Multiple sequence alignment - TraesCS4D01G029200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G029200 chr4D 100.000 8627 0 0 1 8627 12777981 12769355 0.000000e+00 15932
1 TraesCS4D01G029200 chr4D 97.718 2235 46 5 1723 3956 129516997 129519227 0.000000e+00 3840
2 TraesCS4D01G029200 chr4D 94.681 658 32 3 1723 2379 502957915 502957260 0.000000e+00 1018
3 TraesCS4D01G029200 chr4D 91.530 366 16 5 3079 3429 502956548 502956183 2.800000e-134 490
4 TraesCS4D01G029200 chr4B 93.454 6599 297 77 1554 8065 23467801 23461251 0.000000e+00 9668
5 TraesCS4D01G029200 chr4B 85.920 1598 113 43 15 1526 23469367 23467796 0.000000e+00 1602
6 TraesCS4D01G029200 chr4A 95.180 4958 171 34 1511 6417 589585690 589590630 0.000000e+00 7769
7 TraesCS4D01G029200 chr4A 87.047 1683 119 56 6416 8070 589590883 589592494 0.000000e+00 1808
8 TraesCS4D01G029200 chr4A 88.776 686 25 17 154 793 589584055 589584734 0.000000e+00 793
9 TraesCS4D01G029200 chr4A 83.649 422 40 13 1056 1453 589585273 589585689 3.800000e-98 370
10 TraesCS4D01G029200 chr5D 96.267 1634 53 6 4040 5669 542693953 542695582 0.000000e+00 2673
11 TraesCS4D01G029200 chr5D 97.516 1530 37 1 1959 3488 133252733 133251205 0.000000e+00 2614
12 TraesCS4D01G029200 chr5D 88.281 1152 121 12 2432 3575 542692151 542693296 0.000000e+00 1367
13 TraesCS4D01G029200 chr5D 97.703 653 14 1 2408 3060 324746516 324747167 0.000000e+00 1122
14 TraesCS4D01G029200 chr5D 97.243 653 16 2 2408 3060 326748229 326747579 0.000000e+00 1105
15 TraesCS4D01G029200 chr5D 96.049 658 23 3 1723 2379 326748881 326748226 0.000000e+00 1068
16 TraesCS4D01G029200 chr5D 85.504 883 103 14 6250 7124 542699763 542700628 0.000000e+00 898
17 TraesCS4D01G029200 chr5D 89.222 501 3 12 3456 3956 133251202 133250753 5.810000e-161 579
18 TraesCS4D01G029200 chr5D 89.806 412 41 1 3640 4050 542693503 542693914 2.130000e-145 527
19 TraesCS4D01G029200 chr5D 91.803 366 15 5 3079 3429 324747230 324747595 6.020000e-136 496
20 TraesCS4D01G029200 chr5D 94.218 294 17 0 5836 6129 542698964 542699257 4.750000e-122 449
21 TraesCS4D01G029200 chr5D 91.265 332 15 4 3112 3429 326747574 326747243 2.860000e-119 440
22 TraesCS4D01G029200 chr5D 78.862 492 64 21 7426 7907 542700929 542701390 6.550000e-76 296
23 TraesCS4D01G029200 chr5D 87.634 186 17 3 6177 6356 442009726 442009911 2.440000e-50 211
24 TraesCS4D01G029200 chr5D 86.179 123 17 0 5675 5797 542695710 542695832 5.430000e-27 134
25 TraesCS4D01G029200 chr5D 97.101 69 2 0 3551 3619 324747647 324747715 5.470000e-22 117
26 TraesCS4D01G029200 chr5D 97.101 69 2 0 3554 3622 326747188 326747120 5.470000e-22 117
27 TraesCS4D01G029200 chr5D 95.652 69 3 0 3554 3622 46618135 46618067 2.550000e-20 111
28 TraesCS4D01G029200 chr2D 97.647 1530 34 2 1959 3488 486352583 486351056 0.000000e+00 2625
29 TraesCS4D01G029200 chr2D 96.607 501 4 2 3456 3956 486351053 486350566 0.000000e+00 819
30 TraesCS4D01G029200 chr2D 96.990 299 9 0 8329 8627 614724427 614724725 3.590000e-138 503
31 TraesCS4D01G029200 chr2D 94.262 244 12 2 8087 8328 614724214 614724457 1.060000e-98 372
32 TraesCS4D01G029200 chr2D 90.476 84 6 1 6177 6258 620624030 620624113 9.160000e-20 110
33 TraesCS4D01G029200 chr7D 97.324 1532 36 5 1959 3488 387368034 387369562 0.000000e+00 2597
34 TraesCS4D01G029200 chr7D 96.230 504 6 2 3453 3956 387369562 387370052 0.000000e+00 813
35 TraesCS4D01G029200 chr7D 97.324 299 8 0 8329 8627 76539248 76539546 7.730000e-140 508
36 TraesCS4D01G029200 chr7D 87.742 310 36 2 8320 8627 571380110 571380419 2.290000e-95 361
37 TraesCS4D01G029200 chr7D 82.796 186 9 15 6177 6356 30294451 30294283 2.510000e-30 145
38 TraesCS4D01G029200 chr1D 94.529 658 33 3 1723 2379 485938998 485939653 0.000000e+00 1013
39 TraesCS4D01G029200 chr1D 88.710 310 33 1 8320 8627 311760580 311760889 2.270000e-100 377
40 TraesCS4D01G029200 chr1D 78.986 276 46 9 6388 6662 16976463 16976727 2.470000e-40 178
41 TraesCS4D01G029200 chr6A 97.324 299 7 1 8329 8627 553855460 553855757 2.780000e-139 507
42 TraesCS4D01G029200 chr6A 95.473 243 10 1 8087 8328 553855248 553855490 3.780000e-103 387
43 TraesCS4D01G029200 chr6A 87.083 240 26 3 8087 8325 74543844 74543609 5.130000e-67 267
44 TraesCS4D01G029200 chr6A 87.083 240 26 3 8087 8325 602834954 602834719 5.130000e-67 267
45 TraesCS4D01G029200 chr2B 95.349 301 12 1 8329 8627 24709415 24709715 2.180000e-130 477
46 TraesCS4D01G029200 chr2B 95.062 243 11 1 8087 8328 24709203 24709445 1.760000e-101 381
47 TraesCS4D01G029200 chr2B 85.448 268 26 5 8067 8325 39142177 39141914 5.130000e-67 267
48 TraesCS4D01G029200 chr3B 95.486 288 13 0 8340 8627 737935819 737935532 2.190000e-125 460
49 TraesCS4D01G029200 chr3B 92.149 242 14 1 8087 8328 737936036 737935800 3.860000e-88 337
50 TraesCS4D01G029200 chr6D 88.449 303 35 0 8325 8627 445410220 445409918 4.920000e-97 366
51 TraesCS4D01G029200 chr6D 88.889 297 32 1 8329 8625 386473453 386473158 1.770000e-96 364
52 TraesCS4D01G029200 chr1B 91.321 265 20 3 8066 8328 84371966 84371703 8.230000e-95 359
53 TraesCS4D01G029200 chr1B 89.686 223 22 1 8107 8328 646079547 646079325 5.100000e-72 283
54 TraesCS4D01G029200 chr7B 87.083 240 26 3 8087 8325 459586618 459586853 5.130000e-67 267


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G029200 chr4D 12769355 12777981 8626 True 15932.000000 15932 100.000000 1 8627 1 chr4D.!!$R1 8626
1 TraesCS4D01G029200 chr4D 129516997 129519227 2230 False 3840.000000 3840 97.718000 1723 3956 1 chr4D.!!$F1 2233
2 TraesCS4D01G029200 chr4D 502956183 502957915 1732 True 754.000000 1018 93.105500 1723 3429 2 chr4D.!!$R2 1706
3 TraesCS4D01G029200 chr4B 23461251 23469367 8116 True 5635.000000 9668 89.687000 15 8065 2 chr4B.!!$R1 8050
4 TraesCS4D01G029200 chr4A 589584055 589592494 8439 False 2685.000000 7769 88.663000 154 8070 4 chr4A.!!$F1 7916
5 TraesCS4D01G029200 chr5D 133250753 133252733 1980 True 1596.500000 2614 93.369000 1959 3956 2 chr5D.!!$R2 1997
6 TraesCS4D01G029200 chr5D 542692151 542701390 9239 False 906.285714 2673 88.445286 2432 7907 7 chr5D.!!$F3 5475
7 TraesCS4D01G029200 chr5D 326747120 326748881 1761 True 682.500000 1105 95.414500 1723 3622 4 chr5D.!!$R3 1899
8 TraesCS4D01G029200 chr5D 324746516 324747715 1199 False 578.333333 1122 95.535667 2408 3619 3 chr5D.!!$F2 1211
9 TraesCS4D01G029200 chr2D 486350566 486352583 2017 True 1722.000000 2625 97.127000 1959 3956 2 chr2D.!!$R1 1997
10 TraesCS4D01G029200 chr2D 614724214 614724725 511 False 437.500000 503 95.626000 8087 8627 2 chr2D.!!$F2 540
11 TraesCS4D01G029200 chr7D 387368034 387370052 2018 False 1705.000000 2597 96.777000 1959 3956 2 chr7D.!!$F3 1997
12 TraesCS4D01G029200 chr1D 485938998 485939653 655 False 1013.000000 1013 94.529000 1723 2379 1 chr1D.!!$F3 656
13 TraesCS4D01G029200 chr6A 553855248 553855757 509 False 447.000000 507 96.398500 8087 8627 2 chr6A.!!$F1 540
14 TraesCS4D01G029200 chr2B 24709203 24709715 512 False 429.000000 477 95.205500 8087 8627 2 chr2B.!!$F1 540
15 TraesCS4D01G029200 chr3B 737935532 737936036 504 True 398.500000 460 93.817500 8087 8627 2 chr3B.!!$R1 540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
110 111 0.174845 TTCCGATGGATGACGACACC 59.825 55.000 0.0 0.0 0.00 4.16 F
1084 1417 0.175760 TAGATGTGGAGCAGGTTCGC 59.824 55.000 0.0 0.0 0.00 4.70 F
1502 1883 0.529337 CATGGCTCACGGCTAGACAG 60.529 60.000 0.0 0.0 34.85 3.51 F
1514 1895 0.758685 CTAGACAGGAGAGGGGCAGG 60.759 65.000 0.0 0.0 0.00 4.85 F
1686 2073 1.202758 TGCCTGGACGAATTTCTGTGT 60.203 47.619 0.0 0.0 0.00 3.72 F
3018 3452 0.846015 CAGGATGGGCAAGGGTGATA 59.154 55.000 0.0 0.0 0.00 2.15 F
4268 5061 1.238439 AGCCACCAGTGACAAATTCG 58.762 50.000 0.0 0.0 0.00 3.34 F
4507 5300 1.271108 GCTCCTAAGCTAGGCAATCCC 60.271 57.143 0.0 0.0 45.82 3.85 F
5274 6067 1.610522 ACTTGCAGCATCGCTTTTTCT 59.389 42.857 0.0 0.0 36.40 2.52 F
6664 11395 0.461135 CTCCTCCTCTTGCTCAGCTC 59.539 60.000 0.0 0.0 0.00 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1747 2134 0.034059 ACTTTCAGTCACGGCTCAGG 59.966 55.000 0.00 0.0 0.00 3.86 R
1988 2377 5.008217 TGTGAAGTCAAATTTAGTTGGGTCG 59.992 40.000 0.00 0.0 0.00 4.79 R
2652 3084 5.760253 TCAACAGACAAGAAAAGATGGAGAC 59.240 40.000 0.00 0.0 0.00 3.36 R
3018 3452 9.679661 AAACAATTGAGGAAAAAGTAAATGGTT 57.320 25.926 13.59 0.0 0.00 3.67 R
4050 4842 9.722056 ATAAACAATTTAGCTATTCTTGCTTCG 57.278 29.630 0.00 0.0 41.46 3.79 R
4444 5237 0.246635 GCCGTTCTGCTGAAGGACTA 59.753 55.000 22.76 0.0 39.60 2.59 R
6380 10855 1.012086 CTGAAGTGGGACATCATGCG 58.988 55.000 0.00 0.0 44.52 4.73 R
6383 10859 1.352017 TGCACTGAAGTGGGACATCAT 59.648 47.619 12.20 0.0 45.72 2.45 R
7300 12057 0.111266 CGCACGTCGACCTCAAAAAG 60.111 55.000 10.58 0.0 41.67 2.27 R
8072 12918 0.037697 TTACGCGCAACAGGTCATCT 60.038 50.000 5.73 0.0 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.568152 AGCGGCACAATGAATATTTACC 57.432 40.909 1.45 0.00 0.00 2.85
31 32 5.676744 CACAATGAATATTTACCGCAACTCG 59.323 40.000 0.00 0.00 38.08 4.18
49 50 6.812160 GCAACTCGAGGACTTTAATAGAAAGA 59.188 38.462 18.41 0.00 0.00 2.52
50 51 7.331193 GCAACTCGAGGACTTTAATAGAAAGAA 59.669 37.037 18.41 0.00 0.00 2.52
53 54 9.774413 ACTCGAGGACTTTAATAGAAAGAAAAA 57.226 29.630 18.41 0.00 0.00 1.94
83 84 6.851222 AACATCTCAATGTAAATAGCGGAG 57.149 37.500 0.00 0.00 45.48 4.63
85 86 6.763355 ACATCTCAATGTAAATAGCGGAGAT 58.237 36.000 0.00 0.00 44.38 2.75
110 111 0.174845 TTCCGATGGATGACGACACC 59.825 55.000 0.00 0.00 0.00 4.16
136 137 3.194116 AGCTAAACATCGACCTCCGTAAA 59.806 43.478 0.00 0.00 39.75 2.01
167 168 6.320672 GGCCATACATCGTATATAGTACACCT 59.679 42.308 0.00 0.00 0.00 4.00
188 190 7.147312 CACCTGTGTTATTGTGACAATCAAAT 58.853 34.615 14.91 0.00 0.00 2.32
213 223 6.159575 TCAATAACCAACAATCCTCTATCCCA 59.840 38.462 0.00 0.00 0.00 4.37
282 292 5.104776 CCTCCTCATCACTAACATCCAAGAA 60.105 44.000 0.00 0.00 0.00 2.52
287 297 7.040478 CCTCATCACTAACATCCAAGAAAAACA 60.040 37.037 0.00 0.00 0.00 2.83
314 324 0.930726 AAGGAAGACCAACCCCAACA 59.069 50.000 0.00 0.00 38.94 3.33
363 377 5.186996 TGGAAAGCATTGAACAAACTCTC 57.813 39.130 0.00 0.00 0.00 3.20
368 382 4.006319 AGCATTGAACAAACTCTCTAGGC 58.994 43.478 0.00 0.00 0.00 3.93
369 383 3.127721 GCATTGAACAAACTCTCTAGGCC 59.872 47.826 0.00 0.00 0.00 5.19
370 384 4.583871 CATTGAACAAACTCTCTAGGCCT 58.416 43.478 11.78 11.78 0.00 5.19
371 385 3.685139 TGAACAAACTCTCTAGGCCTG 57.315 47.619 17.99 5.60 0.00 4.85
372 386 3.239449 TGAACAAACTCTCTAGGCCTGA 58.761 45.455 17.99 10.16 0.00 3.86
447 469 7.232534 GGTGATGGATGGATAGGTAGATAGATC 59.767 44.444 0.00 0.00 0.00 2.75
481 503 0.560688 TCCCCAAAAGAAACCCAGCT 59.439 50.000 0.00 0.00 0.00 4.24
547 581 2.228103 GCGTCACGATATCTATCCACCA 59.772 50.000 0.00 0.00 0.00 4.17
548 582 3.119459 GCGTCACGATATCTATCCACCAT 60.119 47.826 0.00 0.00 0.00 3.55
549 583 4.663166 CGTCACGATATCTATCCACCATC 58.337 47.826 0.00 0.00 0.00 3.51
551 585 4.707448 GTCACGATATCTATCCACCATCCT 59.293 45.833 0.34 0.00 0.00 3.24
837 910 4.779733 TGAGACCGCCCCTCCTCC 62.780 72.222 0.00 0.00 0.00 4.30
844 917 4.890306 GCCCCTCCTCCCCTCTCC 62.890 77.778 0.00 0.00 0.00 3.71
845 918 3.039526 CCCCTCCTCCCCTCTCCT 61.040 72.222 0.00 0.00 0.00 3.69
854 927 4.824515 CCCTCTCCTCCTCGCCGT 62.825 72.222 0.00 0.00 0.00 5.68
857 930 4.405671 TCTCCTCCTCGCCGTCGT 62.406 66.667 0.00 0.00 36.96 4.34
858 931 4.180946 CTCCTCCTCGCCGTCGTG 62.181 72.222 0.00 0.00 36.96 4.35
859 932 4.710167 TCCTCCTCGCCGTCGTGA 62.710 66.667 0.00 0.00 36.96 4.35
860 933 3.518998 CCTCCTCGCCGTCGTGAT 61.519 66.667 0.00 0.00 36.96 3.06
861 934 2.184830 CCTCCTCGCCGTCGTGATA 61.185 63.158 0.00 0.00 36.96 2.15
862 935 1.280142 CTCCTCGCCGTCGTGATAG 59.720 63.158 0.00 0.00 36.96 2.08
863 936 2.353607 CCTCGCCGTCGTGATAGC 60.354 66.667 0.00 0.00 36.96 2.97
864 937 2.353607 CTCGCCGTCGTGATAGCC 60.354 66.667 0.00 0.00 36.96 3.93
865 938 4.246206 TCGCCGTCGTGATAGCCG 62.246 66.667 0.00 0.00 36.96 5.52
867 940 4.570663 GCCGTCGTGATAGCCGCT 62.571 66.667 0.00 0.00 0.00 5.52
868 941 2.353607 CCGTCGTGATAGCCGCTC 60.354 66.667 0.00 0.00 0.00 5.03
869 942 2.722548 CGTCGTGATAGCCGCTCG 60.723 66.667 0.00 0.00 0.00 5.03
873 946 4.266070 GTGATAGCCGCTCGCCGA 62.266 66.667 0.00 0.00 40.02 5.54
874 947 4.266070 TGATAGCCGCTCGCCGAC 62.266 66.667 0.00 0.00 40.02 4.79
980 1053 4.873010 TCCTCCTCTGCTAGTTGTAATCT 58.127 43.478 0.00 0.00 0.00 2.40
994 1067 4.737855 TGTAATCTAGCCTTCGAAGCTT 57.262 40.909 19.99 11.71 41.83 3.74
1009 1082 2.515523 CTTGGAGGATGCGCAGGG 60.516 66.667 18.32 0.00 0.00 4.45
1025 1098 3.356529 CAGGGGTAATCTGCTCTGTTT 57.643 47.619 0.00 0.00 0.00 2.83
1046 1119 0.179189 CGCGATCCCTGCAGTTTTTC 60.179 55.000 13.81 3.22 0.00 2.29
1047 1120 1.168714 GCGATCCCTGCAGTTTTTCT 58.831 50.000 13.81 0.00 0.00 2.52
1051 1124 0.850100 TCCCTGCAGTTTTTCTCCCA 59.150 50.000 13.81 0.00 0.00 4.37
1072 1405 1.217585 CCATCTGCGCGGTAGATGTG 61.218 60.000 25.70 17.15 46.31 3.21
1079 1412 1.227380 GCGGTAGATGTGGAGCAGG 60.227 63.158 0.00 0.00 0.00 4.85
1080 1413 1.961180 GCGGTAGATGTGGAGCAGGT 61.961 60.000 0.00 0.00 0.00 4.00
1081 1414 0.537188 CGGTAGATGTGGAGCAGGTT 59.463 55.000 0.00 0.00 0.00 3.50
1082 1415 1.471676 CGGTAGATGTGGAGCAGGTTC 60.472 57.143 0.00 0.00 0.00 3.62
1083 1416 1.471676 GGTAGATGTGGAGCAGGTTCG 60.472 57.143 0.00 0.00 0.00 3.95
1084 1417 0.175760 TAGATGTGGAGCAGGTTCGC 59.824 55.000 0.00 0.00 0.00 4.70
1085 1418 2.045926 ATGTGGAGCAGGTTCGCC 60.046 61.111 0.00 0.00 37.60 5.54
1113 1459 2.416893 GCTCCTGATTCGACTGTTTTCC 59.583 50.000 0.00 0.00 0.00 3.13
1151 1510 4.433283 CGTGGTCGTTTACGGTAGATTTTG 60.433 45.833 2.09 0.00 40.29 2.44
1166 1525 4.843728 AGATTTTGCCTAGATCCGTTTGA 58.156 39.130 0.00 0.00 0.00 2.69
1171 1530 2.304761 TGCCTAGATCCGTTTGAAGGTT 59.695 45.455 0.00 0.00 0.00 3.50
1175 1534 4.081642 CCTAGATCCGTTTGAAGGTTCTGA 60.082 45.833 6.19 0.00 38.07 3.27
1336 1700 2.254918 TGTTTGTTGTTCAGCGTGTG 57.745 45.000 0.00 0.00 0.00 3.82
1412 1792 1.549037 CGGAAAAGGAAACATGGGGGA 60.549 52.381 0.00 0.00 0.00 4.81
1498 1879 2.590007 GCCATGGCTCACGGCTAG 60.590 66.667 29.98 0.00 42.78 3.42
1502 1883 0.529337 CATGGCTCACGGCTAGACAG 60.529 60.000 0.00 0.00 34.85 3.51
1514 1895 0.758685 CTAGACAGGAGAGGGGCAGG 60.759 65.000 0.00 0.00 0.00 4.85
1548 1929 3.128764 TGAACAACACGGCATGTAACAAA 59.871 39.130 0.00 0.00 42.31 2.83
1552 1935 2.481854 ACACGGCATGTAACAAACGTA 58.518 42.857 0.00 0.00 40.88 3.57
1564 1947 2.830104 ACAAACGTACAGTTCAGGTCC 58.170 47.619 0.00 0.00 43.37 4.46
1611 1994 4.390297 CAGGAATTCTGACGAGGTTTTCTC 59.610 45.833 5.23 0.00 46.18 2.87
1621 2008 2.675317 CGAGGTTTTCTCACTGGCTAGG 60.675 54.545 0.85 0.00 42.55 3.02
1641 2028 3.583086 AGGTACAGATTTACACAGGCTGT 59.417 43.478 15.88 15.88 42.04 4.40
1686 2073 1.202758 TGCCTGGACGAATTTCTGTGT 60.203 47.619 0.00 0.00 0.00 3.72
1694 2081 5.168569 GGACGAATTTCTGTGTGTATCAGA 58.831 41.667 0.00 0.00 39.71 3.27
1801 2188 8.112822 TGTTAGGATTGGAGTGGATTGATTTTA 58.887 33.333 0.00 0.00 0.00 1.52
1831 2218 7.887996 TTTAAAAAGCAGCAGTGATTTATGG 57.112 32.000 0.00 0.00 41.44 2.74
1931 2318 5.139727 CCTATGGCCTGTGAAATCCAAATA 58.860 41.667 3.32 0.00 31.66 1.40
1992 2381 8.154649 AGAATTGTTGAATTATATGGACGACC 57.845 34.615 0.00 0.00 31.58 4.79
2567 2996 3.049912 GCATTTTCGTTCCCACTGTTTC 58.950 45.455 0.00 0.00 0.00 2.78
2652 3084 8.479280 GTTATTTGTGCAGTACATTTGTTCTTG 58.521 33.333 0.00 0.00 39.48 3.02
3018 3452 0.846015 CAGGATGGGCAAGGGTGATA 59.154 55.000 0.00 0.00 0.00 2.15
4151 4944 3.013921 GGGTCTTGCGAAATATGTGGAA 58.986 45.455 0.00 0.00 0.00 3.53
4268 5061 1.238439 AGCCACCAGTGACAAATTCG 58.762 50.000 0.00 0.00 0.00 3.34
4330 5123 6.390721 GTTTCATGTTCTCAGTAGCAGTCTA 58.609 40.000 0.00 0.00 0.00 2.59
4339 5132 7.213216 TCTCAGTAGCAGTCTATTGATCATC 57.787 40.000 0.00 0.00 39.69 2.92
4444 5237 2.440627 TGATGATGCTGCTCCTTATGGT 59.559 45.455 0.00 0.00 34.23 3.55
4507 5300 1.271108 GCTCCTAAGCTAGGCAATCCC 60.271 57.143 0.00 0.00 45.82 3.85
4567 5360 3.334583 TCTAAGGAATTCTTGCGCACT 57.665 42.857 11.12 0.00 36.93 4.40
4653 5446 9.613428 TGAGAAGTTGATTTCTTAGTTGAGAAA 57.387 29.630 2.91 2.91 46.36 2.52
4724 5517 9.607333 ATGGAATATTCTAGAAGGATCAGTACA 57.393 33.333 14.95 0.79 0.00 2.90
4793 5586 6.349611 CCAGAGTTTTGGATTATGGTTCAGTG 60.350 42.308 0.00 0.00 40.87 3.66
4928 5721 6.873997 TGAGATATCAAAACACCGTGACTAT 58.126 36.000 5.28 0.00 0.00 2.12
5274 6067 1.610522 ACTTGCAGCATCGCTTTTTCT 59.389 42.857 0.00 0.00 36.40 2.52
5406 6199 4.100653 CCTCTCTGCTTTGTCCATATCTCA 59.899 45.833 0.00 0.00 0.00 3.27
5509 6302 3.264450 CCTTGTGGGAGTCTAAGACCAAT 59.736 47.826 0.00 0.00 37.23 3.16
5527 6320 4.141959 ACCAATGTGGGTTCTGTTCTTTTG 60.142 41.667 0.00 0.00 43.37 2.44
5749 6667 4.868734 GGTGAAGAAGTTACTAATGGGTCG 59.131 45.833 0.00 0.00 0.00 4.79
5779 6697 7.927629 TCTGAATCCAAACAAAAGGAAATTCTG 59.072 33.333 0.00 0.00 37.48 3.02
5786 6704 7.011389 CCAAACAAAAGGAAATTCTGAAGGTTC 59.989 37.037 7.67 7.67 0.00 3.62
6149 10619 8.489489 AGATTGGCTATTAAATTCAGACTCTGA 58.511 33.333 4.50 4.50 38.87 3.27
6160 10630 8.571461 AAATTCAGACTCTGATTTCAGCAATA 57.429 30.769 9.63 0.00 40.39 1.90
6194 10664 3.097614 ACTTAGACCTGTCATTAGCCGT 58.902 45.455 0.00 0.00 0.00 5.68
6248 10718 4.775780 TCTACTTAAGCTGCTGGACCTTAA 59.224 41.667 1.35 0.00 32.11 1.85
6289 10759 9.262358 GTTAGGATCATTTAGGTGAAGTGATAC 57.738 37.037 0.00 0.00 42.73 2.24
6294 10764 5.822519 TCATTTAGGTGAAGTGATACATGCC 59.177 40.000 0.00 0.00 29.41 4.40
6380 10855 7.075741 AGTTGACAGTATTGTTGAAAATACGC 58.924 34.615 0.00 0.00 44.34 4.42
6383 10859 4.083749 ACAGTATTGTTGAAAATACGCGCA 60.084 37.500 5.73 0.00 44.34 6.09
6394 10870 0.880278 ATACGCGCATGATGTCCCAC 60.880 55.000 5.73 0.00 0.00 4.61
6664 11395 0.461135 CTCCTCCTCTTGCTCAGCTC 59.539 60.000 0.00 0.00 0.00 4.09
6685 11416 2.573941 GCAGCCTTGCCTTCATAAAG 57.426 50.000 0.00 0.00 44.74 1.85
6700 11431 0.984230 TAAAGGTGCCTGGTCTGGAG 59.016 55.000 0.00 0.00 0.00 3.86
6832 11563 0.685097 GACAAGGCACTGGACCTGTA 59.315 55.000 3.37 0.00 40.86 2.74
6952 11683 0.961753 AGCTTTGTTTACTGGCTGGC 59.038 50.000 0.00 0.00 31.68 4.85
6956 11687 2.750237 GTTTACTGGCTGGCGGGG 60.750 66.667 15.00 1.28 0.00 5.73
6965 11696 3.136123 CTGGCGGGGTTCTGCATG 61.136 66.667 0.00 0.00 46.76 4.06
7002 11733 7.861629 TCTTTCCATGAGGAGCTTTCTTTATA 58.138 34.615 0.00 0.00 46.74 0.98
7033 11765 7.830739 AGTTTGCTATGAAAATAGTTTGGAGG 58.169 34.615 0.00 0.00 0.00 4.30
7069 11801 7.639945 AGCAGTTTGAGTAGTTTTACACAATC 58.360 34.615 0.00 0.28 39.18 2.67
7072 11804 8.612619 CAGTTTGAGTAGTTTTACACAATCACT 58.387 33.333 7.91 4.00 39.18 3.41
7076 11808 7.722363 TGAGTAGTTTTACACAATCACTCAGA 58.278 34.615 0.00 0.00 36.99 3.27
7079 11811 9.561069 AGTAGTTTTACACAATCACTCAGAATT 57.439 29.630 0.00 0.00 31.96 2.17
7085 11817 9.725019 TTTACACAATCACTCAGAATTAGTCAT 57.275 29.630 0.00 0.00 0.00 3.06
7172 11927 5.239525 GGAAATGTAGCTTCGGAAATGCTAT 59.760 40.000 12.91 0.49 40.70 2.97
7173 11928 6.426937 GGAAATGTAGCTTCGGAAATGCTATA 59.573 38.462 12.91 11.25 40.70 1.31
7175 11930 5.270893 TGTAGCTTCGGAAATGCTATACA 57.729 39.130 12.91 8.52 40.70 2.29
7201 11958 5.464030 GGATTGTTATCCGCTAGTTCCTA 57.536 43.478 0.00 0.00 40.98 2.94
7205 11962 5.052693 TGTTATCCGCTAGTTCCTACCTA 57.947 43.478 0.00 0.00 0.00 3.08
7209 11966 2.243221 TCCGCTAGTTCCTACCTACCTT 59.757 50.000 0.00 0.00 0.00 3.50
7211 11968 4.079787 TCCGCTAGTTCCTACCTACCTTAA 60.080 45.833 0.00 0.00 0.00 1.85
7212 11969 4.277921 CCGCTAGTTCCTACCTACCTTAAG 59.722 50.000 0.00 0.00 0.00 1.85
7214 11971 6.058183 CGCTAGTTCCTACCTACCTTAAGTA 58.942 44.000 0.97 0.00 0.00 2.24
7216 11973 7.308469 CGCTAGTTCCTACCTACCTTAAGTATG 60.308 44.444 0.97 0.00 0.00 2.39
7218 11975 9.418839 CTAGTTCCTACCTACCTTAAGTATGTT 57.581 37.037 0.97 0.00 32.70 2.71
7219 11976 8.676397 AGTTCCTACCTACCTTAAGTATGTTT 57.324 34.615 0.97 0.00 32.70 2.83
7220 11977 9.109246 AGTTCCTACCTACCTTAAGTATGTTTT 57.891 33.333 0.97 0.00 32.70 2.43
7221 11978 9.159364 GTTCCTACCTACCTTAAGTATGTTTTG 57.841 37.037 0.97 0.00 32.70 2.44
7224 11981 7.551617 CCTACCTACCTTAAGTATGTTTTGTGG 59.448 40.741 0.97 0.00 32.70 4.17
7225 11982 6.844829 ACCTACCTTAAGTATGTTTTGTGGT 58.155 36.000 0.97 0.00 0.00 4.16
7226 11983 6.713450 ACCTACCTTAAGTATGTTTTGTGGTG 59.287 38.462 0.97 0.00 0.00 4.17
7227 11984 6.713450 CCTACCTTAAGTATGTTTTGTGGTGT 59.287 38.462 0.97 0.00 0.00 4.16
7240 11997 7.171653 TGTTTTGTGGTGTATATGGATTCTGA 58.828 34.615 0.00 0.00 0.00 3.27
7270 12027 3.927142 GGAAACATCGTCTCAGTTACCAG 59.073 47.826 0.00 0.00 0.00 4.00
7271 12028 2.656560 ACATCGTCTCAGTTACCAGC 57.343 50.000 0.00 0.00 0.00 4.85
7276 12033 3.008330 TCGTCTCAGTTACCAGCTACTC 58.992 50.000 0.00 0.00 0.00 2.59
7290 12047 4.355437 CAGCTACTCTGGTTTATCTGACG 58.645 47.826 0.00 0.00 39.15 4.35
7292 12049 4.096682 AGCTACTCTGGTTTATCTGACGTC 59.903 45.833 9.11 9.11 0.00 4.34
7294 12051 4.442375 ACTCTGGTTTATCTGACGTCTG 57.558 45.455 17.92 16.72 0.00 3.51
7295 12052 4.079970 ACTCTGGTTTATCTGACGTCTGA 58.920 43.478 24.74 24.74 0.00 3.27
7297 12054 4.079970 TCTGGTTTATCTGACGTCTGAGT 58.920 43.478 26.06 17.49 0.00 3.41
7299 12056 5.708697 TCTGGTTTATCTGACGTCTGAGTTA 59.291 40.000 26.06 14.46 0.00 2.24
7300 12057 5.706916 TGGTTTATCTGACGTCTGAGTTAC 58.293 41.667 26.06 21.18 0.00 2.50
7315 12072 4.046462 TGAGTTACTTTTTGAGGTCGACG 58.954 43.478 9.92 0.00 0.00 5.12
7330 12087 3.678915 TCGACGTGCGAGTTATATTCA 57.321 42.857 0.00 0.00 45.59 2.57
7332 12089 4.603985 TCGACGTGCGAGTTATATTCAAT 58.396 39.130 0.00 0.00 45.59 2.57
7333 12090 4.439776 TCGACGTGCGAGTTATATTCAATG 59.560 41.667 0.00 0.00 45.59 2.82
7334 12091 4.439776 CGACGTGCGAGTTATATTCAATGA 59.560 41.667 0.00 0.00 44.57 2.57
7338 12095 7.345192 ACGTGCGAGTTATATTCAATGAATTC 58.655 34.615 14.15 4.34 33.95 2.17
7339 12096 7.011016 ACGTGCGAGTTATATTCAATGAATTCA 59.989 33.333 14.15 11.26 33.95 2.57
7340 12097 7.528516 CGTGCGAGTTATATTCAATGAATTCAG 59.471 37.037 14.15 1.16 33.95 3.02
7341 12098 8.338259 GTGCGAGTTATATTCAATGAATTCAGT 58.662 33.333 14.15 8.63 33.95 3.41
7368 12125 8.807948 TTATTAGCATTATTTCCTATCCCAGC 57.192 34.615 0.00 0.00 0.00 4.85
7369 12126 6.454223 TTAGCATTATTTCCTATCCCAGCT 57.546 37.500 0.00 0.00 0.00 4.24
7387 12147 6.656270 TCCCAGCTTAGATGCATATTTATGTG 59.344 38.462 0.00 0.00 36.11 3.21
7391 12151 9.177304 CAGCTTAGATGCATATTTATGTGTTTG 57.823 33.333 0.00 0.00 36.11 2.93
7396 12156 8.253867 AGATGCATATTTATGTGTTTGGGAAT 57.746 30.769 0.00 0.00 36.11 3.01
7415 12181 6.056236 GGGAATAGTCAACTTCATCCCTAAC 58.944 44.000 15.19 0.00 37.65 2.34
7417 12183 7.283329 GGAATAGTCAACTTCATCCCTAACAT 58.717 38.462 0.00 0.00 0.00 2.71
7430 12233 4.392047 TCCCTAACATGCTCATGCTAATG 58.608 43.478 9.58 0.00 42.39 1.90
7432 12235 4.581824 CCCTAACATGCTCATGCTAATGTT 59.418 41.667 17.85 17.85 43.52 2.71
7640 12456 2.025155 TCGGTAGATGAGAGAAGGCAC 58.975 52.381 0.00 0.00 0.00 5.01
7919 12765 6.970484 ACCAAATAAAGTGACTTTACTGCTG 58.030 36.000 18.99 13.03 38.51 4.41
7924 12770 3.669251 AGTGACTTTACTGCTGTCCTC 57.331 47.619 0.00 0.00 0.00 3.71
7942 12788 6.119536 TGTCCTCTGTTGTTGTTATGTTTCT 58.880 36.000 0.00 0.00 0.00 2.52
7971 12817 6.596106 TGCATTCGCTGGTAAAGATAGTTTTA 59.404 34.615 0.00 0.00 39.64 1.52
7977 12823 8.689061 TCGCTGGTAAAGATAGTTTTATACTCA 58.311 33.333 0.00 0.00 38.33 3.41
8016 12862 2.482316 GCATGGCATTTTAGCAGCATGA 60.482 45.455 0.00 0.00 39.69 3.07
8018 12864 4.559906 GCATGGCATTTTAGCAGCATGATA 60.560 41.667 0.00 0.00 39.69 2.15
8028 12874 1.542108 GCAGCATGATAGGGGACTCAC 60.542 57.143 0.00 0.00 39.92 3.51
8077 12923 4.551702 TGCCTTTGCAAGTACTAGATGA 57.448 40.909 0.00 0.00 46.66 2.92
8078 12924 4.253685 TGCCTTTGCAAGTACTAGATGAC 58.746 43.478 0.00 0.00 46.66 3.06
8079 12925 3.623510 GCCTTTGCAAGTACTAGATGACC 59.376 47.826 0.00 0.00 37.47 4.02
8080 12926 4.624125 GCCTTTGCAAGTACTAGATGACCT 60.624 45.833 0.00 0.00 37.47 3.85
8081 12927 4.872691 CCTTTGCAAGTACTAGATGACCTG 59.127 45.833 0.00 0.00 0.00 4.00
8082 12928 5.482908 CTTTGCAAGTACTAGATGACCTGT 58.517 41.667 0.00 0.00 0.00 4.00
8083 12929 5.483685 TTGCAAGTACTAGATGACCTGTT 57.516 39.130 0.00 0.00 0.00 3.16
8084 12930 4.820897 TGCAAGTACTAGATGACCTGTTG 58.179 43.478 0.00 0.00 0.00 3.33
8085 12931 3.619038 GCAAGTACTAGATGACCTGTTGC 59.381 47.826 0.00 0.00 0.00 4.17
8089 12935 0.458543 CTAGATGACCTGTTGCGCGT 60.459 55.000 8.43 0.00 0.00 6.01
8115 12961 6.415206 AGGCCGAGTGTAAGCTAATTATTA 57.585 37.500 0.00 0.00 0.00 0.98
8207 13054 6.655078 AGTTTGGAAATGATGCACTAAGTT 57.345 33.333 0.00 0.00 0.00 2.66
8233 13080 6.253758 TGTAGGAAAGGACTCTTGTGATCTA 58.746 40.000 0.00 0.00 32.75 1.98
8324 13171 8.498054 TTTTTATCATGGTTGTTTCAAAAGCA 57.502 26.923 0.00 0.00 39.17 3.91
8325 13172 7.475771 TTTATCATGGTTGTTTCAAAAGCAC 57.524 32.000 0.00 0.00 37.81 4.40
8326 13173 4.462508 TCATGGTTGTTTCAAAAGCACA 57.537 36.364 0.00 0.00 37.81 4.57
8327 13174 4.180057 TCATGGTTGTTTCAAAAGCACAC 58.820 39.130 0.00 0.00 37.81 3.82
8348 13195 7.865385 GCACACTTCTTTTATCATGGTTGTTTA 59.135 33.333 0.00 0.00 0.00 2.01
8523 13372 4.717233 TGCAACTTGCTTATATTGGGTG 57.283 40.909 14.78 0.00 45.31 4.61
8588 13437 3.952535 GCATATGCTTACCCTTTGTTCG 58.047 45.455 20.64 0.00 38.21 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.348164 GGTAAATATTCATTGTGCCGCTTT 58.652 37.500 0.00 0.00 0.00 3.51
1 2 4.497340 CGGTAAATATTCATTGTGCCGCTT 60.497 41.667 1.48 0.00 30.48 4.68
2 3 3.003275 CGGTAAATATTCATTGTGCCGCT 59.997 43.478 1.48 0.00 30.48 5.52
3 4 3.296628 CGGTAAATATTCATTGTGCCGC 58.703 45.455 1.48 0.00 30.48 6.53
4 5 3.242903 TGCGGTAAATATTCATTGTGCCG 60.243 43.478 8.68 8.68 35.57 5.69
5 6 4.300189 TGCGGTAAATATTCATTGTGCC 57.700 40.909 0.00 0.00 0.00 5.01
6 7 5.339990 AGTTGCGGTAAATATTCATTGTGC 58.660 37.500 0.00 0.00 0.00 4.57
7 8 5.676744 CGAGTTGCGGTAAATATTCATTGTG 59.323 40.000 0.00 0.00 36.03 3.33
8 9 5.583061 TCGAGTTGCGGTAAATATTCATTGT 59.417 36.000 0.00 0.00 41.33 2.71
9 10 6.043327 TCGAGTTGCGGTAAATATTCATTG 57.957 37.500 0.00 0.00 41.33 2.82
10 11 5.236478 CCTCGAGTTGCGGTAAATATTCATT 59.764 40.000 12.31 0.00 41.33 2.57
11 12 4.750098 CCTCGAGTTGCGGTAAATATTCAT 59.250 41.667 12.31 0.00 41.33 2.57
12 13 4.116961 CCTCGAGTTGCGGTAAATATTCA 58.883 43.478 12.31 0.00 41.33 2.57
13 14 4.208666 GTCCTCGAGTTGCGGTAAATATTC 59.791 45.833 12.31 0.00 41.33 1.75
23 24 4.669318 TCTATTAAAGTCCTCGAGTTGCG 58.331 43.478 12.31 0.00 42.69 4.85
56 57 9.337396 TCCGCTATTTACATTGAGATGTTTATT 57.663 29.630 0.00 0.00 43.92 1.40
57 58 8.902540 TCCGCTATTTACATTGAGATGTTTAT 57.097 30.769 0.00 0.00 43.92 1.40
58 59 8.201464 TCTCCGCTATTTACATTGAGATGTTTA 58.799 33.333 0.00 0.00 43.92 2.01
59 60 7.047891 TCTCCGCTATTTACATTGAGATGTTT 58.952 34.615 0.00 0.00 43.92 2.83
62 63 7.814587 TGTATCTCCGCTATTTACATTGAGATG 59.185 37.037 8.86 0.00 38.27 2.90
71 72 6.818416 CGGAATTTGTATCTCCGCTATTTAC 58.182 40.000 0.00 0.00 44.99 2.01
83 84 4.988540 TCGTCATCCATCGGAATTTGTATC 59.011 41.667 0.00 0.00 34.34 2.24
85 86 4.116961 GTCGTCATCCATCGGAATTTGTA 58.883 43.478 0.00 0.00 34.34 2.41
110 111 2.186076 GAGGTCGATGTTTAGCTCACG 58.814 52.381 0.00 0.00 39.48 4.35
152 153 9.177304 CACAATAACACAGGTGTACTATATACG 57.823 37.037 5.36 0.00 44.13 3.06
188 190 6.159575 TGGGATAGAGGATTGTTGGTTATTGA 59.840 38.462 0.00 0.00 0.00 2.57
195 197 3.395607 TGGATGGGATAGAGGATTGTTGG 59.604 47.826 0.00 0.00 0.00 3.77
282 292 6.844097 TGGTCTTCCTTTTAGTTGTGTTTT 57.156 33.333 0.00 0.00 34.23 2.43
287 297 4.212716 GGGTTGGTCTTCCTTTTAGTTGT 58.787 43.478 0.00 0.00 34.23 3.32
314 324 6.414732 TGTTTCTATCATCGATCTGGGTTTT 58.585 36.000 0.00 0.00 0.00 2.43
363 377 2.549778 GCAGCTTTATCCTCAGGCCTAG 60.550 54.545 3.98 3.37 0.00 3.02
368 382 2.706339 ACAGCAGCTTTATCCTCAGG 57.294 50.000 0.00 0.00 0.00 3.86
369 383 4.953667 TGATACAGCAGCTTTATCCTCAG 58.046 43.478 21.08 0.00 0.00 3.35
370 384 5.306419 AGATGATACAGCAGCTTTATCCTCA 59.694 40.000 24.45 12.31 28.54 3.86
371 385 5.638657 CAGATGATACAGCAGCTTTATCCTC 59.361 44.000 21.08 19.98 31.05 3.71
372 386 5.071519 ACAGATGATACAGCAGCTTTATCCT 59.928 40.000 21.08 14.00 31.05 3.24
447 469 1.077716 GGGAAATGACGAGGTGGGG 60.078 63.158 0.00 0.00 0.00 4.96
481 503 0.525455 CTGCACGCTACGTCATGCTA 60.525 55.000 12.58 2.00 38.32 3.49
545 579 1.468985 ACGTGAGTCAGAGAGGATGG 58.531 55.000 0.00 0.00 44.19 3.51
835 908 4.144727 GGCGAGGAGGAGAGGGGA 62.145 72.222 0.00 0.00 0.00 4.81
837 910 4.824515 ACGGCGAGGAGGAGAGGG 62.825 72.222 16.62 0.00 0.00 4.30
838 911 3.213402 GACGGCGAGGAGGAGAGG 61.213 72.222 16.62 0.00 0.00 3.69
842 915 2.598098 TATCACGACGGCGAGGAGGA 62.598 60.000 22.49 6.96 41.64 3.71
844 917 1.280142 CTATCACGACGGCGAGGAG 59.720 63.158 22.49 7.16 41.64 3.69
845 918 2.831366 GCTATCACGACGGCGAGGA 61.831 63.158 22.49 15.95 41.64 3.71
854 927 4.266070 GGCGAGCGGCTATCACGA 62.266 66.667 12.27 0.00 42.94 4.35
857 930 4.266070 GTCGGCGAGCGGCTATCA 62.266 66.667 11.20 0.00 42.94 2.15
943 1016 1.768870 GGAGGAGATCGGGAATGGAAA 59.231 52.381 0.00 0.00 0.00 3.13
980 1053 0.537188 CCTCCAAGCTTCGAAGGCTA 59.463 55.000 25.77 8.41 39.30 3.93
994 1067 3.993865 TACCCCTGCGCATCCTCCA 62.994 63.158 12.24 0.00 0.00 3.86
1009 1082 2.222819 CGCGAAAACAGAGCAGATTACC 60.223 50.000 0.00 0.00 0.00 2.85
1019 1092 1.019278 GCAGGGATCGCGAAAACAGA 61.019 55.000 15.24 0.00 0.00 3.41
1025 1098 0.605319 AAAACTGCAGGGATCGCGAA 60.605 50.000 19.93 0.00 0.00 4.70
1051 1124 2.134287 ATCTACCGCGCAGATGGGT 61.134 57.895 17.51 8.87 37.84 4.51
1064 1397 1.927895 CGAACCTGCTCCACATCTAC 58.072 55.000 0.00 0.00 0.00 2.59
1088 1421 1.203523 ACAGTCGAATCAGGAGCACTC 59.796 52.381 0.00 0.00 0.00 3.51
1113 1459 0.797249 CCACGAACTACCGCTCGAAG 60.797 60.000 0.00 0.00 38.43 3.79
1151 1510 2.693267 ACCTTCAAACGGATCTAGGC 57.307 50.000 0.00 0.00 0.00 3.93
1189 1550 6.530534 CACTAGATCTACGTTAAACCCAACAG 59.469 42.308 0.00 0.00 0.00 3.16
1300 1664 5.869579 ACAAACATGTTCCTACAGATCTGT 58.130 37.500 30.11 30.11 46.87 3.41
1412 1792 2.142292 ATCCTCCGGGTGCAGCTTTT 62.142 55.000 16.65 0.00 0.00 2.27
1430 1810 0.114168 TGGTGGGCACAAGGCTAAAT 59.886 50.000 0.00 0.00 44.01 1.40
1453 1833 0.321830 GGCTGCCATGCAACCAAAAT 60.322 50.000 15.17 0.00 43.48 1.82
1474 1854 0.388907 CGTGAGCCATGGCAAAAAGG 60.389 55.000 37.18 20.03 44.88 3.11
1498 1879 3.086600 CCCTGCCCCTCTCCTGTC 61.087 72.222 0.00 0.00 0.00 3.51
1502 1883 3.424105 ATTGCCCTGCCCCTCTCC 61.424 66.667 0.00 0.00 0.00 3.71
1514 1895 1.268999 TGTTGTTCAGAACGCATTGCC 60.269 47.619 8.80 0.00 0.00 4.52
1548 1929 1.288127 GCGGACCTGAACTGTACGT 59.712 57.895 0.00 0.00 42.07 3.57
1552 1935 4.003788 CCGGCGGACCTGAACTGT 62.004 66.667 24.41 0.00 0.00 3.55
1564 1947 4.873129 CGGATCTGTGACCCGGCG 62.873 72.222 0.00 0.00 39.59 6.46
1611 1994 5.109903 GTGTAAATCTGTACCTAGCCAGTG 58.890 45.833 0.00 0.00 0.00 3.66
1621 2008 6.090898 CACTAACAGCCTGTGTAAATCTGTAC 59.909 42.308 0.00 0.00 39.03 2.90
1641 2028 1.229428 GCACAGAGCTGCAACACTAA 58.771 50.000 1.02 0.00 41.15 2.24
1705 2092 4.346970 CAGTGCACACAAAACATACGAAA 58.653 39.130 21.04 0.00 0.00 3.46
1744 2131 1.536073 TTCAGTCACGGCTCAGGGAG 61.536 60.000 0.00 0.00 0.00 4.30
1745 2132 1.118965 TTTCAGTCACGGCTCAGGGA 61.119 55.000 0.00 0.00 0.00 4.20
1747 2134 0.034059 ACTTTCAGTCACGGCTCAGG 59.966 55.000 0.00 0.00 0.00 3.86
1766 2153 5.183713 CACTCCAATCCTAACATTGCAGAAA 59.816 40.000 0.00 0.00 33.08 2.52
1801 2188 5.659463 TCACTGCTGCTTTTTAAATGTTGT 58.341 33.333 0.00 0.00 0.00 3.32
1931 2318 7.825270 ACATGCATGTTCCATAATTTTCATTGT 59.175 29.630 26.61 0.00 37.90 2.71
1988 2377 5.008217 TGTGAAGTCAAATTTAGTTGGGTCG 59.992 40.000 0.00 0.00 0.00 4.79
1992 2381 6.076981 AGCTGTGAAGTCAAATTTAGTTGG 57.923 37.500 0.00 0.00 0.00 3.77
2567 2996 9.169468 GTCAAATTATACAAACAGAACACAGTG 57.831 33.333 0.00 0.00 0.00 3.66
2626 3056 8.479280 CAAGAACAAATGTACTGCACAAATAAC 58.521 33.333 0.00 0.00 41.55 1.89
2652 3084 5.760253 TCAACAGACAAGAAAAGATGGAGAC 59.240 40.000 0.00 0.00 0.00 3.36
3018 3452 9.679661 AAACAATTGAGGAAAAAGTAAATGGTT 57.320 25.926 13.59 0.00 0.00 3.67
4050 4842 9.722056 ATAAACAATTTAGCTATTCTTGCTTCG 57.278 29.630 0.00 0.00 41.46 3.79
4082 4874 8.697067 CAGTTAAGAAATGCAAATGTCTGAAAG 58.303 33.333 0.00 0.00 0.00 2.62
4151 4944 1.482182 TCTAGCATGTTCGCACTCCAT 59.518 47.619 0.00 0.00 0.00 3.41
4268 5061 5.786264 ATTTCTGATCATGGATTGGCTTC 57.214 39.130 0.00 0.00 0.00 3.86
4330 5123 9.458727 AGTTAAGTCACAAGAATGATGATCAAT 57.541 29.630 0.00 0.00 0.00 2.57
4339 5132 9.965824 AACCAAATTAGTTAAGTCACAAGAATG 57.034 29.630 0.00 0.00 0.00 2.67
4444 5237 0.246635 GCCGTTCTGCTGAAGGACTA 59.753 55.000 22.76 0.00 39.60 2.59
4507 5300 1.294659 GCTTGTTGTCCTCTCTGCGG 61.295 60.000 0.00 0.00 0.00 5.69
4567 5360 0.958091 CCTGTTTGCCAATCAACCGA 59.042 50.000 0.00 0.00 33.73 4.69
4721 5514 4.201657 CAGCATTCTGTCCATCCATTGTA 58.798 43.478 0.00 0.00 35.61 2.41
4793 5586 2.007608 GGTGATGGCGAACCTAGAAAC 58.992 52.381 0.00 0.00 36.63 2.78
4928 5721 8.192774 GCATCAAAATAATGTGATCTTTCCTCA 58.807 33.333 0.00 0.00 32.06 3.86
5274 6067 1.975660 GGCACCTAACACCAGACAAA 58.024 50.000 0.00 0.00 0.00 2.83
5509 6302 3.287222 CTCCAAAAGAACAGAACCCACA 58.713 45.455 0.00 0.00 0.00 4.17
5719 6637 3.228453 AGTAACTTCTTCACCCTCGACA 58.772 45.455 0.00 0.00 0.00 4.35
5749 6667 3.306294 CCTTTTGTTTGGATTCAGAGGCC 60.306 47.826 0.00 0.00 0.00 5.19
6236 10706 3.181434 ACACCAATTCTTAAGGTCCAGCA 60.181 43.478 1.85 0.00 32.15 4.41
6248 10718 4.098914 TCCTAACAAGCACACCAATTCT 57.901 40.909 0.00 0.00 0.00 2.40
6289 10759 1.073964 CAAGTCTGACACTCGGCATG 58.926 55.000 10.88 0.00 32.30 4.06
6294 10764 2.814919 AGGTACTCAAGTCTGACACTCG 59.185 50.000 10.88 0.00 32.30 4.18
6380 10855 1.012086 CTGAAGTGGGACATCATGCG 58.988 55.000 0.00 0.00 44.52 4.73
6383 10859 1.352017 TGCACTGAAGTGGGACATCAT 59.648 47.619 12.20 0.00 45.72 2.45
6394 10870 2.793933 GCATGTAGCATTGCACTGAAG 58.206 47.619 11.91 0.00 44.79 3.02
6473 11203 7.146648 GGAAATTCTCCTTAGGATACTGTACG 58.853 42.308 0.00 0.00 44.89 3.67
6685 11416 1.997874 ATCCTCCAGACCAGGCACC 60.998 63.158 0.00 0.00 0.00 5.01
6700 11431 4.070716 CTGCTTCCTGACCATTATCATCC 58.929 47.826 0.00 0.00 0.00 3.51
6748 11479 3.365969 CCCGGTATTGTTTTGAACTGCTC 60.366 47.826 0.00 0.00 0.00 4.26
6802 11533 2.441750 AGTGCCTTGTCCCTTCACTTTA 59.558 45.455 0.00 0.00 34.69 1.85
6832 11563 4.999950 GGATCAACAAGAGTCACAATGAGT 59.000 41.667 0.00 0.00 31.62 3.41
6952 11683 1.746615 CAGACCATGCAGAACCCCG 60.747 63.158 0.00 0.00 0.00 5.73
6964 11695 3.507162 TGGAAAGATCAAAGCAGACCA 57.493 42.857 0.00 0.00 0.00 4.02
6965 11696 4.012374 TCATGGAAAGATCAAAGCAGACC 58.988 43.478 0.00 0.00 0.00 3.85
7058 11790 9.554395 TGACTAATTCTGAGTGATTGTGTAAAA 57.446 29.630 0.00 0.00 0.00 1.52
7113 11845 6.734532 TGGAGGGTCTAAACACTACTGTATA 58.265 40.000 0.00 0.00 40.81 1.47
7119 11851 4.820894 ACATGGAGGGTCTAAACACTAC 57.179 45.455 0.00 0.00 40.02 2.73
7152 11907 5.853936 TGTATAGCATTTCCGAAGCTACAT 58.146 37.500 4.65 0.00 42.94 2.29
7157 11912 5.932303 TCCTAATGTATAGCATTTCCGAAGC 59.068 40.000 6.05 0.00 44.82 3.86
7161 11916 7.672983 ACAATCCTAATGTATAGCATTTCCG 57.327 36.000 6.05 0.00 44.82 4.30
7172 11927 7.534723 ACTAGCGGATAACAATCCTAATGTA 57.465 36.000 3.10 0.00 38.57 2.29
7173 11928 6.420913 ACTAGCGGATAACAATCCTAATGT 57.579 37.500 3.10 0.00 38.57 2.71
7175 11930 6.270231 AGGAACTAGCGGATAACAATCCTAAT 59.730 38.462 3.10 0.00 36.02 1.73
7198 11955 7.551617 CCACAAAACATACTTAAGGTAGGTAGG 59.448 40.741 7.53 0.00 43.42 3.18
7201 11958 6.713450 CACCACAAAACATACTTAAGGTAGGT 59.287 38.462 7.53 2.43 45.69 3.08
7205 11962 9.969001 ATATACACCACAAAACATACTTAAGGT 57.031 29.630 7.53 0.00 0.00 3.50
7211 11968 9.120538 GAATCCATATACACCACAAAACATACT 57.879 33.333 0.00 0.00 0.00 2.12
7212 11969 9.120538 AGAATCCATATACACCACAAAACATAC 57.879 33.333 0.00 0.00 0.00 2.39
7214 11971 7.833682 TCAGAATCCATATACACCACAAAACAT 59.166 33.333 0.00 0.00 0.00 2.71
7216 11973 7.201732 CCTCAGAATCCATATACACCACAAAAC 60.202 40.741 0.00 0.00 0.00 2.43
7218 11975 6.356556 CCTCAGAATCCATATACACCACAAA 58.643 40.000 0.00 0.00 0.00 2.83
7219 11976 5.163205 CCCTCAGAATCCATATACACCACAA 60.163 44.000 0.00 0.00 0.00 3.33
7220 11977 4.347876 CCCTCAGAATCCATATACACCACA 59.652 45.833 0.00 0.00 0.00 4.17
7221 11978 4.348168 ACCCTCAGAATCCATATACACCAC 59.652 45.833 0.00 0.00 0.00 4.16
7224 11981 7.038302 TCCATAACCCTCAGAATCCATATACAC 60.038 40.741 0.00 0.00 0.00 2.90
7225 11982 7.022496 TCCATAACCCTCAGAATCCATATACA 58.978 38.462 0.00 0.00 0.00 2.29
7226 11983 7.496346 TCCATAACCCTCAGAATCCATATAC 57.504 40.000 0.00 0.00 0.00 1.47
7227 11984 8.383175 GTTTCCATAACCCTCAGAATCCATATA 58.617 37.037 0.00 0.00 0.00 0.86
7240 11997 3.517901 TGAGACGATGTTTCCATAACCCT 59.482 43.478 0.00 0.00 0.00 4.34
7270 12027 4.096682 AGACGTCAGATAAACCAGAGTAGC 59.903 45.833 19.50 0.00 0.00 3.58
7271 12028 5.354513 TCAGACGTCAGATAAACCAGAGTAG 59.645 44.000 19.50 0.00 0.00 2.57
7276 12033 4.442375 ACTCAGACGTCAGATAAACCAG 57.558 45.455 19.50 4.02 0.00 4.00
7279 12036 7.870588 AAAGTAACTCAGACGTCAGATAAAC 57.129 36.000 19.50 12.38 0.00 2.01
7280 12037 8.761497 CAAAAAGTAACTCAGACGTCAGATAAA 58.239 33.333 19.50 0.37 0.00 1.40
7283 12040 6.513180 TCAAAAAGTAACTCAGACGTCAGAT 58.487 36.000 19.50 4.61 0.00 2.90
7285 12042 5.175856 CCTCAAAAAGTAACTCAGACGTCAG 59.824 44.000 19.50 10.43 0.00 3.51
7287 12044 5.048507 ACCTCAAAAAGTAACTCAGACGTC 58.951 41.667 7.70 7.70 0.00 4.34
7288 12045 5.019785 ACCTCAAAAAGTAACTCAGACGT 57.980 39.130 0.00 0.00 0.00 4.34
7289 12046 4.148348 CGACCTCAAAAAGTAACTCAGACG 59.852 45.833 0.00 0.00 0.00 4.18
7290 12047 5.175308 GTCGACCTCAAAAAGTAACTCAGAC 59.825 44.000 3.51 0.00 0.00 3.51
7292 12049 4.148348 CGTCGACCTCAAAAAGTAACTCAG 59.852 45.833 10.58 0.00 0.00 3.35
7294 12051 4.047142 ACGTCGACCTCAAAAAGTAACTC 58.953 43.478 10.58 0.00 0.00 3.01
7295 12052 3.800506 CACGTCGACCTCAAAAAGTAACT 59.199 43.478 10.58 0.00 0.00 2.24
7297 12054 2.540931 GCACGTCGACCTCAAAAAGTAA 59.459 45.455 10.58 0.00 0.00 2.24
7299 12056 0.935196 GCACGTCGACCTCAAAAAGT 59.065 50.000 10.58 0.00 0.00 2.66
7300 12057 0.111266 CGCACGTCGACCTCAAAAAG 60.111 55.000 10.58 0.00 41.67 2.27
7315 12072 8.338259 ACTGAATTCATTGAATATAACTCGCAC 58.662 33.333 8.96 0.00 31.46 5.34
7343 12100 8.614814 AGCTGGGATAGGAAATAATGCTAATAA 58.385 33.333 0.00 0.00 35.41 1.40
7344 12101 8.162848 AGCTGGGATAGGAAATAATGCTAATA 57.837 34.615 0.00 0.00 35.41 0.98
7345 12102 7.037342 AGCTGGGATAGGAAATAATGCTAAT 57.963 36.000 0.00 0.00 35.41 1.73
7347 12104 6.454223 AAGCTGGGATAGGAAATAATGCTA 57.546 37.500 0.00 0.00 36.30 3.49
7349 12106 6.476378 TCTAAGCTGGGATAGGAAATAATGC 58.524 40.000 0.00 0.00 0.00 3.56
7350 12107 7.066766 GCATCTAAGCTGGGATAGGAAATAATG 59.933 40.741 0.00 0.00 0.00 1.90
7351 12108 7.115414 GCATCTAAGCTGGGATAGGAAATAAT 58.885 38.462 0.00 0.00 0.00 1.28
7353 12110 5.547666 TGCATCTAAGCTGGGATAGGAAATA 59.452 40.000 0.00 0.00 34.99 1.40
7354 12111 4.352001 TGCATCTAAGCTGGGATAGGAAAT 59.648 41.667 0.00 0.00 34.99 2.17
7356 12113 3.317406 TGCATCTAAGCTGGGATAGGAA 58.683 45.455 0.00 0.00 34.99 3.36
7357 12114 2.976440 TGCATCTAAGCTGGGATAGGA 58.024 47.619 0.00 0.00 34.99 2.94
7358 12115 3.996921 ATGCATCTAAGCTGGGATAGG 57.003 47.619 0.00 0.00 34.99 2.57
7359 12116 9.053840 CATAAATATGCATCTAAGCTGGGATAG 57.946 37.037 0.19 0.00 34.99 2.08
7360 12117 8.551440 ACATAAATATGCATCTAAGCTGGGATA 58.449 33.333 0.19 0.00 37.19 2.59
7361 12118 7.338703 CACATAAATATGCATCTAAGCTGGGAT 59.661 37.037 0.19 0.00 37.19 3.85
7362 12119 6.656270 CACATAAATATGCATCTAAGCTGGGA 59.344 38.462 0.19 0.00 37.19 4.37
7363 12120 6.432162 ACACATAAATATGCATCTAAGCTGGG 59.568 38.462 0.19 0.00 37.19 4.45
7364 12121 7.444629 ACACATAAATATGCATCTAAGCTGG 57.555 36.000 0.19 0.00 37.19 4.85
7365 12122 9.177304 CAAACACATAAATATGCATCTAAGCTG 57.823 33.333 0.19 0.00 37.19 4.24
7366 12123 8.355169 CCAAACACATAAATATGCATCTAAGCT 58.645 33.333 0.19 0.00 37.19 3.74
7367 12124 7.596248 CCCAAACACATAAATATGCATCTAAGC 59.404 37.037 0.19 0.00 37.19 3.09
7368 12125 8.849168 TCCCAAACACATAAATATGCATCTAAG 58.151 33.333 0.19 0.00 37.19 2.18
7369 12126 8.759481 TCCCAAACACATAAATATGCATCTAA 57.241 30.769 0.19 0.00 37.19 2.10
7387 12147 5.125578 GGGATGAAGTTGACTATTCCCAAAC 59.874 44.000 15.63 0.00 37.94 2.93
7391 12151 4.779993 AGGGATGAAGTTGACTATTCCC 57.220 45.455 13.87 13.87 38.14 3.97
7396 12156 5.189736 AGCATGTTAGGGATGAAGTTGACTA 59.810 40.000 0.00 0.00 0.00 2.59
7402 12162 4.458397 CATGAGCATGTTAGGGATGAAGT 58.542 43.478 2.34 0.00 34.23 3.01
7415 12181 3.776340 TGCAAACATTAGCATGAGCATG 58.224 40.909 6.11 6.11 45.49 4.06
7417 12183 2.164827 CCTGCAAACATTAGCATGAGCA 59.835 45.455 0.00 0.00 45.49 4.26
7430 12233 1.005748 GCAAGCCCTTCCTGCAAAC 60.006 57.895 0.00 0.00 0.00 2.93
7432 12235 2.601367 GGCAAGCCCTTCCTGCAA 60.601 61.111 0.00 0.00 0.00 4.08
7640 12456 0.729116 CTAAACCATGACTGCGCCAG 59.271 55.000 4.18 4.99 37.52 4.85
7912 12758 2.434336 ACAACAACAGAGGACAGCAGTA 59.566 45.455 0.00 0.00 0.00 2.74
7914 12760 1.959042 ACAACAACAGAGGACAGCAG 58.041 50.000 0.00 0.00 0.00 4.24
7919 12765 6.619801 AGAAACATAACAACAACAGAGGAC 57.380 37.500 0.00 0.00 0.00 3.85
7924 12770 7.737395 TGCAAAAAGAAACATAACAACAACAG 58.263 30.769 0.00 0.00 0.00 3.16
7942 12788 4.576216 TCTTTACCAGCGAATGCAAAAA 57.424 36.364 0.00 0.00 46.23 1.94
7971 12817 4.248859 GCAGATTACATGCGGATGAGTAT 58.751 43.478 24.66 12.61 33.31 2.12
8028 12874 4.717233 ACATAGAGAGCTCACTGACTTG 57.283 45.455 22.21 15.63 0.00 3.16
8070 12916 0.458543 ACGCGCAACAGGTCATCTAG 60.459 55.000 5.73 0.00 0.00 2.43
8071 12917 0.812549 TACGCGCAACAGGTCATCTA 59.187 50.000 5.73 0.00 0.00 1.98
8072 12918 0.037697 TTACGCGCAACAGGTCATCT 60.038 50.000 5.73 0.00 0.00 2.90
8073 12919 0.793861 TTTACGCGCAACAGGTCATC 59.206 50.000 5.73 0.00 0.00 2.92
8074 12920 0.796312 CTTTACGCGCAACAGGTCAT 59.204 50.000 5.73 0.00 0.00 3.06
8075 12921 1.225376 CCTTTACGCGCAACAGGTCA 61.225 55.000 5.73 0.00 0.00 4.02
8076 12922 1.495951 CCTTTACGCGCAACAGGTC 59.504 57.895 5.73 0.00 0.00 3.85
8077 12923 2.613506 GCCTTTACGCGCAACAGGT 61.614 57.895 5.73 0.00 0.00 4.00
8078 12924 2.175811 GCCTTTACGCGCAACAGG 59.824 61.111 5.73 10.71 0.00 4.00
8079 12925 2.175811 GGCCTTTACGCGCAACAG 59.824 61.111 5.73 0.00 0.00 3.16
8080 12926 3.718097 CGGCCTTTACGCGCAACA 61.718 61.111 5.73 0.00 0.00 3.33
8081 12927 3.362851 CTCGGCCTTTACGCGCAAC 62.363 63.158 5.73 0.00 0.00 4.17
8082 12928 3.115892 CTCGGCCTTTACGCGCAA 61.116 61.111 5.73 0.00 0.00 4.85
8083 12929 4.367023 ACTCGGCCTTTACGCGCA 62.367 61.111 5.73 0.00 0.00 6.09
8084 12930 3.849953 CACTCGGCCTTTACGCGC 61.850 66.667 5.73 0.00 0.00 6.86
8085 12931 0.733566 TTACACTCGGCCTTTACGCG 60.734 55.000 3.53 3.53 0.00 6.01
8089 12935 4.748277 ATTAGCTTACACTCGGCCTTTA 57.252 40.909 0.00 0.00 0.00 1.85
8115 12961 7.912056 ACAATATATTAATGCACGCTCTCAT 57.088 32.000 0.00 0.00 0.00 2.90
8186 13032 8.121305 ACATAACTTAGTGCATCATTTCCAAA 57.879 30.769 0.00 0.00 0.00 3.28
8207 13054 6.897966 AGATCACAAGAGTCCTTTCCTACATA 59.102 38.462 0.00 0.00 0.00 2.29
8299 13146 8.394121 GTGCTTTTGAAACAACCATGATAAAAA 58.606 29.630 0.00 0.00 0.00 1.94
8300 13147 7.550551 TGTGCTTTTGAAACAACCATGATAAAA 59.449 29.630 0.00 0.00 0.00 1.52
8301 13148 7.010923 GTGTGCTTTTGAAACAACCATGATAAA 59.989 33.333 0.00 0.00 0.00 1.40
8302 13149 6.478344 GTGTGCTTTTGAAACAACCATGATAA 59.522 34.615 0.00 0.00 0.00 1.75
8303 13150 5.982516 GTGTGCTTTTGAAACAACCATGATA 59.017 36.000 0.00 0.00 0.00 2.15
8304 13151 4.810491 GTGTGCTTTTGAAACAACCATGAT 59.190 37.500 0.00 0.00 0.00 2.45
8305 13152 4.081752 AGTGTGCTTTTGAAACAACCATGA 60.082 37.500 0.00 0.00 0.00 3.07
8306 13153 4.183101 AGTGTGCTTTTGAAACAACCATG 58.817 39.130 0.00 0.00 0.00 3.66
8307 13154 4.470334 AGTGTGCTTTTGAAACAACCAT 57.530 36.364 0.00 0.00 0.00 3.55
8308 13155 3.951775 AGTGTGCTTTTGAAACAACCA 57.048 38.095 0.00 0.00 0.00 3.67
8309 13156 4.494484 AGAAGTGTGCTTTTGAAACAACC 58.506 39.130 0.00 0.00 34.61 3.77
8310 13157 6.466308 AAAGAAGTGTGCTTTTGAAACAAC 57.534 33.333 0.00 0.00 34.61 3.32
8311 13158 8.770438 ATAAAAGAAGTGTGCTTTTGAAACAA 57.230 26.923 10.57 0.00 43.30 2.83
8312 13159 8.031864 TGATAAAAGAAGTGTGCTTTTGAAACA 58.968 29.630 10.57 4.33 43.30 2.83
8313 13160 8.406172 TGATAAAAGAAGTGTGCTTTTGAAAC 57.594 30.769 10.57 2.41 43.30 2.78
8314 13161 9.033481 CATGATAAAAGAAGTGTGCTTTTGAAA 57.967 29.630 10.57 0.00 43.30 2.69
8315 13162 7.652909 CCATGATAAAAGAAGTGTGCTTTTGAA 59.347 33.333 10.57 0.00 43.30 2.69
8316 13163 7.147312 CCATGATAAAAGAAGTGTGCTTTTGA 58.853 34.615 10.57 0.00 43.30 2.69
8317 13164 6.925165 ACCATGATAAAAGAAGTGTGCTTTTG 59.075 34.615 10.57 0.00 43.30 2.44
8318 13165 7.054491 ACCATGATAAAAGAAGTGTGCTTTT 57.946 32.000 0.00 0.00 44.90 2.27
8319 13166 6.655078 ACCATGATAAAAGAAGTGTGCTTT 57.345 33.333 0.00 0.00 37.18 3.51
8320 13167 6.040842 ACAACCATGATAAAAGAAGTGTGCTT 59.959 34.615 0.00 0.00 37.71 3.91
8321 13168 5.536161 ACAACCATGATAAAAGAAGTGTGCT 59.464 36.000 0.00 0.00 0.00 4.40
8322 13169 5.772521 ACAACCATGATAAAAGAAGTGTGC 58.227 37.500 0.00 0.00 0.00 4.57
8323 13170 9.743057 TTAAACAACCATGATAAAAGAAGTGTG 57.257 29.630 0.00 0.00 0.00 3.82
8348 13195 5.337578 AACTATTGTGTGGTGTGCTTTTT 57.662 34.783 0.00 0.00 0.00 1.94
8523 13372 1.162800 GGGAGTGCGCTTGATCATCC 61.163 60.000 9.73 0.00 0.00 3.51
8588 13437 0.391130 TGCAACGGGTCATCTAGCAC 60.391 55.000 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.