615 0.00 0.00 33.30 2.44
321 322 7.221838 CCGAGAACTTTTATTTCTGCACAAAAA 59.778 33.333 0.00 0.00 33.30 1.94
322 323 8.050170 CGAGAACTTTTATTTCTGCACAAAAAC 58.950 33.333 0.00 0.00 33.30 2.43
323 324 8.770438 AGAACTTTTATTTCTGCACAAAAACA 57.230 26.923 0.00 0.00 31.88 2.83
324 325 9.213799 AGAACTTTTATTTCTGCACAAAAACAA 57.786 25.926 0.00 0.00 31.88 2.83
325 326 9.261318 GAACTTTTATTTCTGCACAAAAACAAC 57.739 29.630 0.00 0.00 0.00 3.32
326 327 8.316640 ACTTTTATTTCTGCACAAAAACAACA 57.683 26.923 0.00 0.00 0.00 3.33
327 328 8.227119 ACTTTTATTTCTGCACAAAAACAACAC 58.773 29.630 0.00 0.00 0.00 3.32
328 329 6.654793 TTATTTCTGCACAAAAACAACACC 57.345 33.333 0.00 0.00 0.00 4.16
329 330 3.667497 TTCTGCACAAAAACAACACCA 57.333 38.095 0.00 0.00 0.00 4.17
330 331 2.953020 TCTGCACAAAAACAACACCAC 58.047 42.857 0.00 0.00 0.00 4.16
331 332 1.653114 CTGCACAAAAACAACACCACG 59.347 47.619 0.00 0.00 0.00 4.94
332 333 0.995728 GCACAAAAACAACACCACGG 59.004 50.000 0.00 0.00 0.00 4.94
333 334 1.670380 GCACAAAAACAACACCACGGT 60.670 47.619 0.00 0.00 0.00 4.83
334 335 2.415625 GCACAAAAACAACACCACGGTA 60.416 45.455 0.00 0.00 0.00 4.02
335 336 3.430931 CACAAAAACAACACCACGGTAG 58.569 45.455 0.00 0.00 0.00 3.18
336 337 3.083293 ACAAAAACAACACCACGGTAGT 58.917 40.909 0.00 0.00 0.00 2.73
337 338 3.506844 ACAAAAACAACACCACGGTAGTT 59.493 39.130 0.00 0.00 0.00 2.24
338 339 4.022155 ACAAAAACAACACCACGGTAGTTT 60.022 37.500 7.43 7.43 32.34 2.66
339 340 4.787260 AAAACAACACCACGGTAGTTTT 57.213 36.364 15.15 15.15 34.78 2.43
340 341 3.768468 AACAACACCACGGTAGTTTTG 57.232 42.857 4.43 4.43 0.00 2.44
341 342 1.402613 ACAACACCACGGTAGTTTTGC 59.597 47.619 5.67 0.00 0.00 3.68
342 343 1.673920 CAACACCACGGTAGTTTTGCT 59.326 47.619 0.00 0.00 0.00 3.91
343 344 1.305201 ACACCACGGTAGTTTTGCTG 58.695 50.000 0.00 0.00 0.00 4.41
344 345 1.134340 ACACCACGGTAGTTTTGCTGA 60.134 47.619 0.00 0.00 0.00 4.26
345 346 1.944024 CACCACGGTAGTTTTGCTGAA 59.056 47.619 0.00 0.00 0.00 3.02
346 347 2.356382 CACCACGGTAGTTTTGCTGAAA 59.644 45.455 0.00 0.00 0.00 2.69
347 348 3.018149 ACCACGGTAGTTTTGCTGAAAA 58.982 40.909 0.00 0.00 0.00 2.29
358 359 3.736581 GCTGAAAACAGCGTCAGTC 57.263 52.632 6.46 0.00 42.72 3.51
359 360 0.235926 GCTGAAAACAGCGTCAGTCC 59.764 55.000 6.46 0.00 42.72 3.85
360 361 0.508641 CTGAAAACAGCGTCAGTCCG 59.491 55.000 0.00 0.00 37.16 4.79
361 362 0.878523 TGAAAACAGCGTCAGTCCGG 60.879 55.000 0.00 0.00 0.00 5.14
362 363 1.566018 GAAAACAGCGTCAGTCCGGG 61.566 60.000 0.00 0.00 0.00 5.73
363 364 2.319890 AAAACAGCGTCAGTCCGGGT 62.320 55.000 0.00 0.00 0.00 5.28
364 365 2.319890 AAACAGCGTCAGTCCGGGTT 62.320 55.000 0.00 0.00 0.00 4.11
365 366 1.466025 AACAGCGTCAGTCCGGGTTA 61.466 55.000 0.00 0.00 0.00 2.85
366 367 1.255667 ACAGCGTCAGTCCGGGTTAT 61.256 55.000 0.00 0.00 0.00 1.89
367 368 0.108329 CAGCGTCAGTCCGGGTTATT 60.108 55.000 0.00 0.00 0.00 1.40
368 369 0.611714 AGCGTCAGTCCGGGTTATTT 59.388 50.000 0.00 0.00 0.00 1.40
369 370 1.004595 GCGTCAGTCCGGGTTATTTC 58.995 55.000 0.00 0.00 0.00 2.17
370 371 1.405121 GCGTCAGTCCGGGTTATTTCT 60.405 52.381 0.00 0.00 0.00 2.52
371 372 2.159198 GCGTCAGTCCGGGTTATTTCTA 60.159 50.000 0.00 0.00 0.00 2.10
372 373 3.676873 GCGTCAGTCCGGGTTATTTCTAA 60.677 47.826 0.00 0.00 0.00 2.10
373 374 4.690122 CGTCAGTCCGGGTTATTTCTAAT 58.310 43.478 0.00 0.00 0.00 1.73
374 375 4.743644 CGTCAGTCCGGGTTATTTCTAATC 59.256 45.833 0.00 0.00 0.00 1.75
375 376 5.667466 GTCAGTCCGGGTTATTTCTAATCA 58.333 41.667 0.00 0.00 0.00 2.57
376 377 6.110707 GTCAGTCCGGGTTATTTCTAATCAA 58.889 40.000 0.00 0.00 0.00 2.57
377 378 6.596497 GTCAGTCCGGGTTATTTCTAATCAAA 59.404 38.462 0.00 0.00 0.00 2.69
378 379 7.282450 GTCAGTCCGGGTTATTTCTAATCAAAT 59.718 37.037 0.00 0.00 0.00 2.32
379 380 7.497909 TCAGTCCGGGTTATTTCTAATCAAATC 59.502 37.037 0.00 0.00 0.00 2.17
380 381 7.282224 CAGTCCGGGTTATTTCTAATCAAATCA 59.718 37.037 0.00 0.00 0.00 2.57
381 382 7.998964 AGTCCGGGTTATTTCTAATCAAATCAT 59.001 33.333 0.00 0.00 0.00 2.45
382 383 9.280174 GTCCGGGTTATTTCTAATCAAATCATA 57.720 33.333 0.00 0.00 0.00 2.15
383 384 9.280174 TCCGGGTTATTTCTAATCAAATCATAC 57.720 33.333 0.00 0.00 0.00 2.39
384 385 8.512138 CCGGGTTATTTCTAATCAAATCATACC 58.488 37.037 0.00 0.00 0.00 2.73
385 386 9.062524 CGGGTTATTTCTAATCAAATCATACCA 57.937 33.333 0.00 0.00 30.61 3.25
470 471 9.862371 GGAGACGTATCAAACATCATTATATCT 57.138 33.333 12.92 0.00 0.00 1.98
550 552 7.217200 GGTGCTATGGTCAGTGAGATTAAATA 58.783 38.462 0.00 0.00 0.00 1.40
559 561 9.331282 GGTCAGTGAGATTAAATATTTAGCAGT 57.669 33.333 7.91 6.15 0.00 4.40
673 704 3.118738 ACCTGAATTGTATCCCACTCGTC 60.119 47.826 0.00 0.00 0.00 4.20
686 717 1.531149 CACTCGTCGTGGCTTTTGATT 59.469 47.619 0.00 0.00 40.02 2.57
687 718 1.531149 ACTCGTCGTGGCTTTTGATTG 59.469 47.619 0.00 0.00 0.00 2.67
688 719 1.798223 CTCGTCGTGGCTTTTGATTGA 59.202 47.619 0.00 0.00 0.00 2.57
689 720 2.214347 TCGTCGTGGCTTTTGATTGAA 58.786 42.857 0.00 0.00 0.00 2.69
690 721 2.811431 TCGTCGTGGCTTTTGATTGAAT 59.189 40.909 0.00 0.00 0.00 2.57
839 888 1.672356 CCCGGAGTTTGGTCAGCAG 60.672 63.158 0.73 0.00 0.00 4.24
840 889 1.071471 CCGGAGTTTGGTCAGCAGT 59.929 57.895 0.00 0.00 0.00 4.40
841 890 0.951040 CCGGAGTTTGGTCAGCAGTC 60.951 60.000 0.00 0.00 0.00 3.51
842 891 0.249868 CGGAGTTTGGTCAGCAGTCA 60.250 55.000 0.00 0.00 0.00 3.41
843 892 1.517242 GGAGTTTGGTCAGCAGTCAG 58.483 55.000 0.00 0.00 0.00 3.51
844 893 0.871057 GAGTTTGGTCAGCAGTCAGC 59.129 55.000 0.00 0.00 46.19 4.26
1392 1495 0.032615 GAGAGGAGGAGGAGCAGGAA 60.033 60.000 0.00 0.00 0.00 3.36
1561 1664 1.885049 TGGCTCCTGATAGCTTCCTT 58.115 50.000 0.00 0.00 42.37 3.36
1616 1746 5.104109 TGCTAACAATGGCTTAGGGTTAGAT 60.104 40.000 12.53 0.00 42.01 1.98
1617 1747 5.828328 GCTAACAATGGCTTAGGGTTAGATT 59.172 40.000 12.53 0.00 42.01 2.40
1618 1748 6.996282 GCTAACAATGGCTTAGGGTTAGATTA 59.004 38.462 12.53 0.00 42.01 1.75
1619 1749 7.173390 GCTAACAATGGCTTAGGGTTAGATTAG 59.827 40.741 12.53 0.00 42.01 1.73
1620 1750 6.824958 ACAATGGCTTAGGGTTAGATTAGA 57.175 37.500 0.00 0.00 0.00 2.10
1639 1798 4.598036 AGATTCAGGTCATTGGTGGATT 57.402 40.909 0.00 0.00 0.00 3.01
1657 1816 3.054655 GGATTACTACTTGTGAAGCCCCA 60.055 47.826 0.00 0.00 0.00 4.96
1691 1851 2.499693 TGGAATTGCTACTCGTCATGGA 59.500 45.455 0.00 0.00 0.00 3.41
1692 1852 3.134623 TGGAATTGCTACTCGTCATGGAT 59.865 43.478 0.00 0.00 0.00 3.41
1693 1853 3.743396 GGAATTGCTACTCGTCATGGATC 59.257 47.826 0.00 0.00 0.00 3.36
1694 1854 4.371786 GAATTGCTACTCGTCATGGATCA 58.628 43.478 0.00 0.00 0.00 2.92
1695 1855 4.613925 ATTGCTACTCGTCATGGATCAT 57.386 40.909 0.00 0.00 0.00 2.45
1696 1856 3.375782 TGCTACTCGTCATGGATCATG 57.624 47.619 0.00 1.76 42.60 3.07
1697 1857 2.036346 TGCTACTCGTCATGGATCATGG 59.964 50.000 7.88 0.00 41.66 3.66
1826 2081 5.418840 CCAGTAAGTAATGATGCTTTTGGGT 59.581 40.000 0.00 0.00 34.30 4.51
1830 2085 9.084533 AGTAAGTAATGATGCTTTTGGGTTTTA 57.915 29.630 0.00 0.00 33.27 1.52
1831 2086 9.135843 GTAAGTAATGATGCTTTTGGGTTTTAC 57.864 33.333 0.00 0.00 33.27 2.01
1833 2088 7.602753 AGTAATGATGCTTTTGGGTTTTACTC 58.397 34.615 0.00 0.00 0.00 2.59
1836 2092 5.636123 TGATGCTTTTGGGTTTTACTCCTA 58.364 37.500 0.00 0.00 0.00 2.94
1900 4441 6.070309 AGTCAGCTCTTTCCTGAGAATACAAT 60.070 38.462 0.00 0.00 39.79 2.71
1901 4442 7.124901 AGTCAGCTCTTTCCTGAGAATACAATA 59.875 37.037 0.00 0.00 39.79 1.90
1902 4443 7.930865 GTCAGCTCTTTCCTGAGAATACAATAT 59.069 37.037 0.00 0.00 39.79 1.28
1903 4444 9.147732 TCAGCTCTTTCCTGAGAATACAATATA 57.852 33.333 0.00 0.00 34.59 0.86
1904 4445 9.941325 CAGCTCTTTCCTGAGAATACAATATAT 57.059 33.333 0.00 0.00 36.23 0.86
2043 4679 5.928153 CTTGTTTGCAAGCTAACTACCTAC 58.072 41.667 14.67 0.00 44.54 3.18
2044 4680 3.991773 TGTTTGCAAGCTAACTACCTACG 59.008 43.478 14.67 0.00 33.92 3.51
2045 4681 3.947910 TTGCAAGCTAACTACCTACGT 57.052 42.857 0.00 0.00 0.00 3.57
2046 4682 5.163513 GTTTGCAAGCTAACTACCTACGTA 58.836 41.667 5.98 0.00 0.00 3.57
2047 4683 4.627611 TGCAAGCTAACTACCTACGTAG 57.372 45.455 15.92 15.92 46.41 3.51
2136 4976 6.043854 ACCTCTGAGTCCTATTTCTGTTTC 57.956 41.667 3.66 0.00 0.00 2.78
2198 5039 3.580458 AGTTGACTGACAAGCTGGATACT 59.420 43.478 0.00 0.00 39.30 2.12
2216 5057 9.827411 CTGGATACTTTAAGTAAGAAAAAGCAC 57.173 33.333 8.99 0.00 33.89 4.40
2252 5096 4.008539 GCTGAAGCAGGTAATTTTCTCG 57.991 45.455 0.00 0.00 41.59 4.04
2285 5129 2.165437 GCCACTTGTGGTTCAGAACAAA 59.835 45.455 19.47 5.55 35.95 2.83
2311 5155 6.662755 TGCTATGTTCTTCATTCCCTGTTAT 58.337 36.000 0.00 0.00 37.91 1.89
2330 5174 5.700832 TGTTATGTTCCTGTCTGCTTAAGTG 59.299 40.000 4.02 0.00 0.00 3.16
2335 5179 2.300152 TCCTGTCTGCTTAAGTGACTGG 59.700 50.000 28.95 28.95 45.23 4.00
2359 5203 6.998074 GGACCTTGAATACCATGTGATATTCA 59.002 38.462 15.24 15.24 43.01 2.57
2399 5279 9.389755 TCAGGTGATAATTTTCATCGTTAATCA 57.610 29.630 1.79 0.00 31.79 2.57
2425 5305 4.215109 AGCCACTTGAAATACACTGGTTT 58.785 39.130 0.00 0.00 32.18 3.27
2491 5371 4.586421 TGTAGACTTGCTATCCCATCTGAG 59.414 45.833 0.00 0.00 0.00 3.35
2589 5473 6.424176 TTGAATTGTACAAAGTTCGTCACA 57.576 33.333 13.23 0.00 0.00 3.58
2618 5515 2.031333 GGAAGAGTTCTGCAAAGTGCTG 60.031 50.000 1.43 1.24 45.31 4.41
2662 5559 8.465273 AAGAAATGGGTGGAATTTATAGTAGC 57.535 34.615 0.00 0.00 0.00 3.58
2663 5560 7.816411 AGAAATGGGTGGAATTTATAGTAGCT 58.184 34.615 0.00 0.00 0.00 3.32
2667 5564 6.964464 TGGGTGGAATTTATAGTAGCTTTCA 58.036 36.000 0.00 0.00 0.00 2.69
2669 5566 7.556275 TGGGTGGAATTTATAGTAGCTTTCAAG 59.444 37.037 0.00 0.00 0.00 3.02
2730 5815 9.530633 AATATAAGAGCGTTTAGGTCACTAAAG 57.469 33.333 0.53 0.00 46.69 1.85
2731 5816 3.586892 AGAGCGTTTAGGTCACTAAAGC 58.413 45.455 0.53 6.80 46.69 3.51
2732 5817 2.334838 AGCGTTTAGGTCACTAAAGCG 58.665 47.619 0.53 8.32 46.69 4.68
2733 5818 2.064014 GCGTTTAGGTCACTAAAGCGT 58.936 47.619 15.95 0.00 46.69 5.07
2734 5819 2.477754 GCGTTTAGGTCACTAAAGCGTT 59.522 45.455 15.95 0.00 46.69 4.84
2735 5820 3.059393 GCGTTTAGGTCACTAAAGCGTTT 60.059 43.478 15.95 0.00 46.69 3.60
2736 5821 4.150451 GCGTTTAGGTCACTAAAGCGTTTA 59.850 41.667 15.95 0.00 46.69 2.01
2737 5822 5.667156 GCGTTTAGGTCACTAAAGCGTTTAG 60.667 44.000 12.83 12.83 46.69 1.85
2738 5823 5.630680 CGTTTAGGTCACTAAAGCGTTTAGA 59.369 40.000 18.27 1.30 46.69 2.10
2739 5824 6.309737 CGTTTAGGTCACTAAAGCGTTTAGAT 59.690 38.462 18.27 5.99 46.69 1.98
2740 5825 7.462462 CGTTTAGGTCACTAAAGCGTTTAGATC 60.462 40.741 18.27 4.00 46.69 2.75
2741 5826 5.401531 AGGTCACTAAAGCGTTTAGATCA 57.598 39.130 18.27 5.02 44.19 2.92
2742 5827 5.169295 AGGTCACTAAAGCGTTTAGATCAC 58.831 41.667 18.27 12.60 44.19 3.06
2743 5828 5.047235 AGGTCACTAAAGCGTTTAGATCACT 60.047 40.000 18.27 10.97 44.19 3.41
2782 5867 7.695869 AACGCTCTTATATTTCTTTACGGAG 57.304 36.000 0.00 0.00 0.00 4.63
2843 5969 7.894847 GCATTTGCAATGTAACCTTGTTATAC 58.105 34.615 0.00 0.00 41.59 1.47
2845 5971 9.289303 CATTTGCAATGTAACCTTGTTATACTC 57.711 33.333 0.00 0.00 0.00 2.59
2846 5972 6.995511 TGCAATGTAACCTTGTTATACTCC 57.004 37.500 0.00 0.00 0.00 3.85
2849 5975 6.238022 GCAATGTAACCTTGTTATACTCCGTC 60.238 42.308 0.00 0.00 0.00 4.79
2850 5976 5.329035 TGTAACCTTGTTATACTCCGTCC 57.671 43.478 0.00 0.00 0.00 4.79
2851 5977 3.900966 AACCTTGTTATACTCCGTCCC 57.099 47.619 0.00 0.00 0.00 4.46
2852 5978 2.823959 ACCTTGTTATACTCCGTCCCA 58.176 47.619 0.00 0.00 0.00 4.37
2854 5980 3.583966 ACCTTGTTATACTCCGTCCCAAA 59.416 43.478 0.00 0.00 0.00 3.28
2856 5982 5.190677 CCTTGTTATACTCCGTCCCAAAAT 58.809 41.667 0.00 0.00 0.00 1.82
2857 5983 6.070078 ACCTTGTTATACTCCGTCCCAAAATA 60.070 38.462 0.00 0.00 0.00 1.40
2858 5984 6.824704 CCTTGTTATACTCCGTCCCAAAATAA 59.175 38.462 0.00 0.00 0.00 1.40
2859 5985 7.012044 CCTTGTTATACTCCGTCCCAAAATAAG 59.988 40.741 0.00 0.00 0.00 1.73
2861 5987 6.819649 TGTTATACTCCGTCCCAAAATAAGTG 59.180 38.462 0.00 0.00 0.00 3.16
2862 5988 5.687166 ATACTCCGTCCCAAAATAAGTGA 57.313 39.130 0.00 0.00 0.00 3.41
2863 5989 3.671716 ACTCCGTCCCAAAATAAGTGAC 58.328 45.455 0.00 0.00 0.00 3.67
2865 5991 3.933332 CTCCGTCCCAAAATAAGTGACTC 59.067 47.826 0.00 0.00 0.00 3.36
2866 5992 2.671396 CCGTCCCAAAATAAGTGACTCG 59.329 50.000 0.00 0.00 0.00 4.18
2867 5993 3.581755 CGTCCCAAAATAAGTGACTCGA 58.418 45.455 0.00 0.00 0.00 4.04
2868 5994 3.367025 CGTCCCAAAATAAGTGACTCGAC 59.633 47.826 0.00 0.00 0.00 4.20
2872 5998 5.468746 TCCCAAAATAAGTGACTCGACTTTG 59.531 40.000 0.00 0.00 37.38 2.77
2873 5999 5.238650 CCCAAAATAAGTGACTCGACTTTGT 59.761 40.000 0.00 0.00 37.38 2.83
2874 6000 6.425721 CCCAAAATAAGTGACTCGACTTTGTA 59.574 38.462 0.00 0.00 37.38 2.41
2875 6001 7.288672 CCAAAATAAGTGACTCGACTTTGTAC 58.711 38.462 0.00 0.00 37.38 2.90
2876 6002 7.170998 CCAAAATAAGTGACTCGACTTTGTACT 59.829 37.037 0.00 0.00 37.38 2.73
2877 6003 9.188588 CAAAATAAGTGACTCGACTTTGTACTA 57.811 33.333 0.00 0.00 37.38 1.82
2878 6004 9.754382 AAAATAAGTGACTCGACTTTGTACTAA 57.246 29.630 0.00 0.00 37.38 2.24
2879 6005 8.739649 AATAAGTGACTCGACTTTGTACTAAC 57.260 34.615 0.00 0.00 37.38 2.34
2880 6006 6.388435 AAGTGACTCGACTTTGTACTAACT 57.612 37.500 0.00 0.00 31.92 2.24
2881 6007 6.388435 AGTGACTCGACTTTGTACTAACTT 57.612 37.500 0.00 0.00 0.00 2.66
2882 6008 7.502120 AGTGACTCGACTTTGTACTAACTTA 57.498 36.000 0.00 0.00 0.00 2.24
2883 6009 8.108551 AGTGACTCGACTTTGTACTAACTTAT 57.891 34.615 0.00 0.00 0.00 1.73
2884 6010 8.574737 AGTGACTCGACTTTGTACTAACTTATT 58.425 33.333 0.00 0.00 0.00 1.40
2885 6011 9.189723 GTGACTCGACTTTGTACTAACTTATTT 57.810 33.333 0.00 0.00 0.00 1.40
2886 6012 9.754382 TGACTCGACTTTGTACTAACTTATTTT 57.246 29.630 0.00 0.00 0.00 1.82
2888 6014 8.985805 ACTCGACTTTGTACTAACTTATTTTGG 58.014 33.333 0.00 0.00 0.00 3.28
2889 6015 8.314143 TCGACTTTGTACTAACTTATTTTGGG 57.686 34.615 0.00 0.00 0.00 4.12
2890 6016 8.149647 TCGACTTTGTACTAACTTATTTTGGGA 58.850 33.333 0.00 0.00 0.00 4.37
2891 6017 8.225777 CGACTTTGTACTAACTTATTTTGGGAC 58.774 37.037 0.00 0.00 0.00 4.46
2892 6018 8.091385 ACTTTGTACTAACTTATTTTGGGACG 57.909 34.615 0.00 0.00 0.00 4.79
2893 6019 7.173735 ACTTTGTACTAACTTATTTTGGGACGG 59.826 37.037 0.00 0.00 0.00 4.79
2894 6020 6.357579 TGTACTAACTTATTTTGGGACGGA 57.642 37.500 0.00 0.00 0.00 4.69
2895 6021 6.949715 TGTACTAACTTATTTTGGGACGGAT 58.050 36.000 0.00 0.00 0.00 4.18
2908 6034 4.743124 TGGGACGGATGGAGTATGTATAA 58.257 43.478 0.00 0.00 0.00 0.98
2957 6083 2.754552 TGGTGGTTGCATGCTCTATTTC 59.245 45.455 20.33 4.04 0.00 2.17
3557 6723 3.511699 TGTGATCGAACTGTGTGCTATC 58.488 45.455 0.00 0.00 0.00 2.08
3583 6751 5.920840 GTCCATTTTGAGCTAAAACCACTTC 59.079 40.000 0.00 0.00 40.80 3.01
3634 6805 1.354040 CAGCAGCACCTTTCTCTACG 58.646 55.000 0.00 0.00 0.00 3.51
3739 6911 3.004951 CCTTCCCCTGCTGCATCT 58.995 61.111 1.31 0.00 0.00 2.90
3748 6920 2.827642 GCTGCATCTGGTGGCTCC 60.828 66.667 0.00 0.00 0.00 4.70
3757 6929 1.897225 CTGGTGGCTCCTCCTCTGTG 61.897 65.000 7.19 0.00 37.07 3.66
3820 6992 1.301087 CCGAACGTAGGCCACAACA 60.301 57.895 5.01 0.00 0.00 3.33
3995 7177 2.027625 GCCGTGTTCTTCTCCGTGG 61.028 63.158 0.00 0.00 0.00 4.94
4010 7192 0.174845 CGTGGGCTGAGGTCGAAATA 59.825 55.000 0.00 0.00 0.00 1.40
4041 7223 7.325694 TCACTTTAATTAAACTACTCCCTCCG 58.674 38.462 6.54 0.00 0.00 4.63
4042 7224 7.038799 TCACTTTAATTAAACTACTCCCTCCGT 60.039 37.037 6.54 0.00 0.00 4.69
4043 7225 7.277319 CACTTTAATTAAACTACTCCCTCCGTC 59.723 40.741 6.54 0.00 0.00 4.79
4044 7226 4.750021 AATTAAACTACTCCCTCCGTCC 57.250 45.455 0.00 0.00 0.00 4.79
4045 7227 2.149973 TAAACTACTCCCTCCGTCCC 57.850 55.000 0.00 0.00 0.00 4.46
4046 7228 0.115745 AAACTACTCCCTCCGTCCCA 59.884 55.000 0.00 0.00 0.00 4.37
4047 7229 0.324460 AACTACTCCCTCCGTCCCAG 60.324 60.000 0.00 0.00 0.00 4.45
4048 7230 1.306970 CTACTCCCTCCGTCCCAGT 59.693 63.158 0.00 0.00 0.00 4.00
4049 7231 0.752376 CTACTCCCTCCGTCCCAGTC 60.752 65.000 0.00 0.00 0.00 3.51
4050 7232 2.220786 TACTCCCTCCGTCCCAGTCC 62.221 65.000 0.00 0.00 0.00 3.85
4051 7233 4.393778 TCCCTCCGTCCCAGTCCC 62.394 72.222 0.00 0.00 0.00 4.46
4052 7234 4.715130 CCCTCCGTCCCAGTCCCA 62.715 72.222 0.00 0.00 0.00 4.37
4053 7235 2.365635 CCTCCGTCCCAGTCCCAT 60.366 66.667 0.00 0.00 0.00 4.00
4054 7236 1.075525 CCTCCGTCCCAGTCCCATA 60.076 63.158 0.00 0.00 0.00 2.74
4055 7237 0.689745 CCTCCGTCCCAGTCCCATAA 60.690 60.000 0.00 0.00 0.00 1.90
4056 7238 1.424638 CTCCGTCCCAGTCCCATAAT 58.575 55.000 0.00 0.00 0.00 1.28
4057 7239 2.605257 CTCCGTCCCAGTCCCATAATA 58.395 52.381 0.00 0.00 0.00 0.98
4058 7240 3.173965 CTCCGTCCCAGTCCCATAATAT 58.826 50.000 0.00 0.00 0.00 1.28
4059 7241 4.350245 CTCCGTCCCAGTCCCATAATATA 58.650 47.826 0.00 0.00 0.00 0.86
4060 7242 4.754311 TCCGTCCCAGTCCCATAATATAA 58.246 43.478 0.00 0.00 0.00 0.98
4061 7243 4.775780 TCCGTCCCAGTCCCATAATATAAG 59.224 45.833 0.00 0.00 0.00 1.73
4062 7244 4.775780 CCGTCCCAGTCCCATAATATAAGA 59.224 45.833 0.00 0.00 0.00 2.10
4063 7245 5.247564 CCGTCCCAGTCCCATAATATAAGAA 59.752 44.000 0.00 0.00 0.00 2.52
4064 7246 6.164176 CGTCCCAGTCCCATAATATAAGAAC 58.836 44.000 0.00 0.00 0.00 3.01
4065 7247 6.014499 CGTCCCAGTCCCATAATATAAGAACT 60.014 42.308 0.00 0.00 0.00 3.01
4066 7248 7.472945 CGTCCCAGTCCCATAATATAAGAACTT 60.473 40.741 0.00 0.00 0.00 2.66
4067 7249 8.218488 GTCCCAGTCCCATAATATAAGAACTTT 58.782 37.037 0.00 0.00 0.00 2.66
4068 7250 8.787818 TCCCAGTCCCATAATATAAGAACTTTT 58.212 33.333 0.00 0.00 0.00 2.27
4069 7251 9.421399 CCCAGTCCCATAATATAAGAACTTTTT 57.579 33.333 0.00 0.00 0.00 1.94
4088 7270 3.994204 TTTGACACTACGCTACTGTCA 57.006 42.857 0.00 0.00 41.97 3.58
4090 7272 3.994204 TGACACTACGCTACTGTCAAA 57.006 42.857 3.96 0.00 41.00 2.69
4091 7273 4.310357 TGACACTACGCTACTGTCAAAA 57.690 40.909 3.96 0.00 41.00 2.44
4092 7274 4.684877 TGACACTACGCTACTGTCAAAAA 58.315 39.130 3.96 0.00 41.00 1.94
4093 7275 4.505191 TGACACTACGCTACTGTCAAAAAC 59.495 41.667 3.96 0.00 41.00 2.43
4094 7276 4.435425 ACACTACGCTACTGTCAAAAACA 58.565 39.130 0.00 0.00 36.18 2.83
4095 7277 5.054477 ACACTACGCTACTGTCAAAAACAT 58.946 37.500 0.00 0.00 37.23 2.71
4096 7278 5.526111 ACACTACGCTACTGTCAAAAACATT 59.474 36.000 0.00 0.00 37.23 2.71
4097 7279 6.071463 CACTACGCTACTGTCAAAAACATTC 58.929 40.000 0.00 0.00 37.23 2.67
4098 7280 5.989777 ACTACGCTACTGTCAAAAACATTCT 59.010 36.000 0.00 0.00 37.23 2.40
4099 7281 5.751243 ACGCTACTGTCAAAAACATTCTT 57.249 34.783 0.00 0.00 37.23 2.52
4100 7282 6.854496 ACGCTACTGTCAAAAACATTCTTA 57.146 33.333 0.00 0.00 37.23 2.10
4101 7283 7.435068 ACGCTACTGTCAAAAACATTCTTAT 57.565 32.000 0.00 0.00 37.23 1.73
4102 7284 8.542497 ACGCTACTGTCAAAAACATTCTTATA 57.458 30.769 0.00 0.00 37.23 0.98
4103 7285 9.162764 ACGCTACTGTCAAAAACATTCTTATAT 57.837 29.630 0.00 0.00 37.23 0.86
4104 7286 9.988350 CGCTACTGTCAAAAACATTCTTATATT 57.012 29.630 0.00 0.00 37.23 1.28
4307 7570 3.809905 ACACACAAGGAGGAAACTTCTC 58.190 45.455 0.00 0.00 46.13 2.87
4348 7611 5.539979 TGCAACAAAATGATGTTACATGCT 58.460 33.333 1.24 0.00 41.44 3.79
4377 7640 5.291858 CAGAAGTGCTATTGTATTGAAGCGA 59.708 40.000 0.00 0.00 37.80 4.93
4411 7679 8.106247 TCATCAGTTTGGACTAAAATAACCAC 57.894 34.615 0.00 0.00 33.90 4.16
4495 7765 3.282021 GAGTACCCGTAGACATACACCA 58.718 50.000 0.00 0.00 31.76 4.17
4550 7820 1.933853 CAATTCCTTTAGGACGCGGAG 59.066 52.381 12.47 0.00 45.39 4.63
4619 7889 8.469200 TGGCCAGAAATTAACTGAATCATTAAG 58.531 33.333 0.00 0.00 37.54 1.85
4641 7977 9.616156 TTAAGAGGTACACATAACAAGAACAAA 57.384 29.630 0.00 0.00 0.00 2.83
4700 8037 9.523168 AAAGTGTAAAGCATTAACATAAGGGTA 57.477 29.630 0.00 0.00 0.00 3.69
4722 8059 6.759356 GGTATAAAAAGCCAACAACAAACAGT 59.241 34.615 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 0.470080 TCAATCTAGGCCCTCTCCGG 60.470 60.000 0.00 0.00 0.00 5.14
16 17 1.638529 ATCAATCTAGGCCCTCTCCG 58.361 55.000 0.00 0.00 0.00 4.63
17 18 3.650461 AGAAATCAATCTAGGCCCTCTCC 59.350 47.826 0.00 0.00 0.00 3.71
18 19 4.560513 CGAGAAATCAATCTAGGCCCTCTC 60.561 50.000 0.00 0.00 0.00 3.20
19 20 3.323403 CGAGAAATCAATCTAGGCCCTCT 59.677 47.826 0.00 0.00 0.00 3.69
20 21 3.658709 CGAGAAATCAATCTAGGCCCTC 58.341 50.000 0.00 0.00 0.00 4.30
21 22 2.224402 GCGAGAAATCAATCTAGGCCCT 60.224 50.000 0.00 0.00 0.00 5.19
22 23 2.147150 GCGAGAAATCAATCTAGGCCC 58.853 52.381 0.00 0.00 0.00 5.80
23 24 1.795286 CGCGAGAAATCAATCTAGGCC 59.205 52.381 0.00 0.00 0.00 5.19
24 25 1.795286 CCGCGAGAAATCAATCTAGGC 59.205 52.381 8.23 0.00 0.00 3.93
25 26 1.795286 GCCGCGAGAAATCAATCTAGG 59.205 52.381 8.23 0.00 0.00 3.02
26 27 2.748605 AGCCGCGAGAAATCAATCTAG 58.251 47.619 8.23 0.00 0.00 2.43
27 28 2.890808 AGCCGCGAGAAATCAATCTA 57.109 45.000 8.23 0.00 0.00 1.98
28 29 2.159099 TGTAGCCGCGAGAAATCAATCT 60.159 45.455 8.23 0.00 0.00 2.40
29 30 2.201732 TGTAGCCGCGAGAAATCAATC 58.798 47.619 8.23 0.00 0.00 2.67
30 31 2.159099 TCTGTAGCCGCGAGAAATCAAT 60.159 45.455 8.23 0.00 0.00 2.57
31 32 1.203758 TCTGTAGCCGCGAGAAATCAA 59.796 47.619 8.23 0.00 0.00 2.57
32 33 0.815095 TCTGTAGCCGCGAGAAATCA 59.185 50.000 8.23 0.00 0.00 2.57
33 34 1.482278 CTCTGTAGCCGCGAGAAATC 58.518 55.000 8.23 0.00 0.00 2.17
34 35 0.103208 CCTCTGTAGCCGCGAGAAAT 59.897 55.000 8.23 0.00 0.00 2.17
35 36 1.511305 CCTCTGTAGCCGCGAGAAA 59.489 57.895 8.23 0.00 0.00 2.52
36 37 3.064987 GCCTCTGTAGCCGCGAGAA 62.065 63.158 8.23 0.00 0.00 2.87
37 38 3.518998 GCCTCTGTAGCCGCGAGA 61.519 66.667 8.23 0.00 0.00 4.04
38 39 3.069980 AAGCCTCTGTAGCCGCGAG 62.070 63.158 8.23 0.00 0.00 5.03
39 40 3.068691 AAGCCTCTGTAGCCGCGA 61.069 61.111 8.23 0.00 0.00 5.87
40 41 2.887568 CAAGCCTCTGTAGCCGCG 60.888 66.667 0.00 0.00 0.00 6.46
41 42 3.198489 GCAAGCCTCTGTAGCCGC 61.198 66.667 0.00 0.00 0.00 6.53
42 43 2.887568 CGCAAGCCTCTGTAGCCG 60.888 66.667 0.00 0.00 0.00 5.52
43 44 2.512515 CCGCAAGCCTCTGTAGCC 60.513 66.667 0.00 0.00 0.00 3.93
44 45 3.198489 GCCGCAAGCCTCTGTAGC 61.198 66.667 0.00 0.00 34.35 3.58
45 46 2.887568 CGCCGCAAGCCTCTGTAG 60.888 66.667 0.00 0.00 38.78 2.74
46 47 4.451150 CCGCCGCAAGCCTCTGTA 62.451 66.667 0.00 0.00 38.78 2.74
65 66 5.990386 GGAATTAACCTAGATCGGAAGTTCC 59.010 44.000 12.27 12.27 0.00 3.62
66 67 5.990386 GGGAATTAACCTAGATCGGAAGTTC 59.010 44.000 0.00 0.00 0.00 3.01
67 68 5.452917 CGGGAATTAACCTAGATCGGAAGTT 60.453 44.000 0.00 0.00 0.00 2.66
68 69 4.038883 CGGGAATTAACCTAGATCGGAAGT 59.961 45.833 0.00 0.00 0.00 3.01
69 70 4.280174 TCGGGAATTAACCTAGATCGGAAG 59.720 45.833 0.00 0.00 0.00 3.46
70 71 4.217510 TCGGGAATTAACCTAGATCGGAA 58.782 43.478 0.00 0.00 0.00 4.30
71 72 3.836146 TCGGGAATTAACCTAGATCGGA 58.164 45.455 0.00 0.00 0.00 4.55
72 73 4.557205 CTTCGGGAATTAACCTAGATCGG 58.443 47.826 0.00 0.00 0.00 4.18
73 74 4.038883 ACCTTCGGGAATTAACCTAGATCG 59.961 45.833 0.00 0.00 38.77 3.69
74 75 5.548181 ACCTTCGGGAATTAACCTAGATC 57.452 43.478 0.00 0.00 38.77 2.75
75 76 5.970501 AACCTTCGGGAATTAACCTAGAT 57.029 39.130 0.00 0.00 38.77 1.98
76 77 5.486419 AGAAACCTTCGGGAATTAACCTAGA 59.514 40.000 0.00 0.00 38.77 2.43
77 78 5.585047 CAGAAACCTTCGGGAATTAACCTAG 59.415 44.000 0.00 0.00 38.77 3.02
78 79 5.013391 ACAGAAACCTTCGGGAATTAACCTA 59.987 40.000 0.00 0.00 38.77 3.08
79 80 4.202535 ACAGAAACCTTCGGGAATTAACCT 60.203 41.667 0.00 0.00 38.77 3.50
80 81 4.077108 ACAGAAACCTTCGGGAATTAACC 58.923 43.478 0.00 0.00 38.77 2.85
81 82 6.997239 ATACAGAAACCTTCGGGAATTAAC 57.003 37.500 0.00 0.00 38.77 2.01
82 83 9.689501 ATAAATACAGAAACCTTCGGGAATTAA 57.310 29.630 0.00 0.00 38.77 1.40
84 85 9.338622 CTATAAATACAGAAACCTTCGGGAATT 57.661 33.333 0.00 0.00 38.77 2.17
85 86 7.937394 CCTATAAATACAGAAACCTTCGGGAAT 59.063 37.037 0.00 0.00 38.77 3.01
86 87 7.126115 TCCTATAAATACAGAAACCTTCGGGAA 59.874 37.037 0.00 0.00 38.77 3.97
87 88 6.612456 TCCTATAAATACAGAAACCTTCGGGA 59.388 38.462 0.00 0.00 38.77 5.14
88 89 6.823497 TCCTATAAATACAGAAACCTTCGGG 58.177 40.000 0.00 0.00 41.87 5.14
89 90 7.723324 TCTCCTATAAATACAGAAACCTTCGG 58.277 38.462 0.00 0.00 34.02 4.30
90 91 7.868415 CCTCTCCTATAAATACAGAAACCTTCG 59.132 40.741 0.00 0.00 34.02 3.79
91 92 8.706521 ACCTCTCCTATAAATACAGAAACCTTC 58.293 37.037 0.00 0.00 0.00 3.46
92 93 8.625467 ACCTCTCCTATAAATACAGAAACCTT 57.375 34.615 0.00 0.00 0.00 3.50
93 94 8.487028 CAACCTCTCCTATAAATACAGAAACCT 58.513 37.037 0.00 0.00 0.00 3.50
94 95 7.715686 CCAACCTCTCCTATAAATACAGAAACC 59.284 40.741 0.00 0.00 0.00 3.27
95 96 7.226918 GCCAACCTCTCCTATAAATACAGAAAC 59.773 40.741 0.00 0.00 0.00 2.78
96 97 7.280356 GCCAACCTCTCCTATAAATACAGAAA 58.720 38.462 0.00 0.00 0.00 2.52
97 98 6.462487 CGCCAACCTCTCCTATAAATACAGAA 60.462 42.308 0.00 0.00 0.00 3.02
98 99 5.010719 CGCCAACCTCTCCTATAAATACAGA 59.989 44.000 0.00 0.00 0.00 3.41
99 100 5.221461 ACGCCAACCTCTCCTATAAATACAG 60.221 44.000 0.00 0.00 0.00 2.74
100 101 4.652421 ACGCCAACCTCTCCTATAAATACA 59.348 41.667 0.00 0.00 0.00 2.29
101 102 5.211174 ACGCCAACCTCTCCTATAAATAC 57.789 43.478 0.00 0.00 0.00 1.89
102 103 5.364446 TCAACGCCAACCTCTCCTATAAATA 59.636 40.000 0.00 0.00 0.00 1.40
103 104 4.163458 TCAACGCCAACCTCTCCTATAAAT 59.837 41.667 0.00 0.00 0.00 1.40
104 105 3.516300 TCAACGCCAACCTCTCCTATAAA 59.484 43.478 0.00 0.00 0.00 1.40
105 106 3.101437 TCAACGCCAACCTCTCCTATAA 58.899 45.455 0.00 0.00 0.00 0.98
106 107 2.742348 TCAACGCCAACCTCTCCTATA 58.258 47.619 0.00 0.00 0.00 1.31
107 108 1.568504 TCAACGCCAACCTCTCCTAT 58.431 50.000 0.00 0.00 0.00 2.57
108 109 1.568504 ATCAACGCCAACCTCTCCTA 58.431 50.000 0.00 0.00 0.00 2.94
109 110 0.693049 AATCAACGCCAACCTCTCCT 59.307 50.000 0.00 0.00 0.00 3.69
110 111 1.468914 GAAATCAACGCCAACCTCTCC 59.531 52.381 0.00 0.00 0.00 3.71
111 112 2.095718 GTGAAATCAACGCCAACCTCTC 60.096 50.000 0.00 0.00 0.00 3.20
112 113 1.880027 GTGAAATCAACGCCAACCTCT 59.120 47.619 0.00 0.00 0.00 3.69
113 114 1.399727 CGTGAAATCAACGCCAACCTC 60.400 52.381 0.00 0.00 0.00 3.85
114 115 0.591170 CGTGAAATCAACGCCAACCT 59.409 50.000 0.00 0.00 0.00 3.50
115 116 0.309612 ACGTGAAATCAACGCCAACC 59.690 50.000 0.00 0.00 0.00 3.77
116 117 1.003331 TGACGTGAAATCAACGCCAAC 60.003 47.619 0.00 0.00 0.00 3.77
117 118 1.262950 CTGACGTGAAATCAACGCCAA 59.737 47.619 0.00 0.00 0.00 4.52
118 119 0.865111 CTGACGTGAAATCAACGCCA 59.135 50.000 0.00 0.00 0.00 5.69
119 120 0.165944 CCTGACGTGAAATCAACGCC 59.834 55.000 0.00 0.00 0.00 5.68
120 121 0.165944 CCCTGACGTGAAATCAACGC 59.834 55.000 0.00 0.00 0.00 4.84
121 122 0.796312 CCCCTGACGTGAAATCAACG 59.204 55.000 0.00 0.00 0.00 4.10
122 123 1.165270 CCCCCTGACGTGAAATCAAC 58.835 55.000 0.00 0.00 0.00 3.18
123 124 1.060729 TCCCCCTGACGTGAAATCAA 58.939 50.000 0.00 0.00 0.00 2.57
124 125 0.323629 GTCCCCCTGACGTGAAATCA 59.676 55.000 0.00 0.00 33.49 2.57
125 126 0.392595 GGTCCCCCTGACGTGAAATC 60.393 60.000 0.00 0.00 45.46 2.17
126 127 1.683441 GGTCCCCCTGACGTGAAAT 59.317 57.895 0.00 0.00 45.46 2.17
127 128 2.522367 GGGTCCCCCTGACGTGAAA 61.522 63.158 0.00 0.00 45.46 2.69
128 129 2.926242 GGGTCCCCCTGACGTGAA 60.926 66.667 0.00 0.00 45.46 3.18
137 138 4.077180 ACTCCTCGAGGGTCCCCC 62.077 72.222 30.80 0.00 45.90 5.40
138 139 2.442458 GACTCCTCGAGGGTCCCC 60.442 72.222 30.80 12.01 33.35 4.81
139 140 2.442458 GGACTCCTCGAGGGTCCC 60.442 72.222 37.49 28.42 43.66 4.46
140 141 2.053277 GTGGACTCCTCGAGGGTCC 61.053 68.421 38.95 38.95 46.66 4.46
141 142 2.408241 CGTGGACTCCTCGAGGGTC 61.408 68.421 30.14 30.14 42.19 4.46
142 143 2.361357 CGTGGACTCCTCGAGGGT 60.361 66.667 30.80 25.49 42.19 4.34
143 144 2.045242 TCGTGGACTCCTCGAGGG 60.045 66.667 30.80 22.55 43.13 4.30
146 147 2.750637 GCCTCGTGGACTCCTCGA 60.751 66.667 18.71 18.71 45.24 4.04
147 148 3.062466 TGCCTCGTGGACTCCTCG 61.062 66.667 12.47 12.47 41.16 4.63
148 149 2.219325 CTGTGCCTCGTGGACTCCTC 62.219 65.000 7.92 0.00 34.57 3.71
149 150 2.203640 TGTGCCTCGTGGACTCCT 60.204 61.111 7.92 0.00 34.57 3.69
150 151 2.262915 CTGTGCCTCGTGGACTCC 59.737 66.667 7.92 0.00 34.57 3.85
151 152 2.262915 CCTGTGCCTCGTGGACTC 59.737 66.667 7.92 0.85 34.57 3.36
152 153 3.314331 CCCTGTGCCTCGTGGACT 61.314 66.667 7.92 0.00 34.57 3.85
153 154 4.394712 CCCCTGTGCCTCGTGGAC 62.395 72.222 7.92 3.62 34.57 4.02
225 226 5.941948 ACTGAAACAAAAATCTACCGGAG 57.058 39.130 9.46 0.60 0.00 4.63
226 227 7.989416 AATACTGAAACAAAAATCTACCGGA 57.011 32.000 9.46 0.00 0.00 5.14
227 228 9.471084 AAAAATACTGAAACAAAAATCTACCGG 57.529 29.630 0.00 0.00 0.00 5.28
266 267 6.089417 GCGATGAAAATCAACGGAGAATTTTT 59.911 34.615 11.14 0.00 41.93 1.94
267 268 5.572896 GCGATGAAAATCAACGGAGAATTTT 59.427 36.000 11.14 0.00 41.93 1.82
268 269 5.095490 GCGATGAAAATCAACGGAGAATTT 58.905 37.500 11.14 0.00 41.93 1.82
269 270 4.155826 TGCGATGAAAATCAACGGAGAATT 59.844 37.500 11.14 0.00 41.93 2.17
270 271 3.689161 TGCGATGAAAATCAACGGAGAAT 59.311 39.130 11.14 0.00 41.93 2.40
271 272 3.070748 TGCGATGAAAATCAACGGAGAA 58.929 40.909 11.14 0.00 41.93 2.87
272 273 2.694213 TGCGATGAAAATCAACGGAGA 58.306 42.857 11.14 0.00 41.93 3.71
273 274 3.680642 ATGCGATGAAAATCAACGGAG 57.319 42.857 11.14 0.00 44.68 4.63
274 275 3.181501 GGAATGCGATGAAAATCAACGGA 60.182 43.478 11.14 9.00 45.40 4.69
275 276 3.108144 GGAATGCGATGAAAATCAACGG 58.892 45.455 11.14 0.00 41.93 4.44
276 277 2.777845 CGGAATGCGATGAAAATCAACG 59.222 45.455 5.76 5.76 44.02 4.10
277 278 4.014847 TCGGAATGCGATGAAAATCAAC 57.985 40.909 0.00 0.00 0.00 3.18
278 279 3.938334 TCTCGGAATGCGATGAAAATCAA 59.062 39.130 0.00 0.00 0.00 2.57
279 280 3.530535 TCTCGGAATGCGATGAAAATCA 58.469 40.909 0.00 0.00 0.00 2.57
280 281 4.034510 AGTTCTCGGAATGCGATGAAAATC 59.965 41.667 0.00 0.00 0.00 2.17
281 282 3.941483 AGTTCTCGGAATGCGATGAAAAT 59.059 39.130 0.00 0.00 0.00 1.82
282 283 3.334691 AGTTCTCGGAATGCGATGAAAA 58.665 40.909 0.00 0.00 0.00 2.29
283 284 2.972625 AGTTCTCGGAATGCGATGAAA 58.027 42.857 0.00 0.00 0.00 2.69
284 285 2.672961 AGTTCTCGGAATGCGATGAA 57.327 45.000 0.00 1.20 0.00 2.57
285 286 2.672961 AAGTTCTCGGAATGCGATGA 57.327 45.000 0.00 0.00 0.00 2.92
286 287 3.747099 AAAAGTTCTCGGAATGCGATG 57.253 42.857 0.00 0.00 0.00 3.84
287 288 6.316390 AGAAATAAAAGTTCTCGGAATGCGAT 59.684 34.615 0.00 0.00 29.04 4.58
288 289 5.642063 AGAAATAAAAGTTCTCGGAATGCGA 59.358 36.000 0.00 0.00 29.04 5.10
289 290 5.734498 CAGAAATAAAAGTTCTCGGAATGCG 59.266 40.000 0.00 0.00 32.96 4.73
290 291 5.513141 GCAGAAATAAAAGTTCTCGGAATGC 59.487 40.000 0.00 0.00 32.96 3.56
291 292 6.524586 GTGCAGAAATAAAAGTTCTCGGAATG 59.475 38.462 0.00 0.00 32.96 2.67
292 293 6.206634 TGTGCAGAAATAAAAGTTCTCGGAAT 59.793 34.615 0.00 0.00 32.96 3.01
293 294 5.529430 TGTGCAGAAATAAAAGTTCTCGGAA 59.471 36.000 0.00 0.00 32.96 4.30
294 295 5.060506 TGTGCAGAAATAAAAGTTCTCGGA 58.939 37.500 0.00 0.00 32.96 4.55
295 296 5.356882 TGTGCAGAAATAAAAGTTCTCGG 57.643 39.130 0.00 0.00 32.96 4.63
296 297 7.678194 TTTTGTGCAGAAATAAAAGTTCTCG 57.322 32.000 10.13 0.00 32.96 4.04
297 298 8.868916 TGTTTTTGTGCAGAAATAAAAGTTCTC 58.131 29.630 10.13 0.00 32.96 2.87
298 299 8.770438 TGTTTTTGTGCAGAAATAAAAGTTCT 57.230 26.923 10.13 0.00 35.69 3.01
299 300 9.261318 GTTGTTTTTGTGCAGAAATAAAAGTTC 57.739 29.630 10.13 0.00 0.00 3.01
300 301 8.778358 TGTTGTTTTTGTGCAGAAATAAAAGTT 58.222 25.926 10.13 0.00 0.00 2.66
301 302 8.227119 GTGTTGTTTTTGTGCAGAAATAAAAGT 58.773 29.630 10.13 0.00 0.00 2.66
302 303 7.691877 GGTGTTGTTTTTGTGCAGAAATAAAAG 59.308 33.333 10.13 0.00 0.00 2.27
303 304 7.173218 TGGTGTTGTTTTTGTGCAGAAATAAAA 59.827 29.630 10.13 4.13 0.00 1.52
304 305 6.650807 TGGTGTTGTTTTTGTGCAGAAATAAA 59.349 30.769 10.13 0.00 0.00 1.40
305 306 6.091441 GTGGTGTTGTTTTTGTGCAGAAATAA 59.909 34.615 10.13 5.07 0.00 1.40
306 307 5.578727 GTGGTGTTGTTTTTGTGCAGAAATA 59.421 36.000 10.13 2.40 0.00 1.40
307 308 4.391523 GTGGTGTTGTTTTTGTGCAGAAAT 59.608 37.500 10.13 0.00 0.00 2.17
308 309 3.743396 GTGGTGTTGTTTTTGTGCAGAAA 59.257 39.130 4.66 4.66 0.00 2.52
309 310 3.321497 GTGGTGTTGTTTTTGTGCAGAA 58.679 40.909 0.00 0.00 0.00 3.02
310 311 2.669670 CGTGGTGTTGTTTTTGTGCAGA 60.670 45.455 0.00 0.00 0.00 4.26
311 312 1.653114 CGTGGTGTTGTTTTTGTGCAG 59.347 47.619 0.00 0.00 0.00 4.41
312 313 1.670087 CCGTGGTGTTGTTTTTGTGCA 60.670 47.619 0.00 0.00 0.00 4.57
313 314 0.995728 CCGTGGTGTTGTTTTTGTGC 59.004 50.000 0.00 0.00 0.00 4.57
314 315 2.355717 ACCGTGGTGTTGTTTTTGTG 57.644 45.000 0.00 0.00 0.00 3.33
315 316 3.083293 ACTACCGTGGTGTTGTTTTTGT 58.917 40.909 0.72 0.00 0.00 2.83
316 317 3.768468 ACTACCGTGGTGTTGTTTTTG 57.232 42.857 0.72 0.00 0.00 2.44
317 318 4.787260 AAACTACCGTGGTGTTGTTTTT 57.213 36.364 0.72 0.00 39.85 1.94
318 319 4.787260 AAAACTACCGTGGTGTTGTTTT 57.213 36.364 18.03 18.03 43.93 2.43
319 320 3.673866 GCAAAACTACCGTGGTGTTGTTT 60.674 43.478 16.73 7.62 42.94 2.83
320 321 2.159352 GCAAAACTACCGTGGTGTTGTT 60.159 45.455 16.73 1.86 35.15 2.83
321 322 1.402613 GCAAAACTACCGTGGTGTTGT 59.597 47.619 16.73 0.00 35.15 3.32
322 323 1.673920 AGCAAAACTACCGTGGTGTTG 59.326 47.619 12.45 12.45 35.62 3.33
323 324 1.673920 CAGCAAAACTACCGTGGTGTT 59.326 47.619 0.72 1.74 36.31 3.32
324 325 1.134340 TCAGCAAAACTACCGTGGTGT 60.134 47.619 0.72 0.00 40.69 4.16
325 326 1.588674 TCAGCAAAACTACCGTGGTG 58.411 50.000 0.72 0.00 41.10 4.17
326 327 2.335316 TTCAGCAAAACTACCGTGGT 57.665 45.000 0.00 0.00 0.00 4.16
327 328 3.368495 GTTTTCAGCAAAACTACCGTGG 58.632 45.455 5.40 0.00 45.53 4.94
342 343 0.878523 CCGGACTGACGCTGTTTTCA 60.879 55.000 0.00 0.00 0.00 2.69
343 344 1.566018 CCCGGACTGACGCTGTTTTC 61.566 60.000 0.73 0.00 0.00 2.29
344 345 1.597027 CCCGGACTGACGCTGTTTT 60.597 57.895 0.73 0.00 0.00 2.43
345 346 2.030562 CCCGGACTGACGCTGTTT 59.969 61.111 0.73 0.00 0.00 2.83
346 347 1.466025 TAACCCGGACTGACGCTGTT 61.466 55.000 0.73 0.00 33.80 3.16
347 348 1.255667 ATAACCCGGACTGACGCTGT 61.256 55.000 0.73 0.00 0.00 4.40
348 349 0.108329 AATAACCCGGACTGACGCTG 60.108 55.000 0.73 0.00 0.00 5.18
349 350 0.611714 AAATAACCCGGACTGACGCT 59.388 50.000 0.73 0.00 0.00 5.07
350 351 1.004595 GAAATAACCCGGACTGACGC 58.995 55.000 0.73 0.00 0.00 5.19
351 352 2.667473 AGAAATAACCCGGACTGACG 57.333 50.000 0.73 0.00 0.00 4.35
352 353 5.667466 TGATTAGAAATAACCCGGACTGAC 58.333 41.667 0.73 0.00 0.00 3.51
353 354 5.943349 TGATTAGAAATAACCCGGACTGA 57.057 39.130 0.73 0.00 0.00 3.41
354 355 6.995511 TTTGATTAGAAATAACCCGGACTG 57.004 37.500 0.73 0.00 0.00 3.51
355 356 7.343357 TGATTTGATTAGAAATAACCCGGACT 58.657 34.615 0.73 0.00 0.00 3.85
356 357 7.562454 TGATTTGATTAGAAATAACCCGGAC 57.438 36.000 0.73 0.00 0.00 4.79
357 358 9.280174 GTATGATTTGATTAGAAATAACCCGGA 57.720 33.333 0.73 0.00 0.00 5.14
358 359 8.512138 GGTATGATTTGATTAGAAATAACCCGG 58.488 37.037 0.00 0.00 0.00 5.73
359 360 9.062524 TGGTATGATTTGATTAGAAATAACCCG 57.937 33.333 0.00 0.00 29.58 5.28
441 442 6.422776 AATGATGTTTGATACGTCTCCAAC 57.577 37.500 10.00 10.00 42.27 3.77
442 443 9.996554 ATATAATGATGTTTGATACGTCTCCAA 57.003 29.630 0.00 0.00 42.27 3.53
443 444 9.639601 GATATAATGATGTTTGATACGTCTCCA 57.360 33.333 0.00 0.00 42.27 3.86
444 445 9.862371 AGATATAATGATGTTTGATACGTCTCC 57.138 33.333 0.00 0.00 42.27 3.71
459 460 9.842775 TTGCTTTGAGTCAGAAGATATAATGAT 57.157 29.630 15.12 0.00 0.00 2.45
470 471 6.203530 CAGTGATTACTTGCTTTGAGTCAGAA 59.796 38.462 0.00 0.00 34.07 3.02
473 474 5.610398 TCAGTGATTACTTGCTTTGAGTCA 58.390 37.500 0.00 0.00 34.07 3.41
532 533 9.330063 CTGCTAAATATTTAATCTCACTGACCA 57.670 33.333 9.15 0.00 0.00 4.02
533 534 9.331282 ACTGCTAAATATTTAATCTCACTGACC 57.669 33.333 9.15 0.00 0.00 4.02
559 561 9.624697 CGGAAATGAGATTACAATTGAAAAGAA 57.375 29.630 13.59 0.00 0.00 2.52
576 578 0.721718 GCACGACCTTCGGAAATGAG 59.278 55.000 0.03 0.00 45.59 2.90
583 585 0.670546 ATTGACAGCACGACCTTCGG 60.671 55.000 0.03 0.00 45.59 4.30
617 619 1.604604 AACCAAACGTGACCATCTGG 58.395 50.000 0.00 0.00 42.17 3.86
618 620 2.858260 GCAAACCAAACGTGACCATCTG 60.858 50.000 0.00 0.00 0.00 2.90
619 621 1.336755 GCAAACCAAACGTGACCATCT 59.663 47.619 0.00 0.00 0.00 2.90
620 622 1.601914 GGCAAACCAAACGTGACCATC 60.602 52.381 0.00 0.00 35.26 3.51
621 623 0.387565 GGCAAACCAAACGTGACCAT 59.612 50.000 0.00 0.00 35.26 3.55
623 625 1.066752 GGGCAAACCAAACGTGACC 59.933 57.895 0.00 0.00 39.85 4.02
649 679 3.741388 CGAGTGGGATACAATTCAGGTCC 60.741 52.174 0.00 0.00 39.74 4.46
673 704 8.542132 CCAATTTATATTCAATCAAAAGCCACG 58.458 33.333 0.00 0.00 0.00 4.94
840 889 3.583276 AATTCGTCGCGGGTGCTGA 62.583 57.895 6.13 0.00 39.65 4.26
841 890 3.083600 GAATTCGTCGCGGGTGCTG 62.084 63.158 6.13 0.00 39.65 4.41
842 891 2.813908 GAATTCGTCGCGGGTGCT 60.814 61.111 6.13 0.00 39.65 4.40
843 892 3.861263 GGAATTCGTCGCGGGTGC 61.861 66.667 6.13 0.00 37.91 5.01
844 893 3.550992 CGGAATTCGTCGCGGGTG 61.551 66.667 6.13 0.00 0.00 4.61
868 919 1.859080 GCGGATCTATCTTTCGCGTTT 59.141 47.619 5.77 0.00 37.12 3.60
947 998 1.154654 GTTTCGCACTTCCGCTTCG 60.155 57.895 0.00 0.00 0.00 3.79
981 1032 4.631740 TCTCCCTGCCCGTGTGGA 62.632 66.667 0.00 0.00 37.49 4.02
1162 1220 4.191015 GCGGGGATTGGGGGAGTC 62.191 72.222 0.00 0.00 0.00 3.36
1238 1296 2.746671 CCTGGTGCTGCTGCTGAG 60.747 66.667 17.00 9.15 40.48 3.35
1561 1664 7.416664 GGCAGCTAAAATTCCACATAGATCAAA 60.417 37.037 0.00 0.00 0.00 2.69
1616 1746 5.715439 ATCCACCAATGACCTGAATCTAA 57.285 39.130 0.00 0.00 0.00 2.10
1617 1747 5.715439 AATCCACCAATGACCTGAATCTA 57.285 39.130 0.00 0.00 0.00 1.98
1618 1748 4.598036 AATCCACCAATGACCTGAATCT 57.402 40.909 0.00 0.00 0.00 2.40
1619 1749 5.440610 AGTAATCCACCAATGACCTGAATC 58.559 41.667 0.00 0.00 0.00 2.52
1620 1750 5.456921 AGTAATCCACCAATGACCTGAAT 57.543 39.130 0.00 0.00 0.00 2.57
1639 1798 2.706723 TGTTGGGGCTTCACAAGTAGTA 59.293 45.455 0.00 0.00 0.00 1.82
1657 1816 8.409358 AGTAGCAATTCCAAAAATCTACTGTT 57.591 30.769 0.00 0.00 35.38 3.16
1691 1851 4.591321 AGAACCACCACAATACCATGAT 57.409 40.909 0.00 0.00 0.00 2.45
1692 1852 4.380843 AAGAACCACCACAATACCATGA 57.619 40.909 0.00 0.00 0.00 3.07
1693 1853 5.243730 AGAAAAGAACCACCACAATACCATG 59.756 40.000 0.00 0.00 0.00 3.66
1694 1854 5.393866 AGAAAAGAACCACCACAATACCAT 58.606 37.500 0.00 0.00 0.00 3.55
1695 1855 4.798882 AGAAAAGAACCACCACAATACCA 58.201 39.130 0.00 0.00 0.00 3.25
1696 1856 6.884836 AGATAGAAAAGAACCACCACAATACC 59.115 38.462 0.00 0.00 0.00 2.73
1697 1857 7.923414 AGATAGAAAAGAACCACCACAATAC 57.077 36.000 0.00 0.00 0.00 1.89
1830 2085 5.958987 AGCCTAATTGTTGAGTAGTAGGAGT 59.041 40.000 0.00 0.00 31.53 3.85
1831 2086 6.472686 AGCCTAATTGTTGAGTAGTAGGAG 57.527 41.667 0.00 0.00 31.53 3.69
1833 2088 6.879400 AGAAGCCTAATTGTTGAGTAGTAGG 58.121 40.000 0.00 0.00 32.81 3.18
1836 2092 6.819146 GCTAAGAAGCCTAATTGTTGAGTAGT 59.181 38.462 0.00 0.00 43.40 2.73
1901 4442 9.573166 TTCAGCAGCAACCAATAGTAATAATAT 57.427 29.630 0.00 0.00 0.00 1.28
1902 4443 8.836413 GTTCAGCAGCAACCAATAGTAATAATA 58.164 33.333 0.00 0.00 0.00 0.98
1903 4444 7.339212 TGTTCAGCAGCAACCAATAGTAATAAT 59.661 33.333 0.00 0.00 0.00 1.28
1904 4445 6.657117 TGTTCAGCAGCAACCAATAGTAATAA 59.343 34.615 0.00 0.00 0.00 1.40
1906 4447 5.009631 TGTTCAGCAGCAACCAATAGTAAT 58.990 37.500 0.00 0.00 0.00 1.89
1907 4448 4.393834 TGTTCAGCAGCAACCAATAGTAA 58.606 39.130 0.00 0.00 0.00 2.24
1908 4449 4.014569 TGTTCAGCAGCAACCAATAGTA 57.985 40.909 0.00 0.00 0.00 1.82
1909 4450 2.862541 TGTTCAGCAGCAACCAATAGT 58.137 42.857 0.00 0.00 0.00 2.12
1910 4451 3.004629 TGTTGTTCAGCAGCAACCAATAG 59.995 43.478 0.00 0.00 42.91 1.73
2093 4729 7.545265 CAGAGGTCTAGATGAAAAAGAGAACAG 59.455 40.741 0.00 0.00 0.00 3.16
2198 5039 8.617809 ACAAGATCGTGCTTTTTCTTACTTAAA 58.382 29.630 8.68 0.00 0.00 1.52
2216 5057 1.648504 TCAGCATCTGCACAAGATCG 58.351 50.000 4.79 0.00 44.24 3.69
2252 5096 2.923020 CACAAGTGGCAGTCAAAACAAC 59.077 45.455 0.00 0.00 0.00 3.32
2285 5129 5.513233 ACAGGGAATGAAGAACATAGCAAT 58.487 37.500 0.00 0.00 38.38 3.56
2311 5155 3.388024 AGTCACTTAAGCAGACAGGAACA 59.612 43.478 23.01 0.00 34.80 3.18
2330 5174 3.941483 CACATGGTATTCAAGGTCCAGTC 59.059 47.826 0.00 0.00 33.33 3.51
2335 5179 7.716998 ACTGAATATCACATGGTATTCAAGGTC 59.283 37.037 21.99 1.98 43.10 3.85
2359 5203 1.120530 ACCTGAAGTTGTCGACCACT 58.879 50.000 16.06 16.06 0.00 4.00
2461 5341 9.120538 GATGGGATAGCAAGTCTACAATTTTTA 57.879 33.333 0.00 0.00 0.00 1.52
2472 5352 3.133721 ACACTCAGATGGGATAGCAAGTC 59.866 47.826 0.00 0.00 0.00 3.01
2524 5404 9.347934 CATTAGAAACCGTTGCATATTTAAACA 57.652 29.630 0.00 0.00 0.00 2.83
2589 5473 2.373169 TGCAGAACTCTTCCTGTCCATT 59.627 45.455 0.00 0.00 33.19 3.16
2643 5540 6.964464 TGAAAGCTACTATAAATTCCACCCA 58.036 36.000 0.00 0.00 0.00 4.51
2667 5564 7.500559 GGGAGTATTTGATAAAGAGACATGCTT 59.499 37.037 0.00 0.00 0.00 3.91
2669 5566 6.995091 AGGGAGTATTTGATAAAGAGACATGC 59.005 38.462 0.00 0.00 0.00 4.06
2670 5567 8.428063 AGAGGGAGTATTTGATAAAGAGACATG 58.572 37.037 0.00 0.00 0.00 3.21
2671 5568 8.428063 CAGAGGGAGTATTTGATAAAGAGACAT 58.572 37.037 0.00 0.00 0.00 3.06
2673 5570 7.787028 ACAGAGGGAGTATTTGATAAAGAGAC 58.213 38.462 0.00 0.00 0.00 3.36
2702 5787 9.525409 TTAGTGACCTAAACGCTCTTATATTTC 57.475 33.333 0.00 0.00 30.20 2.17
2703 5788 9.880157 TTTAGTGACCTAAACGCTCTTATATTT 57.120 29.630 0.00 0.00 38.05 1.40
2721 5806 7.028361 AGTAGTGATCTAAACGCTTTAGTGAC 58.972 38.462 13.52 10.12 42.49 3.67
2741 5826 7.393841 AGAGCGTTTAGATCACTAAAGTAGT 57.606 36.000 0.00 0.00 45.42 2.73
2742 5827 9.953697 ATAAGAGCGTTTAGATCACTAAAGTAG 57.046 33.333 0.00 0.00 45.42 2.57
2772 5857 9.517868 TTTTACAAAATATTCCCTCCGTAAAGA 57.482 29.630 0.00 0.00 31.46 2.52
2822 5948 6.092944 CGGAGTATAACAAGGTTACATTGCAA 59.907 38.462 9.75 0.00 0.00 4.08
2843 5969 3.933332 GAGTCACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 33.84 4.63
2845 5971 2.671396 CGAGTCACTTATTTTGGGACGG 59.329 50.000 0.00 0.00 33.84 4.79
2846 5972 3.367025 GTCGAGTCACTTATTTTGGGACG 59.633 47.826 0.00 0.00 33.84 4.79
2849 5975 5.238650 ACAAAGTCGAGTCACTTATTTTGGG 59.761 40.000 11.39 0.00 35.45 4.12
2850 5976 6.300354 ACAAAGTCGAGTCACTTATTTTGG 57.700 37.500 11.39 0.00 35.45 3.28
2851 5977 8.073355 AGTACAAAGTCGAGTCACTTATTTTG 57.927 34.615 0.00 7.24 35.45 2.44
2852 5978 9.754382 TTAGTACAAAGTCGAGTCACTTATTTT 57.246 29.630 0.00 0.00 35.45 1.82
2854 5980 8.574737 AGTTAGTACAAAGTCGAGTCACTTATT 58.425 33.333 0.00 2.93 35.45 1.40
2856 5982 7.502120 AGTTAGTACAAAGTCGAGTCACTTA 57.498 36.000 0.00 0.00 35.45 2.24
2857 5983 6.388435 AGTTAGTACAAAGTCGAGTCACTT 57.612 37.500 0.00 3.11 38.30 3.16
2858 5984 6.388435 AAGTTAGTACAAAGTCGAGTCACT 57.612 37.500 0.00 0.00 0.00 3.41
2859 5985 8.739649 AATAAGTTAGTACAAAGTCGAGTCAC 57.260 34.615 0.00 0.00 0.00 3.67
2862 5988 8.985805 CCAAAATAAGTTAGTACAAAGTCGAGT 58.014 33.333 0.00 0.00 0.00 4.18
2863 5989 8.440833 CCCAAAATAAGTTAGTACAAAGTCGAG 58.559 37.037 0.00 0.00 0.00 4.04
2865 5991 8.225777 GTCCCAAAATAAGTTAGTACAAAGTCG 58.774 37.037 0.00 0.00 0.00 4.18
2866 5992 8.225777 CGTCCCAAAATAAGTTAGTACAAAGTC 58.774 37.037 0.00 0.00 0.00 3.01
2867 5993 7.173735 CCGTCCCAAAATAAGTTAGTACAAAGT 59.826 37.037 0.00 0.00 0.00 2.66
2868 5994 7.388500 TCCGTCCCAAAATAAGTTAGTACAAAG 59.612 37.037 0.00 0.00 0.00 2.77
2872 5998 6.259387 CCATCCGTCCCAAAATAAGTTAGTAC 59.741 42.308 0.00 0.00 0.00 2.73
2873 5999 6.156602 TCCATCCGTCCCAAAATAAGTTAGTA 59.843 38.462 0.00 0.00 0.00 1.82
2874 6000 5.045432 TCCATCCGTCCCAAAATAAGTTAGT 60.045 40.000 0.00 0.00 0.00 2.24
2875 6001 5.433526 TCCATCCGTCCCAAAATAAGTTAG 58.566 41.667 0.00 0.00 0.00 2.34
2876 6002 5.045432 ACTCCATCCGTCCCAAAATAAGTTA 60.045 40.000 0.00 0.00 0.00 2.24
2877 6003 4.263771 ACTCCATCCGTCCCAAAATAAGTT 60.264 41.667 0.00 0.00 0.00 2.66
2878 6004 3.265995 ACTCCATCCGTCCCAAAATAAGT 59.734 43.478 0.00 0.00 0.00 2.24
2879 6005 3.886123 ACTCCATCCGTCCCAAAATAAG 58.114 45.455 0.00 0.00 0.00 1.73
2880 6006 5.104277 ACATACTCCATCCGTCCCAAAATAA 60.104 40.000 0.00 0.00 0.00 1.40
2881 6007 4.410883 ACATACTCCATCCGTCCCAAAATA 59.589 41.667 0.00 0.00 0.00 1.40
2882 6008 3.202151 ACATACTCCATCCGTCCCAAAAT 59.798 43.478 0.00 0.00 0.00 1.82
2883 6009 2.574369 ACATACTCCATCCGTCCCAAAA 59.426 45.455 0.00 0.00 0.00 2.44
2884 6010 2.193127 ACATACTCCATCCGTCCCAAA 58.807 47.619 0.00 0.00 0.00 3.28
2885 6011 1.874129 ACATACTCCATCCGTCCCAA 58.126 50.000 0.00 0.00 0.00 4.12
2886 6012 2.759839 TACATACTCCATCCGTCCCA 57.240 50.000 0.00 0.00 0.00 4.37
2887 6013 5.479375 TCTTTATACATACTCCATCCGTCCC 59.521 44.000 0.00 0.00 0.00 4.46
2888 6014 6.208994 ACTCTTTATACATACTCCATCCGTCC 59.791 42.308 0.00 0.00 0.00 4.79
2889 6015 7.216973 ACTCTTTATACATACTCCATCCGTC 57.783 40.000 0.00 0.00 0.00 4.79
2890 6016 7.598759 AACTCTTTATACATACTCCATCCGT 57.401 36.000 0.00 0.00 0.00 4.69
2891 6017 8.573885 TGTAACTCTTTATACATACTCCATCCG 58.426 37.037 0.00 0.00 0.00 4.18
2892 6018 9.694137 GTGTAACTCTTTATACATACTCCATCC 57.306 37.037 0.00 0.00 34.77 3.51
2895 6021 9.251440 ACTGTGTAACTCTTTATACATACTCCA 57.749 33.333 0.00 0.00 38.29 3.86
2957 6083 3.247648 CACCGCGGATAATTACTCAAAGG 59.752 47.826 35.90 0.00 0.00 3.11
3407 6558 9.613957 GAAATCATGATCTATTGCTGAAATGAG 57.386 33.333 9.06 0.00 29.99 2.90
3535 6701 2.462456 AGCACACAGTTCGATCACAT 57.538 45.000 0.00 0.00 0.00 3.21
3557 6723 5.010012 AGTGGTTTTAGCTCAAAATGGACAG 59.990 40.000 0.00 0.00 38.36 3.51
3583 6751 3.596214 AGTGTTGCCCTGTAAGATAACG 58.404 45.455 0.00 0.00 34.07 3.18
3718 6890 4.496336 GCAGCAGGGGAAGGCGAT 62.496 66.667 0.00 0.00 34.54 4.58
3739 6911 1.915266 CACAGAGGAGGAGCCACCA 60.915 63.158 5.78 0.00 42.04 4.17
3748 6920 1.638529 AGTCCCTGAACACAGAGGAG 58.361 55.000 0.00 0.00 34.34 3.69
3775 6947 2.752903 GCGGAATTATGTTGAACTGGGT 59.247 45.455 0.00 0.00 0.00 4.51
3820 6992 2.890808 ATTCACGGCGACTCATGTAT 57.109 45.000 16.62 0.00 0.00 2.29
3995 7177 7.324178 AGTGATATTATATTTCGACCTCAGCC 58.676 38.462 0.00 0.00 0.00 4.85
4033 7215 2.760385 GGACTGGGACGGAGGGAG 60.760 72.222 0.00 0.00 38.67 4.30
4034 7216 4.393778 GGGACTGGGACGGAGGGA 62.394 72.222 0.00 0.00 38.67 4.20
4035 7217 2.599139 TATGGGACTGGGACGGAGGG 62.599 65.000 0.00 0.00 38.67 4.30
4036 7218 0.689745 TTATGGGACTGGGACGGAGG 60.690 60.000 0.00 0.00 38.67 4.30
4037 7219 1.424638 ATTATGGGACTGGGACGGAG 58.575 55.000 0.00 0.00 38.67 4.63
4038 7220 2.779429 TATTATGGGACTGGGACGGA 57.221 50.000 0.00 0.00 38.67 4.69
4039 7221 4.775780 TCTTATATTATGGGACTGGGACGG 59.224 45.833 0.00 0.00 42.99 4.79
4040 7222 5.995565 TCTTATATTATGGGACTGGGACG 57.004 43.478 0.00 0.00 0.00 4.79
4041 7223 7.317722 AGTTCTTATATTATGGGACTGGGAC 57.682 40.000 0.00 0.00 0.00 4.46
4042 7224 7.947782 AAGTTCTTATATTATGGGACTGGGA 57.052 36.000 0.00 0.00 0.00 4.37
4043 7225 8.996651 AAAAGTTCTTATATTATGGGACTGGG 57.003 34.615 0.00 0.00 0.00 4.45
4072 7254 4.435425 TGTTTTTGACAGTAGCGTAGTGT 58.565 39.130 5.53 5.53 44.60 3.55
4073 7255 5.591643 ATGTTTTTGACAGTAGCGTAGTG 57.408 39.130 0.00 0.00 42.62 2.74
4074 7256 5.989777 AGAATGTTTTTGACAGTAGCGTAGT 59.010 36.000 0.00 0.00 42.62 2.73
4075 7257 6.467723 AGAATGTTTTTGACAGTAGCGTAG 57.532 37.500 0.00 0.00 42.62 3.51
4076 7258 6.854496 AAGAATGTTTTTGACAGTAGCGTA 57.146 33.333 0.00 0.00 42.62 4.42
4077 7259 5.751243 AAGAATGTTTTTGACAGTAGCGT 57.249 34.783 0.00 0.00 42.62 5.07
4078 7260 9.988350 AATATAAGAATGTTTTTGACAGTAGCG 57.012 29.630 0.00 0.00 42.62 4.26
4090 7272 9.799106 CCTCTGTCCCATAATATAAGAATGTTT 57.201 33.333 0.00 0.00 0.00 2.83
4091 7273 8.386264 CCCTCTGTCCCATAATATAAGAATGTT 58.614 37.037 0.00 0.00 0.00 2.71
4092 7274 7.739444 TCCCTCTGTCCCATAATATAAGAATGT 59.261 37.037 0.00 0.00 0.00 2.71
4093 7275 8.150827 TCCCTCTGTCCCATAATATAAGAATG 57.849 38.462 0.00 0.00 0.00 2.67
4094 7276 7.964293 ACTCCCTCTGTCCCATAATATAAGAAT 59.036 37.037 0.00 0.00 0.00 2.40
4095 7277 7.313731 ACTCCCTCTGTCCCATAATATAAGAA 58.686 38.462 0.00 0.00 0.00 2.52
4096 7278 6.875469 ACTCCCTCTGTCCCATAATATAAGA 58.125 40.000 0.00 0.00 0.00 2.10
4097 7279 8.116669 TCTACTCCCTCTGTCCCATAATATAAG 58.883 40.741 0.00 0.00 0.00 1.73
4098 7280 8.008104 TCTACTCCCTCTGTCCCATAATATAA 57.992 38.462 0.00 0.00 0.00 0.98
4099 7281 7.599353 TCTACTCCCTCTGTCCCATAATATA 57.401 40.000 0.00 0.00 0.00 0.86
4100 7282 6.485388 TCTACTCCCTCTGTCCCATAATAT 57.515 41.667 0.00 0.00 0.00 1.28
4101 7283 5.942977 TCTACTCCCTCTGTCCCATAATA 57.057 43.478 0.00 0.00 0.00 0.98
4102 7284 4.834406 TCTACTCCCTCTGTCCCATAAT 57.166 45.455 0.00 0.00 0.00 1.28
4103 7285 4.620086 TTCTACTCCCTCTGTCCCATAA 57.380 45.455 0.00 0.00 0.00 1.90
4104 7286 4.834406 ATTCTACTCCCTCTGTCCCATA 57.166 45.455 0.00 0.00 0.00 2.74
4105 7287 3.715648 ATTCTACTCCCTCTGTCCCAT 57.284 47.619 0.00 0.00 0.00 4.00
4106 7288 3.532232 AGTATTCTACTCCCTCTGTCCCA 59.468 47.826 0.00 0.00 32.47 4.37
4107 7289 4.187506 AGTATTCTACTCCCTCTGTCCC 57.812 50.000 0.00 0.00 32.47 4.46
4108 7290 4.957327 ACAAGTATTCTACTCCCTCTGTCC 59.043 45.833 0.00 0.00 38.26 4.02
4109 7291 6.532988 AACAAGTATTCTACTCCCTCTGTC 57.467 41.667 0.00 0.00 38.26 3.51
4110 7292 7.288158 GGATAACAAGTATTCTACTCCCTCTGT 59.712 40.741 0.00 0.00 38.26 3.41
4111 7293 7.507616 AGGATAACAAGTATTCTACTCCCTCTG 59.492 40.741 0.00 0.00 38.26 3.35
4112 7294 7.597327 AGGATAACAAGTATTCTACTCCCTCT 58.403 38.462 0.00 0.00 38.26 3.69
4113 7295 7.842887 AGGATAACAAGTATTCTACTCCCTC 57.157 40.000 0.00 0.00 38.26 4.30
4114 7296 9.369672 CTTAGGATAACAAGTATTCTACTCCCT 57.630 37.037 0.00 0.00 38.26 4.20
4115 7297 9.145442 ACTTAGGATAACAAGTATTCTACTCCC 57.855 37.037 0.00 0.00 38.26 4.30
4166 7368 5.681543 GCTCGGAAACTAAAAACAGAACAAG 59.318 40.000 0.00 0.00 0.00 3.16
4167 7369 5.124138 TGCTCGGAAACTAAAAACAGAACAA 59.876 36.000 0.00 0.00 0.00 2.83
4168 7370 4.636648 TGCTCGGAAACTAAAAACAGAACA 59.363 37.500 0.00 0.00 0.00 3.18
4348 7611 9.803315 CTTCAATACAATAGCACTTCTGTAGTA 57.197 33.333 0.00 0.00 34.56 1.82
4377 7640 2.306805 TCCAAACTGATGATGTGCTCCT 59.693 45.455 0.00 0.00 0.00 3.69
4389 7655 8.212312 TGTAGTGGTTATTTTAGTCCAAACTGA 58.788 33.333 0.00 0.00 36.92 3.41
4432 7700 2.061773 CATTTGTTCGAGAGACGCACT 58.938 47.619 0.00 0.00 41.84 4.40
4495 7765 6.267471 ACTCCCATTTGTTGATTGTTACACAT 59.733 34.615 0.00 0.00 0.00 3.21
4619 7889 9.180678 CATTTTTGTTCTTGTTATGTGTACCTC 57.819 33.333 0.00 0.00 0.00 3.85
4700 8037 7.102993 AGAACTGTTTGTTGTTGGCTTTTTAT 58.897 30.769 0.00 0.00 39.30 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.