AutoCloner

Multiple sequence alignment - TraesCS4D01G030700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4D01G030700	chr4D	100.000	2675	0	0	1	2675	14460736	14458062	0.000000e+00	4940.0
1	TraesCS4D01G030700	chr4D	89.854	1508	121	17	461	1958	14908857	14910342	0.000000e+00	1908.0
2	TraesCS4D01G030700	chr4D	90.616	1460	102	13	554	2000	14914191	14915628	0.000000e+00	1905.0
3	TraesCS4D01G030700	chr4D	89.588	1287	100	13	730	2000	14862545	14863813	0.000000e+00	1604.0
4	TraesCS4D01G030700	chr4D	85.693	1314	124	32	698	1998	14851069	14852331	0.000000e+00	1327.0
5	TraesCS4D01G030700	chr4D	82.938	1055	115	29	816	1853	14839386	14838380	0.000000e+00	891.0
6	TraesCS4D01G030700	chr4D	82.031	896	137	17	996	1874	14936262	14937150	0.000000e+00	741.0
7	TraesCS4D01G030700	chr4D	87.141	661	51	23	2000	2645	14896465	14897106	0.000000e+00	719.0
8	TraesCS4D01G030700	chr4D	83.784	703	60	29	2000	2675	14863846	14864521	3.780000e-173	617.0
9	TraesCS4D01G030700	chr4D	84.211	494	36	16	1	459	14908321	14908807	2.440000e-120	442.0
10	TraesCS4D01G030700	chr4D	84.840	376	37	10	2311	2675	14922508	14922874	7.040000e-96	361.0
11	TraesCS4D01G030700	chr4D	85.350	314	34	9	1999	2302	14433197	14432886	5.560000e-82	315.0
12	TraesCS4D01G030700	chr4D	87.778	270	24	3	470	731	14840268	14840000	9.300000e-80	307.0
13	TraesCS4D01G030700	chr4D	84.639	319	32	12	1999	2302	14852365	14852681	4.330000e-78	302.0
14	TraesCS4D01G030700	chr4D	94.565	184	6	2	551	731	14850871	14851053	5.640000e-72	281.0
15	TraesCS4D01G030700	chr4D	88.235	187	11	3	5	187	14437279	14437100	2.090000e-51	213.0
16	TraesCS4D01G030700	chr4D	85.946	185	13	2	5	189	14867343	14867514	4.550000e-43	185.0
17	TraesCS4D01G030700	chr4D	92.424	66	5	0	35	100	14862089	14862154	7.880000e-16	95.3
18	TraesCS4D01G030700	chr4D	86.517	89	8	2	200	284	14895640	14895728	7.880000e-16	95.3
19	TraesCS4D01G030700	chr4B	87.665	1516	140	22	499	2000	24745296	24746778	0.000000e+00	1720.0
20	TraesCS4D01G030700	chr4B	86.706	1512	140	39	507	2000	24758963	24760431	0.000000e+00	1622.0
21	TraesCS4D01G030700	chr4B	86.533	1500	147	31	472	1958	24741145	24742602	0.000000e+00	1600.0
22	TraesCS4D01G030700	chr4B	85.381	1587	143	39	554	2095	24732835	24734377	0.000000e+00	1563.0
23	TraesCS4D01G030700	chr4B	86.550	342	30	5	9	342	24758548	24758881	1.960000e-96	363.0
24	TraesCS4D01G030700	chr4B	84.503	342	25	9	1	314	24744958	24745299	2.000000e-81	313.0
25	TraesCS4D01G030700	chr4B	81.915	376	45	15	2310	2675	24762112	24762474	2.010000e-76	296.0
26	TraesCS4D01G030700	chr4B	82.593	270	44	2	990	1259	24939717	24939451	4.450000e-58	235.0
27	TraesCS4D01G030700	chr4B	89.542	153	13	2	2000	2150	24755448	24755599	9.770000e-45	191.0
28	TraesCS4D01G030700	chr3B	86.450	1535	150	30	499	2017	452717425	452715933	0.000000e+00	1629.0
29	TraesCS4D01G030700	chr3B	88.252	349	19	12	481	810	452728414	452728759	5.370000e-107	398.0
30	TraesCS4D01G030700	chr3B	83.686	331	20	8	10	314	452717744	452717422	5.640000e-72	281.0
31	TraesCS4D01G030700	chr4A	86.587	1506	139	30	535	2017	586683187	586681722	0.000000e+00	1604.0
32	TraesCS4D01G030700	chr4A	86.126	1492	144	31	535	2000	456437594	456436140	0.000000e+00	1550.0
33	TraesCS4D01G030700	chr4A	87.080	1339	105	33	698	2017	586700172	586698883	0.000000e+00	1452.0
34	TraesCS4D01G030700	chr4A	88.382	1162	90	14	554	1701	456450398	456449268	0.000000e+00	1356.0
35	TraesCS4D01G030700	chr4A	90.090	111	11	0	1	111	456443568	456443458	7.720000e-31	145.0
36	TraesCS4D01G030700	chr4A	81.538	195	18	5	1	195	586683509	586683333	7.720000e-31	145.0
37	TraesCS4D01G030700	chr5D	82.979	94	13	2	2096	2186	487979575	487979482	6.140000e-12	82.4

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4D01G030700	chr4D	14458062	14460736	2674	True	4940.000000	4940	100.000000	1	2675	1	chr4D.!!$R1	2674
1	TraesCS4D01G030700	chr4D	14908321	14915628	7307	False	1418.333333	1908	88.227000	1	2000	3	chr4D.!!$F6	1999
2	TraesCS4D01G030700	chr4D	14936262	14937150	888	False	741.000000	741	82.031000	996	1874	1	chr4D.!!$F2	878
3	TraesCS4D01G030700	chr4D	14850871	14852681	1810	False	636.666667	1327	88.299000	551	2302	3	chr4D.!!$F3	1751
4	TraesCS4D01G030700	chr4D	14862089	14867514	5425	False	625.325000	1604	87.935500	5	2675	4	chr4D.!!$F4	2670
5	TraesCS4D01G030700	chr4D	14838380	14840268	1888	True	599.000000	891	85.358000	470	1853	2	chr4D.!!$R3	1383
6	TraesCS4D01G030700	chr4D	14895640	14897106	1466	False	407.150000	719	86.829000	200	2645	2	chr4D.!!$F5	2445
7	TraesCS4D01G030700	chr4D	14432886	14437279	4393	True	264.000000	315	86.792500	5	2302	2	chr4D.!!$R2	2297
8	TraesCS4D01G030700	chr4B	24732835	24734377	1542	False	1563.000000	1563	85.381000	554	2095	1	chr4B.!!$F1	1541
9	TraesCS4D01G030700	chr4B	24741145	24746778	5633	False	1211.000000	1720	86.233667	1	2000	3	chr4B.!!$F2	1999
10	TraesCS4D01G030700	chr4B	24755448	24762474	7026	False	618.000000	1622	86.178250	9	2675	4	chr4B.!!$F3	2666
11	TraesCS4D01G030700	chr3B	452715933	452717744	1811	True	955.000000	1629	85.068000	10	2017	2	chr3B.!!$R1	2007
12	TraesCS4D01G030700	chr4A	456436140	456437594	1454	True	1550.000000	1550	86.126000	535	2000	1	chr4A.!!$R1	1465
13	TraesCS4D01G030700	chr4A	586698883	586700172	1289	True	1452.000000	1452	87.080000	698	2017	1	chr4A.!!$R4	1319
14	TraesCS4D01G030700	chr4A	456449268	456450398	1130	True	1356.000000	1356	88.382000	554	1701	1	chr4A.!!$R3	1147
15	TraesCS4D01G030700	chr4A	586681722	586683509	1787	True	874.500000	1604	84.062500	1	2017	2	chr4A.!!$R5	2016

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
346	3529	0.580104	CAACGAAGAACGAAACGGCT	59.42	50.0	0.0	0.0	45.77	5.52	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2105	17762	0.812412	CAACAACGGACGGTGGTTCT	60.812	55.0	14.72	0.0	40.93	3.01	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
287	3470	0.947244	GGCGAGACCAATTAGCATGG	59.053	55.000	0.00	0.00	43.84	3.66
299	3482	3.552132	TTAGCATGGTCGGCTGAAATA	57.448	42.857	0.00	0.00	42.62	1.40
346	3529	0.580104	CAACGAAGAACGAAACGGCT	59.420	50.000	0.00	0.00	45.77	5.52
417	3600	4.021719	ACTTGTTTGATGAGGAATGCCAAG	60.022	41.667	0.00	0.00	36.29	3.61
419	3602	2.827921	GTTTGATGAGGAATGCCAAGGT	59.172	45.455	0.00	0.00	36.29	3.50
420	3603	2.133281	TGATGAGGAATGCCAAGGTG	57.867	50.000	0.00	0.00	36.29	4.00
427	3611	1.093159	GAATGCCAAGGTGAGAGCAG	58.907	55.000	0.00	0.00	38.89	4.24
443	3627	1.000607	AGCAGACAAGCAAGCACATTG	60.001	47.619	0.00	0.00	42.20	2.82
448	3632	3.319972	AGACAAGCAAGCACATTGTGATT	59.680	39.130	20.77	17.47	43.10	2.57
459	3643	4.171005	CACATTGTGATTTCCAGTGCATC	58.829	43.478	11.45	0.00	35.23	3.91
460	3644	3.194116	ACATTGTGATTTCCAGTGCATCC	59.806	43.478	0.00	0.00	0.00	3.51
462	3646	2.874014	TGTGATTTCCAGTGCATCCAA	58.126	42.857	0.00	0.00	0.00	3.53
464	3648	3.833650	TGTGATTTCCAGTGCATCCAATT	59.166	39.130	0.00	0.00	0.00	2.32
465	3649	5.015515	TGTGATTTCCAGTGCATCCAATTA	58.984	37.500	0.00	0.00	0.00	1.40
466	3650	5.125900	TGTGATTTCCAGTGCATCCAATTAG	59.874	40.000	0.00	0.00	0.00	1.73
491	3750	6.479001	GGCTAGCTTATTCGTTTTACATCTCA	59.521	38.462	15.72	0.00	0.00	3.27
502	3761	5.324697	GTTTTACATCTCATCTGTTTCGCC	58.675	41.667	0.00	0.00	0.00	5.54
519	3893	1.128692	CGCCGTTGAATGAAGACCTTC	59.871	52.381	2.94	2.94	39.91	3.46
542	3922	2.689035	TTTCACCATCAGCACGGCCA	62.689	55.000	2.24	0.00	0.00	5.36
572	3980	4.758165	TCATATGATTGACGCGTAGAGGTA	59.242	41.667	13.97	1.65	0.00	3.08
770	6211	2.029838	ATAAACTCTCTGCCTTGCCG	57.970	50.000	0.00	0.00	0.00	5.69
897	12134	1.748591	GCCTCACCATTCACTCATCCC	60.749	57.143	0.00	0.00	0.00	3.85
935	12175	2.008268	GCAGCAGCAACAACCAGTGT	62.008	55.000	0.00	0.00	44.64	3.55
938	12178	1.140852	AGCAGCAACAACCAGTGTCTA	59.859	47.619	0.00	0.00	40.60	2.59
1058	12311	2.422231	CGCTGCTCCTAGCTCCAGT	61.422	63.158	0.00	0.00	42.97	4.00
1159	12413	2.741985	CGTGCAAGCCCATGTCGA	60.742	61.111	0.00	0.00	0.00	4.20
1422	16814	1.004918	CGACTCCGGGAACAAGCTT	60.005	57.895	0.00	0.00	0.00	3.74
1482	16882	3.136123	CGGGGCCTCATGCACTTG	61.136	66.667	1.96	0.00	45.32	3.16
1518	16918	0.398522	AGACCGAGGCATCCATGGTA	60.399	55.000	12.58	0.00	34.26	3.25
1545	16945	3.175710	AACAGCCAGAACCCCGGT	61.176	61.111	0.00	0.00	0.00	5.28
1561	16961	0.248907	CGGTATCGTCTTCGTGCCAT	60.249	55.000	0.00	0.00	38.33	4.40
1563	16963	1.593006	GGTATCGTCTTCGTGCCATTG	59.407	52.381	0.00	0.00	38.33	2.82
1617	17017	2.032681	GTCCTCACCAAGGCGCTT	59.967	61.111	7.64	0.00	45.78	4.68
1664	17064	0.319555	CTCAAGTCCAAGTTCGCCGA	60.320	55.000	0.00	0.00	0.00	5.54
1707	17111	5.361857	AGCCTTCCCTGAAATGAACAATATG	59.638	40.000	0.00	0.00	0.00	1.78
1806	17407	4.971830	CGCATGCAGTTGTAATAAGATTGG	59.028	41.667	19.57	0.00	0.00	3.16
1808	17409	6.204359	GCATGCAGTTGTAATAAGATTGGAG	58.796	40.000	14.21	0.00	0.00	3.86
1820	17421	4.495690	AAGATTGGAGAAGTTAGCCTCC	57.504	45.455	0.00	0.00	46.99	4.30
1835	17445	1.950954	GCCTCCTGGTTTAGCCTTCAC	60.951	57.143	0.00	0.00	38.35	3.18
1886	17499	6.206498	ACTTTTATTGCCGTCTTTGTTCTTC	58.794	36.000	0.00	0.00	0.00	2.87
1893	17506	3.814945	CCGTCTTTGTTCTTCTCATTGC	58.185	45.455	0.00	0.00	0.00	3.56
1899	17512	5.182570	TCTTTGTTCTTCTCATTGCATGGAG	59.817	40.000	8.45	8.45	0.00	3.86
1913	17526	9.910267	TCATTGCATGGAGTATATAATTAGCAT	57.090	29.630	0.00	0.00	0.00	3.79
1950	17563	7.989416	TTTGTCCGATTACCTTTCATAAGTT	57.011	32.000	0.00	0.00	0.00	2.66
1973	17586	9.575783	AGTTAAACATGTTCAAACGTTTATGTT	57.424	25.926	24.19	24.19	39.59	2.71
2028	17674	5.845103	ACATTGTCAGAATGCAAAATGTGA	58.155	33.333	0.00	0.00	39.70	3.58
2054	17704	3.691118	GCATTGTAGCAATCTCCAGAACA	59.309	43.478	0.00	0.00	0.00	3.18
2146	17809	5.946298	TGCTTTGAGATTCATGCTACTTTG	58.054	37.500	0.00	0.00	30.95	2.77
2208	17884	5.688348	TTTTGTTGTTGTTGCGATTGTAC	57.312	34.783	0.00	0.00	0.00	2.90
2212	17888	4.202060	TGTTGTTGTTGCGATTGTACCATT	60.202	37.500	0.00	0.00	0.00	3.16
2233	17909	6.293081	CCATTATATTTCAGTCAAGTGGCTCG	60.293	42.308	0.00	0.00	0.00	5.03
2256	17940	4.806286	GCCGCTTATTTATATGGTGGACCT	60.806	45.833	0.00	0.00	36.82	3.85
2257	17941	4.935808	CCGCTTATTTATATGGTGGACCTC	59.064	45.833	0.00	0.00	36.82	3.85
2309	17994	5.875359	TGTTGTTCAAGGCGGTTTTAAATTT	59.125	32.000	0.00	0.00	0.00	1.82
2496	19506	4.567971	TGCCTGAAAATAGCAAACCAATG	58.432	39.130	0.00	0.00	32.56	2.82
2607	19625	2.695359	ACGTACTTTGTATGGTGCCTG	58.305	47.619	0.00	0.00	0.00	4.85

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
7	8	0.332972	GGCACAGGGAAGGGATTCTT	59.667	55.000	0.00	0.00	38.65	2.52
19	3112	1.732941	TAATAGCACGTTGGCACAGG	58.267	50.000	0.36	0.00	42.39	4.00
48	3146	2.109425	TCTCTTCTCGACCGATGACA	57.891	50.000	0.00	0.00	0.00	3.58
56	3154	6.771188	TCTTGTTTTGATTCTCTTCTCGAC	57.229	37.500	0.00	0.00	0.00	4.20
137	3258	1.077858	GGAAGCTTCTGGGCTCTGG	60.078	63.158	25.05	0.00	42.24	3.86
138	3259	1.077858	GGGAAGCTTCTGGGCTCTG	60.078	63.158	25.05	0.00	42.24	3.35
139	3260	0.918310	ATGGGAAGCTTCTGGGCTCT	60.918	55.000	25.05	1.99	42.24	4.09
140	3261	0.033699	AATGGGAAGCTTCTGGGCTC	60.034	55.000	25.05	7.92	42.24	4.70
417	3600	1.155042	CTTGCTTGTCTGCTCTCACC	58.845	55.000	0.00	0.00	0.00	4.02
419	3602	0.107268	TGCTTGCTTGTCTGCTCTCA	59.893	50.000	0.00	0.00	0.00	3.27
420	3603	0.516439	GTGCTTGCTTGTCTGCTCTC	59.484	55.000	0.00	0.00	0.00	3.20
427	3611	2.780065	TCACAATGTGCTTGCTTGTC	57.220	45.000	8.78	0.00	38.50	3.18
443	3627	4.460948	AATTGGATGCACTGGAAATCAC	57.539	40.909	0.00	0.00	0.00	3.06
448	3632	2.025037	AGCCTAATTGGATGCACTGGAA	60.025	45.455	0.00	0.00	38.35	3.53
459	3643	6.619801	AAACGAATAAGCTAGCCTAATTGG	57.380	37.500	12.13	12.03	39.35	3.16
460	3644	8.609176	TGTAAAACGAATAAGCTAGCCTAATTG	58.391	33.333	12.13	2.42	0.00	2.32
462	3646	8.904099	ATGTAAAACGAATAAGCTAGCCTAAT	57.096	30.769	12.13	0.00	0.00	1.73
464	3648	7.723324	AGATGTAAAACGAATAAGCTAGCCTA	58.277	34.615	12.13	2.59	0.00	3.93
465	3649	6.583562	AGATGTAAAACGAATAAGCTAGCCT	58.416	36.000	12.13	0.00	0.00	4.58
466	3650	6.479001	TGAGATGTAAAACGAATAAGCTAGCC	59.521	38.462	12.13	0.00	0.00	3.93
491	3750	2.422597	TCATTCAACGGCGAAACAGAT	58.577	42.857	16.62	0.00	0.00	2.90
502	3761	1.798223	TGCGAAGGTCTTCATTCAACG	59.202	47.619	10.79	0.00	39.46	4.10
519	3893	0.521867	CGTGCTGATGGTGAAATGCG	60.522	55.000	0.00	0.00	0.00	4.73
542	3922	4.811024	ACGCGTCAATCATATGAAGTTCAT	59.189	37.500	21.57	21.57	40.72	2.57
572	3980	4.385825	ACGGGTTCATAATATTCGTGCAT	58.614	39.130	0.00	0.00	0.00	3.96
671	5679	1.003233	GGTGAGAGTCAAGGCCACC	60.003	63.158	5.01	0.00	40.20	4.61
770	6211	1.358402	TGTGCAAATGGACACACGC	59.642	52.632	3.46	0.00	41.48	5.34
897	12134	1.645034	CTAAGCTGTGGTGGATGACG	58.355	55.000	0.00	0.00	0.00	4.35
935	12175	6.042093	AGTTTGTTGATGGAGAGTGTCTTAGA	59.958	38.462	0.00	0.00	0.00	2.10
938	12178	5.041191	AGTTTGTTGATGGAGAGTGTCTT	57.959	39.130	0.00	0.00	0.00	3.01
1040	12293	2.348605	GACTGGAGCTAGGAGCAGCG	62.349	65.000	0.64	0.00	45.56	5.18
1058	12311	2.753043	GGTCGGTAGCCAGGACGA	60.753	66.667	0.00	0.00	0.00	4.20
1159	12413	2.125106	GAAGTCATCGCCGGCCTT	60.125	61.111	23.46	17.98	0.00	4.35
1170	12424	2.287977	TGGACGAGAAGAGGAAGTCA	57.712	50.000	0.00	0.00	33.84	3.41
1422	16814	2.967397	CGCACCACCCTCGAGTAA	59.033	61.111	12.31	0.00	0.00	2.24
1482	16882	1.454653	GTCTTACCGACGTTGAACTGC	59.545	52.381	3.74	0.00	32.04	4.40
1509	16909	4.104086	TGTTGAAGGAGACTACCATGGAT	58.896	43.478	21.47	5.32	42.68	3.41
1545	16945	2.094442	TGTCAATGGCACGAAGACGATA	60.094	45.455	0.00	0.00	42.66	2.92
1561	16961	2.485479	GGTTGGAGCTGAAGAGTGTCAA	60.485	50.000	0.00	0.00	0.00	3.18
1563	16963	1.609320	GGGTTGGAGCTGAAGAGTGTC	60.609	57.143	0.00	0.00	0.00	3.67
1664	17064	3.374764	GCTCCCAGGAATTAAAACCCAT	58.625	45.455	0.00	0.00	0.00	4.00
1758	17350	8.717821	CGAGATTAACCTGAAACTTGAATACAA	58.282	33.333	0.00	0.00	34.65	2.41
1806	17407	3.704800	AAACCAGGAGGCTAACTTCTC	57.295	47.619	0.00	0.00	39.06	2.87
1808	17409	3.271729	GCTAAACCAGGAGGCTAACTTC	58.728	50.000	0.00	0.00	39.06	3.01
1820	17421	2.582052	TGGTTGTGAAGGCTAAACCAG	58.418	47.619	15.84	0.00	45.41	4.00
1835	17445	8.906867	AGTACATTCAATTCCTCATATTGGTTG	58.093	33.333	0.00	0.00	34.51	3.77
1950	17563	9.156156	CGTAACATAAACGTTTGAACATGTTTA	57.844	29.630	30.10	19.31	40.04	2.01
1961	17574	5.554822	ATGCCATCGTAACATAAACGTTT	57.445	34.783	18.90	18.90	41.08	3.60
1964	17577	6.223138	ACATATGCCATCGTAACATAAACG	57.777	37.500	1.58	0.00	41.64	3.60
1973	17586	2.035321	TCGCTCAACATATGCCATCGTA	59.965	45.455	1.58	0.00	0.00	3.43
2028	17674	3.623703	TGGAGATTGCTACAATGCATGT	58.376	40.909	0.00	3.37	46.36	3.21
2105	17762	0.812412	CAACAACGGACGGTGGTTCT	60.812	55.000	14.72	0.00	40.93	3.01
2108	17765	2.879813	AAGCAACAACGGACGGTGGT	62.880	55.000	14.72	4.23	37.09	4.16
2186	17856	4.563184	GGTACAATCGCAACAACAACAAAA	59.437	37.500	0.00	0.00	0.00	2.44
2190	17860	3.341857	TGGTACAATCGCAACAACAAC	57.658	42.857	0.00	0.00	31.92	3.32
2208	17884	6.293081	CGAGCCACTTGACTGAAATATAATGG	60.293	42.308	0.00	0.00	0.00	3.16
2212	17888	4.119862	GCGAGCCACTTGACTGAAATATA	58.880	43.478	0.00	0.00	0.00	0.86
2233	17909	3.439129	GGTCCACCATATAAATAAGCGGC	59.561	47.826	0.00	0.00	35.64	6.53
2256	17940	0.837691	ACTGTGGGTGAGCATGGAGA	60.838	55.000	0.00	0.00	0.00	3.71
2257	17941	1.681666	ACTGTGGGTGAGCATGGAG	59.318	57.895	0.00	0.00	0.00	3.86
2479	19489	5.164061	CGTTCTGCATTGGTTTGCTATTTTC	60.164	40.000	0.00	0.00	43.18	2.29
2496	19506	5.153513	TGTCAAAATTAAGCATCGTTCTGC	58.846	37.500	0.00	0.19	42.62	4.26
2555	19566	8.457238	AATATTGATCCTGAAGGCTTCTAAAC	57.543	34.615	26.26	14.52	34.44	2.01

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.