Multiple sequence alignment - TraesCS4D01G030000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G030000 chr4D 100.000 2787 0 0 1 2787 13254367 13251581 0.000000e+00 5147
1 TraesCS4D01G030000 chr4D 94.334 353 19 1 410 761 509505775 509505423 8.780000e-150 540
2 TraesCS4D01G030000 chr4A 94.512 1148 46 11 755 1894 588939254 588940392 0.000000e+00 1755
3 TraesCS4D01G030000 chr4A 91.225 661 38 7 2127 2784 589006991 589007634 0.000000e+00 881
4 TraesCS4D01G030000 chr4A 87.742 310 25 7 1 308 588938833 588939131 1.590000e-92 350
5 TraesCS4D01G030000 chr4A 93.605 172 10 1 1961 2132 588960511 588960681 3.560000e-64 255
6 TraesCS4D01G030000 chr3B 90.366 1121 57 21 755 1855 454656550 454657639 0.000000e+00 1424
7 TraesCS4D01G030000 chr3B 91.503 306 18 8 1 304 454656124 454656423 5.550000e-112 414
8 TraesCS4D01G030000 chr4B 87.707 1147 62 21 755 1855 24052134 24051021 0.000000e+00 1264
9 TraesCS4D01G030000 chr4B 88.852 305 25 6 1 304 24053768 24053472 1.580000e-97 366
10 TraesCS4D01G030000 chr6B 95.429 350 15 1 410 758 49952551 49952900 8.720000e-155 556
11 TraesCS4D01G030000 chr7D 94.350 354 17 3 410 761 133690523 133690171 8.780000e-150 540
12 TraesCS4D01G030000 chr7D 94.334 353 17 3 410 761 610487231 610486881 3.160000e-149 538
13 TraesCS4D01G030000 chr2D 94.085 355 17 4 410 761 10488298 10487945 1.140000e-148 536
14 TraesCS4D01G030000 chr2D 94.085 355 17 4 410 761 10505419 10505066 1.140000e-148 536
15 TraesCS4D01G030000 chr1D 94.286 350 18 2 410 758 22477466 22477814 4.090000e-148 534
16 TraesCS4D01G030000 chr1A 94.269 349 17 3 408 755 45858469 45858815 5.290000e-147 531
17 TraesCS4D01G030000 chr2A 92.126 381 20 6 383 758 469791473 469791848 1.900000e-146 529


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G030000 chr4D 13251581 13254367 2786 True 5147.0 5147 100.0000 1 2787 1 chr4D.!!$R1 2786
1 TraesCS4D01G030000 chr4A 588938833 588940392 1559 False 1052.5 1755 91.1270 1 1894 2 chr4A.!!$F3 1893
2 TraesCS4D01G030000 chr4A 589006991 589007634 643 False 881.0 881 91.2250 2127 2784 1 chr4A.!!$F2 657
3 TraesCS4D01G030000 chr3B 454656124 454657639 1515 False 919.0 1424 90.9345 1 1855 2 chr3B.!!$F1 1854
4 TraesCS4D01G030000 chr4B 24051021 24053768 2747 True 815.0 1264 88.2795 1 1855 2 chr4B.!!$R1 1854

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
439 1674 0.108615 AACGAAGACCGAGCTCCATG 60.109 55.0 8.47 0.0 41.76 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2066 3368 0.03213 TGAGCGAGTGAGCGAGTTTT 59.968 50.0 0.0 0.0 43.0 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
126 128 9.284594 GCAATGTTGTCAATAATATACAAACGT 57.715 29.630 0.00 0.00 35.08 3.99
140 142 1.265905 CAAACGTGGAGTAAAGGGTGC 59.734 52.381 0.00 0.00 0.00 5.01
144 147 1.274167 CGTGGAGTAAAGGGTGCACTA 59.726 52.381 17.98 0.00 33.17 2.74
156 159 3.511146 AGGGTGCACTATTGGACAATTTG 59.489 43.478 17.98 3.00 45.62 2.32
163 166 5.735922 GCACTATTGGACAATTTGTGTGTGT 60.736 40.000 20.81 0.00 41.96 3.72
164 167 5.686841 CACTATTGGACAATTTGTGTGTGTG 59.313 40.000 6.80 5.01 41.96 3.82
165 168 4.734398 ATTGGACAATTTGTGTGTGTGT 57.266 36.364 6.80 0.00 41.96 3.72
166 169 3.500558 TGGACAATTTGTGTGTGTGTG 57.499 42.857 6.80 0.00 41.96 3.82
182 187 3.874543 GTGTGTGTGTGTGTGGATAAAGA 59.125 43.478 0.00 0.00 0.00 2.52
231 236 1.205655 CTGTCGAGATGAAGCCAAGGA 59.794 52.381 0.00 0.00 0.00 3.36
304 309 1.335182 TGGTCGCAATTTCTTTTCGCA 59.665 42.857 0.00 0.00 0.00 5.10
308 313 2.032799 TCGCAATTTCTTTTCGCAGTGT 59.967 40.909 0.00 0.00 0.00 3.55
309 314 3.248841 TCGCAATTTCTTTTCGCAGTGTA 59.751 39.130 0.00 0.00 0.00 2.90
310 315 3.357823 CGCAATTTCTTTTCGCAGTGTAC 59.642 43.478 0.00 0.00 0.00 2.90
311 316 4.286910 GCAATTTCTTTTCGCAGTGTACA 58.713 39.130 0.00 0.00 0.00 2.90
314 319 5.751243 ATTTCTTTTCGCAGTGTACAAGT 57.249 34.783 0.00 0.00 0.00 3.16
315 320 5.554822 TTTCTTTTCGCAGTGTACAAGTT 57.445 34.783 0.00 0.00 0.00 2.66
316 321 5.554822 TTCTTTTCGCAGTGTACAAGTTT 57.445 34.783 0.00 0.00 0.00 2.66
317 322 5.554822 TCTTTTCGCAGTGTACAAGTTTT 57.445 34.783 0.00 0.00 0.00 2.43
318 323 6.665474 TCTTTTCGCAGTGTACAAGTTTTA 57.335 33.333 0.00 0.00 0.00 1.52
319 324 6.480285 TCTTTTCGCAGTGTACAAGTTTTAC 58.520 36.000 0.00 0.00 0.00 2.01
322 327 4.435425 TCGCAGTGTACAAGTTTTACAGT 58.565 39.130 0.00 3.14 34.09 3.55
323 328 4.269123 TCGCAGTGTACAAGTTTTACAGTG 59.731 41.667 23.79 23.79 46.84 3.66
327 332 6.632834 GCAGTGTACAAGTTTTACAGTGATTG 59.367 38.462 28.95 12.02 46.99 2.67
329 334 7.011950 CAGTGTACAAGTTTTACAGTGATTGGA 59.988 37.037 23.79 0.00 46.99 3.53
330 335 7.012044 AGTGTACAAGTTTTACAGTGATTGGAC 59.988 37.037 8.41 0.00 32.84 4.02
332 337 7.554835 TGTACAAGTTTTACAGTGATTGGACTT 59.445 33.333 0.00 0.00 33.57 3.01
338 343 8.190784 AGTTTTACAGTGATTGGACTTTTCTTG 58.809 33.333 0.00 0.00 0.00 3.02
340 345 7.496529 TTACAGTGATTGGACTTTTCTTGAG 57.503 36.000 0.00 0.00 0.00 3.02
341 346 4.276926 ACAGTGATTGGACTTTTCTTGAGC 59.723 41.667 0.00 0.00 0.00 4.26
342 347 3.823304 AGTGATTGGACTTTTCTTGAGCC 59.177 43.478 0.00 0.00 0.00 4.70
344 349 2.341846 TTGGACTTTTCTTGAGCCGT 57.658 45.000 0.00 0.00 0.00 5.68
345 350 2.341846 TGGACTTTTCTTGAGCCGTT 57.658 45.000 0.00 0.00 0.00 4.44
346 351 2.218603 TGGACTTTTCTTGAGCCGTTC 58.781 47.619 0.00 0.00 0.00 3.95
419 1654 9.990360 TTTATGAGATATACTACGAAAATGCCA 57.010 29.630 0.00 0.00 0.00 4.92
420 1655 9.990360 TTATGAGATATACTACGAAAATGCCAA 57.010 29.630 0.00 0.00 0.00 4.52
421 1656 8.902540 ATGAGATATACTACGAAAATGCCAAA 57.097 30.769 0.00 0.00 0.00 3.28
422 1657 8.138365 TGAGATATACTACGAAAATGCCAAAC 57.862 34.615 0.00 0.00 0.00 2.93
423 1658 7.042992 TGAGATATACTACGAAAATGCCAAACG 60.043 37.037 0.00 0.00 0.00 3.60
424 1659 6.982141 AGATATACTACGAAAATGCCAAACGA 59.018 34.615 0.00 0.00 0.00 3.85
425 1660 5.866335 ATACTACGAAAATGCCAAACGAA 57.134 34.783 0.00 0.00 0.00 3.85
426 1661 4.141855 ACTACGAAAATGCCAAACGAAG 57.858 40.909 0.00 0.00 0.00 3.79
427 1662 3.810941 ACTACGAAAATGCCAAACGAAGA 59.189 39.130 0.00 0.00 0.00 2.87
428 1663 2.994849 ACGAAAATGCCAAACGAAGAC 58.005 42.857 0.00 0.00 0.00 3.01
429 1664 2.287368 ACGAAAATGCCAAACGAAGACC 60.287 45.455 0.00 0.00 0.00 3.85
430 1665 2.315901 GAAAATGCCAAACGAAGACCG 58.684 47.619 0.00 0.00 45.44 4.79
431 1666 1.600023 AAATGCCAAACGAAGACCGA 58.400 45.000 0.00 0.00 41.76 4.69
432 1667 1.156736 AATGCCAAACGAAGACCGAG 58.843 50.000 0.00 0.00 41.76 4.63
433 1668 1.298859 ATGCCAAACGAAGACCGAGC 61.299 55.000 0.00 0.00 41.76 5.03
434 1669 1.668151 GCCAAACGAAGACCGAGCT 60.668 57.895 0.00 0.00 41.76 4.09
435 1670 1.627550 GCCAAACGAAGACCGAGCTC 61.628 60.000 2.73 2.73 41.76 4.09
436 1671 1.014564 CCAAACGAAGACCGAGCTCC 61.015 60.000 8.47 0.00 41.76 4.70
437 1672 0.319555 CAAACGAAGACCGAGCTCCA 60.320 55.000 8.47 0.00 41.76 3.86
438 1673 0.608640 AAACGAAGACCGAGCTCCAT 59.391 50.000 8.47 0.00 41.76 3.41
439 1674 0.108615 AACGAAGACCGAGCTCCATG 60.109 55.000 8.47 0.00 41.76 3.66
440 1675 0.965866 ACGAAGACCGAGCTCCATGA 60.966 55.000 8.47 0.00 41.76 3.07
441 1676 0.173481 CGAAGACCGAGCTCCATGAA 59.827 55.000 8.47 0.00 41.76 2.57
442 1677 1.800655 CGAAGACCGAGCTCCATGAAG 60.801 57.143 8.47 0.00 41.76 3.02
443 1678 0.539051 AAGACCGAGCTCCATGAAGG 59.461 55.000 8.47 4.75 39.47 3.46
444 1679 1.522580 GACCGAGCTCCATGAAGGC 60.523 63.158 8.47 0.00 37.29 4.35
445 1680 2.203126 CCGAGCTCCATGAAGGCC 60.203 66.667 8.47 0.00 37.29 5.19
446 1681 2.739996 CCGAGCTCCATGAAGGCCT 61.740 63.158 8.47 0.00 37.29 5.19
447 1682 1.222936 CGAGCTCCATGAAGGCCTT 59.777 57.895 20.65 20.65 37.29 4.35
448 1683 0.393537 CGAGCTCCATGAAGGCCTTT 60.394 55.000 21.54 0.44 37.29 3.11
449 1684 1.134401 CGAGCTCCATGAAGGCCTTTA 60.134 52.381 21.54 17.17 37.29 1.85
450 1685 2.486191 CGAGCTCCATGAAGGCCTTTAT 60.486 50.000 21.54 18.94 37.29 1.40
451 1686 3.560105 GAGCTCCATGAAGGCCTTTATT 58.440 45.455 21.54 5.18 37.29 1.40
452 1687 3.956848 GAGCTCCATGAAGGCCTTTATTT 59.043 43.478 21.54 0.00 37.29 1.40
453 1688 5.129368 AGCTCCATGAAGGCCTTTATTTA 57.871 39.130 21.54 10.02 37.29 1.40
454 1689 5.518865 AGCTCCATGAAGGCCTTTATTTAA 58.481 37.500 21.54 7.54 37.29 1.52
455 1690 5.957774 AGCTCCATGAAGGCCTTTATTTAAA 59.042 36.000 21.54 5.11 37.29 1.52
456 1691 6.440328 AGCTCCATGAAGGCCTTTATTTAAAA 59.560 34.615 21.54 3.38 37.29 1.52
457 1692 7.038373 AGCTCCATGAAGGCCTTTATTTAAAAA 60.038 33.333 21.54 1.69 37.29 1.94
458 1693 7.064609 GCTCCATGAAGGCCTTTATTTAAAAAC 59.935 37.037 21.54 2.76 37.29 2.43
459 1694 8.201242 TCCATGAAGGCCTTTATTTAAAAACT 57.799 30.769 21.54 0.00 37.29 2.66
460 1695 8.655901 TCCATGAAGGCCTTTATTTAAAAACTT 58.344 29.630 21.54 0.00 37.29 2.66
461 1696 8.935844 CCATGAAGGCCTTTATTTAAAAACTTC 58.064 33.333 21.54 1.46 34.01 3.01
462 1697 9.487790 CATGAAGGCCTTTATTTAAAAACTTCA 57.512 29.630 21.54 8.02 39.98 3.02
464 1699 9.892130 TGAAGGCCTTTATTTAAAAACTTCAAA 57.108 25.926 21.54 0.00 36.90 2.69
538 1773 9.809096 AGCTAGATACATAATATACATGTGTGC 57.191 33.333 9.11 0.00 37.22 4.57
539 1774 9.586435 GCTAGATACATAATATACATGTGTGCA 57.414 33.333 9.11 0.00 37.22 4.57
551 1786 9.801873 ATATACATGTGTGCAAATTTTTAGGTC 57.198 29.630 9.11 0.00 0.00 3.85
552 1787 4.981674 ACATGTGTGCAAATTTTTAGGTCG 59.018 37.500 0.00 0.00 0.00 4.79
553 1788 4.902443 TGTGTGCAAATTTTTAGGTCGA 57.098 36.364 0.00 0.00 0.00 4.20
554 1789 5.250235 TGTGTGCAAATTTTTAGGTCGAA 57.750 34.783 0.00 0.00 0.00 3.71
555 1790 5.651530 TGTGTGCAAATTTTTAGGTCGAAA 58.348 33.333 0.00 0.00 0.00 3.46
556 1791 6.276847 TGTGTGCAAATTTTTAGGTCGAAAT 58.723 32.000 0.00 0.00 0.00 2.17
557 1792 7.426410 TGTGTGCAAATTTTTAGGTCGAAATA 58.574 30.769 0.00 0.00 0.00 1.40
558 1793 7.380065 TGTGTGCAAATTTTTAGGTCGAAATAC 59.620 33.333 0.00 0.00 0.00 1.89
559 1794 7.380065 GTGTGCAAATTTTTAGGTCGAAATACA 59.620 33.333 0.00 0.00 0.00 2.29
560 1795 7.921214 TGTGCAAATTTTTAGGTCGAAATACAA 59.079 29.630 0.00 0.00 0.00 2.41
561 1796 8.921670 GTGCAAATTTTTAGGTCGAAATACAAT 58.078 29.630 0.00 0.00 0.00 2.71
572 1807 7.472543 AGGTCGAAATACAATAAAATGTGAGC 58.527 34.615 0.00 0.00 34.75 4.26
573 1808 7.336931 AGGTCGAAATACAATAAAATGTGAGCT 59.663 33.333 0.00 0.00 34.75 4.09
574 1809 8.609176 GGTCGAAATACAATAAAATGTGAGCTA 58.391 33.333 0.00 0.00 34.75 3.32
575 1810 9.422196 GTCGAAATACAATAAAATGTGAGCTAC 57.578 33.333 0.00 0.00 34.75 3.58
576 1811 9.157104 TCGAAATACAATAAAATGTGAGCTACA 57.843 29.630 0.00 0.00 44.87 2.74
614 1849 9.561069 AATCTGGGCTTTTTAGTATATGTACTG 57.439 33.333 12.05 0.00 41.22 2.74
615 1850 8.086143 TCTGGGCTTTTTAGTATATGTACTGT 57.914 34.615 12.05 0.00 41.22 3.55
616 1851 8.545472 TCTGGGCTTTTTAGTATATGTACTGTT 58.455 33.333 12.05 0.00 41.22 3.16
617 1852 8.726870 TGGGCTTTTTAGTATATGTACTGTTC 57.273 34.615 12.05 0.00 41.22 3.18
618 1853 8.322828 TGGGCTTTTTAGTATATGTACTGTTCA 58.677 33.333 12.05 0.00 41.22 3.18
619 1854 9.338622 GGGCTTTTTAGTATATGTACTGTTCAT 57.661 33.333 12.05 5.26 41.22 2.57
633 1868 8.322906 TGTACTGTTCATCTTTAAAGTCCATG 57.677 34.615 14.74 11.19 0.00 3.66
634 1869 8.154203 TGTACTGTTCATCTTTAAAGTCCATGA 58.846 33.333 14.74 13.14 0.00 3.07
635 1870 9.167311 GTACTGTTCATCTTTAAAGTCCATGAT 57.833 33.333 14.74 5.19 0.00 2.45
636 1871 8.641498 ACTGTTCATCTTTAAAGTCCATGATT 57.359 30.769 14.74 1.07 0.00 2.57
637 1872 9.082313 ACTGTTCATCTTTAAAGTCCATGATTT 57.918 29.630 14.74 0.00 0.00 2.17
638 1873 9.918630 CTGTTCATCTTTAAAGTCCATGATTTT 57.081 29.630 14.74 0.00 0.00 1.82
639 1874 9.695526 TGTTCATCTTTAAAGTCCATGATTTTG 57.304 29.630 14.74 0.53 0.00 2.44
640 1875 8.650714 GTTCATCTTTAAAGTCCATGATTTTGC 58.349 33.333 14.74 3.28 0.00 3.68
641 1876 8.125978 TCATCTTTAAAGTCCATGATTTTGCT 57.874 30.769 14.74 0.00 0.00 3.91
642 1877 8.587608 TCATCTTTAAAGTCCATGATTTTGCTT 58.412 29.630 14.74 0.00 0.00 3.91
643 1878 9.211485 CATCTTTAAAGTCCATGATTTTGCTTT 57.789 29.630 14.74 0.00 0.00 3.51
644 1879 9.783081 ATCTTTAAAGTCCATGATTTTGCTTTT 57.217 25.926 14.74 0.00 0.00 2.27
645 1880 9.612066 TCTTTAAAGTCCATGATTTTGCTTTTT 57.388 25.926 14.74 0.00 0.00 1.94
667 1902 4.779819 GCAGCTCGCAATTGAAGG 57.220 55.556 10.34 0.00 41.79 3.46
668 1903 1.878775 GCAGCTCGCAATTGAAGGT 59.121 52.632 10.34 8.33 41.79 3.50
669 1904 1.086696 GCAGCTCGCAATTGAAGGTA 58.913 50.000 10.34 0.00 41.79 3.08
670 1905 1.672881 GCAGCTCGCAATTGAAGGTAT 59.327 47.619 10.34 0.00 41.79 2.73
671 1906 2.098117 GCAGCTCGCAATTGAAGGTATT 59.902 45.455 10.34 0.00 41.79 1.89
672 1907 3.428045 GCAGCTCGCAATTGAAGGTATTT 60.428 43.478 10.34 0.00 41.79 1.40
673 1908 4.346129 CAGCTCGCAATTGAAGGTATTTC 58.654 43.478 10.34 0.00 36.29 2.17
674 1909 4.009675 AGCTCGCAATTGAAGGTATTTCA 58.990 39.130 10.34 0.00 43.92 2.69
675 1910 4.641989 AGCTCGCAATTGAAGGTATTTCAT 59.358 37.500 10.34 0.00 44.90 2.57
676 1911 4.972440 GCTCGCAATTGAAGGTATTTCATC 59.028 41.667 10.34 0.00 44.90 2.92
677 1912 5.499139 TCGCAATTGAAGGTATTTCATCC 57.501 39.130 10.34 0.00 44.90 3.51
678 1913 5.192927 TCGCAATTGAAGGTATTTCATCCT 58.807 37.500 10.34 0.00 44.90 3.24
679 1914 5.066375 TCGCAATTGAAGGTATTTCATCCTG 59.934 40.000 10.34 0.00 44.90 3.86
680 1915 5.066375 CGCAATTGAAGGTATTTCATCCTGA 59.934 40.000 10.34 0.00 44.90 3.86
681 1916 6.404623 CGCAATTGAAGGTATTTCATCCTGAA 60.405 38.462 10.34 0.00 44.90 3.02
696 1931 9.474920 TTTCATCCTGAAATTTTTCACACATAC 57.525 29.630 1.66 0.00 41.02 2.39
697 1932 8.175925 TCATCCTGAAATTTTTCACACATACA 57.824 30.769 1.66 0.00 41.88 2.29
698 1933 8.081633 TCATCCTGAAATTTTTCACACATACAC 58.918 33.333 1.66 0.00 41.88 2.90
699 1934 7.581213 TCCTGAAATTTTTCACACATACACT 57.419 32.000 1.66 0.00 41.88 3.55
700 1935 8.006298 TCCTGAAATTTTTCACACATACACTT 57.994 30.769 1.66 0.00 41.88 3.16
701 1936 8.474025 TCCTGAAATTTTTCACACATACACTTT 58.526 29.630 1.66 0.00 41.88 2.66
702 1937 9.743057 CCTGAAATTTTTCACACATACACTTTA 57.257 29.630 1.66 0.00 41.88 1.85
707 1942 9.691362 AATTTTTCACACATACACTTTACATCC 57.309 29.630 0.00 0.00 0.00 3.51
708 1943 8.458573 TTTTTCACACATACACTTTACATCCT 57.541 30.769 0.00 0.00 0.00 3.24
709 1944 8.458573 TTTTCACACATACACTTTACATCCTT 57.541 30.769 0.00 0.00 0.00 3.36
710 1945 7.433708 TTCACACATACACTTTACATCCTTG 57.566 36.000 0.00 0.00 0.00 3.61
711 1946 5.411361 TCACACATACACTTTACATCCTTGC 59.589 40.000 0.00 0.00 0.00 4.01
712 1947 5.181056 CACACATACACTTTACATCCTTGCA 59.819 40.000 0.00 0.00 0.00 4.08
713 1948 5.945784 ACACATACACTTTACATCCTTGCAT 59.054 36.000 0.00 0.00 0.00 3.96
714 1949 7.065683 CACACATACACTTTACATCCTTGCATA 59.934 37.037 0.00 0.00 0.00 3.14
715 1950 7.065803 ACACATACACTTTACATCCTTGCATAC 59.934 37.037 0.00 0.00 0.00 2.39
716 1951 7.065683 CACATACACTTTACATCCTTGCATACA 59.934 37.037 0.00 0.00 0.00 2.29
717 1952 7.775093 ACATACACTTTACATCCTTGCATACAT 59.225 33.333 0.00 0.00 0.00 2.29
718 1953 6.441093 ACACTTTACATCCTTGCATACATG 57.559 37.500 0.00 0.00 0.00 3.21
719 1954 5.945784 ACACTTTACATCCTTGCATACATGT 59.054 36.000 2.69 2.69 33.95 3.21
720 1955 6.127925 ACACTTTACATCCTTGCATACATGTG 60.128 38.462 9.11 0.00 31.83 3.21
721 1956 5.945784 ACTTTACATCCTTGCATACATGTGT 59.054 36.000 9.11 0.00 31.83 3.72
722 1957 7.065683 CACTTTACATCCTTGCATACATGTGTA 59.934 37.037 9.11 0.00 31.83 2.90
723 1958 7.609918 ACTTTACATCCTTGCATACATGTGTAA 59.390 33.333 9.11 1.48 33.76 2.41
724 1959 8.518430 TTTACATCCTTGCATACATGTGTAAT 57.482 30.769 9.11 0.00 32.76 1.89
725 1960 8.518430 TTACATCCTTGCATACATGTGTAATT 57.482 30.769 9.11 0.00 33.76 1.40
726 1961 7.408756 ACATCCTTGCATACATGTGTAATTT 57.591 32.000 9.11 0.00 33.76 1.82
727 1962 7.839907 ACATCCTTGCATACATGTGTAATTTT 58.160 30.769 9.11 0.00 33.76 1.82
728 1963 8.313292 ACATCCTTGCATACATGTGTAATTTTT 58.687 29.630 9.11 0.00 33.76 1.94
772 2010 4.799564 ATTTATGCATGGTTGGTTCGTT 57.200 36.364 10.16 0.00 0.00 3.85
790 2028 7.858382 TGGTTCGTTCAACAACTTGTTATTATG 59.142 33.333 6.84 0.00 38.77 1.90
791 2029 7.858879 GGTTCGTTCAACAACTTGTTATTATGT 59.141 33.333 6.84 0.00 38.77 2.29
866 2116 4.518590 TCAGACAGAGAGAGAAACAGTGAG 59.481 45.833 0.00 0.00 0.00 3.51
1040 2314 0.821711 CCACGGAAAGGCAGACCAAA 60.822 55.000 0.00 0.00 39.06 3.28
1042 2316 1.407258 CACGGAAAGGCAGACCAAAAA 59.593 47.619 0.00 0.00 39.06 1.94
1043 2317 1.681264 ACGGAAAGGCAGACCAAAAAG 59.319 47.619 0.00 0.00 39.06 2.27
1059 2337 1.529744 AAAGAGACTCCCAAACCCCA 58.470 50.000 0.00 0.00 0.00 4.96
1060 2338 1.760405 AAGAGACTCCCAAACCCCAT 58.240 50.000 0.00 0.00 0.00 4.00
1065 2343 2.041216 AGACTCCCAAACCCCATAACAC 59.959 50.000 0.00 0.00 0.00 3.32
1095 2376 0.105593 CATGTCTCCCCTCACCATCG 59.894 60.000 0.00 0.00 0.00 3.84
1286 2570 0.317436 GCGACTACCAGATCGAGCTG 60.317 60.000 23.51 23.51 40.86 4.24
1614 2898 0.387367 CGAGGTGTGAGTGACTTCCG 60.387 60.000 0.00 0.00 0.00 4.30
1627 2911 3.107642 GACTTCCGAGTCCAAAGTTCA 57.892 47.619 6.33 0.00 45.34 3.18
1731 3031 7.587037 AAAAGAGAGATGAGACTATGAGAGG 57.413 40.000 0.00 0.00 0.00 3.69
1766 3066 1.347707 GATCTGCGATGTAATGGGGGA 59.652 52.381 0.00 0.00 0.00 4.81
1856 3158 0.606401 CGGTGGTGAATCAAGTGCCT 60.606 55.000 0.00 0.00 0.00 4.75
1894 3196 9.987272 AACAATTGATGAGATATCTTCGTGATA 57.013 29.630 13.59 4.07 41.38 2.15
1895 3197 9.416794 ACAATTGATGAGATATCTTCGTGATAC 57.583 33.333 13.59 0.00 40.12 2.24
1896 3198 8.867935 CAATTGATGAGATATCTTCGTGATACC 58.132 37.037 6.70 0.00 40.12 2.73
1897 3199 7.524717 TTGATGAGATATCTTCGTGATACCA 57.475 36.000 6.70 0.00 40.12 3.25
1898 3200 7.709149 TGATGAGATATCTTCGTGATACCAT 57.291 36.000 6.70 2.23 40.12 3.55
1899 3201 7.766283 TGATGAGATATCTTCGTGATACCATC 58.234 38.462 6.70 11.47 40.12 3.51
1900 3202 7.613411 TGATGAGATATCTTCGTGATACCATCT 59.387 37.037 18.50 15.00 40.12 2.90
1901 3203 9.114952 GATGAGATATCTTCGTGATACCATCTA 57.885 37.037 6.70 7.48 40.12 1.98
1902 3204 8.270080 TGAGATATCTTCGTGATACCATCTAC 57.730 38.462 6.70 0.00 40.12 2.59
1903 3205 8.103935 TGAGATATCTTCGTGATACCATCTACT 58.896 37.037 6.70 0.00 40.12 2.57
1904 3206 8.500753 AGATATCTTCGTGATACCATCTACTC 57.499 38.462 0.00 0.00 40.12 2.59
1905 3207 5.968528 ATCTTCGTGATACCATCTACTCC 57.031 43.478 0.00 0.00 32.79 3.85
1906 3208 4.142790 TCTTCGTGATACCATCTACTCCC 58.857 47.826 0.00 0.00 0.00 4.30
1907 3209 3.878237 TCGTGATACCATCTACTCCCT 57.122 47.619 0.00 0.00 0.00 4.20
1908 3210 3.752665 TCGTGATACCATCTACTCCCTC 58.247 50.000 0.00 0.00 0.00 4.30
1909 3211 2.484651 CGTGATACCATCTACTCCCTCG 59.515 54.545 0.00 0.00 0.00 4.63
1910 3212 2.820787 GTGATACCATCTACTCCCTCGG 59.179 54.545 0.00 0.00 0.00 4.63
1911 3213 2.445905 TGATACCATCTACTCCCTCGGT 59.554 50.000 0.00 0.00 0.00 4.69
1912 3214 2.653234 TACCATCTACTCCCTCGGTC 57.347 55.000 0.00 0.00 0.00 4.79
1913 3215 0.106116 ACCATCTACTCCCTCGGTCC 60.106 60.000 0.00 0.00 0.00 4.46
1914 3216 0.106167 CCATCTACTCCCTCGGTCCA 60.106 60.000 0.00 0.00 0.00 4.02
1915 3217 1.323412 CATCTACTCCCTCGGTCCAG 58.677 60.000 0.00 0.00 0.00 3.86
1916 3218 1.133761 CATCTACTCCCTCGGTCCAGA 60.134 57.143 0.00 0.00 0.00 3.86
1917 3219 0.997363 TCTACTCCCTCGGTCCAGAA 59.003 55.000 0.00 0.00 0.00 3.02
1918 3220 1.569548 TCTACTCCCTCGGTCCAGAAT 59.430 52.381 0.00 0.00 0.00 2.40
1919 3221 2.024273 TCTACTCCCTCGGTCCAGAATT 60.024 50.000 0.00 0.00 0.00 2.17
1920 3222 2.544844 ACTCCCTCGGTCCAGAATTA 57.455 50.000 0.00 0.00 0.00 1.40
1921 3223 2.389715 ACTCCCTCGGTCCAGAATTAG 58.610 52.381 0.00 0.00 0.00 1.73
1922 3224 2.292323 ACTCCCTCGGTCCAGAATTAGT 60.292 50.000 0.00 0.00 0.00 2.24
1923 3225 2.766828 CTCCCTCGGTCCAGAATTAGTT 59.233 50.000 0.00 0.00 0.00 2.24
1924 3226 2.764572 TCCCTCGGTCCAGAATTAGTTC 59.235 50.000 0.00 0.00 34.46 3.01
1925 3227 2.500098 CCCTCGGTCCAGAATTAGTTCA 59.500 50.000 0.44 0.00 36.79 3.18
1926 3228 3.522553 CCTCGGTCCAGAATTAGTTCAC 58.477 50.000 0.44 0.00 36.79 3.18
1927 3229 3.179830 CTCGGTCCAGAATTAGTTCACG 58.820 50.000 0.44 0.00 36.79 4.35
1928 3230 1.659098 CGGTCCAGAATTAGTTCACGC 59.341 52.381 0.44 0.00 36.79 5.34
1929 3231 2.674177 CGGTCCAGAATTAGTTCACGCT 60.674 50.000 0.44 0.00 36.79 5.07
1930 3232 2.930682 GGTCCAGAATTAGTTCACGCTC 59.069 50.000 0.44 0.00 36.79 5.03
1931 3233 3.585862 GTCCAGAATTAGTTCACGCTCA 58.414 45.455 0.44 0.00 36.79 4.26
1932 3234 3.994392 GTCCAGAATTAGTTCACGCTCAA 59.006 43.478 0.44 0.00 36.79 3.02
1933 3235 4.451096 GTCCAGAATTAGTTCACGCTCAAA 59.549 41.667 0.44 0.00 36.79 2.69
1934 3236 4.451096 TCCAGAATTAGTTCACGCTCAAAC 59.549 41.667 0.44 0.00 36.79 2.93
1935 3237 4.213270 CCAGAATTAGTTCACGCTCAAACA 59.787 41.667 0.44 0.00 36.79 2.83
1936 3238 5.277779 CCAGAATTAGTTCACGCTCAAACAA 60.278 40.000 0.44 0.00 36.79 2.83
1937 3239 5.621228 CAGAATTAGTTCACGCTCAAACAAC 59.379 40.000 0.44 0.00 36.79 3.32
1938 3240 3.579147 TTAGTTCACGCTCAAACAACG 57.421 42.857 0.00 0.00 0.00 4.10
1939 3241 1.365699 AGTTCACGCTCAAACAACGT 58.634 45.000 0.00 0.00 41.45 3.99
1940 3242 2.542597 AGTTCACGCTCAAACAACGTA 58.457 42.857 0.00 0.00 38.09 3.57
1941 3243 3.128349 AGTTCACGCTCAAACAACGTAT 58.872 40.909 0.00 0.00 38.09 3.06
1942 3244 3.183775 AGTTCACGCTCAAACAACGTATC 59.816 43.478 0.00 0.00 38.09 2.24
1943 3245 3.021269 TCACGCTCAAACAACGTATCT 57.979 42.857 0.00 0.00 38.09 1.98
1944 3246 4.163458 TCACGCTCAAACAACGTATCTA 57.837 40.909 0.00 0.00 38.09 1.98
1945 3247 4.163552 TCACGCTCAAACAACGTATCTAG 58.836 43.478 0.00 0.00 38.09 2.43
1946 3248 4.083164 TCACGCTCAAACAACGTATCTAGA 60.083 41.667 0.00 0.00 38.09 2.43
1947 3249 4.798907 CACGCTCAAACAACGTATCTAGAT 59.201 41.667 10.73 10.73 38.09 1.98
1948 3250 4.798907 ACGCTCAAACAACGTATCTAGATG 59.201 41.667 15.79 1.97 38.45 2.90
1949 3251 5.034797 CGCTCAAACAACGTATCTAGATGA 58.965 41.667 15.79 1.26 0.00 2.92
1950 3252 5.687730 CGCTCAAACAACGTATCTAGATGAT 59.312 40.000 15.79 0.00 39.11 2.45
1951 3253 6.345329 CGCTCAAACAACGTATCTAGATGATG 60.345 42.308 15.79 10.56 36.65 3.07
1952 3254 6.477033 GCTCAAACAACGTATCTAGATGATGT 59.523 38.462 15.79 11.13 36.65 3.06
1953 3255 7.010552 GCTCAAACAACGTATCTAGATGATGTT 59.989 37.037 15.79 15.66 36.65 2.71
1954 3256 8.185003 TCAAACAACGTATCTAGATGATGTTG 57.815 34.615 27.40 27.40 41.22 3.33
1955 3257 7.817478 TCAAACAACGTATCTAGATGATGTTGT 59.183 33.333 28.24 28.24 45.79 3.32
1959 3261 9.084164 ACAACGTATCTAGATGATGTTGTTTAC 57.916 33.333 28.24 12.69 43.59 2.01
1960 3262 7.909777 ACGTATCTAGATGATGTTGTTTACG 57.090 36.000 15.79 14.22 36.65 3.18
1961 3263 6.916387 ACGTATCTAGATGATGTTGTTTACGG 59.084 38.462 15.79 1.59 33.82 4.02
1962 3264 6.362551 CGTATCTAGATGATGTTGTTTACGGG 59.637 42.308 15.79 0.00 36.65 5.28
1963 3265 5.670792 TCTAGATGATGTTGTTTACGGGT 57.329 39.130 0.00 0.00 0.00 5.28
1964 3266 6.045072 TCTAGATGATGTTGTTTACGGGTT 57.955 37.500 0.00 0.00 0.00 4.11
1965 3267 5.872617 TCTAGATGATGTTGTTTACGGGTTG 59.127 40.000 0.00 0.00 0.00 3.77
1966 3268 3.756434 AGATGATGTTGTTTACGGGTTGG 59.244 43.478 0.00 0.00 0.00 3.77
1967 3269 3.210232 TGATGTTGTTTACGGGTTGGA 57.790 42.857 0.00 0.00 0.00 3.53
1968 3270 3.757270 TGATGTTGTTTACGGGTTGGAT 58.243 40.909 0.00 0.00 0.00 3.41
1969 3271 4.907809 TGATGTTGTTTACGGGTTGGATA 58.092 39.130 0.00 0.00 0.00 2.59
1970 3272 5.502079 TGATGTTGTTTACGGGTTGGATAT 58.498 37.500 0.00 0.00 0.00 1.63
1971 3273 6.651086 TGATGTTGTTTACGGGTTGGATATA 58.349 36.000 0.00 0.00 0.00 0.86
1972 3274 7.284074 TGATGTTGTTTACGGGTTGGATATAT 58.716 34.615 0.00 0.00 0.00 0.86
1973 3275 7.776030 TGATGTTGTTTACGGGTTGGATATATT 59.224 33.333 0.00 0.00 0.00 1.28
1974 3276 7.941431 TGTTGTTTACGGGTTGGATATATTT 57.059 32.000 0.00 0.00 0.00 1.40
1975 3277 8.350852 TGTTGTTTACGGGTTGGATATATTTT 57.649 30.769 0.00 0.00 0.00 1.82
1976 3278 9.458727 TGTTGTTTACGGGTTGGATATATTTTA 57.541 29.630 0.00 0.00 0.00 1.52
1977 3279 9.940166 GTTGTTTACGGGTTGGATATATTTTAG 57.060 33.333 0.00 0.00 0.00 1.85
1978 3280 8.156994 TGTTTACGGGTTGGATATATTTTAGC 57.843 34.615 0.00 0.00 0.00 3.09
1979 3281 7.774157 TGTTTACGGGTTGGATATATTTTAGCA 59.226 33.333 0.00 0.00 0.00 3.49
1980 3282 7.972832 TTACGGGTTGGATATATTTTAGCAG 57.027 36.000 0.00 0.00 0.00 4.24
1981 3283 4.760204 ACGGGTTGGATATATTTTAGCAGC 59.240 41.667 0.00 0.00 0.00 5.25
1982 3284 5.003804 CGGGTTGGATATATTTTAGCAGCT 58.996 41.667 0.00 0.00 0.00 4.24
1983 3285 5.122396 CGGGTTGGATATATTTTAGCAGCTC 59.878 44.000 0.00 0.00 0.00 4.09
1984 3286 6.241645 GGGTTGGATATATTTTAGCAGCTCT 58.758 40.000 0.00 0.00 0.00 4.09
1985 3287 7.394816 GGGTTGGATATATTTTAGCAGCTCTA 58.605 38.462 0.00 0.00 0.00 2.43
1986 3288 7.334671 GGGTTGGATATATTTTAGCAGCTCTAC 59.665 40.741 0.00 0.00 0.00 2.59
1987 3289 8.097662 GGTTGGATATATTTTAGCAGCTCTACT 58.902 37.037 0.00 0.00 0.00 2.57
1988 3290 9.495572 GTTGGATATATTTTAGCAGCTCTACTT 57.504 33.333 0.00 0.00 0.00 2.24
1991 3293 9.589111 GGATATATTTTAGCAGCTCTACTTACC 57.411 37.037 0.00 0.00 0.00 2.85
1992 3294 9.589111 GATATATTTTAGCAGCTCTACTTACCC 57.411 37.037 0.00 0.00 0.00 3.69
1993 3295 3.795623 TTTAGCAGCTCTACTTACCCG 57.204 47.619 0.00 0.00 0.00 5.28
1994 3296 1.030457 TAGCAGCTCTACTTACCCGC 58.970 55.000 0.00 0.00 0.00 6.13
1995 3297 0.970937 AGCAGCTCTACTTACCCGCA 60.971 55.000 0.00 0.00 0.00 5.69
1996 3298 0.105039 GCAGCTCTACTTACCCGCAT 59.895 55.000 0.00 0.00 0.00 4.73
1997 3299 1.870167 GCAGCTCTACTTACCCGCATC 60.870 57.143 0.00 0.00 0.00 3.91
1998 3300 0.669077 AGCTCTACTTACCCGCATCG 59.331 55.000 0.00 0.00 0.00 3.84
2018 3320 3.022607 GGGTACCGTCATCTTATTCGG 57.977 52.381 5.65 0.00 46.98 4.30
2025 3327 4.435425 CCGTCATCTTATTCGGTTAACCA 58.565 43.478 24.14 6.28 38.45 3.67
2026 3328 4.871557 CCGTCATCTTATTCGGTTAACCAA 59.128 41.667 24.14 16.63 38.45 3.67
2027 3329 5.526111 CCGTCATCTTATTCGGTTAACCAAT 59.474 40.000 24.14 21.35 38.45 3.16
2028 3330 6.418956 CGTCATCTTATTCGGTTAACCAATG 58.581 40.000 24.14 13.79 35.14 2.82
2029 3331 6.511121 CGTCATCTTATTCGGTTAACCAATGG 60.511 42.308 24.14 16.68 35.14 3.16
2030 3332 5.825679 TCATCTTATTCGGTTAACCAATGGG 59.174 40.000 24.14 16.42 41.29 4.00
2040 3342 3.770589 CCAATGGGTTTCGCCACA 58.229 55.556 0.00 0.00 39.65 4.17
2041 3343 2.045280 CCAATGGGTTTCGCCACAA 58.955 52.632 0.00 0.00 39.65 3.33
2042 3344 0.038343 CCAATGGGTTTCGCCACAAG 60.038 55.000 0.00 0.00 39.65 3.16
2043 3345 0.038343 CAATGGGTTTCGCCACAAGG 60.038 55.000 0.00 0.00 39.65 3.61
2044 3346 0.178975 AATGGGTTTCGCCACAAGGA 60.179 50.000 0.00 0.00 39.65 3.36
2045 3347 0.039618 ATGGGTTTCGCCACAAGGAT 59.960 50.000 0.00 0.00 39.65 3.24
2046 3348 0.693622 TGGGTTTCGCCACAAGGATA 59.306 50.000 0.00 0.00 39.65 2.59
2047 3349 1.283613 TGGGTTTCGCCACAAGGATAT 59.716 47.619 0.00 0.00 39.65 1.63
2048 3350 2.291282 TGGGTTTCGCCACAAGGATATT 60.291 45.455 0.00 0.00 39.65 1.28
2049 3351 2.758423 GGGTTTCGCCACAAGGATATTT 59.242 45.455 0.00 0.00 39.65 1.40
2050 3352 3.949113 GGGTTTCGCCACAAGGATATTTA 59.051 43.478 0.00 0.00 39.65 1.40
2051 3353 4.583073 GGGTTTCGCCACAAGGATATTTAT 59.417 41.667 0.00 0.00 39.65 1.40
2052 3354 5.278315 GGGTTTCGCCACAAGGATATTTATC 60.278 44.000 0.00 0.00 39.65 1.75
2053 3355 5.278315 GGTTTCGCCACAAGGATATTTATCC 60.278 44.000 8.33 8.33 43.73 2.59
2054 3356 8.176385 GGTTTCGCCACAAGGATATTTATCCC 62.176 46.154 12.09 0.00 44.09 3.85
2067 3369 8.593945 GGATATTTATCCCCATGCTTGATAAA 57.406 34.615 17.44 17.44 45.20 1.40
2068 3370 9.034800 GGATATTTATCCCCATGCTTGATAAAA 57.965 33.333 18.34 12.16 45.20 1.52
2071 3373 7.732222 TTTATCCCCATGCTTGATAAAAACT 57.268 32.000 14.80 0.00 37.77 2.66
2072 3374 5.859205 ATCCCCATGCTTGATAAAAACTC 57.141 39.130 0.22 0.00 0.00 3.01
2073 3375 3.694072 TCCCCATGCTTGATAAAAACTCG 59.306 43.478 0.22 0.00 0.00 4.18
2074 3376 3.438360 CCCATGCTTGATAAAAACTCGC 58.562 45.455 0.22 0.00 0.00 5.03
2075 3377 3.129287 CCCATGCTTGATAAAAACTCGCT 59.871 43.478 0.22 0.00 0.00 4.93
2076 3378 4.346129 CCATGCTTGATAAAAACTCGCTC 58.654 43.478 0.22 0.00 0.00 5.03
2077 3379 4.142622 CCATGCTTGATAAAAACTCGCTCA 60.143 41.667 0.22 0.00 0.00 4.26
2078 3380 4.404507 TGCTTGATAAAAACTCGCTCAC 57.595 40.909 0.00 0.00 0.00 3.51
2079 3381 4.065088 TGCTTGATAAAAACTCGCTCACT 58.935 39.130 0.00 0.00 0.00 3.41
2080 3382 4.152402 TGCTTGATAAAAACTCGCTCACTC 59.848 41.667 0.00 0.00 0.00 3.51
2081 3383 4.722346 GCTTGATAAAAACTCGCTCACTCG 60.722 45.833 0.00 0.00 0.00 4.18
2082 3384 2.666508 TGATAAAAACTCGCTCACTCGC 59.333 45.455 0.00 0.00 0.00 5.03
2083 3385 2.433868 TAAAAACTCGCTCACTCGCT 57.566 45.000 0.00 0.00 0.00 4.93
2084 3386 1.140816 AAAAACTCGCTCACTCGCTC 58.859 50.000 0.00 0.00 0.00 5.03
2085 3387 0.032130 AAAACTCGCTCACTCGCTCA 59.968 50.000 0.00 0.00 0.00 4.26
2086 3388 0.387878 AAACTCGCTCACTCGCTCAG 60.388 55.000 0.00 0.00 0.00 3.35
2087 3389 2.101965 CTCGCTCACTCGCTCAGG 59.898 66.667 0.00 0.00 0.00 3.86
2088 3390 4.121669 TCGCTCACTCGCTCAGGC 62.122 66.667 0.00 0.00 0.00 4.85
2089 3391 4.426112 CGCTCACTCGCTCAGGCA 62.426 66.667 0.00 0.00 38.60 4.75
2090 3392 2.186384 GCTCACTCGCTCAGGCAT 59.814 61.111 0.00 0.00 38.60 4.40
2091 3393 1.449246 GCTCACTCGCTCAGGCATT 60.449 57.895 0.00 0.00 38.60 3.56
2092 3394 1.703438 GCTCACTCGCTCAGGCATTG 61.703 60.000 0.00 0.00 38.60 2.82
2093 3395 1.703438 CTCACTCGCTCAGGCATTGC 61.703 60.000 0.00 0.00 38.60 3.56
2098 3400 4.137879 GCTCAGGCATTGCGATCT 57.862 55.556 1.91 0.00 38.54 2.75
2099 3401 1.940334 GCTCAGGCATTGCGATCTC 59.060 57.895 1.91 0.00 38.54 2.75
2100 3402 0.812811 GCTCAGGCATTGCGATCTCA 60.813 55.000 1.91 0.00 38.54 3.27
2101 3403 1.880271 CTCAGGCATTGCGATCTCAT 58.120 50.000 1.91 0.00 0.00 2.90
2102 3404 2.869237 GCTCAGGCATTGCGATCTCATA 60.869 50.000 1.91 0.00 38.54 2.15
2103 3405 3.396560 CTCAGGCATTGCGATCTCATAA 58.603 45.455 1.91 0.00 0.00 1.90
2104 3406 3.807553 TCAGGCATTGCGATCTCATAAA 58.192 40.909 1.91 0.00 0.00 1.40
2105 3407 4.392047 TCAGGCATTGCGATCTCATAAAT 58.608 39.130 1.91 0.00 0.00 1.40
2106 3408 4.823442 TCAGGCATTGCGATCTCATAAATT 59.177 37.500 1.91 0.00 0.00 1.82
2107 3409 5.997129 TCAGGCATTGCGATCTCATAAATTA 59.003 36.000 1.91 0.00 0.00 1.40
2108 3410 6.073058 TCAGGCATTGCGATCTCATAAATTAC 60.073 38.462 1.91 0.00 0.00 1.89
2109 3411 5.082059 GGCATTGCGATCTCATAAATTACG 58.918 41.667 1.91 0.00 0.00 3.18
2110 3412 5.082059 GCATTGCGATCTCATAAATTACGG 58.918 41.667 0.00 0.00 0.00 4.02
2111 3413 5.334105 GCATTGCGATCTCATAAATTACGGT 60.334 40.000 0.00 0.00 0.00 4.83
2112 3414 6.658831 CATTGCGATCTCATAAATTACGGTT 58.341 36.000 0.00 0.00 0.00 4.44
2113 3415 5.651172 TGCGATCTCATAAATTACGGTTG 57.349 39.130 0.00 0.00 0.00 3.77
2114 3416 5.113383 TGCGATCTCATAAATTACGGTTGT 58.887 37.500 0.00 0.00 0.00 3.32
2115 3417 6.274579 TGCGATCTCATAAATTACGGTTGTA 58.725 36.000 0.00 0.00 0.00 2.41
2116 3418 6.926826 TGCGATCTCATAAATTACGGTTGTAT 59.073 34.615 0.00 0.00 0.00 2.29
2117 3419 7.095816 TGCGATCTCATAAATTACGGTTGTATG 60.096 37.037 0.00 0.00 0.00 2.39
2118 3420 7.115805 GCGATCTCATAAATTACGGTTGTATGA 59.884 37.037 0.00 0.00 31.95 2.15
2119 3421 8.974408 CGATCTCATAAATTACGGTTGTATGAA 58.026 33.333 0.00 0.00 32.36 2.57
2170 3472 5.063204 TGAGTGACCAAACTAATTGACCAG 58.937 41.667 0.00 0.00 41.85 4.00
2171 3473 5.048846 AGTGACCAAACTAATTGACCAGT 57.951 39.130 0.00 0.00 41.85 4.00
2178 3480 6.109359 CCAAACTAATTGACCAGTCTCCTAG 58.891 44.000 0.00 0.44 41.85 3.02
2195 3497 0.254747 TAGGCCGGTTTCCAAGATGG 59.745 55.000 1.90 0.00 39.43 3.51
2236 3538 2.358125 CCAATGTGTCGACCGGCA 60.358 61.111 14.12 9.93 0.00 5.69
2249 3551 1.452108 CCGGCAATGAGAAGACCCC 60.452 63.158 0.00 0.00 0.00 4.95
2258 3560 0.321653 GAGAAGACCCCGCACAATGT 60.322 55.000 0.00 0.00 0.00 2.71
2279 3581 5.502079 TGTACCGGTTGAATTATTGATGGT 58.498 37.500 15.04 0.00 0.00 3.55
2294 3596 0.032813 ATGGTCTTTGGCCCCATGAG 60.033 55.000 9.46 0.00 37.58 2.90
2326 3628 6.713762 TTTCTGAAAAATCTTGAAGGCTCA 57.286 33.333 0.00 0.00 0.00 4.26
2355 3657 4.020307 TGGTGTCTGTGAAATAGCATCTCA 60.020 41.667 0.00 0.00 0.00 3.27
2370 3672 0.405198 TCTCAGAGGCCCATTTTGCA 59.595 50.000 0.00 0.00 0.00 4.08
2416 3718 1.554822 CCCACCCTAGGAGTGAAGGAA 60.555 57.143 24.15 0.00 37.42 3.36
2480 3782 2.235898 GGAGCATGAGAAGAGAAGTGGT 59.764 50.000 0.00 0.00 0.00 4.16
2487 3789 4.649692 TGAGAAGAGAAGTGGTACGTACT 58.350 43.478 24.07 4.53 0.00 2.73
2490 3792 6.883217 TGAGAAGAGAAGTGGTACGTACTTAT 59.117 38.462 24.07 10.89 38.42 1.73
2514 3819 3.075005 GTCTCCCGCCTAGCCACA 61.075 66.667 0.00 0.00 0.00 4.17
2535 3840 2.047274 CCGGGCGTGTCATGTCTT 60.047 61.111 0.00 0.00 0.00 3.01
2584 3889 2.161211 GCTTGCAACTGTCATTCCTCTC 59.839 50.000 0.00 0.00 0.00 3.20
2617 3922 2.414994 ACGACTACTCCATCTCGGAA 57.585 50.000 0.00 0.00 45.75 4.30
2629 3934 3.392228 TCGGAAGAGCAGGCATGT 58.608 55.556 0.00 0.00 34.84 3.21
2633 3938 0.747283 GGAAGAGCAGGCATGTGGAG 60.747 60.000 0.00 0.00 0.00 3.86
2641 3946 1.452833 GGCATGTGGAGAGAAGGGC 60.453 63.158 0.00 0.00 0.00 5.19
2651 3956 4.591072 GTGGAGAGAAGGGCTATACATTCT 59.409 45.833 0.00 0.00 29.91 2.40
2652 3957 5.071115 GTGGAGAGAAGGGCTATACATTCTT 59.929 44.000 0.00 0.00 29.91 2.52
2654 3959 5.994668 GGAGAGAAGGGCTATACATTCTTTG 59.005 44.000 0.00 0.00 32.31 2.77
2655 3960 5.934781 AGAGAAGGGCTATACATTCTTTGG 58.065 41.667 0.00 0.00 32.31 3.28
2656 3961 5.053978 AGAAGGGCTATACATTCTTTGGG 57.946 43.478 0.00 0.00 0.00 4.12
2657 3962 3.884037 AGGGCTATACATTCTTTGGGG 57.116 47.619 0.00 0.00 0.00 4.96
2658 3963 3.403322 AGGGCTATACATTCTTTGGGGA 58.597 45.455 0.00 0.00 0.00 4.81
2659 3964 3.395941 AGGGCTATACATTCTTTGGGGAG 59.604 47.826 0.00 0.00 0.00 4.30
2660 3965 3.149981 GGCTATACATTCTTTGGGGAGC 58.850 50.000 0.00 0.00 0.00 4.70
2661 3966 3.435026 GGCTATACATTCTTTGGGGAGCA 60.435 47.826 0.00 0.00 32.06 4.26
2662 3967 4.401925 GCTATACATTCTTTGGGGAGCAT 58.598 43.478 0.00 0.00 31.27 3.79
2663 3968 4.457257 GCTATACATTCTTTGGGGAGCATC 59.543 45.833 0.00 0.00 31.27 3.91
2664 3969 4.803329 ATACATTCTTTGGGGAGCATCT 57.197 40.909 0.00 0.00 33.73 2.90
2665 3970 3.010200 ACATTCTTTGGGGAGCATCTC 57.990 47.619 0.00 0.00 33.73 2.75
2666 3971 2.309755 ACATTCTTTGGGGAGCATCTCA 59.690 45.455 0.00 0.00 37.29 3.27
2667 3972 3.245371 ACATTCTTTGGGGAGCATCTCAA 60.245 43.478 0.00 0.00 37.29 3.02
2668 3973 2.496899 TCTTTGGGGAGCATCTCAAC 57.503 50.000 0.00 0.00 37.29 3.18
2684 3989 1.134521 TCAACGAGGTTGTGTGCTTCT 60.135 47.619 8.21 0.00 43.23 2.85
2688 3993 1.230324 GAGGTTGTGTGCTTCTGTCC 58.770 55.000 0.00 0.00 0.00 4.02
2700 4005 2.735762 GCTTCTGTCCGTCTACATCCAC 60.736 54.545 0.00 0.00 0.00 4.02
2708 4013 3.930229 TCCGTCTACATCCACGATTTTTG 59.070 43.478 0.00 0.00 38.32 2.44
2737 4042 3.055891 TCACTGATCACGTCATGGTTGAT 60.056 43.478 0.00 0.00 35.97 2.57
2750 4055 3.483808 TGGTTGATATTAGCGATGCCA 57.516 42.857 0.00 0.00 0.00 4.92
2763 4068 1.402613 CGATGCCATGAAGAATGCACA 59.597 47.619 0.00 0.00 34.67 4.57
2774 4079 0.110509 GAATGCACACGTCACTGCAG 60.111 55.000 13.48 13.48 46.26 4.41
2784 4089 1.071987 TCACTGCAGCCCTCACTTG 59.928 57.895 15.27 1.53 0.00 3.16
2785 4090 1.071987 CACTGCAGCCCTCACTTGA 59.928 57.895 15.27 0.00 0.00 3.02
2786 4091 1.072159 ACTGCAGCCCTCACTTGAC 59.928 57.895 15.27 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 4.694982 TCATCTAAGTCGTTACACCGTGTA 59.305 41.667 7.32 7.32 0.00 2.90
126 128 3.308117 CCAATAGTGCACCCTTTACTCCA 60.308 47.826 14.63 0.00 0.00 3.86
135 137 3.258123 ACAAATTGTCCAATAGTGCACCC 59.742 43.478 14.63 0.00 0.00 4.61
140 142 5.686841 CACACACACAAATTGTCCAATAGTG 59.313 40.000 17.14 17.14 40.12 2.74
144 147 4.081752 ACACACACACACAAATTGTCCAAT 60.082 37.500 0.00 0.00 35.67 3.16
156 159 0.167908 CCACACACACACACACACAC 59.832 55.000 0.00 0.00 0.00 3.82
163 166 4.133820 CCTTCTTTATCCACACACACACA 58.866 43.478 0.00 0.00 0.00 3.72
164 167 3.058224 GCCTTCTTTATCCACACACACAC 60.058 47.826 0.00 0.00 0.00 3.82
165 168 3.146066 GCCTTCTTTATCCACACACACA 58.854 45.455 0.00 0.00 0.00 3.72
166 169 3.146066 TGCCTTCTTTATCCACACACAC 58.854 45.455 0.00 0.00 0.00 3.82
182 187 0.899717 ATTGCGGTGGACATTGCCTT 60.900 50.000 0.00 0.00 0.00 4.35
304 309 7.012044 GTCCAATCACTGTAAAACTTGTACACT 59.988 37.037 0.00 0.00 0.00 3.55
308 313 8.514330 AAAGTCCAATCACTGTAAAACTTGTA 57.486 30.769 0.00 0.00 0.00 2.41
309 314 7.404671 AAAGTCCAATCACTGTAAAACTTGT 57.595 32.000 0.00 0.00 0.00 3.16
310 315 8.190784 AGAAAAGTCCAATCACTGTAAAACTTG 58.809 33.333 0.00 0.00 0.00 3.16
311 316 8.293699 AGAAAAGTCCAATCACTGTAAAACTT 57.706 30.769 0.00 0.00 0.00 2.66
314 319 8.287439 TCAAGAAAAGTCCAATCACTGTAAAA 57.713 30.769 0.00 0.00 0.00 1.52
315 320 7.468631 GCTCAAGAAAAGTCCAATCACTGTAAA 60.469 37.037 0.00 0.00 0.00 2.01
316 321 6.017109 GCTCAAGAAAAGTCCAATCACTGTAA 60.017 38.462 0.00 0.00 0.00 2.41
317 322 5.470098 GCTCAAGAAAAGTCCAATCACTGTA 59.530 40.000 0.00 0.00 0.00 2.74
318 323 4.276926 GCTCAAGAAAAGTCCAATCACTGT 59.723 41.667 0.00 0.00 0.00 3.55
319 324 4.320788 GGCTCAAGAAAAGTCCAATCACTG 60.321 45.833 0.00 0.00 0.00 3.66
322 327 2.813754 CGGCTCAAGAAAAGTCCAATCA 59.186 45.455 0.00 0.00 0.00 2.57
323 328 2.814336 ACGGCTCAAGAAAAGTCCAATC 59.186 45.455 0.00 0.00 0.00 2.67
327 332 1.194772 CGAACGGCTCAAGAAAAGTCC 59.805 52.381 0.00 0.00 0.00 3.85
329 334 0.586802 GCGAACGGCTCAAGAAAAGT 59.413 50.000 0.00 0.00 39.11 2.66
330 335 0.586319 TGCGAACGGCTCAAGAAAAG 59.414 50.000 0.00 0.00 44.05 2.27
332 337 1.827315 CGTGCGAACGGCTCAAGAAA 61.827 55.000 8.46 0.00 44.05 2.52
346 351 5.121071 TGTATTTAGAAAATCGACGTGCG 57.879 39.130 0.00 0.00 42.69 5.34
410 1645 2.031508 TCGGTCTTCGTTTGGCATTTTC 60.032 45.455 0.00 0.00 40.32 2.29
412 1647 1.535462 CTCGGTCTTCGTTTGGCATTT 59.465 47.619 0.00 0.00 40.32 2.32
413 1648 1.156736 CTCGGTCTTCGTTTGGCATT 58.843 50.000 0.00 0.00 40.32 3.56
414 1649 1.298859 GCTCGGTCTTCGTTTGGCAT 61.299 55.000 0.00 0.00 40.32 4.40
415 1650 1.959226 GCTCGGTCTTCGTTTGGCA 60.959 57.895 0.00 0.00 40.32 4.92
416 1651 1.627550 GAGCTCGGTCTTCGTTTGGC 61.628 60.000 0.00 0.00 40.32 4.52
417 1652 1.014564 GGAGCTCGGTCTTCGTTTGG 61.015 60.000 7.83 0.00 40.32 3.28
418 1653 0.319555 TGGAGCTCGGTCTTCGTTTG 60.320 55.000 7.83 0.00 40.32 2.93
419 1654 0.608640 ATGGAGCTCGGTCTTCGTTT 59.391 50.000 7.83 0.00 40.32 3.60
420 1655 0.108615 CATGGAGCTCGGTCTTCGTT 60.109 55.000 7.83 0.00 40.32 3.85
421 1656 0.965866 TCATGGAGCTCGGTCTTCGT 60.966 55.000 7.83 0.00 40.32 3.85
422 1657 0.173481 TTCATGGAGCTCGGTCTTCG 59.827 55.000 7.83 0.00 40.90 3.79
423 1658 1.472376 CCTTCATGGAGCTCGGTCTTC 60.472 57.143 7.83 0.00 38.35 2.87
424 1659 0.539051 CCTTCATGGAGCTCGGTCTT 59.461 55.000 7.83 0.00 38.35 3.01
425 1660 1.965754 GCCTTCATGGAGCTCGGTCT 61.966 60.000 7.83 0.00 38.35 3.85
426 1661 1.522580 GCCTTCATGGAGCTCGGTC 60.523 63.158 7.83 0.00 38.35 4.79
427 1662 2.586792 GCCTTCATGGAGCTCGGT 59.413 61.111 7.83 0.00 38.35 4.69
428 1663 2.203126 GGCCTTCATGGAGCTCGG 60.203 66.667 7.83 2.99 38.35 4.63
429 1664 0.393537 AAAGGCCTTCATGGAGCTCG 60.394 55.000 20.79 0.00 38.35 5.03
430 1665 2.717639 TAAAGGCCTTCATGGAGCTC 57.282 50.000 20.79 4.71 38.35 4.09
431 1666 3.677156 AATAAAGGCCTTCATGGAGCT 57.323 42.857 20.79 2.41 38.35 4.09
432 1667 5.852282 TTAAATAAAGGCCTTCATGGAGC 57.148 39.130 20.79 0.00 38.35 4.70
433 1668 8.314021 AGTTTTTAAATAAAGGCCTTCATGGAG 58.686 33.333 20.79 0.00 38.35 3.86
434 1669 8.201242 AGTTTTTAAATAAAGGCCTTCATGGA 57.799 30.769 20.79 1.48 38.35 3.41
435 1670 8.846943 AAGTTTTTAAATAAAGGCCTTCATGG 57.153 30.769 20.79 0.00 39.35 3.66
436 1671 9.487790 TGAAGTTTTTAAATAAAGGCCTTCATG 57.512 29.630 20.79 0.00 34.22 3.07
438 1673 9.892130 TTTGAAGTTTTTAAATAAAGGCCTTCA 57.108 25.926 20.79 3.87 35.57 3.02
512 1747 9.809096 GCACACATGTATATTATGTATCTAGCT 57.191 33.333 0.00 0.00 36.67 3.32
513 1748 9.586435 TGCACACATGTATATTATGTATCTAGC 57.414 33.333 0.00 6.45 36.67 3.42
525 1760 9.801873 GACCTAAAAATTTGCACACATGTATAT 57.198 29.630 0.00 0.00 0.00 0.86
526 1761 7.965655 CGACCTAAAAATTTGCACACATGTATA 59.034 33.333 0.00 0.00 0.00 1.47
527 1762 6.806249 CGACCTAAAAATTTGCACACATGTAT 59.194 34.615 0.00 0.00 0.00 2.29
528 1763 6.017026 TCGACCTAAAAATTTGCACACATGTA 60.017 34.615 0.00 0.00 0.00 2.29
529 1764 4.981674 CGACCTAAAAATTTGCACACATGT 59.018 37.500 0.00 0.00 0.00 3.21
530 1765 5.218885 TCGACCTAAAAATTTGCACACATG 58.781 37.500 0.00 0.00 0.00 3.21
531 1766 5.446143 TCGACCTAAAAATTTGCACACAT 57.554 34.783 0.00 0.00 0.00 3.21
532 1767 4.902443 TCGACCTAAAAATTTGCACACA 57.098 36.364 0.00 0.00 0.00 3.72
533 1768 6.763303 ATTTCGACCTAAAAATTTGCACAC 57.237 33.333 0.00 0.00 0.00 3.82
534 1769 7.426410 TGTATTTCGACCTAAAAATTTGCACA 58.574 30.769 0.00 0.00 0.00 4.57
535 1770 7.861176 TGTATTTCGACCTAAAAATTTGCAC 57.139 32.000 0.00 0.00 0.00 4.57
546 1781 8.609176 GCTCACATTTTATTGTATTTCGACCTA 58.391 33.333 0.00 0.00 0.00 3.08
547 1782 7.336931 AGCTCACATTTTATTGTATTTCGACCT 59.663 33.333 0.00 0.00 0.00 3.85
548 1783 7.472543 AGCTCACATTTTATTGTATTTCGACC 58.527 34.615 0.00 0.00 0.00 4.79
549 1784 9.422196 GTAGCTCACATTTTATTGTATTTCGAC 57.578 33.333 0.00 0.00 0.00 4.20
550 1785 9.157104 TGTAGCTCACATTTTATTGTATTTCGA 57.843 29.630 0.00 0.00 30.04 3.71
551 1786 9.210426 GTGTAGCTCACATTTTATTGTATTTCG 57.790 33.333 10.30 0.00 45.51 3.46
588 1823 9.561069 CAGTACATATACTAAAAAGCCCAGATT 57.439 33.333 0.00 0.00 39.80 2.40
589 1824 8.714906 ACAGTACATATACTAAAAAGCCCAGAT 58.285 33.333 0.00 0.00 39.80 2.90
590 1825 8.086143 ACAGTACATATACTAAAAAGCCCAGA 57.914 34.615 0.00 0.00 39.80 3.86
591 1826 8.732746 AACAGTACATATACTAAAAAGCCCAG 57.267 34.615 0.00 0.00 39.80 4.45
592 1827 8.322828 TGAACAGTACATATACTAAAAAGCCCA 58.677 33.333 0.00 0.00 39.80 5.36
593 1828 8.726870 TGAACAGTACATATACTAAAAAGCCC 57.273 34.615 0.00 0.00 39.80 5.19
607 1842 8.950210 CATGGACTTTAAAGATGAACAGTACAT 58.050 33.333 21.92 6.87 36.43 2.29
608 1843 8.154203 TCATGGACTTTAAAGATGAACAGTACA 58.846 33.333 21.92 4.66 29.71 2.90
609 1844 8.547967 TCATGGACTTTAAAGATGAACAGTAC 57.452 34.615 21.92 0.00 0.00 2.73
610 1845 9.739276 AATCATGGACTTTAAAGATGAACAGTA 57.261 29.630 21.92 5.83 0.00 2.74
611 1846 8.641498 AATCATGGACTTTAAAGATGAACAGT 57.359 30.769 21.92 3.41 0.00 3.55
612 1847 9.918630 AAAATCATGGACTTTAAAGATGAACAG 57.081 29.630 21.92 5.57 0.00 3.16
613 1848 9.695526 CAAAATCATGGACTTTAAAGATGAACA 57.304 29.630 21.92 12.00 0.00 3.18
614 1849 8.650714 GCAAAATCATGGACTTTAAAGATGAAC 58.349 33.333 21.92 7.20 0.00 3.18
615 1850 8.587608 AGCAAAATCATGGACTTTAAAGATGAA 58.412 29.630 21.92 4.87 0.00 2.57
616 1851 8.125978 AGCAAAATCATGGACTTTAAAGATGA 57.874 30.769 21.92 18.57 0.00 2.92
617 1852 8.767478 AAGCAAAATCATGGACTTTAAAGATG 57.233 30.769 21.92 14.25 0.00 2.90
618 1853 9.783081 AAAAGCAAAATCATGGACTTTAAAGAT 57.217 25.926 21.92 6.14 0.00 2.40
619 1854 9.612066 AAAAAGCAAAATCATGGACTTTAAAGA 57.388 25.926 21.92 0.00 0.00 2.52
649 1884 7.605512 GAAATACCTTCAATTGCGAGCTGCA 62.606 44.000 1.02 6.72 42.28 4.41
650 1885 1.086696 TACCTTCAATTGCGAGCTGC 58.913 50.000 0.00 0.00 46.70 5.25
651 1886 4.142622 TGAAATACCTTCAATTGCGAGCTG 60.143 41.667 0.00 0.00 41.21 4.24
652 1887 4.009675 TGAAATACCTTCAATTGCGAGCT 58.990 39.130 0.00 0.00 41.21 4.09
653 1888 4.355543 TGAAATACCTTCAATTGCGAGC 57.644 40.909 0.00 0.00 41.21 5.03
654 1889 8.803579 TCAGGATGAAATACCTTCAATTGCGAG 61.804 40.741 0.00 1.18 45.97 5.03
655 1890 7.078666 TCAGGATGAAATACCTTCAATTGCGA 61.079 38.462 0.00 0.00 45.97 5.10
656 1891 5.066375 TCAGGATGAAATACCTTCAATTGCG 59.934 40.000 0.00 0.00 45.97 4.85
657 1892 6.455360 TCAGGATGAAATACCTTCAATTGC 57.545 37.500 0.00 0.00 45.97 3.56
672 1907 8.081633 GTGTATGTGTGAAAAATTTCAGGATGA 58.918 33.333 8.76 0.00 46.80 2.92
673 1908 8.084073 AGTGTATGTGTGAAAAATTTCAGGATG 58.916 33.333 8.76 0.00 46.80 3.51
674 1909 8.181904 AGTGTATGTGTGAAAAATTTCAGGAT 57.818 30.769 8.76 4.68 46.80 3.24
675 1910 7.581213 AGTGTATGTGTGAAAAATTTCAGGA 57.419 32.000 8.76 0.00 46.80 3.86
676 1911 8.647143 AAAGTGTATGTGTGAAAAATTTCAGG 57.353 30.769 8.76 0.00 46.80 3.86
681 1916 9.691362 GGATGTAAAGTGTATGTGTGAAAAATT 57.309 29.630 0.00 0.00 0.00 1.82
682 1917 9.077885 AGGATGTAAAGTGTATGTGTGAAAAAT 57.922 29.630 0.00 0.00 0.00 1.82
683 1918 8.458573 AGGATGTAAAGTGTATGTGTGAAAAA 57.541 30.769 0.00 0.00 0.00 1.94
684 1919 8.349245 CAAGGATGTAAAGTGTATGTGTGAAAA 58.651 33.333 0.00 0.00 0.00 2.29
685 1920 7.521423 GCAAGGATGTAAAGTGTATGTGTGAAA 60.521 37.037 0.00 0.00 0.00 2.69
686 1921 6.072728 GCAAGGATGTAAAGTGTATGTGTGAA 60.073 38.462 0.00 0.00 0.00 3.18
687 1922 5.411361 GCAAGGATGTAAAGTGTATGTGTGA 59.589 40.000 0.00 0.00 0.00 3.58
688 1923 5.181056 TGCAAGGATGTAAAGTGTATGTGTG 59.819 40.000 0.00 0.00 0.00 3.82
689 1924 5.312895 TGCAAGGATGTAAAGTGTATGTGT 58.687 37.500 0.00 0.00 0.00 3.72
690 1925 5.878332 TGCAAGGATGTAAAGTGTATGTG 57.122 39.130 0.00 0.00 0.00 3.21
691 1926 7.109501 TGTATGCAAGGATGTAAAGTGTATGT 58.890 34.615 0.00 0.00 0.00 2.29
692 1927 7.552458 TGTATGCAAGGATGTAAAGTGTATG 57.448 36.000 0.00 0.00 0.00 2.39
693 1928 7.775093 ACATGTATGCAAGGATGTAAAGTGTAT 59.225 33.333 0.00 0.00 0.00 2.29
694 1929 7.065683 CACATGTATGCAAGGATGTAAAGTGTA 59.934 37.037 0.00 0.00 0.00 2.90
695 1930 5.945784 ACATGTATGCAAGGATGTAAAGTGT 59.054 36.000 0.00 0.00 0.00 3.55
696 1931 6.127925 ACACATGTATGCAAGGATGTAAAGTG 60.128 38.462 0.00 0.00 0.00 3.16
697 1932 5.945784 ACACATGTATGCAAGGATGTAAAGT 59.054 36.000 0.00 1.15 0.00 2.66
698 1933 6.441093 ACACATGTATGCAAGGATGTAAAG 57.559 37.500 0.00 0.66 0.00 1.85
699 1934 7.929941 TTACACATGTATGCAAGGATGTAAA 57.070 32.000 0.00 3.99 30.53 2.01
700 1935 8.518430 AATTACACATGTATGCAAGGATGTAA 57.482 30.769 0.00 11.55 36.16 2.41
701 1936 8.518430 AAATTACACATGTATGCAAGGATGTA 57.482 30.769 0.00 2.28 0.00 2.29
702 1937 7.408756 AAATTACACATGTATGCAAGGATGT 57.591 32.000 0.00 0.00 0.00 3.06
703 1938 8.706492 AAAAATTACACATGTATGCAAGGATG 57.294 30.769 0.00 0.00 0.00 3.51
737 1972 9.057089 ACCATGCATAAATTTCGGTTTTAAAAA 57.943 25.926 0.00 0.00 0.00 1.94
738 1973 8.608844 ACCATGCATAAATTTCGGTTTTAAAA 57.391 26.923 0.00 0.00 0.00 1.52
739 1974 8.499162 CAACCATGCATAAATTTCGGTTTTAAA 58.501 29.630 11.52 0.00 33.09 1.52
740 1975 7.118390 CCAACCATGCATAAATTTCGGTTTTAA 59.882 33.333 11.52 0.00 33.09 1.52
741 1976 6.591834 CCAACCATGCATAAATTTCGGTTTTA 59.408 34.615 11.52 0.00 33.09 1.52
742 1977 5.411053 CCAACCATGCATAAATTTCGGTTTT 59.589 36.000 11.52 0.00 33.09 2.43
743 1978 4.934602 CCAACCATGCATAAATTTCGGTTT 59.065 37.500 11.52 0.00 33.09 3.27
744 1979 4.020662 ACCAACCATGCATAAATTTCGGTT 60.021 37.500 9.02 9.02 35.70 4.44
745 1980 3.513515 ACCAACCATGCATAAATTTCGGT 59.486 39.130 0.00 0.00 0.00 4.69
746 1981 4.122143 ACCAACCATGCATAAATTTCGG 57.878 40.909 0.00 0.00 0.00 4.30
747 1982 4.265085 CGAACCAACCATGCATAAATTTCG 59.735 41.667 0.00 5.96 0.00 3.46
748 1983 5.167845 ACGAACCAACCATGCATAAATTTC 58.832 37.500 0.00 0.00 0.00 2.17
749 1984 5.146010 ACGAACCAACCATGCATAAATTT 57.854 34.783 0.00 0.00 0.00 1.82
750 1985 4.799564 ACGAACCAACCATGCATAAATT 57.200 36.364 0.00 0.00 0.00 1.82
751 1986 4.219507 TGAACGAACCAACCATGCATAAAT 59.780 37.500 0.00 0.00 0.00 1.40
753 1988 3.149981 TGAACGAACCAACCATGCATAA 58.850 40.909 0.00 0.00 0.00 1.90
790 2028 5.107645 GCAATTTTATTTCCGTGACCACAAC 60.108 40.000 0.85 0.00 0.00 3.32
791 2029 4.985409 GCAATTTTATTTCCGTGACCACAA 59.015 37.500 0.85 0.00 0.00 3.33
817 2055 0.834612 TGGATGGACCGGACAATACC 59.165 55.000 9.46 12.27 42.61 2.73
818 2056 2.767505 GATGGATGGACCGGACAATAC 58.232 52.381 9.46 1.22 42.61 1.89
866 2116 4.461431 ACCACCCGGAGTTATGAAATTTTC 59.539 41.667 0.73 2.05 35.59 2.29
1040 2314 1.529744 TGGGGTTTGGGAGTCTCTTT 58.470 50.000 0.00 0.00 0.00 2.52
1042 2316 2.576648 GTTATGGGGTTTGGGAGTCTCT 59.423 50.000 0.00 0.00 0.00 3.10
1043 2317 2.307686 TGTTATGGGGTTTGGGAGTCTC 59.692 50.000 0.00 0.00 0.00 3.36
1095 2376 4.477975 CACGGCGAGGACGAGGAC 62.478 72.222 16.62 0.00 42.66 3.85
1614 2898 3.621715 ACTCGTGTTTGAACTTTGGACTC 59.378 43.478 0.00 0.00 0.00 3.36
1621 2905 3.181500 GGAAGCAACTCGTGTTTGAACTT 60.181 43.478 0.00 2.80 33.52 2.66
1627 2911 1.001378 GCATGGAAGCAACTCGTGTTT 60.001 47.619 0.00 0.00 33.52 2.83
1685 2969 7.769272 TTTTCTAACAAGAAAGGTGCAAATG 57.231 32.000 0.00 0.00 38.76 2.32
1856 3158 9.671279 ATCTCATCAATTGTTTCTGTATGTACA 57.329 29.630 5.13 0.00 34.56 2.90
1888 3190 2.484651 CGAGGGAGTAGATGGTATCACG 59.515 54.545 0.00 0.00 0.00 4.35
1894 3196 0.106116 GGACCGAGGGAGTAGATGGT 60.106 60.000 0.00 0.00 0.00 3.55
1895 3197 0.106167 TGGACCGAGGGAGTAGATGG 60.106 60.000 0.00 0.00 0.00 3.51
1896 3198 1.133761 TCTGGACCGAGGGAGTAGATG 60.134 57.143 0.00 0.00 0.00 2.90
1897 3199 1.223501 TCTGGACCGAGGGAGTAGAT 58.776 55.000 0.00 0.00 0.00 1.98
1898 3200 0.997363 TTCTGGACCGAGGGAGTAGA 59.003 55.000 0.00 0.00 0.00 2.59
1899 3201 2.074729 ATTCTGGACCGAGGGAGTAG 57.925 55.000 0.00 0.00 0.00 2.57
1900 3202 2.544844 AATTCTGGACCGAGGGAGTA 57.455 50.000 0.00 0.00 0.00 2.59
1901 3203 2.292323 ACTAATTCTGGACCGAGGGAGT 60.292 50.000 0.00 0.00 0.00 3.85
1902 3204 2.389715 ACTAATTCTGGACCGAGGGAG 58.610 52.381 0.00 0.00 0.00 4.30
1903 3205 2.544844 ACTAATTCTGGACCGAGGGA 57.455 50.000 0.00 0.00 0.00 4.20
1904 3206 2.500098 TGAACTAATTCTGGACCGAGGG 59.500 50.000 0.00 0.00 35.69 4.30
1905 3207 3.522553 GTGAACTAATTCTGGACCGAGG 58.477 50.000 0.00 0.00 35.69 4.63
1906 3208 3.179830 CGTGAACTAATTCTGGACCGAG 58.820 50.000 0.00 0.00 35.69 4.63
1907 3209 2.673043 GCGTGAACTAATTCTGGACCGA 60.673 50.000 0.00 0.00 35.69 4.69
1908 3210 1.659098 GCGTGAACTAATTCTGGACCG 59.341 52.381 0.00 0.00 35.69 4.79
1909 3211 2.930682 GAGCGTGAACTAATTCTGGACC 59.069 50.000 0.00 0.00 35.69 4.46
1910 3212 3.585862 TGAGCGTGAACTAATTCTGGAC 58.414 45.455 0.00 0.00 35.69 4.02
1911 3213 3.953712 TGAGCGTGAACTAATTCTGGA 57.046 42.857 0.00 0.00 35.69 3.86
1912 3214 4.213270 TGTTTGAGCGTGAACTAATTCTGG 59.787 41.667 0.00 0.00 35.69 3.86
1913 3215 5.342806 TGTTTGAGCGTGAACTAATTCTG 57.657 39.130 0.00 0.00 35.69 3.02
1914 3216 5.558273 CGTTGTTTGAGCGTGAACTAATTCT 60.558 40.000 0.00 0.00 35.69 2.40
1915 3217 4.607235 CGTTGTTTGAGCGTGAACTAATTC 59.393 41.667 0.00 0.00 35.18 2.17
1916 3218 4.034742 ACGTTGTTTGAGCGTGAACTAATT 59.965 37.500 0.00 0.00 37.47 1.40
1917 3219 3.558418 ACGTTGTTTGAGCGTGAACTAAT 59.442 39.130 0.00 0.00 37.47 1.73
1918 3220 2.931325 ACGTTGTTTGAGCGTGAACTAA 59.069 40.909 0.00 0.00 37.47 2.24
1919 3221 2.542597 ACGTTGTTTGAGCGTGAACTA 58.457 42.857 0.00 0.00 37.47 2.24
1920 3222 1.365699 ACGTTGTTTGAGCGTGAACT 58.634 45.000 0.00 0.00 37.47 3.01
1921 3223 3.183775 AGATACGTTGTTTGAGCGTGAAC 59.816 43.478 0.00 0.00 39.31 3.18
1922 3224 3.386486 AGATACGTTGTTTGAGCGTGAA 58.614 40.909 0.00 0.00 39.31 3.18
1923 3225 3.021269 AGATACGTTGTTTGAGCGTGA 57.979 42.857 0.00 0.00 39.31 4.35
1924 3226 4.163552 TCTAGATACGTTGTTTGAGCGTG 58.836 43.478 0.00 0.00 39.31 5.34
1925 3227 4.430137 TCTAGATACGTTGTTTGAGCGT 57.570 40.909 0.00 0.00 41.86 5.07
1926 3228 5.034797 TCATCTAGATACGTTGTTTGAGCG 58.965 41.667 4.54 0.00 0.00 5.03
1927 3229 6.477033 ACATCATCTAGATACGTTGTTTGAGC 59.523 38.462 4.54 0.00 34.43 4.26
1928 3230 7.993821 ACATCATCTAGATACGTTGTTTGAG 57.006 36.000 4.54 0.00 34.43 3.02
1929 3231 7.817478 ACAACATCATCTAGATACGTTGTTTGA 59.183 33.333 25.95 12.65 44.73 2.69
1930 3232 7.963981 ACAACATCATCTAGATACGTTGTTTG 58.036 34.615 25.95 16.61 44.73 2.93
1933 3235 9.084164 GTAAACAACATCATCTAGATACGTTGT 57.916 33.333 25.95 25.95 46.96 3.32
1934 3236 8.259872 CGTAAACAACATCATCTAGATACGTTG 58.740 37.037 25.09 25.09 42.19 4.10
1935 3237 7.434307 CCGTAAACAACATCATCTAGATACGTT 59.566 37.037 4.54 6.37 34.43 3.99
1936 3238 6.916387 CCGTAAACAACATCATCTAGATACGT 59.084 38.462 4.54 0.00 34.43 3.57
1937 3239 6.362551 CCCGTAAACAACATCATCTAGATACG 59.637 42.308 4.54 7.55 34.43 3.06
1938 3240 7.208080 ACCCGTAAACAACATCATCTAGATAC 58.792 38.462 4.54 0.00 34.43 2.24
1939 3241 7.356089 ACCCGTAAACAACATCATCTAGATA 57.644 36.000 4.54 0.00 34.43 1.98
1940 3242 6.235231 ACCCGTAAACAACATCATCTAGAT 57.765 37.500 0.00 0.00 37.48 1.98
1941 3243 5.670792 ACCCGTAAACAACATCATCTAGA 57.329 39.130 0.00 0.00 0.00 2.43
1942 3244 5.064707 CCAACCCGTAAACAACATCATCTAG 59.935 44.000 0.00 0.00 0.00 2.43
1943 3245 4.938832 CCAACCCGTAAACAACATCATCTA 59.061 41.667 0.00 0.00 0.00 1.98
1944 3246 3.756434 CCAACCCGTAAACAACATCATCT 59.244 43.478 0.00 0.00 0.00 2.90
1945 3247 3.754323 TCCAACCCGTAAACAACATCATC 59.246 43.478 0.00 0.00 0.00 2.92
1946 3248 3.757270 TCCAACCCGTAAACAACATCAT 58.243 40.909 0.00 0.00 0.00 2.45
1947 3249 3.210232 TCCAACCCGTAAACAACATCA 57.790 42.857 0.00 0.00 0.00 3.07
1948 3250 7.739498 ATATATCCAACCCGTAAACAACATC 57.261 36.000 0.00 0.00 0.00 3.06
1949 3251 8.528044 AAATATATCCAACCCGTAAACAACAT 57.472 30.769 0.00 0.00 0.00 2.71
1950 3252 7.941431 AAATATATCCAACCCGTAAACAACA 57.059 32.000 0.00 0.00 0.00 3.33
1951 3253 9.940166 CTAAAATATATCCAACCCGTAAACAAC 57.060 33.333 0.00 0.00 0.00 3.32
1952 3254 8.623030 GCTAAAATATATCCAACCCGTAAACAA 58.377 33.333 0.00 0.00 0.00 2.83
1953 3255 7.774157 TGCTAAAATATATCCAACCCGTAAACA 59.226 33.333 0.00 0.00 0.00 2.83
1954 3256 8.156994 TGCTAAAATATATCCAACCCGTAAAC 57.843 34.615 0.00 0.00 0.00 2.01
1955 3257 7.040961 GCTGCTAAAATATATCCAACCCGTAAA 60.041 37.037 0.00 0.00 0.00 2.01
1956 3258 6.428771 GCTGCTAAAATATATCCAACCCGTAA 59.571 38.462 0.00 0.00 0.00 3.18
1957 3259 5.935789 GCTGCTAAAATATATCCAACCCGTA 59.064 40.000 0.00 0.00 0.00 4.02
1958 3260 4.760204 GCTGCTAAAATATATCCAACCCGT 59.240 41.667 0.00 0.00 0.00 5.28
1959 3261 5.003804 AGCTGCTAAAATATATCCAACCCG 58.996 41.667 0.00 0.00 0.00 5.28
1960 3262 6.241645 AGAGCTGCTAAAATATATCCAACCC 58.758 40.000 0.15 0.00 0.00 4.11
1961 3263 8.097662 AGTAGAGCTGCTAAAATATATCCAACC 58.902 37.037 0.15 0.00 0.00 3.77
1962 3264 9.495572 AAGTAGAGCTGCTAAAATATATCCAAC 57.504 33.333 0.15 0.00 0.00 3.77
1965 3267 9.589111 GGTAAGTAGAGCTGCTAAAATATATCC 57.411 37.037 0.15 0.00 0.00 2.59
1966 3268 9.589111 GGGTAAGTAGAGCTGCTAAAATATATC 57.411 37.037 0.15 0.00 0.00 1.63
1967 3269 8.251721 CGGGTAAGTAGAGCTGCTAAAATATAT 58.748 37.037 0.15 0.00 0.00 0.86
1968 3270 7.600065 CGGGTAAGTAGAGCTGCTAAAATATA 58.400 38.462 0.15 0.00 0.00 0.86
1969 3271 6.456501 CGGGTAAGTAGAGCTGCTAAAATAT 58.543 40.000 0.15 0.00 0.00 1.28
1970 3272 5.738208 GCGGGTAAGTAGAGCTGCTAAAATA 60.738 44.000 0.15 0.00 44.20 1.40
1971 3273 4.694339 CGGGTAAGTAGAGCTGCTAAAAT 58.306 43.478 0.15 0.00 0.00 1.82
1972 3274 3.677976 GCGGGTAAGTAGAGCTGCTAAAA 60.678 47.826 0.15 0.00 44.20 1.52
1973 3275 2.159142 GCGGGTAAGTAGAGCTGCTAAA 60.159 50.000 0.15 0.00 44.20 1.85
1974 3276 1.407979 GCGGGTAAGTAGAGCTGCTAA 59.592 52.381 0.15 0.00 44.20 3.09
1975 3277 1.030457 GCGGGTAAGTAGAGCTGCTA 58.970 55.000 0.15 0.00 44.20 3.49
1976 3278 1.817209 GCGGGTAAGTAGAGCTGCT 59.183 57.895 0.00 0.00 44.20 4.24
1977 3279 4.421952 GCGGGTAAGTAGAGCTGC 57.578 61.111 0.00 0.00 41.61 5.25
1978 3280 1.600663 CGATGCGGGTAAGTAGAGCTG 60.601 57.143 0.00 0.00 0.00 4.24
1979 3281 0.669077 CGATGCGGGTAAGTAGAGCT 59.331 55.000 0.00 0.00 0.00 4.09
1980 3282 0.318784 CCGATGCGGGTAAGTAGAGC 60.319 60.000 0.00 0.00 44.15 4.09
1981 3283 3.867723 CCGATGCGGGTAAGTAGAG 57.132 57.895 0.00 0.00 44.15 2.43
1998 3300 3.022607 CCGAATAAGATGACGGTACCC 57.977 52.381 6.25 0.00 40.42 3.69
2004 3306 6.418956 CATTGGTTAACCGAATAAGATGACG 58.581 40.000 18.68 2.93 39.43 4.35
2005 3307 6.238648 CCCATTGGTTAACCGAATAAGATGAC 60.239 42.308 18.68 0.00 39.43 3.06
2006 3308 5.825679 CCCATTGGTTAACCGAATAAGATGA 59.174 40.000 18.68 0.00 39.43 2.92
2007 3309 5.592688 ACCCATTGGTTAACCGAATAAGATG 59.407 40.000 18.68 10.74 44.75 2.90
2008 3310 5.762279 ACCCATTGGTTAACCGAATAAGAT 58.238 37.500 18.68 0.00 44.75 2.40
2009 3311 5.182169 ACCCATTGGTTAACCGAATAAGA 57.818 39.130 18.68 0.00 44.75 2.10
2023 3325 0.038343 CTTGTGGCGAAACCCATTGG 60.038 55.000 0.00 0.00 37.20 3.16
2024 3326 0.038343 CCTTGTGGCGAAACCCATTG 60.038 55.000 0.00 0.00 37.20 2.82
2025 3327 0.178975 TCCTTGTGGCGAAACCCATT 60.179 50.000 0.00 0.00 37.20 3.16
2026 3328 0.039618 ATCCTTGTGGCGAAACCCAT 59.960 50.000 0.00 0.00 37.20 4.00
2027 3329 0.693622 TATCCTTGTGGCGAAACCCA 59.306 50.000 0.00 0.00 37.83 4.51
2028 3330 2.052782 ATATCCTTGTGGCGAAACCC 57.947 50.000 0.00 0.00 37.83 4.11
2029 3331 5.278315 GGATAAATATCCTTGTGGCGAAACC 60.278 44.000 11.46 0.00 46.92 3.27
2030 3332 5.758924 GGATAAATATCCTTGTGGCGAAAC 58.241 41.667 11.46 0.00 46.92 2.78
2045 3347 9.432982 AGTTTTTATCAAGCATGGGGATAAATA 57.567 29.630 0.00 0.00 40.90 1.40
2046 3348 8.322905 AGTTTTTATCAAGCATGGGGATAAAT 57.677 30.769 0.00 0.00 40.90 1.40
2047 3349 7.416213 CGAGTTTTTATCAAGCATGGGGATAAA 60.416 37.037 0.00 0.00 40.07 1.40
2048 3350 6.039270 CGAGTTTTTATCAAGCATGGGGATAA 59.961 38.462 0.00 0.00 33.10 1.75
2049 3351 5.530915 CGAGTTTTTATCAAGCATGGGGATA 59.469 40.000 0.00 0.00 0.00 2.59
2050 3352 4.339247 CGAGTTTTTATCAAGCATGGGGAT 59.661 41.667 0.00 0.00 0.00 3.85
2051 3353 3.694072 CGAGTTTTTATCAAGCATGGGGA 59.306 43.478 0.00 0.00 0.00 4.81
2052 3354 3.734902 GCGAGTTTTTATCAAGCATGGGG 60.735 47.826 0.00 0.00 0.00 4.96
2053 3355 3.129287 AGCGAGTTTTTATCAAGCATGGG 59.871 43.478 0.00 0.00 0.00 4.00
2054 3356 4.142622 TGAGCGAGTTTTTATCAAGCATGG 60.143 41.667 0.00 0.00 0.00 3.66
2055 3357 4.790140 GTGAGCGAGTTTTTATCAAGCATG 59.210 41.667 0.00 0.00 0.00 4.06
2056 3358 4.697352 AGTGAGCGAGTTTTTATCAAGCAT 59.303 37.500 0.00 0.00 0.00 3.79
2057 3359 4.065088 AGTGAGCGAGTTTTTATCAAGCA 58.935 39.130 0.00 0.00 0.00 3.91
2058 3360 4.642953 GAGTGAGCGAGTTTTTATCAAGC 58.357 43.478 0.00 0.00 0.00 4.01
2059 3361 4.722346 GCGAGTGAGCGAGTTTTTATCAAG 60.722 45.833 0.00 0.00 0.00 3.02
2060 3362 3.122948 GCGAGTGAGCGAGTTTTTATCAA 59.877 43.478 0.00 0.00 0.00 2.57
2061 3363 2.666508 GCGAGTGAGCGAGTTTTTATCA 59.333 45.455 0.00 0.00 0.00 2.15
2062 3364 2.924290 AGCGAGTGAGCGAGTTTTTATC 59.076 45.455 0.00 0.00 43.00 1.75
2063 3365 2.924290 GAGCGAGTGAGCGAGTTTTTAT 59.076 45.455 0.00 0.00 43.00 1.40
2064 3366 2.287970 TGAGCGAGTGAGCGAGTTTTTA 60.288 45.455 0.00 0.00 43.00 1.52
2065 3367 1.140816 GAGCGAGTGAGCGAGTTTTT 58.859 50.000 0.00 0.00 43.00 1.94
2066 3368 0.032130 TGAGCGAGTGAGCGAGTTTT 59.968 50.000 0.00 0.00 43.00 2.43
2067 3369 0.387878 CTGAGCGAGTGAGCGAGTTT 60.388 55.000 0.00 0.00 43.00 2.66
2068 3370 1.211449 CTGAGCGAGTGAGCGAGTT 59.789 57.895 0.00 0.00 43.00 3.01
2069 3371 2.695759 CCTGAGCGAGTGAGCGAGT 61.696 63.158 0.00 0.00 43.00 4.18
2070 3372 2.101965 CCTGAGCGAGTGAGCGAG 59.898 66.667 0.00 0.00 43.00 5.03
2071 3373 4.121669 GCCTGAGCGAGTGAGCGA 62.122 66.667 0.00 0.00 43.00 4.93
2072 3374 3.713205 ATGCCTGAGCGAGTGAGCG 62.713 63.158 0.00 0.00 44.31 5.03
2073 3375 1.449246 AATGCCTGAGCGAGTGAGC 60.449 57.895 0.00 0.00 44.31 4.26
2074 3376 1.703438 GCAATGCCTGAGCGAGTGAG 61.703 60.000 0.00 0.00 44.31 3.51
2075 3377 1.742880 GCAATGCCTGAGCGAGTGA 60.743 57.895 0.00 0.00 44.31 3.41
2076 3378 2.789917 GCAATGCCTGAGCGAGTG 59.210 61.111 0.00 0.00 44.31 3.51
2081 3383 0.812811 TGAGATCGCAATGCCTGAGC 60.813 55.000 0.00 0.00 40.48 4.26
2082 3384 1.880271 ATGAGATCGCAATGCCTGAG 58.120 50.000 2.39 0.00 0.00 3.35
2083 3385 3.473923 TTATGAGATCGCAATGCCTGA 57.526 42.857 2.39 0.00 0.00 3.86
2084 3386 4.761235 ATTTATGAGATCGCAATGCCTG 57.239 40.909 2.39 0.00 0.00 4.85
2085 3387 5.106948 CGTAATTTATGAGATCGCAATGCCT 60.107 40.000 2.39 0.00 0.00 4.75
2086 3388 5.082059 CGTAATTTATGAGATCGCAATGCC 58.918 41.667 2.39 0.00 0.00 4.40
2087 3389 5.082059 CCGTAATTTATGAGATCGCAATGC 58.918 41.667 2.39 0.00 0.00 3.56
2088 3390 6.228273 ACCGTAATTTATGAGATCGCAATG 57.772 37.500 2.39 0.00 0.00 2.82
2089 3391 6.260050 ACAACCGTAATTTATGAGATCGCAAT 59.740 34.615 2.39 0.00 0.00 3.56
2090 3392 5.583061 ACAACCGTAATTTATGAGATCGCAA 59.417 36.000 2.39 0.00 0.00 4.85
2091 3393 5.113383 ACAACCGTAATTTATGAGATCGCA 58.887 37.500 0.28 0.28 0.00 5.10
2092 3394 5.652744 ACAACCGTAATTTATGAGATCGC 57.347 39.130 0.00 0.00 0.00 4.58
2093 3395 8.515473 TCATACAACCGTAATTTATGAGATCG 57.485 34.615 0.00 0.00 0.00 3.69
2121 3423 5.049680 GTCTTCGTCTTGTGCATCCTAAAAA 60.050 40.000 0.00 0.00 0.00 1.94
2122 3424 4.451096 GTCTTCGTCTTGTGCATCCTAAAA 59.549 41.667 0.00 0.00 0.00 1.52
2123 3425 3.994392 GTCTTCGTCTTGTGCATCCTAAA 59.006 43.478 0.00 0.00 0.00 1.85
2124 3426 3.585862 GTCTTCGTCTTGTGCATCCTAA 58.414 45.455 0.00 0.00 0.00 2.69
2125 3427 2.094182 GGTCTTCGTCTTGTGCATCCTA 60.094 50.000 0.00 0.00 0.00 2.94
2141 3443 5.568620 ATTAGTTTGGTCACTCAGGTCTT 57.431 39.130 0.00 0.00 0.00 3.01
2170 3472 1.262640 TGGAAACCGGCCTAGGAGAC 61.263 60.000 14.75 0.14 34.73 3.36
2171 3473 0.545787 TTGGAAACCGGCCTAGGAGA 60.546 55.000 14.75 0.00 34.73 3.71
2178 3480 1.001393 TCCATCTTGGAAACCGGCC 60.001 57.895 0.00 0.00 45.00 6.13
2195 3497 4.856607 CCCGAGGCGCGAGAGTTC 62.857 72.222 12.10 0.00 44.57 3.01
2236 3538 0.400213 TTGTGCGGGGTCTTCTCATT 59.600 50.000 0.00 0.00 0.00 2.57
2249 3551 0.869068 TTCAACCGGTACATTGTGCG 59.131 50.000 8.00 0.00 0.00 5.34
2258 3560 5.996644 AGACCATCAATAATTCAACCGGTA 58.003 37.500 8.00 0.00 0.00 4.02
2279 3581 0.776810 TTGACTCATGGGGCCAAAGA 59.223 50.000 4.39 0.00 0.00 2.52
2318 3620 2.887152 AGACACCACAAAATGAGCCTTC 59.113 45.455 0.00 0.00 0.00 3.46
2322 3624 2.618241 TCACAGACACCACAAAATGAGC 59.382 45.455 0.00 0.00 0.00 4.26
2326 3628 5.301551 TGCTATTTCACAGACACCACAAAAT 59.698 36.000 0.00 0.00 0.00 1.82
2355 3657 0.178953 ACACTGCAAAATGGGCCTCT 60.179 50.000 4.53 0.00 0.00 3.69
2370 3672 1.043022 AAACTCCCCGTCGTAACACT 58.957 50.000 0.00 0.00 0.00 3.55
2416 3718 5.687166 TCCTTATATGTTGGTCCGAACTT 57.313 39.130 5.98 3.20 0.00 2.66
2480 3782 4.130118 GGAGACGGAGGAATAAGTACGTA 58.870 47.826 0.00 0.00 34.43 3.57
2487 3789 1.397390 GGCGGGAGACGGAGGAATAA 61.397 60.000 0.00 0.00 44.51 1.40
2527 3832 4.021981 ACTCGACTCATTCACAAGACATGA 60.022 41.667 0.00 0.00 0.00 3.07
2535 3840 1.135660 GCTCGACTCGACTCATTCACA 60.136 52.381 0.00 0.00 0.00 3.58
2567 3872 2.086054 ACGAGAGGAATGACAGTTGC 57.914 50.000 0.00 0.00 0.00 4.17
2576 3881 3.340814 AGCATCAACAACGAGAGGAAT 57.659 42.857 0.00 0.00 0.00 3.01
2584 3889 3.918591 AGTAGTCGTAAGCATCAACAACG 59.081 43.478 0.00 0.00 34.99 4.10
2617 3922 0.616964 TCTCTCCACATGCCTGCTCT 60.617 55.000 0.00 0.00 0.00 4.09
2628 3933 4.591072 AGAATGTATAGCCCTTCTCTCCAC 59.409 45.833 0.00 0.00 0.00 4.02
2629 3934 4.820775 AGAATGTATAGCCCTTCTCTCCA 58.179 43.478 0.00 0.00 0.00 3.86
2633 3938 5.066593 CCCAAAGAATGTATAGCCCTTCTC 58.933 45.833 0.00 0.00 0.00 2.87
2641 3946 5.874093 AGATGCTCCCCAAAGAATGTATAG 58.126 41.667 0.00 0.00 0.00 1.31
2651 3956 0.690192 TCGTTGAGATGCTCCCCAAA 59.310 50.000 0.00 0.00 0.00 3.28
2652 3957 0.250234 CTCGTTGAGATGCTCCCCAA 59.750 55.000 0.00 0.00 0.00 4.12
2654 3959 1.144936 CCTCGTTGAGATGCTCCCC 59.855 63.158 0.00 0.00 0.00 4.81
2655 3960 0.250513 AACCTCGTTGAGATGCTCCC 59.749 55.000 0.00 0.00 0.00 4.30
2656 3961 1.338200 ACAACCTCGTTGAGATGCTCC 60.338 52.381 11.29 0.00 45.28 4.70
2657 3962 1.728971 CACAACCTCGTTGAGATGCTC 59.271 52.381 11.29 0.00 45.28 4.26
2658 3963 1.070758 ACACAACCTCGTTGAGATGCT 59.929 47.619 11.29 0.00 45.28 3.79
2659 3964 1.195448 CACACAACCTCGTTGAGATGC 59.805 52.381 11.29 0.00 45.28 3.91
2660 3965 1.195448 GCACACAACCTCGTTGAGATG 59.805 52.381 11.29 7.13 45.28 2.90
2661 3966 1.070758 AGCACACAACCTCGTTGAGAT 59.929 47.619 11.29 0.00 45.28 2.75
2662 3967 0.464036 AGCACACAACCTCGTTGAGA 59.536 50.000 11.29 0.00 45.28 3.27
2663 3968 1.261619 GAAGCACACAACCTCGTTGAG 59.738 52.381 11.29 6.02 45.28 3.02
2664 3969 1.134521 AGAAGCACACAACCTCGTTGA 60.135 47.619 11.29 0.00 45.28 3.18
2666 3971 1.299541 CAGAAGCACACAACCTCGTT 58.700 50.000 0.00 0.00 0.00 3.85
2667 3972 0.178068 ACAGAAGCACACAACCTCGT 59.822 50.000 0.00 0.00 0.00 4.18
2668 3973 0.861837 GACAGAAGCACACAACCTCG 59.138 55.000 0.00 0.00 0.00 4.63
2684 3989 1.758936 ATCGTGGATGTAGACGGACA 58.241 50.000 0.00 0.00 36.23 4.02
2688 3993 4.625742 AGTCAAAAATCGTGGATGTAGACG 59.374 41.667 0.00 0.00 36.91 4.18
2700 4005 7.230222 GTGATCAGTGAAGTAGTCAAAAATCG 58.770 38.462 0.00 0.00 38.23 3.34
2708 4013 4.421033 TGACGTGATCAGTGAAGTAGTC 57.579 45.455 0.00 6.11 31.91 2.59
2737 4042 4.154737 GCATTCTTCATGGCATCGCTAATA 59.845 41.667 0.00 0.00 32.81 0.98
2750 4055 2.481568 CAGTGACGTGTGCATTCTTCAT 59.518 45.455 0.00 0.00 0.00 2.57
2763 4068 3.233980 TGAGGGCTGCAGTGACGT 61.234 61.111 16.64 7.79 0.00 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.