Multiple sequence alignment - TraesCS4D01G030800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G030800 chr4D 100.000 2675 0 0 1 2675 14513652 14516326 0.000000e+00 4940.0
1 TraesCS4D01G030800 chr4D 95.412 1700 58 9 978 2675 14843541 14841860 0.000000e+00 2689.0
2 TraesCS4D01G030800 chr4D 84.483 1276 148 30 978 2231 14847860 14846613 0.000000e+00 1214.0
3 TraesCS4D01G030800 chr4D 93.638 723 22 7 4 703 14844258 14843537 0.000000e+00 1059.0
4 TraesCS4D01G030800 chr4D 98.909 275 3 0 703 977 245834282 245834556 2.390000e-135 492.0
5 TraesCS4D01G030800 chr4D 98.561 278 4 0 701 978 245837664 245837941 2.390000e-135 492.0
6 TraesCS4D01G030800 chr4D 90.055 181 11 3 189 369 14848359 14848186 7.450000e-56 228.0
7 TraesCS4D01G030800 chr4D 82.075 212 33 5 2440 2646 14910855 14911066 2.740000e-40 176.0
8 TraesCS4D01G030800 chr4D 87.288 118 13 2 586 703 14847971 14847856 1.670000e-27 134.0
9 TraesCS4D01G030800 chr4D 81.319 91 9 4 287 369 14895813 14895903 1.720000e-07 67.6
10 TraesCS4D01G030800 chr3B 91.972 1719 89 31 978 2667 452725280 452726978 0.000000e+00 2364.0
11 TraesCS4D01G030800 chr3B 91.616 823 65 4 978 1800 452721538 452722356 0.000000e+00 1134.0
12 TraesCS4D01G030800 chr3B 92.973 185 7 4 383 566 452724934 452725113 5.680000e-67 265.0
13 TraesCS4D01G030800 chr3B 88.393 224 15 5 149 369 452720991 452721206 2.640000e-65 259.0
14 TraesCS4D01G030800 chr3B 87.444 223 18 5 149 369 452724734 452724948 5.720000e-62 248.0
15 TraesCS4D01G030800 chr3B 92.373 118 4 2 586 703 452721430 452721542 2.130000e-36 163.0
16 TraesCS4D01G030800 chr3B 91.525 118 5 2 586 703 452725172 452725284 9.910000e-35 158.0
17 TraesCS4D01G030800 chr4B 92.951 1064 59 5 978 2041 24690528 24689481 0.000000e+00 1535.0
18 TraesCS4D01G030800 chr4B 85.509 1111 135 16 978 2084 24696739 24695651 0.000000e+00 1136.0
19 TraesCS4D01G030800 chr4B 86.939 1003 112 10 983 1984 24741627 24742611 0.000000e+00 1109.0
20 TraesCS4D01G030800 chr4B 86.508 378 17 10 2009 2361 24689469 24689101 4.180000e-103 385.0
21 TraesCS4D01G030800 chr4B 92.157 204 8 6 383 583 24690880 24690682 5.640000e-72 281.0
22 TraesCS4D01G030800 chr4B 97.458 118 2 1 586 703 24690640 24690524 1.620000e-47 200.0
23 TraesCS4D01G030800 chr4B 82.667 225 17 11 147 369 24691070 24690866 2.120000e-41 180.0
24 TraesCS4D01G030800 chr4B 89.474 133 10 3 2354 2483 24689077 24688946 5.920000e-37 165.0
25 TraesCS4D01G030800 chr4B 91.228 114 5 1 236 344 24703096 24702983 1.660000e-32 150.0
26 TraesCS4D01G030800 chr4A 82.627 1462 183 30 967 2409 586708701 586710110 0.000000e+00 1227.0
27 TraesCS4D01G030800 chr4A 82.305 1458 180 37 967 2409 456459643 456461037 0.000000e+00 1192.0
28 TraesCS4D01G030800 chr4A 88.889 180 7 9 383 562 456459310 456459476 2.700000e-50 209.0
29 TraesCS4D01G030800 chr4A 88.333 180 8 9 383 562 586708368 586708534 1.260000e-48 204.0
30 TraesCS4D01G030800 chr4A 87.218 133 14 3 571 703 586708584 586708713 5.970000e-32 148.0
31 TraesCS4D01G030800 chr4A 88.333 120 10 4 586 703 456456041 456455924 9.980000e-30 141.0
32 TraesCS4D01G030800 chr4A 85.714 133 16 3 571 703 456459526 456459655 1.290000e-28 137.0
33 TraesCS4D01G030800 chr4A 87.500 120 11 4 586 703 586700017 586699900 4.650000e-28 135.0
34 TraesCS4D01G030800 chr6D 98.917 277 3 0 701 977 414540246 414540522 1.850000e-136 496.0
35 TraesCS4D01G030800 chr6D 89.286 280 26 2 701 977 294097070 294097348 5.480000e-92 348.0
36 TraesCS4D01G030800 chr6D 88.849 278 27 2 703 977 294093686 294093962 3.300000e-89 339.0
37 TraesCS4D01G030800 chr3D 98.909 275 3 0 703 977 66561310 66561036 2.390000e-135 492.0
38 TraesCS4D01G030800 chr7D 98.905 274 3 0 704 977 608446413 608446140 8.610000e-135 490.0
39 TraesCS4D01G030800 chr7D 98.905 274 3 0 704 977 608449797 608449524 8.610000e-135 490.0
40 TraesCS4D01G030800 chr1B 91.727 278 19 2 703 977 280692231 280692507 1.500000e-102 383.0
41 TraesCS4D01G030800 chr2D 95.455 44 2 0 101 144 45875390 45875433 1.330000e-08 71.3
42 TraesCS4D01G030800 chr7B 92.000 50 2 2 17 66 109922185 109922138 4.780000e-08 69.4
43 TraesCS4D01G030800 chr2B 92.500 40 3 0 17 56 29725274 29725313 1.030000e-04 58.4
44 TraesCS4D01G030800 chr2B 96.970 33 0 1 1998 2030 797231660 797231691 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G030800 chr4D 14513652 14516326 2674 False 4940.000000 4940 100.000000 1 2675 1 chr4D.!!$F1 2674
1 TraesCS4D01G030800 chr4D 14841860 14848359 6499 True 1064.800000 2689 90.175200 4 2675 5 chr4D.!!$R1 2671
2 TraesCS4D01G030800 chr4D 245834282 245837941 3659 False 492.000000 492 98.735000 701 978 2 chr4D.!!$F4 277
3 TraesCS4D01G030800 chr3B 452720991 452726978 5987 False 655.857143 2364 90.899429 149 2667 7 chr3B.!!$F1 2518
4 TraesCS4D01G030800 chr4B 24695651 24696739 1088 True 1136.000000 1136 85.509000 978 2084 1 chr4B.!!$R1 1106
5 TraesCS4D01G030800 chr4B 24741627 24742611 984 False 1109.000000 1109 86.939000 983 1984 1 chr4B.!!$F1 1001
6 TraesCS4D01G030800 chr4B 24688946 24691070 2124 True 457.666667 1535 90.202500 147 2483 6 chr4B.!!$R3 2336
7 TraesCS4D01G030800 chr4A 586708368 586710110 1742 False 526.333333 1227 86.059333 383 2409 3 chr4A.!!$F2 2026
8 TraesCS4D01G030800 chr4A 456459310 456461037 1727 False 512.666667 1192 85.636000 383 2409 3 chr4A.!!$F1 2026
9 TraesCS4D01G030800 chr6D 294093686 294097348 3662 False 343.500000 348 89.067500 701 977 2 chr6D.!!$F2 276
10 TraesCS4D01G030800 chr7D 608446140 608449797 3657 True 490.000000 490 98.905000 704 977 2 chr7D.!!$R1 273

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
856 941 0.108138 CCGTCCAGTTCCTAGCCAAG 60.108 60.0 0.0 0.0 0.0 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1682 9084 4.335416 TGAGACCATTTTAGGGAAAGCTG 58.665 43.478 0.0 0.0 0.0 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.299582 TGCGGGTAACTAATACTTTTTGC 57.700 39.130 0.00 0.00 34.74 3.68
23 24 4.142859 TGCGGGTAACTAATACTTTTTGCG 60.143 41.667 0.00 0.00 34.74 4.85
24 25 4.093261 GCGGGTAACTAATACTTTTTGCGA 59.907 41.667 0.00 0.00 34.74 5.10
25 26 5.390779 GCGGGTAACTAATACTTTTTGCGAA 60.391 40.000 0.00 0.00 34.74 4.70
26 27 6.017325 CGGGTAACTAATACTTTTTGCGAAC 58.983 40.000 0.00 0.00 34.74 3.95
27 28 6.347563 CGGGTAACTAATACTTTTTGCGAACA 60.348 38.462 0.00 0.00 34.74 3.18
28 29 6.798476 GGGTAACTAATACTTTTTGCGAACAC 59.202 38.462 0.00 0.00 34.74 3.32
29 30 6.517374 GGTAACTAATACTTTTTGCGAACACG 59.483 38.462 0.00 0.00 34.74 4.49
30 31 8.755233 GGTAACTAATACTTTTTGCGAACACGC 61.755 40.741 7.66 7.66 42.15 5.34
40 41 2.494550 CGAACACGCAAAAGGCTTG 58.505 52.632 0.00 0.00 46.47 4.01
44 45 2.872028 CACGCAAAAGGCTTGTGTC 58.128 52.632 18.33 9.93 40.71 3.67
45 46 0.381801 CACGCAAAAGGCTTGTGTCT 59.618 50.000 18.33 1.52 40.71 3.41
46 47 0.663153 ACGCAAAAGGCTTGTGTCTC 59.337 50.000 18.33 1.67 38.63 3.36
47 48 0.384725 CGCAAAAGGCTTGTGTCTCG 60.385 55.000 18.33 9.97 41.67 4.04
48 49 0.944386 GCAAAAGGCTTGTGTCTCGA 59.056 50.000 18.33 0.00 40.25 4.04
49 50 1.537202 GCAAAAGGCTTGTGTCTCGAT 59.463 47.619 18.33 0.00 40.25 3.59
50 51 2.666619 GCAAAAGGCTTGTGTCTCGATG 60.667 50.000 18.33 0.78 40.25 3.84
51 52 2.549754 CAAAAGGCTTGTGTCTCGATGT 59.450 45.455 9.35 0.00 0.00 3.06
52 53 3.678056 AAAGGCTTGTGTCTCGATGTA 57.322 42.857 0.00 0.00 0.00 2.29
53 54 3.895232 AAGGCTTGTGTCTCGATGTAT 57.105 42.857 0.00 0.00 0.00 2.29
54 55 3.895232 AGGCTTGTGTCTCGATGTATT 57.105 42.857 0.00 0.00 0.00 1.89
55 56 5.339008 AAGGCTTGTGTCTCGATGTATTA 57.661 39.130 0.00 0.00 0.00 0.98
56 57 4.938080 AGGCTTGTGTCTCGATGTATTAG 58.062 43.478 0.00 0.00 0.00 1.73
57 58 4.645136 AGGCTTGTGTCTCGATGTATTAGA 59.355 41.667 0.00 0.00 0.00 2.10
58 59 5.127194 AGGCTTGTGTCTCGATGTATTAGAA 59.873 40.000 0.00 0.00 0.00 2.10
59 60 5.460419 GGCTTGTGTCTCGATGTATTAGAAG 59.540 44.000 0.00 0.00 0.00 2.85
60 61 6.266323 GCTTGTGTCTCGATGTATTAGAAGA 58.734 40.000 0.00 0.00 0.00 2.87
61 62 6.416455 GCTTGTGTCTCGATGTATTAGAAGAG 59.584 42.308 0.00 0.00 0.00 2.85
62 63 7.625828 TTGTGTCTCGATGTATTAGAAGAGA 57.374 36.000 0.00 0.00 33.02 3.10
63 64 7.252965 TGTGTCTCGATGTATTAGAAGAGAG 57.747 40.000 0.00 0.00 35.71 3.20
64 65 7.048512 TGTGTCTCGATGTATTAGAAGAGAGA 58.951 38.462 0.00 0.00 35.71 3.10
65 66 7.225734 TGTGTCTCGATGTATTAGAAGAGAGAG 59.774 40.741 0.00 0.00 35.71 3.20
66 67 6.203915 TGTCTCGATGTATTAGAAGAGAGAGC 59.796 42.308 0.00 0.00 35.71 4.09
67 68 6.203915 GTCTCGATGTATTAGAAGAGAGAGCA 59.796 42.308 0.00 0.00 35.71 4.26
68 69 6.768381 TCTCGATGTATTAGAAGAGAGAGCAA 59.232 38.462 0.00 0.00 31.93 3.91
69 70 7.283354 TCTCGATGTATTAGAAGAGAGAGCAAA 59.717 37.037 0.00 0.00 31.93 3.68
70 71 7.197017 TCGATGTATTAGAAGAGAGAGCAAAC 58.803 38.462 0.00 0.00 0.00 2.93
71 72 6.975197 CGATGTATTAGAAGAGAGAGCAAACA 59.025 38.462 0.00 0.00 0.00 2.83
72 73 7.489435 CGATGTATTAGAAGAGAGAGCAAACAA 59.511 37.037 0.00 0.00 0.00 2.83
73 74 9.323985 GATGTATTAGAAGAGAGAGCAAACAAT 57.676 33.333 0.00 0.00 0.00 2.71
75 76 9.587772 TGTATTAGAAGAGAGAGCAAACAATAC 57.412 33.333 0.00 0.00 0.00 1.89
76 77 9.587772 GTATTAGAAGAGAGAGCAAACAATACA 57.412 33.333 0.00 0.00 0.00 2.29
78 79 8.539770 TTAGAAGAGAGAGCAAACAATACAAG 57.460 34.615 0.00 0.00 0.00 3.16
79 80 6.529220 AGAAGAGAGAGCAAACAATACAAGT 58.471 36.000 0.00 0.00 0.00 3.16
80 81 6.995091 AGAAGAGAGAGCAAACAATACAAGTT 59.005 34.615 0.00 0.00 0.00 2.66
81 82 6.793492 AGAGAGAGCAAACAATACAAGTTC 57.207 37.500 0.00 0.00 0.00 3.01
82 83 5.406780 AGAGAGAGCAAACAATACAAGTTCG 59.593 40.000 0.00 0.00 0.00 3.95
83 84 5.057149 AGAGAGCAAACAATACAAGTTCGT 58.943 37.500 0.00 0.00 0.00 3.85
84 85 5.527582 AGAGAGCAAACAATACAAGTTCGTT 59.472 36.000 0.00 0.00 0.00 3.85
85 86 6.038271 AGAGAGCAAACAATACAAGTTCGTTT 59.962 34.615 0.00 0.00 0.00 3.60
86 87 7.225931 AGAGAGCAAACAATACAAGTTCGTTTA 59.774 33.333 0.00 0.00 0.00 2.01
87 88 7.130269 AGAGCAAACAATACAAGTTCGTTTAC 58.870 34.615 0.00 0.00 0.00 2.01
88 89 6.787225 AGCAAACAATACAAGTTCGTTTACA 58.213 32.000 0.00 0.00 0.00 2.41
89 90 6.910433 AGCAAACAATACAAGTTCGTTTACAG 59.090 34.615 0.00 0.00 0.00 2.74
90 91 6.344702 GCAAACAATACAAGTTCGTTTACAGC 60.345 38.462 0.00 0.00 0.00 4.40
91 92 6.613755 AACAATACAAGTTCGTTTACAGCT 57.386 33.333 0.00 0.00 0.00 4.24
92 93 6.613755 ACAATACAAGTTCGTTTACAGCTT 57.386 33.333 0.00 0.00 0.00 3.74
93 94 6.427150 ACAATACAAGTTCGTTTACAGCTTG 58.573 36.000 0.00 0.00 41.40 4.01
95 96 4.957759 ACAAGTTCGTTTACAGCTTGTT 57.042 36.364 0.00 0.00 44.79 2.83
96 97 4.658071 ACAAGTTCGTTTACAGCTTGTTG 58.342 39.130 0.00 0.00 44.79 3.33
97 98 3.334272 AGTTCGTTTACAGCTTGTTGC 57.666 42.857 0.00 0.00 43.29 4.17
98 99 8.824157 TACAAGTTCGTTTACAGCTTGTTGCG 62.824 42.308 12.43 0.00 44.79 4.85
106 107 4.980903 GCTTGTTGCGGCACCACG 62.981 66.667 0.05 0.00 0.00 4.94
107 108 3.276091 CTTGTTGCGGCACCACGA 61.276 61.111 0.05 0.00 35.47 4.35
108 109 2.824489 TTGTTGCGGCACCACGAA 60.824 55.556 0.05 0.00 35.47 3.85
109 110 2.128853 CTTGTTGCGGCACCACGAAT 62.129 55.000 0.05 0.00 35.47 3.34
110 111 2.126888 GTTGCGGCACCACGAATG 60.127 61.111 0.05 0.00 35.47 2.67
119 120 3.803082 CCACGAATGGCGCTGGTG 61.803 66.667 7.64 5.24 46.04 4.17
120 121 3.803082 CACGAATGGCGCTGGTGG 61.803 66.667 7.64 0.00 46.04 4.61
121 122 4.329545 ACGAATGGCGCTGGTGGT 62.330 61.111 7.64 0.00 46.04 4.16
122 123 2.125310 CGAATGGCGCTGGTGGTA 60.125 61.111 7.64 0.00 0.00 3.25
123 124 2.173669 CGAATGGCGCTGGTGGTAG 61.174 63.158 7.64 0.00 0.00 3.18
124 125 2.438434 AATGGCGCTGGTGGTAGC 60.438 61.111 7.64 0.00 40.29 3.58
127 128 4.410400 GGCGCTGGTGGTAGCCTT 62.410 66.667 7.64 0.00 45.67 4.35
128 129 2.582436 GCGCTGGTGGTAGCCTTA 59.418 61.111 0.00 0.00 40.59 2.69
129 130 1.814169 GCGCTGGTGGTAGCCTTAC 60.814 63.158 0.00 0.00 40.59 2.34
130 131 1.518572 CGCTGGTGGTAGCCTTACG 60.519 63.158 0.00 0.00 40.59 3.18
131 132 1.153429 GCTGGTGGTAGCCTTACGG 60.153 63.158 0.00 0.00 37.73 4.02
132 133 1.520666 CTGGTGGTAGCCTTACGGG 59.479 63.158 0.00 0.00 38.36 5.28
133 134 0.974010 CTGGTGGTAGCCTTACGGGA 60.974 60.000 0.00 0.00 37.23 5.14
134 135 0.974010 TGGTGGTAGCCTTACGGGAG 60.974 60.000 0.00 0.00 37.23 4.30
135 136 1.683418 GGTGGTAGCCTTACGGGAGG 61.683 65.000 2.22 2.22 39.93 4.30
136 137 1.382146 TGGTAGCCTTACGGGAGGG 60.382 63.158 8.23 0.00 37.29 4.30
137 138 2.804912 GGTAGCCTTACGGGAGGGC 61.805 68.421 4.95 4.95 45.57 5.19
138 139 2.445274 TAGCCTTACGGGAGGGCC 60.445 66.667 10.16 0.00 46.31 5.80
164 165 7.378461 CGCCGCAAACTAATATGATATTTTTGT 59.622 33.333 17.15 7.71 0.00 2.83
165 166 8.690840 GCCGCAAACTAATATGATATTTTTGTC 58.309 33.333 17.15 11.62 0.00 3.18
228 231 6.163135 ACTAATAGTTGCGCTTATCCTTCT 57.837 37.500 9.73 0.00 0.00 2.85
229 232 7.286215 ACTAATAGTTGCGCTTATCCTTCTA 57.714 36.000 9.73 0.38 0.00 2.10
260 263 5.413523 GCCATTTTTGCCTGAATTTCTGAAT 59.586 36.000 4.98 0.00 0.00 2.57
279 282 7.429633 TCTGAATCCTAGACGAAATCAAGATC 58.570 38.462 0.00 0.00 0.00 2.75
284 287 5.299531 TCCTAGACGAAATCAAGATCATCGT 59.700 40.000 17.92 17.92 42.19 3.73
291 294 6.253727 ACGAAATCAAGATCATCGTTGAGTAC 59.746 38.462 14.30 0.00 38.96 2.73
344 347 2.620115 CCAAGCGCAATACTCCATTGAT 59.380 45.455 11.47 0.00 45.99 2.57
345 348 3.067180 CCAAGCGCAATACTCCATTGATT 59.933 43.478 11.47 0.00 45.99 2.57
347 350 4.297299 AGCGCAATACTCCATTGATTTG 57.703 40.909 11.47 0.00 45.99 2.32
348 351 3.947196 AGCGCAATACTCCATTGATTTGA 59.053 39.130 11.47 0.00 45.99 2.69
349 352 4.036027 AGCGCAATACTCCATTGATTTGAG 59.964 41.667 11.47 0.00 45.99 3.02
350 353 4.035558 GCGCAATACTCCATTGATTTGAGA 59.964 41.667 0.30 0.00 45.99 3.27
351 354 5.278169 GCGCAATACTCCATTGATTTGAGAT 60.278 40.000 0.30 0.00 45.99 2.75
352 355 6.073058 GCGCAATACTCCATTGATTTGAGATA 60.073 38.462 0.30 0.00 45.99 1.98
353 356 7.293745 CGCAATACTCCATTGATTTGAGATAC 58.706 38.462 1.26 0.00 45.99 2.24
354 357 7.041848 CGCAATACTCCATTGATTTGAGATACA 60.042 37.037 1.26 0.00 45.99 2.29
355 358 8.072567 GCAATACTCCATTGATTTGAGATACAC 58.927 37.037 1.26 0.00 45.99 2.90
356 359 8.562892 CAATACTCCATTGATTTGAGATACACC 58.437 37.037 0.00 0.00 45.99 4.16
357 360 6.319048 ACTCCATTGATTTGAGATACACCT 57.681 37.500 0.00 0.00 0.00 4.00
358 361 6.352516 ACTCCATTGATTTGAGATACACCTC 58.647 40.000 0.00 0.00 0.00 3.85
359 362 5.684704 TCCATTGATTTGAGATACACCTCC 58.315 41.667 0.00 0.00 32.32 4.30
360 363 5.429762 TCCATTGATTTGAGATACACCTCCT 59.570 40.000 0.00 0.00 32.32 3.69
361 364 6.615316 TCCATTGATTTGAGATACACCTCCTA 59.385 38.462 0.00 0.00 32.32 2.94
362 365 6.933521 CCATTGATTTGAGATACACCTCCTAG 59.066 42.308 0.00 0.00 32.32 3.02
363 366 7.419518 CCATTGATTTGAGATACACCTCCTAGT 60.420 40.741 0.00 0.00 32.32 2.57
364 367 7.496346 TTGATTTGAGATACACCTCCTAGTT 57.504 36.000 0.00 0.00 32.32 2.24
365 368 6.878317 TGATTTGAGATACACCTCCTAGTTG 58.122 40.000 0.00 0.00 32.32 3.16
366 369 6.440647 TGATTTGAGATACACCTCCTAGTTGT 59.559 38.462 0.00 0.00 32.32 3.32
367 370 5.916661 TTGAGATACACCTCCTAGTTGTC 57.083 43.478 0.00 0.00 32.32 3.18
368 371 5.194473 TGAGATACACCTCCTAGTTGTCT 57.806 43.478 0.00 0.00 32.32 3.41
369 372 5.580998 TGAGATACACCTCCTAGTTGTCTT 58.419 41.667 0.00 0.00 32.32 3.01
370 373 6.017192 TGAGATACACCTCCTAGTTGTCTTT 58.983 40.000 0.00 0.00 32.32 2.52
371 374 6.497259 TGAGATACACCTCCTAGTTGTCTTTT 59.503 38.462 0.00 0.00 32.32 2.27
372 375 7.016268 TGAGATACACCTCCTAGTTGTCTTTTT 59.984 37.037 0.00 0.00 32.32 1.94
405 408 0.318699 CCTCGTTGTCTCTGTTCGCA 60.319 55.000 0.00 0.00 0.00 5.10
407 410 0.939577 TCGTTGTCTCTGTTCGCAGC 60.940 55.000 0.00 0.00 44.62 5.25
464 467 1.005215 CTTCTGACCTTGGGCCATCTT 59.995 52.381 7.26 0.00 0.00 2.40
467 470 0.776810 TGACCTTGGGCCATCTTCAA 59.223 50.000 7.26 0.00 0.00 2.69
472 475 3.102204 CCTTGGGCCATCTTCAATTTCT 58.898 45.455 7.26 0.00 0.00 2.52
550 563 4.623932 ATAACTCTGCTTCCAGTGTTCA 57.376 40.909 12.61 3.68 46.93 3.18
562 575 1.580942 GTGTTCACACATGCGGCAT 59.419 52.632 10.23 10.23 45.75 4.40
564 577 1.085893 TGTTCACACATGCGGCATAG 58.914 50.000 16.21 13.49 0.00 2.23
568 581 1.378382 ACACATGCGGCATAGGCAA 60.378 52.632 16.21 0.00 44.66 4.52
614 696 2.264455 AGGACTCCATATGCCTCATCC 58.736 52.381 0.00 0.00 0.00 3.51
656 738 2.113986 AGCAACCACCAGTGCCTC 59.886 61.111 0.00 0.00 0.00 4.70
657 739 2.203337 GCAACCACCAGTGCCTCA 60.203 61.111 0.00 0.00 0.00 3.86
658 740 1.827789 GCAACCACCAGTGCCTCAA 60.828 57.895 0.00 0.00 0.00 3.02
660 742 0.670162 CAACCACCAGTGCCTCAAAG 59.330 55.000 0.00 0.00 0.00 2.77
665 747 1.071385 CACCAGTGCCTCAAAGACTCT 59.929 52.381 0.00 0.00 0.00 3.24
702 784 3.731652 AGCTGATCAGTGCTAGCTAAG 57.268 47.619 23.38 5.42 44.10 2.18
808 893 1.324005 GGAGAGGAACACGAGAGGGG 61.324 65.000 0.00 0.00 40.46 4.79
825 910 1.794714 GGGGGAGATACAGAAGCAGA 58.205 55.000 0.00 0.00 0.00 4.26
826 911 1.691434 GGGGGAGATACAGAAGCAGAG 59.309 57.143 0.00 0.00 0.00 3.35
827 912 1.691434 GGGGAGATACAGAAGCAGAGG 59.309 57.143 0.00 0.00 0.00 3.69
828 913 2.672098 GGGAGATACAGAAGCAGAGGA 58.328 52.381 0.00 0.00 0.00 3.71
829 914 2.627699 GGGAGATACAGAAGCAGAGGAG 59.372 54.545 0.00 0.00 0.00 3.69
830 915 2.627699 GGAGATACAGAAGCAGAGGAGG 59.372 54.545 0.00 0.00 0.00 4.30
831 916 2.035832 GAGATACAGAAGCAGAGGAGGC 59.964 54.545 0.00 0.00 0.00 4.70
832 917 1.069978 GATACAGAAGCAGAGGAGGCC 59.930 57.143 0.00 0.00 0.00 5.19
833 918 1.323271 TACAGAAGCAGAGGAGGCCG 61.323 60.000 0.00 0.00 0.00 6.13
834 919 2.038007 AGAAGCAGAGGAGGCCGA 59.962 61.111 0.00 0.00 0.00 5.54
835 920 1.610673 AGAAGCAGAGGAGGCCGAA 60.611 57.895 0.00 0.00 0.00 4.30
836 921 1.153469 GAAGCAGAGGAGGCCGAAG 60.153 63.158 0.00 0.00 0.00 3.79
837 922 3.322318 AAGCAGAGGAGGCCGAAGC 62.322 63.158 0.00 0.00 38.76 3.86
847 932 3.119096 GCCGAAGCCGTCCAGTTC 61.119 66.667 0.00 0.00 0.00 3.01
848 933 2.434359 CCGAAGCCGTCCAGTTCC 60.434 66.667 0.00 0.00 0.00 3.62
849 934 2.657237 CGAAGCCGTCCAGTTCCT 59.343 61.111 0.00 0.00 0.00 3.36
850 935 1.601419 CCGAAGCCGTCCAGTTCCTA 61.601 60.000 0.00 0.00 0.00 2.94
851 936 0.179134 CGAAGCCGTCCAGTTCCTAG 60.179 60.000 0.00 0.00 0.00 3.02
852 937 0.460459 GAAGCCGTCCAGTTCCTAGC 60.460 60.000 0.00 0.00 0.00 3.42
853 938 1.900545 AAGCCGTCCAGTTCCTAGCC 61.901 60.000 0.00 0.00 0.00 3.93
854 939 2.656069 GCCGTCCAGTTCCTAGCCA 61.656 63.158 0.00 0.00 0.00 4.75
855 940 1.980052 CCGTCCAGTTCCTAGCCAA 59.020 57.895 0.00 0.00 0.00 4.52
856 941 0.108138 CCGTCCAGTTCCTAGCCAAG 60.108 60.000 0.00 0.00 0.00 3.61
857 942 0.608640 CGTCCAGTTCCTAGCCAAGT 59.391 55.000 0.00 0.00 0.00 3.16
858 943 1.002087 CGTCCAGTTCCTAGCCAAGTT 59.998 52.381 0.00 0.00 0.00 2.66
859 944 2.427506 GTCCAGTTCCTAGCCAAGTTG 58.572 52.381 0.00 0.00 0.00 3.16
860 945 2.054799 TCCAGTTCCTAGCCAAGTTGT 58.945 47.619 1.45 0.00 0.00 3.32
861 946 2.441750 TCCAGTTCCTAGCCAAGTTGTT 59.558 45.455 1.45 0.00 0.00 2.83
862 947 2.814336 CCAGTTCCTAGCCAAGTTGTTC 59.186 50.000 1.45 0.00 0.00 3.18
863 948 2.480419 CAGTTCCTAGCCAAGTTGTTCG 59.520 50.000 1.45 0.00 0.00 3.95
864 949 2.104281 AGTTCCTAGCCAAGTTGTTCGT 59.896 45.455 1.45 0.00 0.00 3.85
865 950 3.322828 AGTTCCTAGCCAAGTTGTTCGTA 59.677 43.478 1.45 0.00 0.00 3.43
866 951 4.060205 GTTCCTAGCCAAGTTGTTCGTAA 58.940 43.478 1.45 0.00 0.00 3.18
867 952 3.656559 TCCTAGCCAAGTTGTTCGTAAC 58.343 45.455 1.45 0.00 0.00 2.50
868 953 3.322828 TCCTAGCCAAGTTGTTCGTAACT 59.677 43.478 1.45 0.00 42.43 2.24
869 954 3.678548 CCTAGCCAAGTTGTTCGTAACTC 59.321 47.826 1.45 0.00 39.86 3.01
870 955 3.470645 AGCCAAGTTGTTCGTAACTCT 57.529 42.857 1.45 0.00 39.86 3.24
871 956 4.595762 AGCCAAGTTGTTCGTAACTCTA 57.404 40.909 1.45 0.00 39.86 2.43
872 957 5.148651 AGCCAAGTTGTTCGTAACTCTAT 57.851 39.130 1.45 0.00 39.86 1.98
873 958 5.169295 AGCCAAGTTGTTCGTAACTCTATC 58.831 41.667 1.45 0.00 39.86 2.08
874 959 4.329256 GCCAAGTTGTTCGTAACTCTATCC 59.671 45.833 1.45 0.00 39.86 2.59
875 960 4.868734 CCAAGTTGTTCGTAACTCTATCCC 59.131 45.833 1.45 0.00 39.86 3.85
876 961 5.337330 CCAAGTTGTTCGTAACTCTATCCCT 60.337 44.000 1.45 0.00 39.86 4.20
877 962 5.997384 AGTTGTTCGTAACTCTATCCCTT 57.003 39.130 0.00 0.00 36.16 3.95
878 963 5.721232 AGTTGTTCGTAACTCTATCCCTTG 58.279 41.667 0.00 0.00 36.16 3.61
879 964 5.245526 AGTTGTTCGTAACTCTATCCCTTGT 59.754 40.000 0.00 0.00 36.16 3.16
880 965 6.435277 AGTTGTTCGTAACTCTATCCCTTGTA 59.565 38.462 0.00 0.00 36.16 2.41
881 966 7.123847 AGTTGTTCGTAACTCTATCCCTTGTAT 59.876 37.037 0.00 0.00 36.16 2.29
882 967 7.414222 TGTTCGTAACTCTATCCCTTGTATT 57.586 36.000 0.00 0.00 0.00 1.89
883 968 7.844009 TGTTCGTAACTCTATCCCTTGTATTT 58.156 34.615 0.00 0.00 0.00 1.40
884 969 7.762615 TGTTCGTAACTCTATCCCTTGTATTTG 59.237 37.037 0.00 0.00 0.00 2.32
885 970 7.414222 TCGTAACTCTATCCCTTGTATTTGT 57.586 36.000 0.00 0.00 0.00 2.83
886 971 8.523915 TCGTAACTCTATCCCTTGTATTTGTA 57.476 34.615 0.00 0.00 0.00 2.41
887 972 8.627403 TCGTAACTCTATCCCTTGTATTTGTAG 58.373 37.037 0.00 0.00 0.00 2.74
888 973 8.411683 CGTAACTCTATCCCTTGTATTTGTAGT 58.588 37.037 0.00 0.00 0.00 2.73
891 976 7.048512 ACTCTATCCCTTGTATTTGTAGTTGC 58.951 38.462 0.00 0.00 0.00 4.17
892 977 6.354130 TCTATCCCTTGTATTTGTAGTTGCC 58.646 40.000 0.00 0.00 0.00 4.52
893 978 3.340034 TCCCTTGTATTTGTAGTTGCCG 58.660 45.455 0.00 0.00 0.00 5.69
894 979 3.078837 CCCTTGTATTTGTAGTTGCCGT 58.921 45.455 0.00 0.00 0.00 5.68
895 980 3.119990 CCCTTGTATTTGTAGTTGCCGTG 60.120 47.826 0.00 0.00 0.00 4.94
896 981 3.500680 CCTTGTATTTGTAGTTGCCGTGT 59.499 43.478 0.00 0.00 0.00 4.49
897 982 4.023536 CCTTGTATTTGTAGTTGCCGTGTT 60.024 41.667 0.00 0.00 0.00 3.32
898 983 4.475763 TGTATTTGTAGTTGCCGTGTTG 57.524 40.909 0.00 0.00 0.00 3.33
899 984 2.415697 ATTTGTAGTTGCCGTGTTGC 57.584 45.000 0.00 0.00 0.00 4.17
900 985 0.382515 TTTGTAGTTGCCGTGTTGCC 59.617 50.000 0.00 0.00 0.00 4.52
901 986 0.464735 TTGTAGTTGCCGTGTTGCCT 60.465 50.000 0.00 0.00 0.00 4.75
902 987 1.163420 TGTAGTTGCCGTGTTGCCTG 61.163 55.000 0.00 0.00 0.00 4.85
903 988 1.599518 TAGTTGCCGTGTTGCCTGG 60.600 57.895 0.00 0.00 0.00 4.45
907 992 3.431725 GCCGTGTTGCCTGGCTAC 61.432 66.667 23.52 23.52 45.40 3.58
908 993 2.746277 CCGTGTTGCCTGGCTACC 60.746 66.667 26.31 17.61 33.72 3.18
909 994 3.118454 CGTGTTGCCTGGCTACCG 61.118 66.667 26.31 23.54 33.72 4.02
910 995 2.345991 GTGTTGCCTGGCTACCGA 59.654 61.111 26.31 9.63 33.72 4.69
911 996 1.741770 GTGTTGCCTGGCTACCGAG 60.742 63.158 26.31 0.00 33.72 4.63
921 1006 2.512515 CTACCGAGCAGCCCAAGC 60.513 66.667 0.00 0.00 40.32 4.01
922 1007 4.096003 TACCGAGCAGCCCAAGCC 62.096 66.667 0.00 0.00 41.25 4.35
926 1011 4.357279 GAGCAGCCCAAGCCCAGT 62.357 66.667 0.00 0.00 41.25 4.00
927 1012 2.935481 AGCAGCCCAAGCCCAGTA 60.935 61.111 0.00 0.00 41.25 2.74
928 1013 2.439156 GCAGCCCAAGCCCAGTAG 60.439 66.667 0.00 0.00 41.25 2.57
929 1014 3.081554 CAGCCCAAGCCCAGTAGT 58.918 61.111 0.00 0.00 41.25 2.73
930 1015 1.380302 CAGCCCAAGCCCAGTAGTT 59.620 57.895 0.00 0.00 41.25 2.24
931 1016 0.618458 CAGCCCAAGCCCAGTAGTTA 59.382 55.000 0.00 0.00 41.25 2.24
932 1017 1.212935 CAGCCCAAGCCCAGTAGTTAT 59.787 52.381 0.00 0.00 41.25 1.89
933 1018 1.212935 AGCCCAAGCCCAGTAGTTATG 59.787 52.381 0.00 0.00 41.25 1.90
934 1019 1.750682 GCCCAAGCCCAGTAGTTATGG 60.751 57.143 0.00 0.00 37.58 2.74
935 1020 1.680338 CCAAGCCCAGTAGTTATGGC 58.320 55.000 0.00 0.00 44.35 4.40
936 1021 1.680338 CAAGCCCAGTAGTTATGGCC 58.320 55.000 0.00 0.00 45.14 5.36
937 1022 0.551396 AAGCCCAGTAGTTATGGCCC 59.449 55.000 0.00 0.00 45.14 5.80
938 1023 0.623324 AGCCCAGTAGTTATGGCCCA 60.623 55.000 0.00 0.00 45.14 5.36
939 1024 0.478507 GCCCAGTAGTTATGGCCCAT 59.521 55.000 0.00 0.00 37.94 4.00
940 1025 1.133482 GCCCAGTAGTTATGGCCCATT 60.133 52.381 0.00 0.00 37.94 3.16
941 1026 2.586425 CCCAGTAGTTATGGCCCATTG 58.414 52.381 0.00 0.00 36.43 2.82
942 1027 2.091885 CCCAGTAGTTATGGCCCATTGT 60.092 50.000 0.00 0.00 36.43 2.71
943 1028 3.214328 CCAGTAGTTATGGCCCATTGTC 58.786 50.000 0.00 0.00 0.00 3.18
944 1029 2.872245 CAGTAGTTATGGCCCATTGTCG 59.128 50.000 0.00 0.00 0.00 4.35
945 1030 2.769663 AGTAGTTATGGCCCATTGTCGA 59.230 45.455 0.00 0.00 0.00 4.20
946 1031 3.391296 AGTAGTTATGGCCCATTGTCGAT 59.609 43.478 0.00 0.00 0.00 3.59
947 1032 2.851195 AGTTATGGCCCATTGTCGATC 58.149 47.619 0.00 0.00 0.00 3.69
948 1033 1.880027 GTTATGGCCCATTGTCGATCC 59.120 52.381 0.00 0.00 0.00 3.36
949 1034 0.400213 TATGGCCCATTGTCGATCCC 59.600 55.000 0.00 0.00 0.00 3.85
950 1035 1.644437 ATGGCCCATTGTCGATCCCA 61.644 55.000 0.00 0.00 0.00 4.37
951 1036 1.151450 GGCCCATTGTCGATCCCAT 59.849 57.895 0.00 0.00 0.00 4.00
952 1037 1.174712 GGCCCATTGTCGATCCCATG 61.175 60.000 0.00 0.00 0.00 3.66
953 1038 1.174712 GCCCATTGTCGATCCCATGG 61.175 60.000 4.14 4.14 0.00 3.66
954 1039 0.538057 CCCATTGTCGATCCCATGGG 60.538 60.000 26.30 26.30 42.18 4.00
963 1048 2.367377 TCCCATGGGAGAGCAGGG 60.367 66.667 30.62 0.07 39.76 4.45
964 1049 3.496160 CCCATGGGAGAGCAGGGG 61.496 72.222 28.27 0.00 36.00 4.79
965 1050 2.367377 CCATGGGAGAGCAGGGGA 60.367 66.667 2.85 0.00 0.00 4.81
966 1051 2.002977 CCATGGGAGAGCAGGGGAA 61.003 63.158 2.85 0.00 0.00 3.97
967 1052 1.530771 CATGGGAGAGCAGGGGAAG 59.469 63.158 0.00 0.00 0.00 3.46
968 1053 1.083706 ATGGGAGAGCAGGGGAAGT 59.916 57.895 0.00 0.00 0.00 3.01
969 1054 0.985490 ATGGGAGAGCAGGGGAAGTC 60.985 60.000 0.00 0.00 0.00 3.01
970 1055 2.726351 GGGAGAGCAGGGGAAGTCG 61.726 68.421 0.00 0.00 0.00 4.18
971 1056 2.185608 GAGAGCAGGGGAAGTCGC 59.814 66.667 0.00 0.00 0.00 5.19
972 1057 2.284258 AGAGCAGGGGAAGTCGCT 60.284 61.111 0.00 0.00 39.41 4.93
973 1058 1.000486 AGAGCAGGGGAAGTCGCTA 60.000 57.895 0.00 0.00 36.85 4.26
974 1059 0.614979 AGAGCAGGGGAAGTCGCTAA 60.615 55.000 0.00 0.00 36.85 3.09
975 1060 0.460459 GAGCAGGGGAAGTCGCTAAC 60.460 60.000 0.00 0.00 36.85 2.34
976 1061 1.192146 AGCAGGGGAAGTCGCTAACA 61.192 55.000 0.00 0.00 36.85 2.41
1065 5515 3.458163 CTTGCTCCGGCCGTCCTA 61.458 66.667 26.12 4.70 37.74 2.94
1105 5555 1.597854 CAGGACTTCTGCGTTGCCA 60.598 57.895 0.00 0.00 36.60 4.92
1111 5561 1.153066 TTCTGCGTTGCCAACCTCA 60.153 52.632 1.21 0.00 0.00 3.86
1113 5563 1.008538 CTGCGTTGCCAACCTCAAC 60.009 57.895 1.21 0.00 40.13 3.18
1296 5746 2.332654 GGGTGTGTCCATGAACCGC 61.333 63.158 0.00 0.00 38.11 5.68
1682 9084 1.005450 TGGTGGGTCTTAATCCTTGGC 59.995 52.381 0.00 0.00 0.00 4.52
1693 9095 1.298953 ATCCTTGGCAGCTTTCCCTA 58.701 50.000 0.00 0.00 0.00 3.53
1703 9105 3.129462 GCAGCTTTCCCTAAAATGGTCTC 59.871 47.826 0.00 0.00 0.00 3.36
1899 13045 9.697250 ATTGTCGTATTTGTATTGTCGTATTTG 57.303 29.630 0.00 0.00 0.00 2.32
1900 13046 8.242085 TGTCGTATTTGTATTGTCGTATTTGT 57.758 30.769 0.00 0.00 0.00 2.83
2059 13251 5.872617 TCTCAAGTTACGGGAATACATTGTG 59.127 40.000 0.00 0.00 0.00 3.33
2110 13302 6.591062 GCATTGTAGCAATCTCCAAAATGAAA 59.409 34.615 0.00 0.00 0.00 2.69
2234 13476 7.470289 TTTGTTTCATAATGTTTCGTTTGGG 57.530 32.000 0.00 0.00 0.00 4.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.142859 CGCAAAAAGTATTAGTTACCCGCA 60.143 41.667 0.00 0.00 0.00 5.69
1 2 4.093261 TCGCAAAAAGTATTAGTTACCCGC 59.907 41.667 0.00 0.00 0.00 6.13
2 3 5.783100 TCGCAAAAAGTATTAGTTACCCG 57.217 39.130 0.00 0.00 0.00 5.28
4 5 6.517374 CGTGTTCGCAAAAAGTATTAGTTACC 59.483 38.462 0.00 0.00 0.00 2.85
5 6 7.456358 CGTGTTCGCAAAAAGTATTAGTTAC 57.544 36.000 0.00 0.00 0.00 2.50
29 30 0.944386 TCGAGACACAAGCCTTTTGC 59.056 50.000 0.00 0.00 41.71 3.68
30 31 2.549754 ACATCGAGACACAAGCCTTTTG 59.450 45.455 0.00 0.00 0.00 2.44
31 32 2.851195 ACATCGAGACACAAGCCTTTT 58.149 42.857 0.00 0.00 0.00 2.27
32 33 2.550830 ACATCGAGACACAAGCCTTT 57.449 45.000 0.00 0.00 0.00 3.11
33 34 3.895232 ATACATCGAGACACAAGCCTT 57.105 42.857 0.00 0.00 0.00 4.35
34 35 3.895232 AATACATCGAGACACAAGCCT 57.105 42.857 0.00 0.00 0.00 4.58
35 36 4.933330 TCTAATACATCGAGACACAAGCC 58.067 43.478 0.00 0.00 0.00 4.35
36 37 6.266323 TCTTCTAATACATCGAGACACAAGC 58.734 40.000 0.00 0.00 0.00 4.01
37 38 7.698628 TCTCTTCTAATACATCGAGACACAAG 58.301 38.462 0.00 0.00 0.00 3.16
38 39 7.553044 TCTCTCTTCTAATACATCGAGACACAA 59.447 37.037 0.00 0.00 0.00 3.33
39 40 7.048512 TCTCTCTTCTAATACATCGAGACACA 58.951 38.462 0.00 0.00 0.00 3.72
40 41 7.485418 TCTCTCTTCTAATACATCGAGACAC 57.515 40.000 0.00 0.00 0.00 3.67
41 42 6.203915 GCTCTCTCTTCTAATACATCGAGACA 59.796 42.308 0.00 0.00 0.00 3.41
42 43 6.203915 TGCTCTCTCTTCTAATACATCGAGAC 59.796 42.308 0.00 0.00 0.00 3.36
43 44 6.292150 TGCTCTCTCTTCTAATACATCGAGA 58.708 40.000 0.00 0.00 0.00 4.04
44 45 6.552859 TGCTCTCTCTTCTAATACATCGAG 57.447 41.667 0.00 0.00 0.00 4.04
45 46 6.944234 TTGCTCTCTCTTCTAATACATCGA 57.056 37.500 0.00 0.00 0.00 3.59
46 47 6.975197 TGTTTGCTCTCTCTTCTAATACATCG 59.025 38.462 0.00 0.00 0.00 3.84
47 48 8.709386 TTGTTTGCTCTCTCTTCTAATACATC 57.291 34.615 0.00 0.00 0.00 3.06
49 50 9.587772 GTATTGTTTGCTCTCTCTTCTAATACA 57.412 33.333 0.00 0.00 31.26 2.29
50 51 9.587772 TGTATTGTTTGCTCTCTCTTCTAATAC 57.412 33.333 0.00 0.00 0.00 1.89
52 53 9.160496 CTTGTATTGTTTGCTCTCTCTTCTAAT 57.840 33.333 0.00 0.00 0.00 1.73
53 54 8.150945 ACTTGTATTGTTTGCTCTCTCTTCTAA 58.849 33.333 0.00 0.00 0.00 2.10
54 55 7.671302 ACTTGTATTGTTTGCTCTCTCTTCTA 58.329 34.615 0.00 0.00 0.00 2.10
55 56 6.529220 ACTTGTATTGTTTGCTCTCTCTTCT 58.471 36.000 0.00 0.00 0.00 2.85
56 57 6.793492 ACTTGTATTGTTTGCTCTCTCTTC 57.207 37.500 0.00 0.00 0.00 2.87
57 58 6.073548 CGAACTTGTATTGTTTGCTCTCTCTT 60.074 38.462 0.00 0.00 0.00 2.85
58 59 5.406780 CGAACTTGTATTGTTTGCTCTCTCT 59.593 40.000 0.00 0.00 0.00 3.10
59 60 5.177696 ACGAACTTGTATTGTTTGCTCTCTC 59.822 40.000 0.00 0.00 33.37 3.20
60 61 5.057149 ACGAACTTGTATTGTTTGCTCTCT 58.943 37.500 0.00 0.00 33.37 3.10
61 62 5.344207 ACGAACTTGTATTGTTTGCTCTC 57.656 39.130 0.00 0.00 33.37 3.20
62 63 5.751243 AACGAACTTGTATTGTTTGCTCT 57.249 34.783 0.00 0.00 33.37 4.09
63 64 6.908284 TGTAAACGAACTTGTATTGTTTGCTC 59.092 34.615 0.00 0.00 36.51 4.26
64 65 6.787225 TGTAAACGAACTTGTATTGTTTGCT 58.213 32.000 0.00 0.00 36.51 3.91
65 66 6.344702 GCTGTAAACGAACTTGTATTGTTTGC 60.345 38.462 0.00 2.37 36.23 3.68
66 67 6.910433 AGCTGTAAACGAACTTGTATTGTTTG 59.090 34.615 0.00 0.00 34.80 2.93
67 68 7.023197 AGCTGTAAACGAACTTGTATTGTTT 57.977 32.000 0.00 0.00 36.74 2.83
68 69 6.613755 AGCTGTAAACGAACTTGTATTGTT 57.386 33.333 0.00 0.00 0.00 2.83
69 70 6.037830 ACAAGCTGTAAACGAACTTGTATTGT 59.962 34.615 4.97 0.00 46.66 2.71
70 71 6.427150 ACAAGCTGTAAACGAACTTGTATTG 58.573 36.000 4.97 0.00 46.66 1.90
71 72 6.613755 ACAAGCTGTAAACGAACTTGTATT 57.386 33.333 4.97 0.00 46.66 1.89
75 76 3.482110 GCAACAAGCTGTAAACGAACTTG 59.518 43.478 0.00 0.00 42.63 3.16
76 77 3.691498 GCAACAAGCTGTAAACGAACTT 58.309 40.909 0.00 0.00 41.15 2.66
77 78 2.286184 CGCAACAAGCTGTAAACGAACT 60.286 45.455 0.00 0.00 42.61 3.01
78 79 2.034076 CGCAACAAGCTGTAAACGAAC 58.966 47.619 0.00 0.00 42.61 3.95
79 80 1.003331 CCGCAACAAGCTGTAAACGAA 60.003 47.619 0.00 0.00 42.61 3.85
80 81 0.584396 CCGCAACAAGCTGTAAACGA 59.416 50.000 0.00 0.00 42.61 3.85
81 82 0.996727 GCCGCAACAAGCTGTAAACG 60.997 55.000 0.00 0.00 42.61 3.60
82 83 0.030101 TGCCGCAACAAGCTGTAAAC 59.970 50.000 0.00 0.00 42.61 2.01
83 84 0.030101 GTGCCGCAACAAGCTGTAAA 59.970 50.000 0.00 0.00 42.61 2.01
84 85 1.652012 GTGCCGCAACAAGCTGTAA 59.348 52.632 0.00 0.00 42.61 2.41
85 86 2.258013 GGTGCCGCAACAAGCTGTA 61.258 57.895 2.72 0.00 42.61 2.74
86 87 3.595758 GGTGCCGCAACAAGCTGT 61.596 61.111 2.72 0.00 42.61 4.40
87 88 3.594775 TGGTGCCGCAACAAGCTG 61.595 61.111 9.15 0.00 42.61 4.24
88 89 3.595758 GTGGTGCCGCAACAAGCT 61.596 61.111 13.95 0.00 42.61 3.74
89 90 4.980903 CGTGGTGCCGCAACAAGC 62.981 66.667 13.95 0.17 30.77 4.01
90 91 2.128853 ATTCGTGGTGCCGCAACAAG 62.129 55.000 13.95 15.78 30.77 3.16
91 92 2.190170 ATTCGTGGTGCCGCAACAA 61.190 52.632 13.95 0.00 30.77 2.83
92 93 2.593148 ATTCGTGGTGCCGCAACA 60.593 55.556 7.11 7.11 0.00 3.33
93 94 2.126888 CATTCGTGGTGCCGCAAC 60.127 61.111 0.00 0.00 0.00 4.17
94 95 3.361158 CCATTCGTGGTGCCGCAA 61.361 61.111 0.00 0.00 0.00 4.85
101 102 4.329545 ACCAGCGCCATTCGTGGT 62.330 61.111 10.69 10.69 43.01 4.16
102 103 3.803082 CACCAGCGCCATTCGTGG 61.803 66.667 2.29 6.68 41.69 4.94
103 104 3.803082 CCACCAGCGCCATTCGTG 61.803 66.667 2.29 3.22 41.07 4.35
104 105 2.852495 CTACCACCAGCGCCATTCGT 62.852 60.000 2.29 0.00 41.07 3.85
105 106 2.125310 TACCACCAGCGCCATTCG 60.125 61.111 2.29 0.00 42.12 3.34
106 107 2.472909 GCTACCACCAGCGCCATTC 61.473 63.158 2.29 0.00 0.00 2.67
107 108 2.438434 GCTACCACCAGCGCCATT 60.438 61.111 2.29 0.00 0.00 3.16
108 109 4.489771 GGCTACCACCAGCGCCAT 62.490 66.667 2.29 0.00 42.76 4.40
110 111 3.026431 TAAGGCTACCACCAGCGCC 62.026 63.158 2.29 0.00 42.76 6.53
111 112 1.814169 GTAAGGCTACCACCAGCGC 60.814 63.158 0.00 0.00 42.76 5.92
112 113 1.518572 CGTAAGGCTACCACCAGCG 60.519 63.158 0.00 0.00 42.76 5.18
113 114 4.515404 CGTAAGGCTACCACCAGC 57.485 61.111 0.00 0.00 41.02 4.85
132 133 4.770874 TAGTTTGCGGCGGCCCTC 62.771 66.667 14.55 6.20 38.85 4.30
133 134 2.260088 TATTAGTTTGCGGCGGCCCT 62.260 55.000 14.55 6.71 38.85 5.19
134 135 1.170290 ATATTAGTTTGCGGCGGCCC 61.170 55.000 14.55 7.00 38.85 5.80
135 136 0.040425 CATATTAGTTTGCGGCGGCC 60.040 55.000 14.25 9.54 38.85 6.13
136 137 0.941542 TCATATTAGTTTGCGGCGGC 59.058 50.000 9.78 9.68 40.52 6.53
137 138 5.545658 AATATCATATTAGTTTGCGGCGG 57.454 39.130 9.78 0.00 0.00 6.13
138 139 7.378461 ACAAAAATATCATATTAGTTTGCGGCG 59.622 33.333 0.51 0.51 0.00 6.46
139 140 8.574196 ACAAAAATATCATATTAGTTTGCGGC 57.426 30.769 11.93 0.00 0.00 6.53
140 141 9.950680 AGACAAAAATATCATATTAGTTTGCGG 57.049 29.630 11.93 0.00 0.00 5.69
168 169 9.924650 CCACCACTATTAGTTCATATAAGTACC 57.075 37.037 0.00 0.00 0.00 3.34
175 176 6.615726 ACCAGTCCACCACTATTAGTTCATAT 59.384 38.462 0.00 0.00 32.21 1.78
228 231 4.348486 TCAGGCAAAAATGGCAAGGTATA 58.652 39.130 5.16 0.00 36.76 1.47
229 232 3.172339 TCAGGCAAAAATGGCAAGGTAT 58.828 40.909 5.16 0.00 36.76 2.73
260 263 5.299531 ACGATGATCTTGATTTCGTCTAGGA 59.700 40.000 13.13 0.00 38.56 2.94
279 282 1.726791 GCACACCTGTACTCAACGATG 59.273 52.381 0.00 0.00 0.00 3.84
284 287 0.747852 TCGTGCACACCTGTACTCAA 59.252 50.000 18.64 0.00 31.13 3.02
291 294 1.069703 CACAAGATTCGTGCACACCTG 60.070 52.381 18.64 7.18 0.00 4.00
374 377 4.773013 AGACAACGAGGAGGTAACAAAAA 58.227 39.130 0.00 0.00 41.41 1.94
375 378 4.100498 AGAGACAACGAGGAGGTAACAAAA 59.900 41.667 0.00 0.00 41.41 2.44
376 379 3.640029 AGAGACAACGAGGAGGTAACAAA 59.360 43.478 0.00 0.00 41.41 2.83
377 380 3.005472 CAGAGACAACGAGGAGGTAACAA 59.995 47.826 0.00 0.00 41.41 2.83
378 381 2.557056 CAGAGACAACGAGGAGGTAACA 59.443 50.000 0.00 0.00 41.41 2.41
379 382 2.557490 ACAGAGACAACGAGGAGGTAAC 59.443 50.000 0.00 0.00 0.00 2.50
380 383 2.872732 ACAGAGACAACGAGGAGGTAA 58.127 47.619 0.00 0.00 0.00 2.85
381 384 2.581216 ACAGAGACAACGAGGAGGTA 57.419 50.000 0.00 0.00 0.00 3.08
405 408 2.621668 GCTAAGGAAAATGGGACCTGCT 60.622 50.000 0.00 0.00 34.03 4.24
407 410 3.019564 CTGCTAAGGAAAATGGGACCTG 58.980 50.000 0.00 0.00 34.03 4.00
464 467 6.537355 AGATCTCACCTTGTGAAGAAATTGA 58.463 36.000 0.00 0.00 42.26 2.57
467 470 5.047021 TCGAGATCTCACCTTGTGAAGAAAT 60.047 40.000 22.31 0.00 42.26 2.17
472 475 2.095212 CGTCGAGATCTCACCTTGTGAA 60.095 50.000 22.31 0.00 42.26 3.18
518 522 4.292186 AGCAGAGTTATTTTGCTGAGGA 57.708 40.909 0.00 0.00 45.75 3.71
550 563 1.378382 TTGCCTATGCCGCATGTGT 60.378 52.632 16.40 0.00 35.83 3.72
582 634 7.275920 GCATATGGAGTCCTTTATATAGGTGG 58.724 42.308 11.33 0.00 36.63 4.61
614 696 1.556911 AGCTGTGGTGGATGAGTTAGG 59.443 52.381 0.00 0.00 0.00 2.69
656 738 7.701445 AGAGTTTGTTGATCAAAGAGTCTTTG 58.299 34.615 31.44 31.44 45.15 2.77
657 739 7.872113 AGAGTTTGTTGATCAAAGAGTCTTT 57.128 32.000 12.50 12.50 45.15 2.52
658 740 7.172361 GCTAGAGTTTGTTGATCAAAGAGTCTT 59.828 37.037 20.46 0.00 45.15 3.01
660 742 6.648725 AGCTAGAGTTTGTTGATCAAAGAGTC 59.351 38.462 10.35 10.90 45.15 3.36
665 747 7.369803 GATCAGCTAGAGTTTGTTGATCAAA 57.630 36.000 10.35 0.00 44.60 2.69
702 784 4.119862 TGTGAGAAGAGTGCTGTTAACAC 58.880 43.478 3.59 2.86 38.35 3.32
808 893 2.627699 CTCCTCTGCTTCTGTATCTCCC 59.372 54.545 0.00 0.00 0.00 4.30
830 915 3.119096 GAACTGGACGGCTTCGGC 61.119 66.667 0.00 0.00 42.17 5.54
831 916 1.601419 TAGGAACTGGACGGCTTCGG 61.601 60.000 0.00 0.00 41.52 4.30
832 917 0.179134 CTAGGAACTGGACGGCTTCG 60.179 60.000 0.00 0.00 40.33 3.79
833 918 0.460459 GCTAGGAACTGGACGGCTTC 60.460 60.000 0.00 0.00 40.33 3.86
834 919 1.597461 GCTAGGAACTGGACGGCTT 59.403 57.895 0.00 0.00 40.33 4.35
835 920 2.359967 GGCTAGGAACTGGACGGCT 61.360 63.158 0.00 0.00 40.33 5.52
836 921 2.187163 GGCTAGGAACTGGACGGC 59.813 66.667 0.00 0.00 40.33 5.68
840 925 2.054799 ACAACTTGGCTAGGAACTGGA 58.945 47.619 0.20 0.00 40.33 3.86
841 926 2.568623 ACAACTTGGCTAGGAACTGG 57.431 50.000 0.20 0.00 41.52 4.00
842 927 2.480419 CGAACAACTTGGCTAGGAACTG 59.520 50.000 0.20 0.00 41.52 3.16
843 928 2.104281 ACGAACAACTTGGCTAGGAACT 59.896 45.455 0.20 0.00 46.37 3.01
844 929 2.490991 ACGAACAACTTGGCTAGGAAC 58.509 47.619 0.20 0.00 0.00 3.62
845 930 2.922740 ACGAACAACTTGGCTAGGAA 57.077 45.000 0.20 0.00 0.00 3.36
846 931 3.322828 AGTTACGAACAACTTGGCTAGGA 59.677 43.478 0.20 0.00 35.16 2.94
847 932 3.660865 AGTTACGAACAACTTGGCTAGG 58.339 45.455 0.20 0.00 35.16 3.02
848 933 4.557205 AGAGTTACGAACAACTTGGCTAG 58.443 43.478 0.00 0.00 38.86 3.42
849 934 4.595762 AGAGTTACGAACAACTTGGCTA 57.404 40.909 0.00 0.00 38.86 3.93
850 935 3.470645 AGAGTTACGAACAACTTGGCT 57.529 42.857 0.00 0.00 38.86 4.75
851 936 4.329256 GGATAGAGTTACGAACAACTTGGC 59.671 45.833 0.00 0.00 38.86 4.52
852 937 4.868734 GGGATAGAGTTACGAACAACTTGG 59.131 45.833 0.00 0.00 38.86 3.61
853 938 5.721232 AGGGATAGAGTTACGAACAACTTG 58.279 41.667 0.00 0.00 38.86 3.16
854 939 5.997384 AGGGATAGAGTTACGAACAACTT 57.003 39.130 0.00 0.00 38.86 2.66
855 940 5.245526 ACAAGGGATAGAGTTACGAACAACT 59.754 40.000 0.00 0.00 41.44 3.16
856 941 5.476614 ACAAGGGATAGAGTTACGAACAAC 58.523 41.667 0.00 0.00 0.00 3.32
857 942 5.733620 ACAAGGGATAGAGTTACGAACAA 57.266 39.130 0.00 0.00 0.00 2.83
858 943 7.414222 AATACAAGGGATAGAGTTACGAACA 57.586 36.000 0.00 0.00 0.00 3.18
859 944 7.763071 ACAAATACAAGGGATAGAGTTACGAAC 59.237 37.037 0.00 0.00 0.00 3.95
860 945 7.844009 ACAAATACAAGGGATAGAGTTACGAA 58.156 34.615 0.00 0.00 0.00 3.85
861 946 7.414222 ACAAATACAAGGGATAGAGTTACGA 57.586 36.000 0.00 0.00 0.00 3.43
862 947 8.411683 ACTACAAATACAAGGGATAGAGTTACG 58.588 37.037 0.00 0.00 0.00 3.18
865 950 7.553044 GCAACTACAAATACAAGGGATAGAGTT 59.447 37.037 0.00 0.00 0.00 3.01
866 951 7.048512 GCAACTACAAATACAAGGGATAGAGT 58.951 38.462 0.00 0.00 0.00 3.24
867 952 6.483640 GGCAACTACAAATACAAGGGATAGAG 59.516 42.308 0.00 0.00 0.00 2.43
868 953 6.354130 GGCAACTACAAATACAAGGGATAGA 58.646 40.000 0.00 0.00 0.00 1.98
869 954 5.236478 CGGCAACTACAAATACAAGGGATAG 59.764 44.000 0.00 0.00 0.00 2.08
870 955 5.120399 CGGCAACTACAAATACAAGGGATA 58.880 41.667 0.00 0.00 0.00 2.59
871 956 3.945285 CGGCAACTACAAATACAAGGGAT 59.055 43.478 0.00 0.00 0.00 3.85
872 957 3.244630 ACGGCAACTACAAATACAAGGGA 60.245 43.478 0.00 0.00 0.00 4.20
873 958 3.078837 ACGGCAACTACAAATACAAGGG 58.921 45.455 0.00 0.00 0.00 3.95
874 959 3.500680 ACACGGCAACTACAAATACAAGG 59.499 43.478 0.00 0.00 0.00 3.61
875 960 4.742438 ACACGGCAACTACAAATACAAG 57.258 40.909 0.00 0.00 0.00 3.16
876 961 4.790123 GCAACACGGCAACTACAAATACAA 60.790 41.667 0.00 0.00 0.00 2.41
877 962 3.304123 GCAACACGGCAACTACAAATACA 60.304 43.478 0.00 0.00 0.00 2.29
878 963 3.231160 GCAACACGGCAACTACAAATAC 58.769 45.455 0.00 0.00 0.00 1.89
879 964 2.226912 GGCAACACGGCAACTACAAATA 59.773 45.455 0.00 0.00 40.76 1.40
880 965 1.000717 GGCAACACGGCAACTACAAAT 60.001 47.619 0.00 0.00 40.76 2.32
881 966 0.382515 GGCAACACGGCAACTACAAA 59.617 50.000 0.00 0.00 40.76 2.83
882 967 0.464735 AGGCAACACGGCAACTACAA 60.465 50.000 0.00 0.00 44.47 2.41
883 968 1.147376 AGGCAACACGGCAACTACA 59.853 52.632 0.00 0.00 44.47 2.74
884 969 1.574428 CAGGCAACACGGCAACTAC 59.426 57.895 0.00 0.00 44.47 2.73
885 970 1.599518 CCAGGCAACACGGCAACTA 60.600 57.895 0.00 0.00 44.47 2.24
886 971 2.906897 CCAGGCAACACGGCAACT 60.907 61.111 0.00 0.00 44.47 3.16
891 976 2.746277 GGTAGCCAGGCAACACGG 60.746 66.667 15.80 0.00 41.41 4.94
892 977 3.118454 CGGTAGCCAGGCAACACG 61.118 66.667 15.80 8.83 41.41 4.49
893 978 1.741770 CTCGGTAGCCAGGCAACAC 60.742 63.158 15.80 8.27 41.41 3.32
894 979 2.662596 CTCGGTAGCCAGGCAACA 59.337 61.111 15.80 0.00 41.41 3.33
895 980 2.820037 GCTCGGTAGCCAGGCAAC 60.820 66.667 15.80 1.07 43.40 4.17
904 989 2.512515 GCTTGGGCTGCTCGGTAG 60.513 66.667 0.00 0.00 35.22 3.18
905 990 4.096003 GGCTTGGGCTGCTCGGTA 62.096 66.667 0.00 0.00 38.73 4.02
909 994 2.883267 CTACTGGGCTTGGGCTGCTC 62.883 65.000 0.00 0.00 38.73 4.26
910 995 2.935481 TACTGGGCTTGGGCTGCT 60.935 61.111 0.00 0.00 38.73 4.24
911 996 2.439156 CTACTGGGCTTGGGCTGC 60.439 66.667 0.00 0.00 38.73 5.25
912 997 0.618458 TAACTACTGGGCTTGGGCTG 59.382 55.000 0.00 0.00 38.73 4.85
913 998 1.212935 CATAACTACTGGGCTTGGGCT 59.787 52.381 0.00 0.00 38.73 5.19
914 999 1.680338 CATAACTACTGGGCTTGGGC 58.320 55.000 0.00 0.00 37.82 5.36
915 1000 1.750682 GCCATAACTACTGGGCTTGGG 60.751 57.143 0.00 0.00 43.09 4.12
916 1001 1.680338 GCCATAACTACTGGGCTTGG 58.320 55.000 0.00 0.00 43.09 3.61
921 1006 2.091885 ACAATGGGCCATAACTACTGGG 60.092 50.000 21.54 3.78 34.16 4.45
922 1007 3.214328 GACAATGGGCCATAACTACTGG 58.786 50.000 21.54 0.00 36.81 4.00
923 1008 2.872245 CGACAATGGGCCATAACTACTG 59.128 50.000 21.54 15.53 0.00 2.74
924 1009 2.769663 TCGACAATGGGCCATAACTACT 59.230 45.455 21.54 0.00 0.00 2.57
925 1010 3.188159 TCGACAATGGGCCATAACTAC 57.812 47.619 21.54 8.98 0.00 2.73
926 1011 3.244422 GGATCGACAATGGGCCATAACTA 60.244 47.826 21.54 6.81 0.00 2.24
927 1012 2.487265 GGATCGACAATGGGCCATAACT 60.487 50.000 21.54 4.70 0.00 2.24
928 1013 1.880027 GGATCGACAATGGGCCATAAC 59.120 52.381 21.54 12.85 0.00 1.89
929 1014 1.202879 GGGATCGACAATGGGCCATAA 60.203 52.381 21.54 3.69 0.00 1.90
930 1015 0.400213 GGGATCGACAATGGGCCATA 59.600 55.000 21.54 3.46 0.00 2.74
931 1016 1.151450 GGGATCGACAATGGGCCAT 59.849 57.895 14.78 14.78 0.00 4.40
932 1017 1.644437 ATGGGATCGACAATGGGCCA 61.644 55.000 9.61 9.61 0.00 5.36
933 1018 1.151450 ATGGGATCGACAATGGGCC 59.849 57.895 0.00 0.00 0.00 5.80
934 1019 1.174712 CCATGGGATCGACAATGGGC 61.175 60.000 2.85 0.00 0.00 5.36
935 1020 0.538057 CCCATGGGATCGACAATGGG 60.538 60.000 28.27 12.82 42.18 4.00
936 1021 0.473755 TCCCATGGGATCGACAATGG 59.526 55.000 30.62 2.95 39.76 3.16
937 1022 1.417517 TCTCCCATGGGATCGACAATG 59.582 52.381 33.89 19.04 44.24 2.82
938 1023 1.696336 CTCTCCCATGGGATCGACAAT 59.304 52.381 33.89 0.00 44.24 2.71
939 1024 1.123077 CTCTCCCATGGGATCGACAA 58.877 55.000 33.89 10.07 44.24 3.18
940 1025 1.402896 GCTCTCCCATGGGATCGACA 61.403 60.000 33.89 10.87 44.24 4.35
941 1026 1.369321 GCTCTCCCATGGGATCGAC 59.631 63.158 33.89 19.08 44.24 4.20
942 1027 1.075301 TGCTCTCCCATGGGATCGA 60.075 57.895 33.89 25.59 44.24 3.59
943 1028 1.370437 CTGCTCTCCCATGGGATCG 59.630 63.158 33.89 25.90 44.24 3.69
944 1029 1.759881 CCTGCTCTCCCATGGGATC 59.240 63.158 33.89 23.85 44.24 3.36
945 1030 1.773391 CCCTGCTCTCCCATGGGAT 60.773 63.158 33.89 0.00 44.24 3.85
946 1031 2.367377 CCCTGCTCTCCCATGGGA 60.367 66.667 31.83 31.83 42.90 4.37
947 1032 3.496160 CCCCTGCTCTCCCATGGG 61.496 72.222 26.30 26.30 34.89 4.00
948 1033 1.992519 CTTCCCCTGCTCTCCCATGG 61.993 65.000 4.14 4.14 0.00 3.66
949 1034 1.277580 ACTTCCCCTGCTCTCCCATG 61.278 60.000 0.00 0.00 0.00 3.66
950 1035 0.985490 GACTTCCCCTGCTCTCCCAT 60.985 60.000 0.00 0.00 0.00 4.00
951 1036 1.613630 GACTTCCCCTGCTCTCCCA 60.614 63.158 0.00 0.00 0.00 4.37
952 1037 2.726351 CGACTTCCCCTGCTCTCCC 61.726 68.421 0.00 0.00 0.00 4.30
953 1038 2.896443 CGACTTCCCCTGCTCTCC 59.104 66.667 0.00 0.00 0.00 3.71
954 1039 1.038130 TAGCGACTTCCCCTGCTCTC 61.038 60.000 0.00 0.00 38.82 3.20
955 1040 0.614979 TTAGCGACTTCCCCTGCTCT 60.615 55.000 0.00 0.00 38.82 4.09
956 1041 0.460459 GTTAGCGACTTCCCCTGCTC 60.460 60.000 0.00 0.00 38.82 4.26
957 1042 1.192146 TGTTAGCGACTTCCCCTGCT 61.192 55.000 0.00 0.00 41.32 4.24
958 1043 1.019805 GTGTTAGCGACTTCCCCTGC 61.020 60.000 0.00 0.00 0.00 4.85
959 1044 0.608640 AGTGTTAGCGACTTCCCCTG 59.391 55.000 0.00 0.00 0.00 4.45
960 1045 2.226962 TAGTGTTAGCGACTTCCCCT 57.773 50.000 0.00 0.00 0.00 4.79
961 1046 2.889852 CTTAGTGTTAGCGACTTCCCC 58.110 52.381 0.00 0.00 0.00 4.81
962 1047 2.094130 AGCTTAGTGTTAGCGACTTCCC 60.094 50.000 0.00 0.00 43.37 3.97
963 1048 3.233684 AGCTTAGTGTTAGCGACTTCC 57.766 47.619 0.00 0.00 43.37 3.46
964 1049 3.181529 GCAAGCTTAGTGTTAGCGACTTC 60.182 47.826 0.00 0.00 43.37 3.01
965 1050 2.737252 GCAAGCTTAGTGTTAGCGACTT 59.263 45.455 0.00 0.00 43.37 3.01
966 1051 2.028930 AGCAAGCTTAGTGTTAGCGACT 60.029 45.455 0.00 0.00 43.37 4.18
967 1052 2.338500 AGCAAGCTTAGTGTTAGCGAC 58.662 47.619 0.00 0.00 43.37 5.19
968 1053 2.743636 AGCAAGCTTAGTGTTAGCGA 57.256 45.000 0.00 0.00 43.37 4.93
969 1054 3.250744 TGTAGCAAGCTTAGTGTTAGCG 58.749 45.455 0.00 0.00 43.37 4.26
970 1055 6.517914 CTATGTAGCAAGCTTAGTGTTAGC 57.482 41.667 0.00 0.00 38.93 3.09
1071 5521 1.687493 CTGGAGAGGGTCAGGGTCC 60.687 68.421 0.00 0.00 0.00 4.46
1105 5555 2.978010 CGCCTTGCCGTTGAGGTT 60.978 61.111 0.00 0.00 43.70 3.50
1149 5599 2.967946 GCCGGCCTCTAACAAGGGT 61.968 63.158 18.11 0.00 36.88 4.34
1153 5603 2.263540 GTCGCCGGCCTCTAACAA 59.736 61.111 23.46 0.00 0.00 2.83
1157 5607 4.790962 AGTCGTCGCCGGCCTCTA 62.791 66.667 23.46 2.97 40.30 2.43
1682 9084 4.335416 TGAGACCATTTTAGGGAAAGCTG 58.665 43.478 0.00 0.00 0.00 4.24
1887 13033 7.411274 TCAACGAAAAGAACAAATACGACAAT 58.589 30.769 0.00 0.00 0.00 2.71
1888 13034 6.773080 TCAACGAAAAGAACAAATACGACAA 58.227 32.000 0.00 0.00 0.00 3.18
1889 13035 6.347270 TCAACGAAAAGAACAAATACGACA 57.653 33.333 0.00 0.00 0.00 4.35
1890 13036 6.130153 CGTTCAACGAAAAGAACAAATACGAC 60.130 38.462 3.01 0.00 46.05 4.34
1891 13037 5.897518 CGTTCAACGAAAAGAACAAATACGA 59.102 36.000 3.01 0.00 46.05 3.43
1892 13038 5.112937 CCGTTCAACGAAAAGAACAAATACG 59.887 40.000 12.68 0.00 46.05 3.06
1893 13039 6.193761 TCCGTTCAACGAAAAGAACAAATAC 58.806 36.000 12.68 0.00 46.05 1.89
1894 13040 6.360844 TCCGTTCAACGAAAAGAACAAATA 57.639 33.333 12.68 0.00 46.05 1.40
1895 13041 5.238006 TCCGTTCAACGAAAAGAACAAAT 57.762 34.783 12.68 0.00 46.05 2.32
1896 13042 4.681835 TCCGTTCAACGAAAAGAACAAA 57.318 36.364 12.68 0.00 46.05 2.83
1897 13043 4.681835 TTCCGTTCAACGAAAAGAACAA 57.318 36.364 12.68 0.00 46.05 2.83
1898 13044 4.886247 ATTCCGTTCAACGAAAAGAACA 57.114 36.364 12.68 0.00 46.05 3.18
2059 13251 6.371809 TGAACCGGTATATTTTGCATTCTC 57.628 37.500 8.00 0.00 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.