Multiple sequence alignment - TraesCS4D01G028300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G028300 chr4D 100.000 5347 0 0 1 5347 12549210 12543864 0.000000e+00 9875.0
1 TraesCS4D01G028300 chr4D 96.889 225 4 2 5124 5347 12535376 12535154 1.820000e-99 374.0
2 TraesCS4D01G028300 chr4D 98.276 116 2 0 3270 3385 12545831 12545716 2.520000e-48 204.0
3 TraesCS4D01G028300 chr4D 98.276 116 2 0 3380 3495 12545941 12545826 2.520000e-48 204.0
4 TraesCS4D01G028300 chr4D 100.000 31 0 0 4963 4993 12544218 12544188 2.080000e-04 58.4
5 TraesCS4D01G028300 chr4D 100.000 31 0 0 4993 5023 12544248 12544218 2.080000e-04 58.4
6 TraesCS4D01G028300 chr4B 93.114 2222 103 21 1203 3385 22902786 22900576 0.000000e+00 3210.0
7 TraesCS4D01G028300 chr4B 91.365 1077 54 19 3606 4649 22900433 22899363 0.000000e+00 1437.0
8 TraesCS4D01G028300 chr4B 88.569 1216 94 16 3 1205 22904042 22902859 0.000000e+00 1434.0
9 TraesCS4D01G028300 chr4B 92.609 230 13 3 3380 3609 22900690 22900465 1.440000e-85 327.0
10 TraesCS4D01G028300 chr4B 91.398 93 6 2 1247 1337 139763246 139763338 5.620000e-25 126.0
11 TraesCS4D01G028300 chr4B 89.888 89 6 3 1252 1338 487655537 487655624 1.570000e-20 111.0
12 TraesCS4D01G028300 chr4B 100.000 39 0 0 5037 5075 22899310 22899272 7.430000e-09 73.1
13 TraesCS4D01G028300 chr4A 93.678 1392 54 14 3380 4746 590090489 590091871 0.000000e+00 2052.0
14 TraesCS4D01G028300 chr4A 92.564 1439 81 14 1278 2706 590088405 590089827 0.000000e+00 2041.0
15 TraesCS4D01G028300 chr4A 89.296 710 44 16 2699 3385 590089903 590090603 0.000000e+00 861.0
16 TraesCS4D01G028300 chr4A 90.923 650 39 8 535 1176 590087763 590088400 0.000000e+00 856.0
17 TraesCS4D01G028300 chr4A 87.448 478 33 9 3 472 590087307 590087765 4.740000e-145 525.0
18 TraesCS4D01G028300 chr4A 91.071 224 12 4 5123 5345 590091887 590092103 4.050000e-76 296.0
19 TraesCS4D01G028300 chrUn 97.849 93 2 0 5255 5347 451988363 451988455 1.540000e-35 161.0
20 TraesCS4D01G028300 chr6D 93.103 87 4 2 1254 1338 84938457 84938543 5.620000e-25 126.0
21 TraesCS4D01G028300 chr6D 93.103 87 4 2 1255 1339 84938543 84938457 5.620000e-25 126.0
22 TraesCS4D01G028300 chr3A 92.941 85 5 1 1255 1338 213131896 213131980 7.270000e-24 122.0
23 TraesCS4D01G028300 chr7B 86.239 109 10 5 1233 1338 559531914 559532020 4.380000e-21 113.0
24 TraesCS4D01G028300 chr1D 90.000 90 5 2 1255 1340 41825897 41825986 4.380000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G028300 chr4D 12543864 12549210 5346 True 9875.000000 9875 100.0000 1 5347 1 chr4D.!!$R2 5346
1 TraesCS4D01G028300 chr4B 22899272 22904042 4770 True 1296.220000 3210 93.1314 3 5075 5 chr4B.!!$R1 5072
2 TraesCS4D01G028300 chr4A 590087307 590092103 4796 False 1105.166667 2052 90.8300 3 5345 6 chr4A.!!$F1 5342

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
624 661 1.045407 GGTAGCGGATGGATGTGGTA 58.955 55.0 0.0 0.0 0.00 3.25 F
2203 2334 0.031178 CAGGTTTGTGTTCAGCCTGC 59.969 55.0 0.0 0.0 39.58 4.85 F
4078 4491 0.037697 TTCGTGGTTGCTGTATCGCT 60.038 50.0 0.0 0.0 0.00 4.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2600 2741 1.285023 CTGCTGCTGAACAAGTGGC 59.715 57.895 0.0 0.0 0.00 5.01 R
4103 4519 0.617935 TCCCCGATCATCAGCAAACA 59.382 50.000 0.0 0.0 0.00 2.83 R
5230 5668 0.036105 ATCCTGCTCGTGTGCAATGA 60.036 50.000 0.0 0.0 42.83 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 92 1.135402 GCACGCCCTGAAAATCGAAAT 60.135 47.619 0.00 0.00 0.00 2.17
92 101 7.190871 GCCCTGAAAATCGAAATAAATCGTTA 58.809 34.615 0.00 0.00 43.19 3.18
93 102 7.376072 GCCCTGAAAATCGAAATAAATCGTTAG 59.624 37.037 0.00 0.00 43.19 2.34
101 114 9.983804 AATCGAAATAAATCGTTAGTTTTCCTC 57.016 29.630 0.00 0.00 43.19 3.71
104 117 9.474249 CGAAATAAATCGTTAGTTTTCCTCTTC 57.526 33.333 0.00 0.00 38.01 2.87
107 120 5.864628 AATCGTTAGTTTTCCTCTTCTGC 57.135 39.130 0.00 0.00 0.00 4.26
227 240 3.031013 CTCTTCTTCTTCCTCCTCCTCC 58.969 54.545 0.00 0.00 0.00 4.30
228 241 2.657459 TCTTCTTCTTCCTCCTCCTCCT 59.343 50.000 0.00 0.00 0.00 3.69
230 243 1.289530 TCTTCTTCCTCCTCCTCCTCC 59.710 57.143 0.00 0.00 0.00 4.30
231 244 1.290732 CTTCTTCCTCCTCCTCCTCCT 59.709 57.143 0.00 0.00 0.00 3.69
234 247 2.520741 CCTCCTCCTCCTCCTCGC 60.521 72.222 0.00 0.00 0.00 5.03
236 249 4.507916 TCCTCCTCCTCCTCGCCG 62.508 72.222 0.00 0.00 0.00 6.46
329 352 4.087892 CACCCTCCCCGCAGTCAG 62.088 72.222 0.00 0.00 0.00 3.51
399 436 3.733960 GGCGACCGGGCAAGAAAC 61.734 66.667 8.76 0.00 41.77 2.78
439 476 3.127533 GCTTCATTGCCGTCGCCT 61.128 61.111 0.00 0.00 0.00 5.52
452 489 1.471501 CGTCGCCTGATTCCAGATTCA 60.472 52.381 0.00 0.00 43.02 2.57
460 497 3.797039 TGATTCCAGATTCACGTGATCC 58.203 45.455 20.80 13.89 0.00 3.36
481 518 4.988598 CGAATCCGGCCCCCATCG 62.989 72.222 0.00 0.00 0.00 3.84
482 519 3.873812 GAATCCGGCCCCCATCGT 61.874 66.667 0.00 0.00 0.00 3.73
483 520 3.826926 GAATCCGGCCCCCATCGTC 62.827 68.421 0.00 0.00 0.00 4.20
555 592 2.686119 CGGAGGTAAGGAATTCCCCTA 58.314 52.381 21.22 10.13 34.95 3.53
581 618 1.134580 CCTGGACAGATTCGTCTGCAT 60.135 52.381 5.40 0.00 41.19 3.96
608 645 6.459670 TCTGTATTCGTGAGCAATAAGGTA 57.540 37.500 0.00 0.00 0.00 3.08
624 661 1.045407 GGTAGCGGATGGATGTGGTA 58.955 55.000 0.00 0.00 0.00 3.25
625 662 1.623811 GGTAGCGGATGGATGTGGTAT 59.376 52.381 0.00 0.00 0.00 2.73
626 663 2.353803 GGTAGCGGATGGATGTGGTATC 60.354 54.545 0.00 0.00 0.00 2.24
627 664 1.722034 AGCGGATGGATGTGGTATCT 58.278 50.000 0.00 0.00 0.00 1.98
628 665 1.345741 AGCGGATGGATGTGGTATCTG 59.654 52.381 0.00 0.00 0.00 2.90
708 746 4.154176 CCCATTTCCATTCATAGGATGCA 58.846 43.478 0.00 0.00 34.56 3.96
724 762 9.759259 CATAGGATGCACATTGTATTTAATACG 57.241 33.333 10.09 0.00 38.59 3.06
725 763 9.719355 ATAGGATGCACATTGTATTTAATACGA 57.281 29.630 7.42 7.42 38.59 3.43
726 764 8.087982 AGGATGCACATTGTATTTAATACGAG 57.912 34.615 10.39 5.71 38.59 4.18
746 784 3.332034 AGTACCCGTTAATGTCAGCAAC 58.668 45.455 0.00 0.00 0.00 4.17
887 927 3.449018 ACTGTGTTAGTAGGATGGCTCAG 59.551 47.826 0.00 0.00 38.04 3.35
889 929 3.195610 TGTGTTAGTAGGATGGCTCAGTG 59.804 47.826 0.00 0.00 0.00 3.66
936 976 5.602458 TGAGCATTTGATATTCTCGATGC 57.398 39.130 0.00 0.00 42.15 3.91
995 1035 5.533154 AGTGAAGGTATCCTCGAGTAATCAG 59.467 44.000 12.31 0.00 30.89 2.90
1020 1060 7.976734 AGTAAGATGGATAAGAAGAAAGACGTG 59.023 37.037 0.00 0.00 0.00 4.49
1101 1141 2.550180 GACAGAACAAAGCAACTCTCCC 59.450 50.000 0.00 0.00 0.00 4.30
1182 1227 5.410355 TGTTGTACTTACAGTCCCCATAC 57.590 43.478 0.00 0.00 37.52 2.39
1184 1229 3.700538 TGTACTTACAGTCCCCATACGT 58.299 45.455 0.00 0.00 0.00 3.57
1193 1238 4.281182 ACAGTCCCCATACGTTCATCTATC 59.719 45.833 0.00 0.00 0.00 2.08
1196 1241 3.832490 TCCCCATACGTTCATCTATCTGG 59.168 47.826 0.00 0.00 0.00 3.86
1197 1242 3.589988 CCCATACGTTCATCTATCTGGC 58.410 50.000 0.00 0.00 0.00 4.85
1233 1353 4.946784 ATATTTGACTTGCTTGGACGAC 57.053 40.909 0.00 0.00 0.00 4.34
1235 1355 1.581934 TTGACTTGCTTGGACGACAG 58.418 50.000 0.00 0.00 0.00 3.51
1262 1382 9.585369 AGTATACTTGGTATTTACTACTCCCTC 57.415 37.037 0.00 0.00 30.79 4.30
1263 1383 7.852550 ATACTTGGTATTTACTACTCCCTCC 57.147 40.000 0.00 0.00 0.00 4.30
1272 1392 1.622312 ACTACTCCCTCCGTTCCAAAC 59.378 52.381 0.00 0.00 0.00 2.93
1331 1459 3.495753 ACGACAAGTATTTTGGAACGGAC 59.504 43.478 0.00 0.00 0.00 4.79
1457 1587 5.672570 GCGGGCTAAAAATTTGGTTTATTGC 60.673 40.000 0.00 0.00 0.00 3.56
1680 1810 9.220906 AGGTACTCATAACCATCCTTATGTTTA 57.779 33.333 0.00 0.00 39.64 2.01
1975 2106 6.463049 GCCTCTATTGCACTTATTCCAGACTA 60.463 42.308 0.00 0.00 0.00 2.59
2106 2237 4.355543 TCGCATATTTTCTTCCAACAGC 57.644 40.909 0.00 0.00 0.00 4.40
2150 2281 8.592998 AGATCTCTGTATAACGTTTTAAAAGCG 58.407 33.333 5.91 16.21 0.00 4.68
2203 2334 0.031178 CAGGTTTGTGTTCAGCCTGC 59.969 55.000 0.00 0.00 39.58 4.85
2215 2346 3.275617 TCAGCCTGCCAACGTATTATT 57.724 42.857 0.00 0.00 0.00 1.40
2216 2347 4.409718 TCAGCCTGCCAACGTATTATTA 57.590 40.909 0.00 0.00 0.00 0.98
2445 2584 5.916318 TCCAATGAGCAAACAACTCAAATT 58.084 33.333 0.00 0.00 46.63 1.82
2467 2606 7.611213 ATTACCATTAGAAACCTGAACTTCG 57.389 36.000 0.00 0.00 0.00 3.79
2630 2771 5.639506 TGTTCAGCAGCAGTTATCTTTAGTC 59.360 40.000 0.00 0.00 0.00 2.59
2642 2783 8.247562 CAGTTATCTTTAGTCTGAGCACTTAGT 58.752 37.037 0.00 0.00 0.00 2.24
2667 2808 3.317711 TGGAACACATGCAACACTAAAGG 59.682 43.478 0.00 0.00 0.00 3.11
2668 2809 3.568007 GGAACACATGCAACACTAAAGGA 59.432 43.478 0.00 0.00 0.00 3.36
2678 2819 6.272318 TGCAACACTAAAGGAACATTTTCTG 58.728 36.000 0.00 0.00 31.71 3.02
2682 2823 7.277174 ACACTAAAGGAACATTTTCTGGAAG 57.723 36.000 0.00 0.00 31.71 3.46
2701 2842 7.281774 TCTGGAAGAAATCTGCATATTCTGAAC 59.718 37.037 8.89 4.75 42.31 3.18
2876 3100 4.418013 TGCAAGTCAATGGTTTATCACG 57.582 40.909 0.00 0.00 0.00 4.35
2885 3109 5.765677 TCAATGGTTTATCACGGTTTTCTCA 59.234 36.000 0.00 0.00 0.00 3.27
2900 3124 6.096846 CGGTTTTCTCATATTCCTTCCCATTT 59.903 38.462 0.00 0.00 0.00 2.32
2902 3126 7.417911 GGTTTTCTCATATTCCTTCCCATTTCC 60.418 40.741 0.00 0.00 0.00 3.13
2959 3183 4.782691 TGAGGTAAGAATCTTGTCCATCCA 59.217 41.667 16.71 10.70 0.00 3.41
2960 3184 5.429762 TGAGGTAAGAATCTTGTCCATCCAT 59.570 40.000 16.71 1.59 0.00 3.41
2961 3185 6.615316 TGAGGTAAGAATCTTGTCCATCCATA 59.385 38.462 16.71 0.00 0.00 2.74
2962 3186 7.293299 TGAGGTAAGAATCTTGTCCATCCATAT 59.707 37.037 16.71 0.52 0.00 1.78
2963 3187 8.050316 AGGTAAGAATCTTGTCCATCCATATT 57.950 34.615 16.71 0.00 0.00 1.28
2964 3188 7.941238 AGGTAAGAATCTTGTCCATCCATATTG 59.059 37.037 16.71 0.00 0.00 1.90
2965 3189 7.721399 GGTAAGAATCTTGTCCATCCATATTGT 59.279 37.037 5.64 0.00 0.00 2.71
2966 3190 9.125026 GTAAGAATCTTGTCCATCCATATTGTT 57.875 33.333 5.64 0.00 0.00 2.83
2967 3191 8.599624 AAGAATCTTGTCCATCCATATTGTTT 57.400 30.769 0.00 0.00 0.00 2.83
3004 3228 7.117236 CGTGTTTACCTGAGCTTATGAGTTTTA 59.883 37.037 0.00 0.00 0.00 1.52
3122 3346 9.174166 TCAGAAGAATTTTATTAAGGGCAGTAC 57.826 33.333 0.00 0.00 0.00 2.73
3136 3360 5.213519 AGGGCAGTACATGTAGTGGTATAA 58.786 41.667 32.04 0.00 37.07 0.98
3137 3361 5.070047 AGGGCAGTACATGTAGTGGTATAAC 59.930 44.000 32.04 18.91 37.07 1.89
3138 3362 5.070047 GGGCAGTACATGTAGTGGTATAACT 59.930 44.000 32.04 13.22 37.07 2.24
3140 3364 6.700520 GGCAGTACATGTAGTGGTATAACTTC 59.299 42.308 32.04 17.24 37.07 3.01
3144 3368 9.917887 AGTACATGTAGTGGTATAACTTCTACT 57.082 33.333 12.50 0.00 34.13 2.57
3145 3369 9.947669 GTACATGTAGTGGTATAACTTCTACTG 57.052 37.037 5.62 15.56 34.13 2.74
3150 3374 4.097589 AGTGGTATAACTTCTACTGTCGCC 59.902 45.833 0.00 0.00 0.00 5.54
3151 3375 4.097589 GTGGTATAACTTCTACTGTCGCCT 59.902 45.833 0.00 0.00 0.00 5.52
3152 3376 5.297776 GTGGTATAACTTCTACTGTCGCCTA 59.702 44.000 0.00 0.00 0.00 3.93
3153 3377 5.887598 TGGTATAACTTCTACTGTCGCCTAA 59.112 40.000 0.00 0.00 0.00 2.69
3165 3412 8.997323 TCTACTGTCGCCTAATATTACTTCTAC 58.003 37.037 0.00 0.00 0.00 2.59
3167 3414 7.649973 ACTGTCGCCTAATATTACTTCTACTG 58.350 38.462 0.00 0.00 0.00 2.74
3173 3420 6.294620 GCCTAATATTACTTCTACTGTCGCCT 60.295 42.308 0.00 0.00 0.00 5.52
3182 3429 7.820578 ACTTCTACTGTCGCCTAATATAACT 57.179 36.000 0.00 0.00 0.00 2.24
3187 3434 5.424757 ACTGTCGCCTAATATAACTTGCAA 58.575 37.500 0.00 0.00 0.00 4.08
3190 3437 5.293324 TGTCGCCTAATATAACTTGCAACAG 59.707 40.000 0.00 0.00 0.00 3.16
3200 3447 2.446435 ACTTGCAACAGTTGTGGAGTT 58.554 42.857 14.88 0.43 0.00 3.01
3253 3501 8.641541 TCAATATTGGAGTTCTTTTGAGCTTTT 58.358 29.630 15.36 0.00 40.15 2.27
3261 3509 6.333416 AGTTCTTTTGAGCTTTTGTTCCTTC 58.667 36.000 0.00 0.00 36.59 3.46
3330 3578 5.049405 CAGTGTGAATTTAGGAACCAGACAC 60.049 44.000 0.00 0.00 33.05 3.67
3381 3629 9.732130 GAAGCATTCTATTTCTAGGGATTATGT 57.268 33.333 0.00 0.00 43.23 2.29
3387 3635 9.944376 TTCTATTTCTAGGGATTATGTATGCAC 57.056 33.333 0.00 0.00 0.00 4.57
3388 3636 8.540388 TCTATTTCTAGGGATTATGTATGCACC 58.460 37.037 0.00 0.00 0.00 5.01
3389 3637 6.763715 TTTCTAGGGATTATGTATGCACCT 57.236 37.500 0.00 0.00 0.00 4.00
3390 3638 6.763715 TTCTAGGGATTATGTATGCACCTT 57.236 37.500 0.00 0.00 0.00 3.50
3391 3639 7.865530 TTCTAGGGATTATGTATGCACCTTA 57.134 36.000 0.00 0.00 0.00 2.69
3392 3640 7.865530 TCTAGGGATTATGTATGCACCTTAA 57.134 36.000 0.00 0.00 0.00 1.85
3393 3641 8.270137 TCTAGGGATTATGTATGCACCTTAAA 57.730 34.615 0.00 0.00 0.00 1.52
3394 3642 8.890472 TCTAGGGATTATGTATGCACCTTAAAT 58.110 33.333 0.00 0.00 0.00 1.40
3395 3643 7.765695 AGGGATTATGTATGCACCTTAAATG 57.234 36.000 0.00 0.00 0.00 2.32
3396 3644 7.297614 AGGGATTATGTATGCACCTTAAATGT 58.702 34.615 0.00 0.00 0.00 2.71
3397 3645 7.784550 AGGGATTATGTATGCACCTTAAATGTT 59.215 33.333 0.00 0.00 0.00 2.71
3398 3646 9.073475 GGGATTATGTATGCACCTTAAATGTTA 57.927 33.333 0.00 0.00 0.00 2.41
3408 3656 9.995003 ATGCACCTTAAATGTTAATTTTTCAGA 57.005 25.926 0.00 0.00 37.23 3.27
3409 3657 9.995003 TGCACCTTAAATGTTAATTTTTCAGAT 57.005 25.926 0.00 0.00 37.23 2.90
3416 3664 8.538409 AAATGTTAATTTTTCAGATGGAGTGC 57.462 30.769 0.00 0.00 31.76 4.40
3417 3665 6.647334 TGTTAATTTTTCAGATGGAGTGCA 57.353 33.333 0.00 0.00 0.00 4.57
3418 3666 6.680810 TGTTAATTTTTCAGATGGAGTGCAG 58.319 36.000 0.00 0.00 0.00 4.41
3419 3667 6.265196 TGTTAATTTTTCAGATGGAGTGCAGT 59.735 34.615 0.00 0.00 0.00 4.40
3420 3668 4.778534 ATTTTTCAGATGGAGTGCAGTG 57.221 40.909 0.00 0.00 0.00 3.66
3421 3669 2.936919 TTTCAGATGGAGTGCAGTGT 57.063 45.000 0.00 0.00 0.00 3.55
3422 3670 2.174363 TTCAGATGGAGTGCAGTGTG 57.826 50.000 0.00 0.00 0.00 3.82
3423 3671 1.341080 TCAGATGGAGTGCAGTGTGA 58.659 50.000 0.00 0.00 0.00 3.58
3424 3672 1.693606 TCAGATGGAGTGCAGTGTGAA 59.306 47.619 0.00 0.00 0.00 3.18
3425 3673 2.303890 TCAGATGGAGTGCAGTGTGAAT 59.696 45.455 0.00 0.00 0.00 2.57
3426 3674 3.079578 CAGATGGAGTGCAGTGTGAATT 58.920 45.455 0.00 0.00 0.00 2.17
3427 3675 3.504906 CAGATGGAGTGCAGTGTGAATTT 59.495 43.478 0.00 0.00 0.00 1.82
3428 3676 4.696877 CAGATGGAGTGCAGTGTGAATTTA 59.303 41.667 0.00 0.00 0.00 1.40
3429 3677 4.940046 AGATGGAGTGCAGTGTGAATTTAG 59.060 41.667 0.00 0.00 0.00 1.85
3430 3678 3.411446 TGGAGTGCAGTGTGAATTTAGG 58.589 45.455 0.00 0.00 0.00 2.69
3431 3679 3.072330 TGGAGTGCAGTGTGAATTTAGGA 59.928 43.478 0.00 0.00 0.00 2.94
3432 3680 4.072131 GGAGTGCAGTGTGAATTTAGGAA 58.928 43.478 0.00 0.00 0.00 3.36
3433 3681 4.083271 GGAGTGCAGTGTGAATTTAGGAAC 60.083 45.833 0.00 0.00 0.00 3.62
3434 3682 3.821033 AGTGCAGTGTGAATTTAGGAACC 59.179 43.478 0.00 0.00 0.00 3.62
3435 3683 3.568007 GTGCAGTGTGAATTTAGGAACCA 59.432 43.478 0.00 0.00 0.00 3.67
3436 3684 3.820467 TGCAGTGTGAATTTAGGAACCAG 59.180 43.478 0.00 0.00 0.00 4.00
3437 3685 4.072131 GCAGTGTGAATTTAGGAACCAGA 58.928 43.478 0.00 0.00 0.00 3.86
3438 3686 4.083271 GCAGTGTGAATTTAGGAACCAGAC 60.083 45.833 0.00 0.00 0.00 3.51
3439 3687 5.063204 CAGTGTGAATTTAGGAACCAGACA 58.937 41.667 0.00 0.00 0.00 3.41
3440 3688 5.049405 CAGTGTGAATTTAGGAACCAGACAC 60.049 44.000 0.00 0.00 33.05 3.67
3441 3689 4.819630 GTGTGAATTTAGGAACCAGACACA 59.180 41.667 0.00 0.00 33.11 3.72
3442 3690 5.298276 GTGTGAATTTAGGAACCAGACACAA 59.702 40.000 0.00 0.00 37.45 3.33
3443 3691 6.016276 GTGTGAATTTAGGAACCAGACACAAT 60.016 38.462 0.00 0.00 37.45 2.71
3444 3692 6.206634 TGTGAATTTAGGAACCAGACACAATC 59.793 38.462 0.00 0.00 33.82 2.67
3445 3693 6.206634 GTGAATTTAGGAACCAGACACAATCA 59.793 38.462 0.00 0.00 0.00 2.57
3446 3694 6.775142 TGAATTTAGGAACCAGACACAATCAA 59.225 34.615 0.00 0.00 0.00 2.57
3447 3695 7.451255 TGAATTTAGGAACCAGACACAATCAAT 59.549 33.333 0.00 0.00 0.00 2.57
3448 3696 7.781324 ATTTAGGAACCAGACACAATCAATT 57.219 32.000 0.00 0.00 0.00 2.32
3449 3697 7.595819 TTTAGGAACCAGACACAATCAATTT 57.404 32.000 0.00 0.00 0.00 1.82
3450 3698 7.595819 TTAGGAACCAGACACAATCAATTTT 57.404 32.000 0.00 0.00 0.00 1.82
3451 3699 6.484364 AGGAACCAGACACAATCAATTTTT 57.516 33.333 0.00 0.00 0.00 1.94
3452 3700 6.282930 AGGAACCAGACACAATCAATTTTTG 58.717 36.000 0.00 0.00 0.00 2.44
3453 3701 6.098124 AGGAACCAGACACAATCAATTTTTGA 59.902 34.615 5.17 0.00 45.01 2.69
3470 3718 9.859427 CAATTTTTGATTAGCCATAGAGAAACA 57.141 29.630 0.00 0.00 0.00 2.83
3580 3938 6.778559 GGTCCTACTCATCTAGTTTCCATAGT 59.221 42.308 0.00 0.00 39.80 2.12
3633 4027 2.276472 TGCGCATGGCTTTTTCATAC 57.724 45.000 5.66 0.00 44.05 2.39
3719 4124 7.576666 GCTGATCATTGACTCGATCCTACTTAT 60.577 40.741 0.00 0.00 37.77 1.73
3810 4215 1.321805 TTGGTGTGCTGTGCTGCTTT 61.322 50.000 0.00 0.00 0.00 3.51
3963 4374 9.528489 TGCCTTCTCATTTAAGGTAATAAACTT 57.472 29.630 3.97 0.00 44.56 2.66
3997 4410 7.487189 GCAAATGAGATGGCAATATTAGTATGC 59.513 37.037 0.00 0.00 0.00 3.14
4066 4479 1.770294 ATTGTTTGGTGGTTCGTGGT 58.230 45.000 0.00 0.00 0.00 4.16
4078 4491 0.037697 TTCGTGGTTGCTGTATCGCT 60.038 50.000 0.00 0.00 0.00 4.93
4103 4519 5.726980 TGGTAGGAGTAATACGTTTGTGT 57.273 39.130 0.00 0.00 0.00 3.72
4118 4534 3.541071 TTGTGTGTTTGCTGATGATCG 57.459 42.857 0.00 0.00 0.00 3.69
4120 4536 1.131126 GTGTGTTTGCTGATGATCGGG 59.869 52.381 3.07 0.00 0.00 5.14
4148 4564 4.344679 TGAAATTTGCAGTCCCAAGATTGT 59.655 37.500 0.00 0.00 32.52 2.71
4286 4703 3.271250 GCTTCTGCCCCTCAAATCA 57.729 52.632 0.00 0.00 0.00 2.57
4350 4767 8.740906 TCTCAAATGTTGGTAAAAAGTAACACA 58.259 29.630 0.00 0.00 36.05 3.72
4406 4828 2.032414 TGCGTTGTATAGAGCGATCG 57.968 50.000 11.69 11.69 0.00 3.69
4428 4854 4.084537 CGTCACTCATCGCTTTGTTTTACT 60.085 41.667 0.00 0.00 0.00 2.24
4468 4894 5.540911 CCATGTTTTCATAACTGCAAAGGT 58.459 37.500 0.00 0.00 38.64 3.50
4486 4912 7.714377 TGCAAAGGTTCATGATGTTGTATTTTT 59.286 29.630 0.00 0.00 0.00 1.94
4497 4923 5.606348 TGTTGTATTTTTCCCTTGTTGCT 57.394 34.783 0.00 0.00 0.00 3.91
4591 5017 5.305128 CCCCATAATGTTGCCTTGATTATGT 59.695 40.000 0.00 0.00 37.95 2.29
4611 5037 1.165270 GTCGCTTGTACCTGCCAATT 58.835 50.000 0.00 0.00 0.00 2.32
4612 5038 2.289756 TGTCGCTTGTACCTGCCAATTA 60.290 45.455 0.00 0.00 0.00 1.40
4613 5039 2.745281 GTCGCTTGTACCTGCCAATTAA 59.255 45.455 0.00 0.00 0.00 1.40
4614 5040 3.377172 GTCGCTTGTACCTGCCAATTAAT 59.623 43.478 0.00 0.00 0.00 1.40
4615 5041 3.376859 TCGCTTGTACCTGCCAATTAATG 59.623 43.478 0.00 0.00 0.00 1.90
4616 5042 3.447742 GCTTGTACCTGCCAATTAATGC 58.552 45.455 0.00 0.00 0.00 3.56
4617 5043 3.694734 CTTGTACCTGCCAATTAATGCG 58.305 45.455 0.00 0.00 0.00 4.73
4618 5044 2.020720 TGTACCTGCCAATTAATGCGG 58.979 47.619 0.59 0.59 0.00 5.69
4725 5162 1.466167 CGTCTGCAAGGAAACCATCTG 59.534 52.381 0.00 0.00 0.00 2.90
4727 5164 2.887152 GTCTGCAAGGAAACCATCTGTT 59.113 45.455 0.00 0.00 39.43 3.16
4732 5169 3.319122 GCAAGGAAACCATCTGTTGAAGT 59.681 43.478 0.00 0.00 37.23 3.01
4734 5171 5.284079 CAAGGAAACCATCTGTTGAAGTTG 58.716 41.667 0.00 0.00 37.23 3.16
4769 5206 9.699410 TCTCAAAAATTACATCATATTGAGGGT 57.301 29.630 11.39 0.00 41.44 4.34
4778 5215 6.341316 ACATCATATTGAGGGTATATGTCGC 58.659 40.000 0.00 0.00 37.29 5.19
4779 5216 6.155221 ACATCATATTGAGGGTATATGTCGCT 59.845 38.462 0.00 0.00 37.29 4.93
4780 5217 5.965922 TCATATTGAGGGTATATGTCGCTG 58.034 41.667 0.00 0.00 37.29 5.18
4781 5218 5.714806 TCATATTGAGGGTATATGTCGCTGA 59.285 40.000 0.00 0.00 37.29 4.26
4782 5219 4.955811 ATTGAGGGTATATGTCGCTGAA 57.044 40.909 4.56 3.61 0.00 3.02
4783 5220 4.322080 TTGAGGGTATATGTCGCTGAAG 57.678 45.455 4.56 0.00 0.00 3.02
4784 5221 3.562182 TGAGGGTATATGTCGCTGAAGA 58.438 45.455 4.56 0.00 0.00 2.87
4785 5222 3.958147 TGAGGGTATATGTCGCTGAAGAA 59.042 43.478 4.56 0.00 0.00 2.52
4786 5223 4.038042 TGAGGGTATATGTCGCTGAAGAAG 59.962 45.833 4.56 0.00 0.00 2.85
4787 5224 3.322254 AGGGTATATGTCGCTGAAGAAGG 59.678 47.826 0.00 0.00 0.00 3.46
4788 5225 3.060602 GGTATATGTCGCTGAAGAAGGC 58.939 50.000 0.00 0.00 0.00 4.35
4789 5226 2.988010 ATATGTCGCTGAAGAAGGCA 57.012 45.000 0.00 0.00 0.00 4.75
4790 5227 2.760634 TATGTCGCTGAAGAAGGCAA 57.239 45.000 0.00 0.00 0.00 4.52
4791 5228 2.119801 ATGTCGCTGAAGAAGGCAAT 57.880 45.000 0.00 0.00 0.00 3.56
4792 5229 1.159285 TGTCGCTGAAGAAGGCAATG 58.841 50.000 0.00 0.00 0.00 2.82
4793 5230 0.449388 GTCGCTGAAGAAGGCAATGG 59.551 55.000 0.00 0.00 0.00 3.16
4794 5231 0.677731 TCGCTGAAGAAGGCAATGGG 60.678 55.000 0.00 0.00 0.00 4.00
4795 5232 0.677731 CGCTGAAGAAGGCAATGGGA 60.678 55.000 0.00 0.00 0.00 4.37
4796 5233 1.549203 GCTGAAGAAGGCAATGGGAA 58.451 50.000 0.00 0.00 0.00 3.97
4797 5234 1.895131 GCTGAAGAAGGCAATGGGAAA 59.105 47.619 0.00 0.00 0.00 3.13
4798 5235 2.498885 GCTGAAGAAGGCAATGGGAAAT 59.501 45.455 0.00 0.00 0.00 2.17
4799 5236 3.055602 GCTGAAGAAGGCAATGGGAAATT 60.056 43.478 0.00 0.00 0.00 1.82
4800 5237 4.564199 GCTGAAGAAGGCAATGGGAAATTT 60.564 41.667 0.00 0.00 0.00 1.82
4801 5238 4.897140 TGAAGAAGGCAATGGGAAATTTG 58.103 39.130 0.00 0.00 0.00 2.32
4802 5239 3.986996 AGAAGGCAATGGGAAATTTGG 57.013 42.857 0.00 0.00 0.00 3.28
4803 5240 2.026915 AGAAGGCAATGGGAAATTTGGC 60.027 45.455 0.00 1.42 45.73 4.52
4805 5242 1.741528 GGCAATGGGAAATTTGGCTG 58.258 50.000 0.00 0.00 43.04 4.85
4806 5243 1.089112 GCAATGGGAAATTTGGCTGC 58.911 50.000 0.00 0.00 0.00 5.25
4807 5244 1.339342 GCAATGGGAAATTTGGCTGCT 60.339 47.619 0.00 0.00 0.00 4.24
4808 5245 2.624636 CAATGGGAAATTTGGCTGCTC 58.375 47.619 0.00 0.00 0.00 4.26
4809 5246 2.235402 CAATGGGAAATTTGGCTGCTCT 59.765 45.455 0.00 0.00 0.00 4.09
4810 5247 2.014010 TGGGAAATTTGGCTGCTCTT 57.986 45.000 0.00 0.00 0.00 2.85
4811 5248 2.328319 TGGGAAATTTGGCTGCTCTTT 58.672 42.857 0.00 0.00 0.00 2.52
4812 5249 2.705127 TGGGAAATTTGGCTGCTCTTTT 59.295 40.909 0.00 0.00 0.00 2.27
4813 5250 3.136260 TGGGAAATTTGGCTGCTCTTTTT 59.864 39.130 0.00 0.00 0.00 1.94
4814 5251 4.346418 TGGGAAATTTGGCTGCTCTTTTTA 59.654 37.500 0.00 0.00 0.00 1.52
4815 5252 4.931601 GGGAAATTTGGCTGCTCTTTTTAG 59.068 41.667 0.00 0.00 0.00 1.85
4816 5253 4.931601 GGAAATTTGGCTGCTCTTTTTAGG 59.068 41.667 0.00 0.00 0.00 2.69
4817 5254 5.511373 GGAAATTTGGCTGCTCTTTTTAGGT 60.511 40.000 0.00 0.00 0.00 3.08
4818 5255 5.551305 AATTTGGCTGCTCTTTTTAGGTT 57.449 34.783 0.00 0.00 0.00 3.50
4819 5256 5.551305 ATTTGGCTGCTCTTTTTAGGTTT 57.449 34.783 0.00 0.00 0.00 3.27
4820 5257 4.320608 TTGGCTGCTCTTTTTAGGTTTG 57.679 40.909 0.00 0.00 0.00 2.93
4821 5258 3.561143 TGGCTGCTCTTTTTAGGTTTGA 58.439 40.909 0.00 0.00 0.00 2.69
4822 5259 3.317993 TGGCTGCTCTTTTTAGGTTTGAC 59.682 43.478 0.00 0.00 0.00 3.18
4823 5260 3.317993 GGCTGCTCTTTTTAGGTTTGACA 59.682 43.478 0.00 0.00 0.00 3.58
4824 5261 4.540824 GCTGCTCTTTTTAGGTTTGACAG 58.459 43.478 0.00 0.00 0.00 3.51
4825 5262 4.557496 GCTGCTCTTTTTAGGTTTGACAGG 60.557 45.833 0.00 0.00 0.00 4.00
4826 5263 3.888930 TGCTCTTTTTAGGTTTGACAGGG 59.111 43.478 0.00 0.00 0.00 4.45
4827 5264 4.142038 GCTCTTTTTAGGTTTGACAGGGA 58.858 43.478 0.00 0.00 0.00 4.20
4828 5265 4.583073 GCTCTTTTTAGGTTTGACAGGGAA 59.417 41.667 0.00 0.00 0.00 3.97
4829 5266 5.278512 GCTCTTTTTAGGTTTGACAGGGAAG 60.279 44.000 0.00 0.00 0.00 3.46
4830 5267 6.008696 TCTTTTTAGGTTTGACAGGGAAGA 57.991 37.500 0.00 0.00 0.00 2.87
4831 5268 6.428295 TCTTTTTAGGTTTGACAGGGAAGAA 58.572 36.000 0.00 0.00 0.00 2.52
4832 5269 6.893005 TCTTTTTAGGTTTGACAGGGAAGAAA 59.107 34.615 0.00 0.00 0.00 2.52
4833 5270 7.563556 TCTTTTTAGGTTTGACAGGGAAGAAAT 59.436 33.333 0.00 0.00 0.00 2.17
4834 5271 6.894339 TTTAGGTTTGACAGGGAAGAAATC 57.106 37.500 0.00 0.00 0.00 2.17
4835 5272 4.731313 AGGTTTGACAGGGAAGAAATCT 57.269 40.909 0.00 0.00 0.00 2.40
4836 5273 4.657013 AGGTTTGACAGGGAAGAAATCTC 58.343 43.478 0.00 0.00 0.00 2.75
4837 5274 3.759086 GGTTTGACAGGGAAGAAATCTCC 59.241 47.826 0.00 0.00 0.00 3.71
4838 5275 3.721087 TTGACAGGGAAGAAATCTCCC 57.279 47.619 0.00 0.00 43.88 4.30
4839 5276 2.631384 TGACAGGGAAGAAATCTCCCA 58.369 47.619 10.46 0.00 45.90 4.37
4840 5277 3.192944 TGACAGGGAAGAAATCTCCCAT 58.807 45.455 10.46 0.00 45.90 4.00
4841 5278 4.370776 TGACAGGGAAGAAATCTCCCATA 58.629 43.478 10.46 0.00 45.90 2.74
4842 5279 4.164221 TGACAGGGAAGAAATCTCCCATAC 59.836 45.833 10.46 1.93 45.90 2.39
4843 5280 4.375313 ACAGGGAAGAAATCTCCCATACT 58.625 43.478 10.46 0.00 45.90 2.12
4844 5281 4.790790 ACAGGGAAGAAATCTCCCATACTT 59.209 41.667 10.46 0.00 45.90 2.24
4845 5282 5.254032 ACAGGGAAGAAATCTCCCATACTTT 59.746 40.000 10.46 0.00 45.90 2.66
4846 5283 5.825151 CAGGGAAGAAATCTCCCATACTTTC 59.175 44.000 10.46 0.00 45.90 2.62
4847 5284 5.103898 AGGGAAGAAATCTCCCATACTTTCC 60.104 44.000 10.46 0.00 45.90 3.13
4848 5285 5.103898 GGGAAGAAATCTCCCATACTTTCCT 60.104 44.000 2.91 0.00 43.06 3.36
4849 5286 6.427441 GGAAGAAATCTCCCATACTTTCCTT 58.573 40.000 0.00 0.00 0.00 3.36
4850 5287 6.544197 GGAAGAAATCTCCCATACTTTCCTTC 59.456 42.308 0.00 0.00 0.00 3.46
4851 5288 6.899892 AGAAATCTCCCATACTTTCCTTCT 57.100 37.500 0.00 0.00 0.00 2.85
4852 5289 7.996758 AGAAATCTCCCATACTTTCCTTCTA 57.003 36.000 0.00 0.00 0.00 2.10
4853 5290 7.797062 AGAAATCTCCCATACTTTCCTTCTAC 58.203 38.462 0.00 0.00 0.00 2.59
4854 5291 7.625682 AGAAATCTCCCATACTTTCCTTCTACT 59.374 37.037 0.00 0.00 0.00 2.57
4855 5292 6.739331 ATCTCCCATACTTTCCTTCTACTG 57.261 41.667 0.00 0.00 0.00 2.74
4856 5293 5.838955 TCTCCCATACTTTCCTTCTACTGA 58.161 41.667 0.00 0.00 0.00 3.41
4857 5294 6.261435 TCTCCCATACTTTCCTTCTACTGAA 58.739 40.000 0.00 0.00 0.00 3.02
4858 5295 6.381420 TCTCCCATACTTTCCTTCTACTGAAG 59.619 42.308 0.00 0.00 46.82 3.02
4859 5296 5.104900 TCCCATACTTTCCTTCTACTGAAGC 60.105 44.000 0.67 0.00 46.13 3.86
4860 5297 5.338381 CCCATACTTTCCTTCTACTGAAGCA 60.338 44.000 0.67 0.00 46.13 3.91
4861 5298 6.173339 CCATACTTTCCTTCTACTGAAGCAA 58.827 40.000 0.67 0.00 46.13 3.91
4862 5299 6.825721 CCATACTTTCCTTCTACTGAAGCAAT 59.174 38.462 0.67 0.00 46.13 3.56
4863 5300 7.011857 CCATACTTTCCTTCTACTGAAGCAATC 59.988 40.741 0.67 0.00 46.13 2.67
4864 5301 4.932200 ACTTTCCTTCTACTGAAGCAATCG 59.068 41.667 0.67 0.00 46.13 3.34
4865 5302 4.801330 TTCCTTCTACTGAAGCAATCGA 57.199 40.909 0.00 0.00 46.13 3.59
4866 5303 4.377839 TCCTTCTACTGAAGCAATCGAG 57.622 45.455 0.00 0.00 46.13 4.04
4867 5304 3.764434 TCCTTCTACTGAAGCAATCGAGT 59.236 43.478 0.00 0.00 46.13 4.18
4868 5305 3.862267 CCTTCTACTGAAGCAATCGAGTG 59.138 47.826 8.83 8.83 46.13 3.51
4869 5306 4.380973 CCTTCTACTGAAGCAATCGAGTGA 60.381 45.833 18.43 0.00 46.13 3.41
4870 5307 4.991153 TCTACTGAAGCAATCGAGTGAT 57.009 40.909 18.43 7.64 35.98 3.06
4871 5308 5.330455 TCTACTGAAGCAATCGAGTGATT 57.670 39.130 16.95 16.95 45.70 2.57
4872 5309 6.451064 TCTACTGAAGCAATCGAGTGATTA 57.549 37.500 16.96 0.00 42.94 1.75
4873 5310 6.499172 TCTACTGAAGCAATCGAGTGATTAG 58.501 40.000 16.96 15.29 42.94 1.73
4874 5311 5.330455 ACTGAAGCAATCGAGTGATTAGA 57.670 39.130 16.96 5.67 42.94 2.10
4875 5312 5.105752 ACTGAAGCAATCGAGTGATTAGAC 58.894 41.667 16.96 5.25 42.94 2.59
4876 5313 5.072040 TGAAGCAATCGAGTGATTAGACA 57.928 39.130 16.96 7.94 42.94 3.41
4877 5314 5.105063 TGAAGCAATCGAGTGATTAGACAG 58.895 41.667 16.96 0.00 42.94 3.51
4878 5315 4.991153 AGCAATCGAGTGATTAGACAGA 57.009 40.909 18.43 0.00 42.94 3.41
4879 5316 5.528043 AGCAATCGAGTGATTAGACAGAT 57.472 39.130 18.43 0.00 42.94 2.90
4880 5317 6.641169 AGCAATCGAGTGATTAGACAGATA 57.359 37.500 18.43 0.00 42.94 1.98
4881 5318 7.043961 AGCAATCGAGTGATTAGACAGATAA 57.956 36.000 18.43 0.00 42.94 1.75
4882 5319 7.492524 AGCAATCGAGTGATTAGACAGATAAA 58.507 34.615 18.43 0.00 42.94 1.40
4883 5320 7.981789 AGCAATCGAGTGATTAGACAGATAAAA 59.018 33.333 18.43 0.00 42.94 1.52
4884 5321 8.604035 GCAATCGAGTGATTAGACAGATAAAAA 58.396 33.333 18.43 0.00 42.94 1.94
4905 5342 5.948992 AAACAACAGAGATCTTAACAGCC 57.051 39.130 0.00 0.00 0.00 4.85
4906 5343 4.899352 ACAACAGAGATCTTAACAGCCT 57.101 40.909 0.00 0.00 0.00 4.58
4907 5344 5.234466 ACAACAGAGATCTTAACAGCCTT 57.766 39.130 0.00 0.00 0.00 4.35
4908 5345 5.241662 ACAACAGAGATCTTAACAGCCTTC 58.758 41.667 0.00 0.00 0.00 3.46
4909 5346 4.479786 ACAGAGATCTTAACAGCCTTCC 57.520 45.455 0.00 0.00 0.00 3.46
4910 5347 4.100373 ACAGAGATCTTAACAGCCTTCCT 58.900 43.478 0.00 0.00 0.00 3.36
4911 5348 4.161377 ACAGAGATCTTAACAGCCTTCCTC 59.839 45.833 0.00 0.00 0.00 3.71
4912 5349 4.405358 CAGAGATCTTAACAGCCTTCCTCT 59.595 45.833 0.00 0.00 0.00 3.69
4913 5350 5.029474 AGAGATCTTAACAGCCTTCCTCTT 58.971 41.667 0.00 0.00 0.00 2.85
4914 5351 5.487131 AGAGATCTTAACAGCCTTCCTCTTT 59.513 40.000 0.00 0.00 0.00 2.52
4915 5352 6.670027 AGAGATCTTAACAGCCTTCCTCTTTA 59.330 38.462 0.00 0.00 0.00 1.85
4916 5353 7.181125 AGAGATCTTAACAGCCTTCCTCTTTAA 59.819 37.037 0.00 0.00 0.00 1.52
4917 5354 7.106890 AGATCTTAACAGCCTTCCTCTTTAAC 58.893 38.462 0.00 0.00 0.00 2.01
4918 5355 5.557866 TCTTAACAGCCTTCCTCTTTAACC 58.442 41.667 0.00 0.00 0.00 2.85
4919 5356 5.309806 TCTTAACAGCCTTCCTCTTTAACCT 59.690 40.000 0.00 0.00 0.00 3.50
4920 5357 3.425162 ACAGCCTTCCTCTTTAACCTG 57.575 47.619 0.00 0.00 0.00 4.00
4921 5358 2.979678 ACAGCCTTCCTCTTTAACCTGA 59.020 45.455 0.00 0.00 0.00 3.86
4922 5359 3.589288 ACAGCCTTCCTCTTTAACCTGAT 59.411 43.478 0.00 0.00 0.00 2.90
4923 5360 3.944015 CAGCCTTCCTCTTTAACCTGATG 59.056 47.826 0.00 0.00 0.00 3.07
4924 5361 3.589288 AGCCTTCCTCTTTAACCTGATGT 59.411 43.478 0.00 0.00 0.00 3.06
4925 5362 3.942115 GCCTTCCTCTTTAACCTGATGTC 59.058 47.826 0.00 0.00 0.00 3.06
4926 5363 4.518249 CCTTCCTCTTTAACCTGATGTCC 58.482 47.826 0.00 0.00 0.00 4.02
4927 5364 4.226168 CCTTCCTCTTTAACCTGATGTCCT 59.774 45.833 0.00 0.00 0.00 3.85
4928 5365 4.826274 TCCTCTTTAACCTGATGTCCTG 57.174 45.455 0.00 0.00 0.00 3.86
4929 5366 3.519510 TCCTCTTTAACCTGATGTCCTGG 59.480 47.826 0.00 0.00 39.53 4.45
4930 5367 3.370953 CCTCTTTAACCTGATGTCCTGGG 60.371 52.174 0.00 0.00 38.11 4.45
4931 5368 2.026262 TCTTTAACCTGATGTCCTGGGC 60.026 50.000 0.00 0.00 38.11 5.36
4932 5369 0.251916 TTAACCTGATGTCCTGGGCG 59.748 55.000 0.00 0.00 38.11 6.13
4933 5370 2.252072 TAACCTGATGTCCTGGGCGC 62.252 60.000 0.00 0.00 38.11 6.53
4965 5402 1.227497 CTCCATGCCTCGCCTCTTC 60.227 63.158 0.00 0.00 0.00 2.87
4968 5405 1.880340 CATGCCTCGCCTCTTCGTC 60.880 63.158 0.00 0.00 0.00 4.20
4970 5407 4.117661 GCCTCGCCTCTTCGTCGT 62.118 66.667 0.00 0.00 0.00 4.34
4973 5410 4.415332 TCGCCTCTTCGTCGTGGC 62.415 66.667 8.89 8.89 39.52 5.01
4982 5419 2.047274 CGTCGTGGCATCAACCCT 60.047 61.111 0.00 0.00 0.00 4.34
4983 5420 2.100631 CGTCGTGGCATCAACCCTC 61.101 63.158 0.00 0.00 0.00 4.30
4984 5421 1.003839 GTCGTGGCATCAACCCTCA 60.004 57.895 0.00 0.00 0.00 3.86
4985 5422 0.392998 GTCGTGGCATCAACCCTCAT 60.393 55.000 0.00 0.00 0.00 2.90
4986 5423 0.107703 TCGTGGCATCAACCCTCATC 60.108 55.000 0.00 0.00 0.00 2.92
4987 5424 1.431488 CGTGGCATCAACCCTCATCG 61.431 60.000 0.00 0.00 0.00 3.84
4988 5425 1.097547 GTGGCATCAACCCTCATCGG 61.098 60.000 0.00 0.00 0.00 4.18
4989 5426 1.224592 GGCATCAACCCTCATCGGT 59.775 57.895 0.00 0.00 37.93 4.69
4990 5427 0.468226 GGCATCAACCCTCATCGGTA 59.532 55.000 0.00 0.00 33.98 4.02
4991 5428 1.541233 GGCATCAACCCTCATCGGTAG 60.541 57.143 0.00 0.00 33.98 3.18
4992 5429 1.871080 CATCAACCCTCATCGGTAGC 58.129 55.000 0.00 0.00 33.98 3.58
4993 5430 1.414181 CATCAACCCTCATCGGTAGCT 59.586 52.381 0.00 0.00 33.98 3.32
4994 5431 1.568504 TCAACCCTCATCGGTAGCTT 58.431 50.000 0.00 0.00 33.98 3.74
4995 5432 1.480954 TCAACCCTCATCGGTAGCTTC 59.519 52.381 0.00 0.00 33.98 3.86
4996 5433 0.460311 AACCCTCATCGGTAGCTTCG 59.540 55.000 0.00 0.00 33.98 3.79
4997 5434 0.683504 ACCCTCATCGGTAGCTTCGT 60.684 55.000 0.00 0.00 33.04 3.85
4998 5435 0.030908 CCCTCATCGGTAGCTTCGTC 59.969 60.000 0.00 0.00 0.00 4.20
4999 5436 0.317103 CCTCATCGGTAGCTTCGTCG 60.317 60.000 0.00 0.00 0.00 5.12
5000 5437 0.377554 CTCATCGGTAGCTTCGTCGT 59.622 55.000 0.00 0.00 0.00 4.34
5001 5438 0.098200 TCATCGGTAGCTTCGTCGTG 59.902 55.000 0.00 0.00 0.00 4.35
5002 5439 0.866061 CATCGGTAGCTTCGTCGTGG 60.866 60.000 0.00 0.00 0.00 4.94
5003 5440 2.609183 ATCGGTAGCTTCGTCGTGGC 62.609 60.000 0.00 0.00 0.00 5.01
5004 5441 2.260434 GGTAGCTTCGTCGTGGCA 59.740 61.111 12.72 0.00 0.00 4.92
5005 5442 1.153628 GGTAGCTTCGTCGTGGCAT 60.154 57.895 12.72 3.56 0.00 4.40
5006 5443 1.146358 GGTAGCTTCGTCGTGGCATC 61.146 60.000 12.72 6.55 0.00 3.91
5007 5444 0.457853 GTAGCTTCGTCGTGGCATCA 60.458 55.000 12.72 0.00 0.00 3.07
5008 5445 0.245266 TAGCTTCGTCGTGGCATCAA 59.755 50.000 12.72 0.00 0.00 2.57
5009 5446 1.132640 GCTTCGTCGTGGCATCAAC 59.867 57.895 0.00 0.00 0.00 3.18
5010 5447 1.787847 CTTCGTCGTGGCATCAACC 59.212 57.895 0.00 0.00 0.00 3.77
5011 5448 1.635663 CTTCGTCGTGGCATCAACCC 61.636 60.000 0.00 0.00 0.00 4.11
5012 5449 2.047274 CGTCGTGGCATCAACCCT 60.047 61.111 0.00 0.00 0.00 4.34
5013 5450 2.100631 CGTCGTGGCATCAACCCTC 61.101 63.158 0.00 0.00 0.00 4.30
5014 5451 1.003839 GTCGTGGCATCAACCCTCA 60.004 57.895 0.00 0.00 0.00 3.86
5015 5452 0.392998 GTCGTGGCATCAACCCTCAT 60.393 55.000 0.00 0.00 0.00 2.90
5016 5453 0.107703 TCGTGGCATCAACCCTCATC 60.108 55.000 0.00 0.00 0.00 2.92
5017 5454 1.431488 CGTGGCATCAACCCTCATCG 61.431 60.000 0.00 0.00 0.00 3.84
5018 5455 1.097547 GTGGCATCAACCCTCATCGG 61.098 60.000 0.00 0.00 0.00 4.18
5019 5456 1.224592 GGCATCAACCCTCATCGGT 59.775 57.895 0.00 0.00 37.93 4.69
5020 5457 0.468226 GGCATCAACCCTCATCGGTA 59.532 55.000 0.00 0.00 33.98 4.02
5021 5458 1.541233 GGCATCAACCCTCATCGGTAG 60.541 57.143 0.00 0.00 33.98 3.18
5022 5459 1.871080 CATCAACCCTCATCGGTAGC 58.129 55.000 0.00 0.00 33.98 3.58
5023 5460 0.389391 ATCAACCCTCATCGGTAGCG 59.611 55.000 8.29 8.29 33.98 4.26
5024 5461 1.227263 CAACCCTCATCGGTAGCGG 60.227 63.158 15.23 0.00 33.98 5.52
5025 5462 2.432300 AACCCTCATCGGTAGCGGG 61.432 63.158 15.23 9.66 40.79 6.13
5026 5463 4.301027 CCCTCATCGGTAGCGGGC 62.301 72.222 15.23 0.00 0.00 6.13
5027 5464 4.301027 CCTCATCGGTAGCGGGCC 62.301 72.222 15.23 0.00 0.00 5.80
5028 5465 3.227276 CTCATCGGTAGCGGGCCT 61.227 66.667 15.23 0.00 0.00 5.19
5029 5466 3.506059 CTCATCGGTAGCGGGCCTG 62.506 68.421 15.23 7.41 0.00 4.85
5030 5467 3.536917 CATCGGTAGCGGGCCTGA 61.537 66.667 18.31 0.00 0.00 3.86
5031 5468 2.762459 ATCGGTAGCGGGCCTGAA 60.762 61.111 18.31 0.00 0.00 3.02
5032 5469 2.140792 ATCGGTAGCGGGCCTGAAT 61.141 57.895 18.31 5.20 0.00 2.57
5033 5470 2.100879 ATCGGTAGCGGGCCTGAATC 62.101 60.000 18.31 0.94 0.00 2.52
5034 5471 2.797278 CGGTAGCGGGCCTGAATCT 61.797 63.158 18.31 5.48 0.00 2.40
5035 5472 1.527370 GGTAGCGGGCCTGAATCTT 59.473 57.895 18.31 0.00 0.00 2.40
5076 5513 3.807839 ATGGGTGCGGCATGCCTA 61.808 61.111 33.07 19.80 45.60 3.93
5077 5514 3.137385 ATGGGTGCGGCATGCCTAT 62.137 57.895 33.07 14.76 45.60 2.57
5078 5515 3.289834 GGGTGCGGCATGCCTATG 61.290 66.667 33.07 19.55 45.60 2.23
5079 5516 3.289834 GGTGCGGCATGCCTATGG 61.290 66.667 33.07 19.18 45.60 2.74
5080 5517 2.203195 GTGCGGCATGCCTATGGA 60.203 61.111 33.07 17.31 45.60 3.41
5081 5518 1.601759 GTGCGGCATGCCTATGGAT 60.602 57.895 33.07 0.00 45.60 3.41
5082 5519 1.302752 TGCGGCATGCCTATGGATC 60.303 57.895 33.07 13.65 45.60 3.36
5083 5520 2.042831 GCGGCATGCCTATGGATCC 61.043 63.158 33.07 4.20 37.76 3.36
5084 5521 1.377725 CGGCATGCCTATGGATCCC 60.378 63.158 33.07 4.15 34.79 3.85
5085 5522 1.845627 CGGCATGCCTATGGATCCCT 61.846 60.000 33.07 1.08 34.79 4.20
5086 5523 0.407139 GGCATGCCTATGGATCCCTT 59.593 55.000 29.98 0.00 34.79 3.95
5087 5524 1.615384 GGCATGCCTATGGATCCCTTC 60.615 57.143 29.98 0.00 34.79 3.46
5088 5525 1.615384 GCATGCCTATGGATCCCTTCC 60.615 57.143 9.90 0.00 45.69 3.46
5089 5526 1.991070 CATGCCTATGGATCCCTTCCT 59.009 52.381 9.90 0.00 45.68 3.36
5090 5527 1.438469 TGCCTATGGATCCCTTCCTG 58.562 55.000 9.90 0.00 45.68 3.86
5091 5528 1.061424 TGCCTATGGATCCCTTCCTGA 60.061 52.381 9.90 0.00 45.68 3.86
5092 5529 2.057922 GCCTATGGATCCCTTCCTGAA 58.942 52.381 9.90 0.00 45.68 3.02
5093 5530 2.646798 GCCTATGGATCCCTTCCTGAAT 59.353 50.000 9.90 0.00 45.68 2.57
5094 5531 3.308046 GCCTATGGATCCCTTCCTGAATC 60.308 52.174 9.90 0.00 45.68 2.52
5095 5532 3.912528 CCTATGGATCCCTTCCTGAATCA 59.087 47.826 9.90 0.00 45.68 2.57
5096 5533 3.872459 ATGGATCCCTTCCTGAATCAC 57.128 47.619 9.90 0.00 45.68 3.06
5097 5534 1.846439 TGGATCCCTTCCTGAATCACC 59.154 52.381 9.90 0.00 45.68 4.02
5098 5535 1.846439 GGATCCCTTCCTGAATCACCA 59.154 52.381 0.00 0.00 41.78 4.17
5099 5536 2.422093 GGATCCCTTCCTGAATCACCAC 60.422 54.545 0.00 0.00 41.78 4.16
5100 5537 1.741028 TCCCTTCCTGAATCACCACA 58.259 50.000 0.00 0.00 0.00 4.17
5101 5538 2.278245 TCCCTTCCTGAATCACCACAT 58.722 47.619 0.00 0.00 0.00 3.21
5102 5539 2.025981 TCCCTTCCTGAATCACCACATG 60.026 50.000 0.00 0.00 0.00 3.21
5103 5540 2.025981 CCCTTCCTGAATCACCACATGA 60.026 50.000 0.00 0.00 43.13 3.07
5104 5541 3.561960 CCCTTCCTGAATCACCACATGAA 60.562 47.826 0.00 0.00 41.93 2.57
5105 5542 4.081406 CCTTCCTGAATCACCACATGAAA 58.919 43.478 0.00 0.00 41.93 2.69
5106 5543 4.082571 CCTTCCTGAATCACCACATGAAAC 60.083 45.833 0.00 0.00 41.93 2.78
5107 5544 4.097551 TCCTGAATCACCACATGAAACA 57.902 40.909 0.00 0.00 41.93 2.83
5108 5545 4.665451 TCCTGAATCACCACATGAAACAT 58.335 39.130 0.00 0.00 41.93 2.71
5109 5546 5.078949 TCCTGAATCACCACATGAAACATT 58.921 37.500 0.00 0.00 41.93 2.71
5110 5547 5.539574 TCCTGAATCACCACATGAAACATTT 59.460 36.000 0.00 0.00 41.93 2.32
5111 5548 5.636121 CCTGAATCACCACATGAAACATTTG 59.364 40.000 0.00 0.00 41.93 2.32
5112 5549 6.159299 TGAATCACCACATGAAACATTTGT 57.841 33.333 0.00 0.00 41.93 2.83
5113 5550 6.580788 TGAATCACCACATGAAACATTTGTT 58.419 32.000 0.00 0.00 41.93 2.83
5145 5582 8.626576 CGTGTGTTATTGTGAAATTATTGACAC 58.373 33.333 8.00 8.00 32.16 3.67
5146 5583 9.457110 GTGTGTTATTGTGAAATTATTGACACA 57.543 29.630 11.83 11.83 40.64 3.72
5156 5593 7.807907 GTGAAATTATTGACACAAGTAACCAGG 59.192 37.037 9.42 0.00 34.05 4.45
5181 5618 5.301298 TCAATCACCACATGAAACATTGACA 59.699 36.000 0.00 0.00 41.93 3.58
5182 5619 5.787953 ATCACCACATGAAACATTGACAA 57.212 34.783 0.00 0.00 41.93 3.18
5191 5628 9.285770 CACATGAAACATTGACAATTAGATCTG 57.714 33.333 5.18 0.00 0.00 2.90
5199 5637 0.249868 CAATTAGATCTGCCCGGCGA 60.250 55.000 9.30 5.67 0.00 5.54
5220 5658 1.734655 GCCTATGGATCCCTTCCTGA 58.265 55.000 9.90 0.00 45.68 3.86
5230 5668 4.570719 GGATCCCTTCCTGAATCCAAACTT 60.571 45.833 0.00 0.00 41.78 2.66
5287 5725 3.117701 TCAATCAGGGTCAAGGTTTGTGA 60.118 43.478 0.00 0.00 0.00 3.58
5289 5727 3.374042 TCAGGGTCAAGGTTTGTGAAA 57.626 42.857 0.00 0.00 0.00 2.69
5307 5745 3.118038 TGAAATATACTCCACCACTGCCC 60.118 47.826 0.00 0.00 0.00 5.36
5308 5746 1.435256 ATATACTCCACCACTGCCCC 58.565 55.000 0.00 0.00 0.00 5.80
5309 5747 0.043485 TATACTCCACCACTGCCCCA 59.957 55.000 0.00 0.00 0.00 4.96
5310 5748 0.624500 ATACTCCACCACTGCCCCAT 60.625 55.000 0.00 0.00 0.00 4.00
5311 5749 1.271840 TACTCCACCACTGCCCCATC 61.272 60.000 0.00 0.00 0.00 3.51
5312 5750 3.338250 TCCACCACTGCCCCATCC 61.338 66.667 0.00 0.00 0.00 3.51
5336 5774 0.694771 TCACCATCTGCTTGCTTCCT 59.305 50.000 0.00 0.00 0.00 3.36
5345 5783 2.598394 TTGCTTCCTGCTGGTGGC 60.598 61.111 9.73 14.38 43.37 5.01
5346 5784 4.666253 TGCTTCCTGCTGGTGGCC 62.666 66.667 19.72 0.00 43.37 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.356527 CGCGTACACAAGGGTTAGCC 61.357 60.000 0.00 0.00 0.00 3.93
1 2 0.668401 ACGCGTACACAAGGGTTAGC 60.668 55.000 11.67 0.00 0.00 3.09
83 92 6.090358 CGCAGAAGAGGAAAACTAACGATTTA 59.910 38.462 0.00 0.00 0.00 1.40
92 101 1.569479 GCGCGCAGAAGAGGAAAACT 61.569 55.000 29.10 0.00 0.00 2.66
93 102 1.154395 GCGCGCAGAAGAGGAAAAC 60.154 57.895 29.10 0.00 0.00 2.43
240 253 4.760220 TGGAGGGGAAGGGGGAGC 62.760 72.222 0.00 0.00 0.00 4.70
241 254 2.692741 GTGGAGGGGAAGGGGGAG 60.693 72.222 0.00 0.00 0.00 4.30
242 255 3.547737 TGTGGAGGGGAAGGGGGA 61.548 66.667 0.00 0.00 0.00 4.81
243 256 3.017581 CTGTGGAGGGGAAGGGGG 61.018 72.222 0.00 0.00 0.00 5.40
244 257 3.732849 GCTGTGGAGGGGAAGGGG 61.733 72.222 0.00 0.00 0.00 4.79
245 258 2.612115 AGCTGTGGAGGGGAAGGG 60.612 66.667 0.00 0.00 0.00 3.95
246 259 2.673523 CAGCTGTGGAGGGGAAGG 59.326 66.667 5.25 0.00 0.00 3.46
247 260 2.045536 GCAGCTGTGGAGGGGAAG 60.046 66.667 16.64 0.00 0.00 3.46
248 261 3.650950 GGCAGCTGTGGAGGGGAA 61.651 66.667 16.64 0.00 0.00 3.97
327 350 4.530857 CTAAGCCGGGACCGCCTG 62.531 72.222 2.18 0.00 40.49 4.85
423 460 1.091771 ATCAGGCGACGGCAATGAAG 61.092 55.000 24.23 5.98 42.47 3.02
439 476 3.737972 CGGATCACGTGAATCTGGAATCA 60.738 47.826 24.13 0.00 37.93 2.57
452 489 2.954868 GATTCGCGCGGATCACGT 60.955 61.111 39.11 14.05 46.52 4.49
526 563 1.611261 CTTACCTCCGGTGGTGGGA 60.611 63.158 33.34 19.49 40.35 4.37
536 573 2.372504 GCTAGGGGAATTCCTTACCTCC 59.627 54.545 23.63 14.80 35.44 4.30
537 574 2.372504 GGCTAGGGGAATTCCTTACCTC 59.627 54.545 23.63 10.56 35.44 3.85
555 592 1.606531 GAATCTGTCCAGGCAGGCT 59.393 57.895 10.08 0.00 37.12 4.58
581 618 6.479990 CCTTATTGCTCACGAATACAGAATGA 59.520 38.462 0.00 0.00 39.69 2.57
608 645 1.345741 CAGATACCACATCCATCCGCT 59.654 52.381 0.00 0.00 0.00 5.52
708 746 7.491682 ACGGGTACTCGTATTAAATACAATGT 58.508 34.615 21.52 0.00 41.98 2.71
724 762 3.241067 TGCTGACATTAACGGGTACTC 57.759 47.619 0.00 0.00 0.00 2.59
725 763 3.007614 AGTTGCTGACATTAACGGGTACT 59.992 43.478 0.00 0.00 0.00 2.73
726 764 3.332034 AGTTGCTGACATTAACGGGTAC 58.668 45.455 0.00 0.00 0.00 3.34
799 839 0.603975 GCAATATCTCTCCACCGGGC 60.604 60.000 6.32 0.00 0.00 6.13
849 889 8.519526 ACTAACACAGTCTGAACAAAAATCAAA 58.480 29.630 6.91 0.00 28.33 2.69
887 927 8.552034 GCTAAACAATAGATGTATGAAGGTCAC 58.448 37.037 0.00 0.00 42.99 3.67
889 929 8.768955 CAGCTAAACAATAGATGTATGAAGGTC 58.231 37.037 0.00 0.00 42.99 3.85
995 1035 7.222999 CCACGTCTTTCTTCTTATCCATCTTAC 59.777 40.741 0.00 0.00 0.00 2.34
1017 1057 2.430694 TCCAGGTTCTATGTCATCCACG 59.569 50.000 0.00 0.00 0.00 4.94
1020 1060 2.771943 TGGTCCAGGTTCTATGTCATCC 59.228 50.000 0.00 0.00 0.00 3.51
1101 1141 2.012673 CTGCTTTTCAGAATCCCCTCG 58.987 52.381 0.00 0.00 45.72 4.63
1182 1227 3.310774 CCAACTTGCCAGATAGATGAACG 59.689 47.826 0.00 0.00 0.00 3.95
1184 1229 4.574674 ACCAACTTGCCAGATAGATGAA 57.425 40.909 0.00 0.00 0.00 2.57
1193 1238 6.455360 AATATATGACAACCAACTTGCCAG 57.545 37.500 0.00 0.00 32.41 4.85
1235 1355 9.585369 AGGGAGTAGTAAATACCAAGTATACTC 57.415 37.037 5.70 0.00 32.65 2.59
1272 1392 5.957842 TTGACTAAAACCATGCCAAGTAG 57.042 39.130 0.00 0.00 0.00 2.57
1279 1399 8.810652 TTAGTTCAAATTGACTAAAACCATGC 57.189 30.769 12.31 0.00 0.00 4.06
1331 1459 3.238108 AGTCATGAACAAGCTACTCCG 57.762 47.619 0.00 0.00 0.00 4.63
1338 1466 6.036517 CCAGAGTAACATAGTCATGAACAAGC 59.963 42.308 0.00 0.00 35.96 4.01
1345 1473 4.122776 GGTGCCAGAGTAACATAGTCATG 58.877 47.826 0.00 0.00 38.21 3.07
1423 1551 2.622546 TTTAGCCCGCGAAACAAATC 57.377 45.000 8.23 0.00 0.00 2.17
1457 1587 6.156083 ACTTTCTTATCCTCCTTTCCTCTCTG 59.844 42.308 0.00 0.00 0.00 3.35
1680 1810 5.917462 GGCCACAGAAATGCCTAATAATTT 58.083 37.500 0.00 0.00 42.01 1.82
1763 1893 4.406972 TGATGTTCCCCTTCAGATCACTAG 59.593 45.833 0.00 0.00 0.00 2.57
1909 2040 8.381387 CAGCGAATTATGAGAATCTGTATGATG 58.619 37.037 0.00 0.00 35.21 3.07
1918 2049 5.415415 AAGTGCAGCGAATTATGAGAATC 57.585 39.130 0.00 0.00 0.00 2.52
2106 2237 1.303236 TTTGACCTGGGCCATGTCG 60.303 57.895 29.02 10.13 32.96 4.35
2150 2281 7.657761 CCAACATCCCTATCATAAACAGAGTAC 59.342 40.741 0.00 0.00 0.00 2.73
2203 2334 7.380431 TGTTCAACCCTTAATAATACGTTGG 57.620 36.000 0.00 0.00 33.19 3.77
2373 2504 4.037222 TCACCTGATACAAGCCTTCCATA 58.963 43.478 0.00 0.00 0.00 2.74
2445 2584 5.246656 TCCGAAGTTCAGGTTTCTAATGGTA 59.753 40.000 3.32 0.00 0.00 3.25
2467 2606 5.647225 AGAAAAAGCTCTCATTCATCACTCC 59.353 40.000 0.00 0.00 0.00 3.85
2592 2733 5.016051 TGCTGAACAAGTGGCAAATTTTA 57.984 34.783 0.00 0.00 0.00 1.52
2594 2735 3.460103 CTGCTGAACAAGTGGCAAATTT 58.540 40.909 0.00 0.00 34.21 1.82
2600 2741 1.285023 CTGCTGCTGAACAAGTGGC 59.715 57.895 0.00 0.00 0.00 5.01
2630 2771 4.335315 TGTGTTCCAAAACTAAGTGCTCAG 59.665 41.667 0.00 0.00 36.30 3.35
2642 2783 3.883830 AGTGTTGCATGTGTTCCAAAA 57.116 38.095 0.00 0.00 0.00 2.44
2667 2808 6.449698 TGCAGATTTCTTCCAGAAAATGTTC 58.550 36.000 3.13 0.00 46.08 3.18
2668 2809 6.409524 TGCAGATTTCTTCCAGAAAATGTT 57.590 33.333 3.13 0.00 46.08 2.71
2678 2819 7.565323 AGTTCAGAATATGCAGATTTCTTCC 57.435 36.000 8.18 0.00 0.00 3.46
2777 3001 7.417612 TGTGCTCTTGAACTAATTTCTCAAAC 58.582 34.615 0.00 0.00 34.97 2.93
2861 3085 5.765677 TGAGAAAACCGTGATAAACCATTGA 59.234 36.000 0.00 0.00 0.00 2.57
2876 3100 7.417911 GGAAATGGGAAGGAATATGAGAAAACC 60.418 40.741 0.00 0.00 0.00 3.27
2885 3109 7.519004 AGAGTCATAGGAAATGGGAAGGAATAT 59.481 37.037 0.00 0.00 0.00 1.28
2900 3124 5.838955 TCCCAAACTCTAAGAGTCATAGGA 58.161 41.667 2.71 0.00 42.59 2.94
2902 3126 7.069331 AGACATCCCAAACTCTAAGAGTCATAG 59.931 40.741 0.00 0.00 42.59 2.23
2967 3191 6.913673 GCTCAGGTAAACACGAAACATAAAAA 59.086 34.615 0.00 0.00 0.00 1.94
3105 3329 7.554835 CCACTACATGTACTGCCCTTAATAAAA 59.445 37.037 0.08 0.00 0.00 1.52
3122 3346 7.856398 CGACAGTAGAAGTTATACCACTACATG 59.144 40.741 4.05 0.00 36.78 3.21
3136 3360 7.820578 AGTAATATTAGGCGACAGTAGAAGT 57.179 36.000 0.00 0.00 0.00 3.01
3137 3361 8.569641 AGAAGTAATATTAGGCGACAGTAGAAG 58.430 37.037 0.00 0.00 0.00 2.85
3138 3362 8.461249 AGAAGTAATATTAGGCGACAGTAGAA 57.539 34.615 0.00 0.00 0.00 2.10
3140 3364 9.001542 AGTAGAAGTAATATTAGGCGACAGTAG 57.998 37.037 0.00 0.00 0.00 2.57
3144 3368 7.519488 CGACAGTAGAAGTAATATTAGGCGACA 60.519 40.741 0.00 0.00 0.00 4.35
3145 3369 6.796072 CGACAGTAGAAGTAATATTAGGCGAC 59.204 42.308 0.00 0.00 0.00 5.19
3165 3412 5.293324 TGTTGCAAGTTATATTAGGCGACAG 59.707 40.000 0.00 0.00 39.86 3.51
3167 3414 5.293569 ACTGTTGCAAGTTATATTAGGCGAC 59.706 40.000 0.00 0.00 36.45 5.19
3173 3420 7.663905 ACTCCACAACTGTTGCAAGTTATATTA 59.336 33.333 19.82 0.00 38.34 0.98
3182 3429 2.822561 TCAAACTCCACAACTGTTGCAA 59.177 40.909 19.82 0.00 0.00 4.08
3187 3434 4.776349 TGTACATCAAACTCCACAACTGT 58.224 39.130 0.00 0.00 0.00 3.55
3190 3437 5.689383 ACATGTACATCAAACTCCACAAC 57.311 39.130 5.07 0.00 0.00 3.32
3247 3494 2.952310 GTCACTGGAAGGAACAAAAGCT 59.048 45.455 0.00 0.00 39.30 3.74
3253 3501 3.557054 GCATACAGTCACTGGAAGGAACA 60.557 47.826 10.28 0.00 39.30 3.18
3261 3509 2.479566 AAGGTGCATACAGTCACTGG 57.520 50.000 10.28 0.00 35.51 4.00
3294 3542 1.341080 TCACACTGCACTCCATCTGA 58.659 50.000 0.00 0.00 0.00 3.27
3344 3592 8.654997 AGAAATAGAATGCTTCTCTATGGCTAA 58.345 33.333 2.27 0.00 41.14 3.09
3345 3593 8.200024 AGAAATAGAATGCTTCTCTATGGCTA 57.800 34.615 2.27 0.00 41.14 3.93
3363 3611 8.543774 AGGTGCATACATAATCCCTAGAAATAG 58.456 37.037 0.00 0.00 0.00 1.73
3364 3612 8.449423 AGGTGCATACATAATCCCTAGAAATA 57.551 34.615 0.00 0.00 0.00 1.40
3365 3613 7.335127 AGGTGCATACATAATCCCTAGAAAT 57.665 36.000 0.00 0.00 0.00 2.17
3366 3614 6.763715 AGGTGCATACATAATCCCTAGAAA 57.236 37.500 0.00 0.00 0.00 2.52
3367 3615 6.763715 AAGGTGCATACATAATCCCTAGAA 57.236 37.500 0.00 0.00 0.00 2.10
3368 3616 7.865530 TTAAGGTGCATACATAATCCCTAGA 57.134 36.000 0.00 0.00 0.00 2.43
3369 3617 8.950210 CATTTAAGGTGCATACATAATCCCTAG 58.050 37.037 0.00 0.00 0.00 3.02
3370 3618 8.444783 ACATTTAAGGTGCATACATAATCCCTA 58.555 33.333 0.00 0.00 0.00 3.53
3371 3619 7.297614 ACATTTAAGGTGCATACATAATCCCT 58.702 34.615 0.00 0.00 0.00 4.20
3372 3620 7.524717 ACATTTAAGGTGCATACATAATCCC 57.475 36.000 0.00 0.00 0.00 3.85
3382 3630 9.995003 TCTGAAAAATTAACATTTAAGGTGCAT 57.005 25.926 0.00 0.00 31.89 3.96
3383 3631 9.995003 ATCTGAAAAATTAACATTTAAGGTGCA 57.005 25.926 0.00 0.00 31.89 4.57
3390 3638 9.638239 GCACTCCATCTGAAAAATTAACATTTA 57.362 29.630 0.00 0.00 31.89 1.40
3391 3639 8.149647 TGCACTCCATCTGAAAAATTAACATTT 58.850 29.630 0.00 0.00 33.72 2.32
3392 3640 7.669427 TGCACTCCATCTGAAAAATTAACATT 58.331 30.769 0.00 0.00 0.00 2.71
3393 3641 7.039504 ACTGCACTCCATCTGAAAAATTAACAT 60.040 33.333 0.00 0.00 0.00 2.71
3394 3642 6.265196 ACTGCACTCCATCTGAAAAATTAACA 59.735 34.615 0.00 0.00 0.00 2.41
3395 3643 6.583806 CACTGCACTCCATCTGAAAAATTAAC 59.416 38.462 0.00 0.00 0.00 2.01
3396 3644 6.265196 ACACTGCACTCCATCTGAAAAATTAA 59.735 34.615 0.00 0.00 0.00 1.40
3397 3645 5.769662 ACACTGCACTCCATCTGAAAAATTA 59.230 36.000 0.00 0.00 0.00 1.40
3398 3646 4.586001 ACACTGCACTCCATCTGAAAAATT 59.414 37.500 0.00 0.00 0.00 1.82
3399 3647 4.022589 CACACTGCACTCCATCTGAAAAAT 60.023 41.667 0.00 0.00 0.00 1.82
3400 3648 3.316029 CACACTGCACTCCATCTGAAAAA 59.684 43.478 0.00 0.00 0.00 1.94
3401 3649 2.880268 CACACTGCACTCCATCTGAAAA 59.120 45.455 0.00 0.00 0.00 2.29
3402 3650 2.104622 TCACACTGCACTCCATCTGAAA 59.895 45.455 0.00 0.00 0.00 2.69
3403 3651 1.693606 TCACACTGCACTCCATCTGAA 59.306 47.619 0.00 0.00 0.00 3.02
3404 3652 1.341080 TCACACTGCACTCCATCTGA 58.659 50.000 0.00 0.00 0.00 3.27
3405 3653 2.174363 TTCACACTGCACTCCATCTG 57.826 50.000 0.00 0.00 0.00 2.90
3406 3654 3.430042 AATTCACACTGCACTCCATCT 57.570 42.857 0.00 0.00 0.00 2.90
3407 3655 4.095483 CCTAAATTCACACTGCACTCCATC 59.905 45.833 0.00 0.00 0.00 3.51
3408 3656 4.012374 CCTAAATTCACACTGCACTCCAT 58.988 43.478 0.00 0.00 0.00 3.41
3409 3657 3.072330 TCCTAAATTCACACTGCACTCCA 59.928 43.478 0.00 0.00 0.00 3.86
3410 3658 3.674997 TCCTAAATTCACACTGCACTCC 58.325 45.455 0.00 0.00 0.00 3.85
3411 3659 4.083271 GGTTCCTAAATTCACACTGCACTC 60.083 45.833 0.00 0.00 0.00 3.51
3412 3660 3.821033 GGTTCCTAAATTCACACTGCACT 59.179 43.478 0.00 0.00 0.00 4.40
3413 3661 3.568007 TGGTTCCTAAATTCACACTGCAC 59.432 43.478 0.00 0.00 0.00 4.57
3414 3662 3.820467 CTGGTTCCTAAATTCACACTGCA 59.180 43.478 0.00 0.00 0.00 4.41
3415 3663 4.072131 TCTGGTTCCTAAATTCACACTGC 58.928 43.478 0.00 0.00 0.00 4.40
3416 3664 5.049405 GTGTCTGGTTCCTAAATTCACACTG 60.049 44.000 0.00 0.00 31.04 3.66
3417 3665 5.063880 GTGTCTGGTTCCTAAATTCACACT 58.936 41.667 0.00 0.00 31.04 3.55
3418 3666 4.819630 TGTGTCTGGTTCCTAAATTCACAC 59.180 41.667 0.00 0.00 33.70 3.82
3419 3667 5.042463 TGTGTCTGGTTCCTAAATTCACA 57.958 39.130 0.00 0.00 0.00 3.58
3420 3668 6.206634 TGATTGTGTCTGGTTCCTAAATTCAC 59.793 38.462 0.00 0.00 0.00 3.18
3421 3669 6.303054 TGATTGTGTCTGGTTCCTAAATTCA 58.697 36.000 0.00 0.00 0.00 2.57
3422 3670 6.817765 TGATTGTGTCTGGTTCCTAAATTC 57.182 37.500 0.00 0.00 0.00 2.17
3423 3671 7.781324 ATTGATTGTGTCTGGTTCCTAAATT 57.219 32.000 0.00 0.00 0.00 1.82
3424 3672 7.781324 AATTGATTGTGTCTGGTTCCTAAAT 57.219 32.000 0.00 0.00 0.00 1.40
3425 3673 7.595819 AAATTGATTGTGTCTGGTTCCTAAA 57.404 32.000 0.00 0.00 0.00 1.85
3426 3674 7.595819 AAAATTGATTGTGTCTGGTTCCTAA 57.404 32.000 0.00 0.00 0.00 2.69
3427 3675 7.286546 TCAAAAATTGATTGTGTCTGGTTCCTA 59.713 33.333 4.66 0.00 34.08 2.94
3428 3676 6.098124 TCAAAAATTGATTGTGTCTGGTTCCT 59.902 34.615 4.66 0.00 34.08 3.36
3429 3677 6.279882 TCAAAAATTGATTGTGTCTGGTTCC 58.720 36.000 4.66 0.00 34.08 3.62
3444 3692 9.859427 TGTTTCTCTATGGCTAATCAAAAATTG 57.141 29.630 0.00 0.00 0.00 2.32
3448 3696 9.466497 AGAATGTTTCTCTATGGCTAATCAAAA 57.534 29.630 0.00 0.00 34.07 2.44
3456 3704 9.995003 CTAGAAATAGAATGTTTCTCTATGGCT 57.005 33.333 5.00 0.00 43.01 4.75
3457 3705 9.213799 CCTAGAAATAGAATGTTTCTCTATGGC 57.786 37.037 5.00 0.00 43.01 4.40
3458 3706 9.717942 CCCTAGAAATAGAATGTTTCTCTATGG 57.282 37.037 5.00 4.83 43.01 2.74
3719 4124 7.528675 ACTTGGAAAACAACCTTAATACCCTA 58.471 34.615 0.00 0.00 34.76 3.53
3968 4379 8.696043 ACTAATATTGCCATCTCATTTGCTTA 57.304 30.769 0.00 0.00 0.00 3.09
3997 4410 3.799917 GCAAGAACTCACAAAACCATGGG 60.800 47.826 18.09 0.00 0.00 4.00
4066 4479 3.639561 TCCTACCATAAGCGATACAGCAA 59.360 43.478 0.00 0.00 40.15 3.91
4078 4491 7.760794 CACACAAACGTATTACTCCTACCATAA 59.239 37.037 0.00 0.00 0.00 1.90
4103 4519 0.617935 TCCCCGATCATCAGCAAACA 59.382 50.000 0.00 0.00 0.00 2.83
4118 4534 2.029020 GGACTGCAAATTTCAAGTCCCC 60.029 50.000 25.62 11.93 39.71 4.81
4120 4536 2.627699 TGGGACTGCAAATTTCAAGTCC 59.372 45.455 26.92 26.92 43.51 3.85
4148 4564 7.634671 TCAAGTGTACCTCGATTATCAGTAA 57.365 36.000 0.00 0.00 0.00 2.24
4286 4703 0.883833 CAGCCCTGCTCATCGTTTTT 59.116 50.000 0.00 0.00 36.40 1.94
4350 4767 5.004345 CGATTTGTTTTTGCAAACGAGAACT 59.996 36.000 19.74 9.10 44.76 3.01
4406 4828 5.344207 AGTAAAACAAAGCGATGAGTGAC 57.656 39.130 0.00 0.00 0.00 3.67
4441 4867 5.911378 TGCAGTTATGAAAACATGGCATA 57.089 34.783 0.00 0.00 0.00 3.14
4442 4868 4.804868 TGCAGTTATGAAAACATGGCAT 57.195 36.364 0.00 0.00 0.00 4.40
4443 4869 4.597404 TTGCAGTTATGAAAACATGGCA 57.403 36.364 0.00 0.00 0.00 4.92
4444 4870 4.389687 CCTTTGCAGTTATGAAAACATGGC 59.610 41.667 0.00 0.00 30.40 4.40
4445 4871 5.540911 ACCTTTGCAGTTATGAAAACATGG 58.459 37.500 0.00 0.00 30.40 3.66
4446 4872 6.700960 TGAACCTTTGCAGTTATGAAAACATG 59.299 34.615 0.00 0.00 30.40 3.21
4447 4873 6.815089 TGAACCTTTGCAGTTATGAAAACAT 58.185 32.000 0.00 0.00 30.40 2.71
4450 4876 7.048629 TCATGAACCTTTGCAGTTATGAAAA 57.951 32.000 0.00 0.00 32.75 2.29
4468 4894 7.961351 ACAAGGGAAAAATACAACATCATGAA 58.039 30.769 0.00 0.00 0.00 2.57
4539 4965 6.364165 CACAACATTCTCACCATTTCATTGTC 59.636 38.462 0.00 0.00 0.00 3.18
4591 5017 0.036164 ATTGGCAGGTACAAGCGACA 59.964 50.000 0.00 0.00 32.45 4.35
4649 5083 7.283127 ACTCTCAACATACAGTCATGTTTTTGT 59.717 33.333 0.00 0.00 44.75 2.83
4663 5097 4.625742 TGCGCTTTAGAACTCTCAACATAC 59.374 41.667 9.73 0.00 0.00 2.39
4677 5111 4.314961 TCCCACATATGTATGCGCTTTAG 58.685 43.478 8.32 0.00 37.19 1.85
4705 5142 1.466167 CAGATGGTTTCCTTGCAGACG 59.534 52.381 0.00 0.00 0.00 4.18
4706 5143 2.508526 ACAGATGGTTTCCTTGCAGAC 58.491 47.619 0.00 0.00 0.00 3.51
4710 5147 3.319122 ACTTCAACAGATGGTTTCCTTGC 59.681 43.478 0.00 0.00 37.72 4.01
4713 5150 4.536765 ACAACTTCAACAGATGGTTTCCT 58.463 39.130 0.00 0.00 37.72 3.36
4753 5190 7.342026 AGCGACATATACCCTCAATATGATGTA 59.658 37.037 9.44 0.00 38.89 2.29
4754 5191 6.155221 AGCGACATATACCCTCAATATGATGT 59.845 38.462 9.44 0.00 38.89 3.06
4755 5192 6.478016 CAGCGACATATACCCTCAATATGATG 59.522 42.308 9.44 3.65 38.89 3.07
4756 5193 6.381133 TCAGCGACATATACCCTCAATATGAT 59.619 38.462 9.44 0.00 38.89 2.45
4759 5196 6.437477 TCTTCAGCGACATATACCCTCAATAT 59.563 38.462 0.00 0.00 0.00 1.28
4760 5197 5.773176 TCTTCAGCGACATATACCCTCAATA 59.227 40.000 0.00 0.00 0.00 1.90
4761 5198 4.588951 TCTTCAGCGACATATACCCTCAAT 59.411 41.667 0.00 0.00 0.00 2.57
4762 5199 3.958147 TCTTCAGCGACATATACCCTCAA 59.042 43.478 0.00 0.00 0.00 3.02
4763 5200 3.562182 TCTTCAGCGACATATACCCTCA 58.438 45.455 0.00 0.00 0.00 3.86
4764 5201 4.551388 CTTCTTCAGCGACATATACCCTC 58.449 47.826 0.00 0.00 0.00 4.30
4765 5202 3.322254 CCTTCTTCAGCGACATATACCCT 59.678 47.826 0.00 0.00 0.00 4.34
4766 5203 3.654414 CCTTCTTCAGCGACATATACCC 58.346 50.000 0.00 0.00 0.00 3.69
4767 5204 3.060602 GCCTTCTTCAGCGACATATACC 58.939 50.000 0.00 0.00 0.00 2.73
4768 5205 3.717707 TGCCTTCTTCAGCGACATATAC 58.282 45.455 0.00 0.00 0.00 1.47
4769 5206 4.400529 TTGCCTTCTTCAGCGACATATA 57.599 40.909 0.00 0.00 0.00 0.86
4770 5207 2.988010 TGCCTTCTTCAGCGACATAT 57.012 45.000 0.00 0.00 0.00 1.78
4771 5208 2.760634 TTGCCTTCTTCAGCGACATA 57.239 45.000 0.00 0.00 0.00 2.29
4772 5209 1.741706 CATTGCCTTCTTCAGCGACAT 59.258 47.619 0.00 0.00 0.00 3.06
4773 5210 1.159285 CATTGCCTTCTTCAGCGACA 58.841 50.000 0.00 0.00 0.00 4.35
4774 5211 0.449388 CCATTGCCTTCTTCAGCGAC 59.551 55.000 0.00 0.00 0.00 5.19
4775 5212 0.677731 CCCATTGCCTTCTTCAGCGA 60.678 55.000 0.00 0.00 0.00 4.93
4776 5213 0.677731 TCCCATTGCCTTCTTCAGCG 60.678 55.000 0.00 0.00 0.00 5.18
4777 5214 1.549203 TTCCCATTGCCTTCTTCAGC 58.451 50.000 0.00 0.00 0.00 4.26
4778 5215 4.813750 AATTTCCCATTGCCTTCTTCAG 57.186 40.909 0.00 0.00 0.00 3.02
4779 5216 4.262981 CCAAATTTCCCATTGCCTTCTTCA 60.263 41.667 0.00 0.00 0.00 3.02
4780 5217 4.256110 CCAAATTTCCCATTGCCTTCTTC 58.744 43.478 0.00 0.00 0.00 2.87
4781 5218 3.559811 GCCAAATTTCCCATTGCCTTCTT 60.560 43.478 0.00 0.00 0.00 2.52
4782 5219 2.026915 GCCAAATTTCCCATTGCCTTCT 60.027 45.455 0.00 0.00 0.00 2.85
4783 5220 2.026915 AGCCAAATTTCCCATTGCCTTC 60.027 45.455 0.00 0.00 0.00 3.46
4784 5221 1.987368 AGCCAAATTTCCCATTGCCTT 59.013 42.857 0.00 0.00 0.00 4.35
4785 5222 1.279846 CAGCCAAATTTCCCATTGCCT 59.720 47.619 0.00 0.00 0.00 4.75
4786 5223 1.741528 CAGCCAAATTTCCCATTGCC 58.258 50.000 0.00 0.00 0.00 4.52
4787 5224 1.089112 GCAGCCAAATTTCCCATTGC 58.911 50.000 0.00 0.00 0.00 3.56
4788 5225 2.235402 AGAGCAGCCAAATTTCCCATTG 59.765 45.455 0.00 0.00 0.00 2.82
4789 5226 2.543635 AGAGCAGCCAAATTTCCCATT 58.456 42.857 0.00 0.00 0.00 3.16
4790 5227 2.242882 AGAGCAGCCAAATTTCCCAT 57.757 45.000 0.00 0.00 0.00 4.00
4791 5228 2.014010 AAGAGCAGCCAAATTTCCCA 57.986 45.000 0.00 0.00 0.00 4.37
4792 5229 3.407424 AAAAGAGCAGCCAAATTTCCC 57.593 42.857 0.00 0.00 0.00 3.97
4793 5230 4.931601 CCTAAAAAGAGCAGCCAAATTTCC 59.068 41.667 0.00 0.00 0.00 3.13
4794 5231 5.541845 ACCTAAAAAGAGCAGCCAAATTTC 58.458 37.500 0.00 0.00 0.00 2.17
4795 5232 5.551305 ACCTAAAAAGAGCAGCCAAATTT 57.449 34.783 0.00 0.00 0.00 1.82
4796 5233 5.551305 AACCTAAAAAGAGCAGCCAAATT 57.449 34.783 0.00 0.00 0.00 1.82
4797 5234 5.070313 TCAAACCTAAAAAGAGCAGCCAAAT 59.930 36.000 0.00 0.00 0.00 2.32
4798 5235 4.404073 TCAAACCTAAAAAGAGCAGCCAAA 59.596 37.500 0.00 0.00 0.00 3.28
4799 5236 3.957497 TCAAACCTAAAAAGAGCAGCCAA 59.043 39.130 0.00 0.00 0.00 4.52
4800 5237 3.317993 GTCAAACCTAAAAAGAGCAGCCA 59.682 43.478 0.00 0.00 0.00 4.75
4801 5238 3.317993 TGTCAAACCTAAAAAGAGCAGCC 59.682 43.478 0.00 0.00 0.00 4.85
4802 5239 4.540824 CTGTCAAACCTAAAAAGAGCAGC 58.459 43.478 0.00 0.00 0.00 5.25
4803 5240 4.022849 CCCTGTCAAACCTAAAAAGAGCAG 60.023 45.833 0.00 0.00 0.00 4.24
4804 5241 3.888930 CCCTGTCAAACCTAAAAAGAGCA 59.111 43.478 0.00 0.00 0.00 4.26
4805 5242 4.142038 TCCCTGTCAAACCTAAAAAGAGC 58.858 43.478 0.00 0.00 0.00 4.09
4806 5243 6.062095 TCTTCCCTGTCAAACCTAAAAAGAG 58.938 40.000 0.00 0.00 0.00 2.85
4807 5244 6.008696 TCTTCCCTGTCAAACCTAAAAAGA 57.991 37.500 0.00 0.00 0.00 2.52
4808 5245 6.709018 TTCTTCCCTGTCAAACCTAAAAAG 57.291 37.500 0.00 0.00 0.00 2.27
4809 5246 7.563556 AGATTTCTTCCCTGTCAAACCTAAAAA 59.436 33.333 0.00 0.00 0.00 1.94
4810 5247 7.066781 AGATTTCTTCCCTGTCAAACCTAAAA 58.933 34.615 0.00 0.00 0.00 1.52
4811 5248 6.610830 AGATTTCTTCCCTGTCAAACCTAAA 58.389 36.000 0.00 0.00 0.00 1.85
4812 5249 6.200878 AGATTTCTTCCCTGTCAAACCTAA 57.799 37.500 0.00 0.00 0.00 2.69
4813 5250 5.280521 GGAGATTTCTTCCCTGTCAAACCTA 60.281 44.000 0.00 0.00 0.00 3.08
4814 5251 4.507512 GGAGATTTCTTCCCTGTCAAACCT 60.508 45.833 0.00 0.00 0.00 3.50
4815 5252 3.759086 GGAGATTTCTTCCCTGTCAAACC 59.241 47.826 0.00 0.00 0.00 3.27
4816 5253 3.759086 GGGAGATTTCTTCCCTGTCAAAC 59.241 47.826 3.06 0.00 40.46 2.93
4817 5254 3.397618 TGGGAGATTTCTTCCCTGTCAAA 59.602 43.478 11.33 0.00 41.16 2.69
4818 5255 2.986019 TGGGAGATTTCTTCCCTGTCAA 59.014 45.455 11.33 0.00 41.16 3.18
4819 5256 2.631384 TGGGAGATTTCTTCCCTGTCA 58.369 47.619 11.33 0.00 41.16 3.58
4820 5257 3.941704 ATGGGAGATTTCTTCCCTGTC 57.058 47.619 11.33 0.00 41.16 3.51
4821 5258 4.375313 AGTATGGGAGATTTCTTCCCTGT 58.625 43.478 11.33 3.58 41.16 4.00
4822 5259 5.379706 AAGTATGGGAGATTTCTTCCCTG 57.620 43.478 11.33 0.00 41.16 4.45
4823 5260 5.103898 GGAAAGTATGGGAGATTTCTTCCCT 60.104 44.000 11.33 0.00 41.16 4.20
4824 5261 5.103898 AGGAAAGTATGGGAGATTTCTTCCC 60.104 44.000 2.35 3.33 41.16 3.97
4825 5262 6.007485 AGGAAAGTATGGGAGATTTCTTCC 57.993 41.667 0.00 0.00 42.26 3.46
4826 5263 7.342581 AGAAGGAAAGTATGGGAGATTTCTTC 58.657 38.462 0.00 0.00 33.25 2.87
4827 5264 7.277405 AGAAGGAAAGTATGGGAGATTTCTT 57.723 36.000 0.00 0.00 33.25 2.52
4828 5265 6.899892 AGAAGGAAAGTATGGGAGATTTCT 57.100 37.500 0.00 0.00 33.25 2.52
4829 5266 7.713073 CAGTAGAAGGAAAGTATGGGAGATTTC 59.287 40.741 0.00 0.00 0.00 2.17
4830 5267 7.403231 TCAGTAGAAGGAAAGTATGGGAGATTT 59.597 37.037 0.00 0.00 0.00 2.17
4831 5268 6.903534 TCAGTAGAAGGAAAGTATGGGAGATT 59.096 38.462 0.00 0.00 0.00 2.40
4832 5269 6.444704 TCAGTAGAAGGAAAGTATGGGAGAT 58.555 40.000 0.00 0.00 0.00 2.75
4833 5270 5.838955 TCAGTAGAAGGAAAGTATGGGAGA 58.161 41.667 0.00 0.00 0.00 3.71
4834 5271 6.546428 TTCAGTAGAAGGAAAGTATGGGAG 57.454 41.667 0.00 0.00 0.00 4.30
4835 5272 6.546428 CTTCAGTAGAAGGAAAGTATGGGA 57.454 41.667 0.00 0.00 46.01 4.37
4846 5283 7.123418 AATCACTCGATTGCTTCAGTAGAAGG 61.123 42.308 7.28 0.00 42.37 3.46
4847 5284 5.809562 AATCACTCGATTGCTTCAGTAGAAG 59.190 40.000 0.00 1.01 42.72 2.85
4848 5285 4.783764 TCACTCGATTGCTTCAGTAGAA 57.216 40.909 0.00 0.00 0.00 2.10
4849 5286 4.991153 ATCACTCGATTGCTTCAGTAGA 57.009 40.909 0.00 0.00 0.00 2.59
4850 5287 6.416455 GTCTAATCACTCGATTGCTTCAGTAG 59.584 42.308 0.00 0.00 42.00 2.57
4851 5288 6.127730 TGTCTAATCACTCGATTGCTTCAGTA 60.128 38.462 0.00 0.00 42.00 2.74
4852 5289 5.105752 GTCTAATCACTCGATTGCTTCAGT 58.894 41.667 0.00 0.00 42.00 3.41
4853 5290 5.105063 TGTCTAATCACTCGATTGCTTCAG 58.895 41.667 0.00 0.00 42.00 3.02
4854 5291 5.072040 TGTCTAATCACTCGATTGCTTCA 57.928 39.130 0.00 0.00 42.00 3.02
4855 5292 5.344066 TCTGTCTAATCACTCGATTGCTTC 58.656 41.667 0.00 0.00 42.00 3.86
4856 5293 5.330455 TCTGTCTAATCACTCGATTGCTT 57.670 39.130 0.00 0.00 42.00 3.91
4857 5294 4.991153 TCTGTCTAATCACTCGATTGCT 57.009 40.909 0.00 0.00 42.00 3.91
4858 5295 7.700322 TTTATCTGTCTAATCACTCGATTGC 57.300 36.000 0.00 0.00 42.00 3.56
4881 5318 6.547510 AGGCTGTTAAGATCTCTGTTGTTTTT 59.452 34.615 0.00 0.00 0.00 1.94
4882 5319 6.064717 AGGCTGTTAAGATCTCTGTTGTTTT 58.935 36.000 0.00 0.00 0.00 2.43
4883 5320 5.625150 AGGCTGTTAAGATCTCTGTTGTTT 58.375 37.500 0.00 0.00 0.00 2.83
4884 5321 5.234466 AGGCTGTTAAGATCTCTGTTGTT 57.766 39.130 0.00 0.00 0.00 2.83
4885 5322 4.899352 AGGCTGTTAAGATCTCTGTTGT 57.101 40.909 0.00 0.00 0.00 3.32
4886 5323 4.633565 GGAAGGCTGTTAAGATCTCTGTTG 59.366 45.833 0.00 0.00 0.00 3.33
4887 5324 4.534103 AGGAAGGCTGTTAAGATCTCTGTT 59.466 41.667 0.00 0.00 0.00 3.16
4888 5325 4.100373 AGGAAGGCTGTTAAGATCTCTGT 58.900 43.478 0.00 0.00 0.00 3.41
4889 5326 4.405358 AGAGGAAGGCTGTTAAGATCTCTG 59.595 45.833 0.00 0.00 0.00 3.35
4890 5327 4.619679 AGAGGAAGGCTGTTAAGATCTCT 58.380 43.478 0.00 0.00 0.00 3.10
4891 5328 5.351948 AAGAGGAAGGCTGTTAAGATCTC 57.648 43.478 0.00 0.00 0.00 2.75
4892 5329 5.770685 AAAGAGGAAGGCTGTTAAGATCT 57.229 39.130 0.00 0.00 0.00 2.75
4893 5330 6.316640 GGTTAAAGAGGAAGGCTGTTAAGATC 59.683 42.308 0.00 0.00 0.00 2.75
4894 5331 6.012421 AGGTTAAAGAGGAAGGCTGTTAAGAT 60.012 38.462 0.00 0.00 0.00 2.40
4895 5332 5.309806 AGGTTAAAGAGGAAGGCTGTTAAGA 59.690 40.000 0.00 0.00 0.00 2.10
4896 5333 5.412904 CAGGTTAAAGAGGAAGGCTGTTAAG 59.587 44.000 0.00 0.00 0.00 1.85
4897 5334 5.072600 TCAGGTTAAAGAGGAAGGCTGTTAA 59.927 40.000 0.00 0.00 0.00 2.01
4898 5335 4.595781 TCAGGTTAAAGAGGAAGGCTGTTA 59.404 41.667 0.00 0.00 0.00 2.41
4899 5336 3.394606 TCAGGTTAAAGAGGAAGGCTGTT 59.605 43.478 0.00 0.00 0.00 3.16
4900 5337 2.979678 TCAGGTTAAAGAGGAAGGCTGT 59.020 45.455 0.00 0.00 0.00 4.40
4901 5338 3.703001 TCAGGTTAAAGAGGAAGGCTG 57.297 47.619 0.00 0.00 0.00 4.85
4902 5339 3.589288 ACATCAGGTTAAAGAGGAAGGCT 59.411 43.478 0.00 0.00 0.00 4.58
4903 5340 3.942115 GACATCAGGTTAAAGAGGAAGGC 59.058 47.826 0.00 0.00 0.00 4.35
4904 5341 4.226168 AGGACATCAGGTTAAAGAGGAAGG 59.774 45.833 0.00 0.00 0.00 3.46
4905 5342 5.181748 CAGGACATCAGGTTAAAGAGGAAG 58.818 45.833 0.00 0.00 0.00 3.46
4906 5343 4.019321 CCAGGACATCAGGTTAAAGAGGAA 60.019 45.833 0.00 0.00 0.00 3.36
4907 5344 3.519510 CCAGGACATCAGGTTAAAGAGGA 59.480 47.826 0.00 0.00 0.00 3.71
4908 5345 3.370953 CCCAGGACATCAGGTTAAAGAGG 60.371 52.174 0.00 0.00 0.00 3.69
4909 5346 3.878778 CCCAGGACATCAGGTTAAAGAG 58.121 50.000 0.00 0.00 0.00 2.85
4910 5347 2.026262 GCCCAGGACATCAGGTTAAAGA 60.026 50.000 0.00 0.00 0.00 2.52
4911 5348 2.369394 GCCCAGGACATCAGGTTAAAG 58.631 52.381 0.00 0.00 0.00 1.85
4912 5349 1.339631 CGCCCAGGACATCAGGTTAAA 60.340 52.381 0.00 0.00 0.00 1.52
4913 5350 0.251916 CGCCCAGGACATCAGGTTAA 59.748 55.000 0.00 0.00 0.00 2.01
4914 5351 1.904771 CGCCCAGGACATCAGGTTA 59.095 57.895 0.00 0.00 0.00 2.85
4915 5352 2.671070 CGCCCAGGACATCAGGTT 59.329 61.111 0.00 0.00 0.00 3.50
4916 5353 4.101448 GCGCCCAGGACATCAGGT 62.101 66.667 0.00 0.00 0.00 4.00
4939 5376 4.052518 AGGCATGGAGGGTGGTGC 62.053 66.667 0.00 0.00 36.88 5.01
4940 5377 2.273449 GAGGCATGGAGGGTGGTG 59.727 66.667 0.00 0.00 0.00 4.17
4941 5378 3.402681 CGAGGCATGGAGGGTGGT 61.403 66.667 0.00 0.00 0.00 4.16
4942 5379 4.864334 GCGAGGCATGGAGGGTGG 62.864 72.222 0.00 0.00 0.00 4.61
4943 5380 4.864334 GGCGAGGCATGGAGGGTG 62.864 72.222 0.00 0.00 0.00 4.61
4945 5382 4.247380 GAGGCGAGGCATGGAGGG 62.247 72.222 0.00 0.00 0.00 4.30
4946 5383 2.657102 GAAGAGGCGAGGCATGGAGG 62.657 65.000 0.00 0.00 0.00 4.30
4947 5384 1.227497 GAAGAGGCGAGGCATGGAG 60.227 63.158 0.00 0.00 0.00 3.86
4948 5385 2.903357 GAAGAGGCGAGGCATGGA 59.097 61.111 0.00 0.00 0.00 3.41
4949 5386 2.587194 CGAAGAGGCGAGGCATGG 60.587 66.667 0.00 0.00 0.00 3.66
4950 5387 1.880340 GACGAAGAGGCGAGGCATG 60.880 63.158 0.00 0.00 34.83 4.06
4951 5388 2.496817 GACGAAGAGGCGAGGCAT 59.503 61.111 0.00 0.00 34.83 4.40
4965 5402 2.047274 AGGGTTGATGCCACGACG 60.047 61.111 0.00 0.00 0.00 5.12
4968 5405 1.431488 CGATGAGGGTTGATGCCACG 61.431 60.000 0.00 0.00 0.00 4.94
4970 5407 1.224315 CCGATGAGGGTTGATGCCA 59.776 57.895 0.00 0.00 35.97 4.92
4973 5410 1.414181 AGCTACCGATGAGGGTTGATG 59.586 52.381 0.00 0.00 46.96 3.07
4982 5419 0.098200 CACGACGAAGCTACCGATGA 59.902 55.000 14.27 0.00 0.00 2.92
4983 5420 0.866061 CCACGACGAAGCTACCGATG 60.866 60.000 14.27 8.63 0.00 3.84
4984 5421 1.432251 CCACGACGAAGCTACCGAT 59.568 57.895 14.27 0.51 0.00 4.18
4985 5422 2.872557 CCACGACGAAGCTACCGA 59.127 61.111 14.27 0.00 0.00 4.69
4986 5423 2.879462 GCCACGACGAAGCTACCG 60.879 66.667 0.00 6.86 0.00 4.02
4987 5424 1.146358 GATGCCACGACGAAGCTACC 61.146 60.000 0.00 0.00 0.00 3.18
4988 5425 0.457853 TGATGCCACGACGAAGCTAC 60.458 55.000 0.00 3.36 0.00 3.58
4989 5426 0.245266 TTGATGCCACGACGAAGCTA 59.755 50.000 0.00 0.00 0.00 3.32
4990 5427 1.005037 TTGATGCCACGACGAAGCT 60.005 52.632 0.00 0.00 0.00 3.74
4991 5428 1.132640 GTTGATGCCACGACGAAGC 59.867 57.895 0.00 4.21 0.00 3.86
4992 5429 1.635663 GGGTTGATGCCACGACGAAG 61.636 60.000 0.00 0.00 0.00 3.79
4993 5430 1.669760 GGGTTGATGCCACGACGAA 60.670 57.895 0.00 0.00 0.00 3.85
4994 5431 2.047655 GGGTTGATGCCACGACGA 60.048 61.111 0.00 0.00 0.00 4.20
4995 5432 2.047274 AGGGTTGATGCCACGACG 60.047 61.111 0.00 0.00 0.00 5.12
4996 5433 0.392998 ATGAGGGTTGATGCCACGAC 60.393 55.000 0.00 0.00 0.00 4.34
4997 5434 0.107703 GATGAGGGTTGATGCCACGA 60.108 55.000 0.00 0.00 0.00 4.35
4998 5435 1.431488 CGATGAGGGTTGATGCCACG 61.431 60.000 0.00 0.00 0.00 4.94
4999 5436 1.097547 CCGATGAGGGTTGATGCCAC 61.098 60.000 0.00 0.00 35.97 5.01
5000 5437 1.224315 CCGATGAGGGTTGATGCCA 59.776 57.895 0.00 0.00 35.97 4.92
5001 5438 0.468226 TACCGATGAGGGTTGATGCC 59.532 55.000 0.00 0.00 46.96 4.40
5002 5439 1.871080 CTACCGATGAGGGTTGATGC 58.129 55.000 0.00 0.00 46.96 3.91
5003 5440 1.869754 CGCTACCGATGAGGGTTGATG 60.870 57.143 0.00 0.00 46.96 3.07
5004 5441 0.389391 CGCTACCGATGAGGGTTGAT 59.611 55.000 0.00 0.00 46.96 2.57
5005 5442 1.672854 CCGCTACCGATGAGGGTTGA 61.673 60.000 0.00 0.00 46.96 3.18
5006 5443 1.227263 CCGCTACCGATGAGGGTTG 60.227 63.158 0.00 0.00 46.96 3.77
5007 5444 2.432300 CCCGCTACCGATGAGGGTT 61.432 63.158 0.00 0.00 46.96 4.11
5008 5445 2.838225 CCCGCTACCGATGAGGGT 60.838 66.667 0.00 0.00 46.96 4.34
5009 5446 4.301027 GCCCGCTACCGATGAGGG 62.301 72.222 6.69 6.69 46.96 4.30
5011 5448 3.227276 AGGCCCGCTACCGATGAG 61.227 66.667 0.00 0.00 36.29 2.90
5012 5449 3.536917 CAGGCCCGCTACCGATGA 61.537 66.667 0.00 0.00 36.29 2.92
5013 5450 2.383245 ATTCAGGCCCGCTACCGATG 62.383 60.000 0.00 0.00 36.29 3.84
5014 5451 2.100879 GATTCAGGCCCGCTACCGAT 62.101 60.000 0.00 0.00 36.29 4.18
5015 5452 2.762459 ATTCAGGCCCGCTACCGA 60.762 61.111 0.00 0.00 36.29 4.69
5016 5453 2.280186 GATTCAGGCCCGCTACCG 60.280 66.667 0.00 0.00 0.00 4.02
5017 5454 0.533085 GAAGATTCAGGCCCGCTACC 60.533 60.000 0.00 0.00 0.00 3.18
5018 5455 0.533085 GGAAGATTCAGGCCCGCTAC 60.533 60.000 0.00 0.00 0.00 3.58
5019 5456 1.696097 GGGAAGATTCAGGCCCGCTA 61.696 60.000 0.00 0.00 0.00 4.26
5020 5457 2.592308 GGAAGATTCAGGCCCGCT 59.408 61.111 0.00 0.00 0.00 5.52
5021 5458 2.517166 GGGAAGATTCAGGCCCGC 60.517 66.667 0.00 0.00 0.00 6.13
5022 5459 0.820891 CATGGGAAGATTCAGGCCCG 60.821 60.000 0.00 0.00 43.70 6.13
5023 5460 0.468771 CCATGGGAAGATTCAGGCCC 60.469 60.000 2.85 0.00 41.08 5.80
5024 5461 1.111715 GCCATGGGAAGATTCAGGCC 61.112 60.000 15.13 0.00 34.71 5.19
5025 5462 0.106318 AGCCATGGGAAGATTCAGGC 60.106 55.000 15.13 0.00 40.85 4.85
5026 5463 2.429610 CAAAGCCATGGGAAGATTCAGG 59.570 50.000 15.13 0.00 0.00 3.86
5027 5464 2.159142 GCAAAGCCATGGGAAGATTCAG 60.159 50.000 15.13 0.00 0.00 3.02
5028 5465 1.826720 GCAAAGCCATGGGAAGATTCA 59.173 47.619 15.13 0.00 0.00 2.57
5029 5466 1.826720 TGCAAAGCCATGGGAAGATTC 59.173 47.619 15.13 0.00 0.00 2.52
5030 5467 1.941377 TGCAAAGCCATGGGAAGATT 58.059 45.000 15.13 0.00 0.00 2.40
5031 5468 1.551883 GTTGCAAAGCCATGGGAAGAT 59.448 47.619 15.13 0.00 0.00 2.40
5032 5469 0.968405 GTTGCAAAGCCATGGGAAGA 59.032 50.000 15.13 0.00 0.00 2.87
5033 5470 0.680618 TGTTGCAAAGCCATGGGAAG 59.319 50.000 15.13 0.00 0.00 3.46
5034 5471 1.126488 TTGTTGCAAAGCCATGGGAA 58.874 45.000 15.13 0.00 0.00 3.97
5035 5472 0.392336 GTTGTTGCAAAGCCATGGGA 59.608 50.000 15.13 0.00 0.00 4.37
5079 5516 2.239654 TGTGGTGATTCAGGAAGGGATC 59.760 50.000 0.00 0.00 0.00 3.36
5080 5517 2.278245 TGTGGTGATTCAGGAAGGGAT 58.722 47.619 0.00 0.00 0.00 3.85
5081 5518 1.741028 TGTGGTGATTCAGGAAGGGA 58.259 50.000 0.00 0.00 0.00 4.20
5082 5519 2.025981 TCATGTGGTGATTCAGGAAGGG 60.026 50.000 0.00 0.00 0.00 3.95
5083 5520 3.354948 TCATGTGGTGATTCAGGAAGG 57.645 47.619 0.00 0.00 0.00 3.46
5084 5521 4.520111 TGTTTCATGTGGTGATTCAGGAAG 59.480 41.667 0.00 0.00 36.14 3.46
5085 5522 4.468713 TGTTTCATGTGGTGATTCAGGAA 58.531 39.130 0.00 0.00 36.54 3.36
5086 5523 4.097551 TGTTTCATGTGGTGATTCAGGA 57.902 40.909 0.00 0.00 36.54 3.86
5087 5524 5.395682 AATGTTTCATGTGGTGATTCAGG 57.604 39.130 0.00 0.00 36.54 3.86
5088 5525 6.218019 ACAAATGTTTCATGTGGTGATTCAG 58.782 36.000 5.15 0.00 36.54 3.02
5089 5526 6.159299 ACAAATGTTTCATGTGGTGATTCA 57.841 33.333 5.15 0.00 36.54 2.57
5090 5527 7.481275 AAACAAATGTTTCATGTGGTGATTC 57.519 32.000 5.72 0.00 44.15 2.52
5104 5541 3.779759 ACACACGCATGAAACAAATGTT 58.220 36.364 0.00 0.00 40.50 2.71
5105 5542 3.435105 ACACACGCATGAAACAAATGT 57.565 38.095 0.00 0.00 0.00 2.71
5106 5543 6.074409 ACAATAACACACGCATGAAACAAATG 60.074 34.615 0.00 0.00 0.00 2.32
5107 5544 5.982516 ACAATAACACACGCATGAAACAAAT 59.017 32.000 0.00 0.00 0.00 2.32
5108 5545 5.230936 CACAATAACACACGCATGAAACAAA 59.769 36.000 0.00 0.00 0.00 2.83
5109 5546 4.737279 CACAATAACACACGCATGAAACAA 59.263 37.500 0.00 0.00 0.00 2.83
5110 5547 4.035675 TCACAATAACACACGCATGAAACA 59.964 37.500 0.00 0.00 0.00 2.83
5111 5548 4.532276 TCACAATAACACACGCATGAAAC 58.468 39.130 0.00 0.00 0.00 2.78
5112 5549 4.820284 TCACAATAACACACGCATGAAA 57.180 36.364 0.00 0.00 0.00 2.69
5113 5550 4.820284 TTCACAATAACACACGCATGAA 57.180 36.364 0.00 0.00 0.00 2.57
5114 5551 4.820284 TTTCACAATAACACACGCATGA 57.180 36.364 0.00 0.00 0.00 3.07
5115 5552 7.739022 ATAATTTCACAATAACACACGCATG 57.261 32.000 0.00 0.00 0.00 4.06
5116 5553 8.026026 TCAATAATTTCACAATAACACACGCAT 58.974 29.630 0.00 0.00 0.00 4.73
5117 5554 7.324856 GTCAATAATTTCACAATAACACACGCA 59.675 33.333 0.00 0.00 0.00 5.24
5118 5555 7.324856 TGTCAATAATTTCACAATAACACACGC 59.675 33.333 0.00 0.00 0.00 5.34
5119 5556 8.626576 GTGTCAATAATTTCACAATAACACACG 58.373 33.333 0.00 0.00 34.82 4.49
5120 5557 9.457110 TGTGTCAATAATTTCACAATAACACAC 57.543 29.630 0.00 0.00 38.55 3.82
5145 5582 3.502211 GTGGTGATTGACCTGGTTACTTG 59.498 47.826 0.00 0.00 46.32 3.16
5146 5583 3.137544 TGTGGTGATTGACCTGGTTACTT 59.862 43.478 0.00 0.00 46.32 2.24
5147 5584 2.708861 TGTGGTGATTGACCTGGTTACT 59.291 45.455 0.00 0.00 46.32 2.24
5148 5585 3.134574 TGTGGTGATTGACCTGGTTAC 57.865 47.619 0.00 0.00 46.32 2.50
5149 5586 3.329225 TCATGTGGTGATTGACCTGGTTA 59.671 43.478 0.00 0.00 46.32 2.85
5156 5593 5.630680 GTCAATGTTTCATGTGGTGATTGAC 59.369 40.000 16.75 16.75 41.80 3.18
5181 5618 0.249911 GTCGCCGGGCAGATCTAATT 60.250 55.000 20.71 0.00 0.00 1.40
5182 5619 1.367840 GTCGCCGGGCAGATCTAAT 59.632 57.895 20.71 0.00 0.00 1.73
5220 5658 3.317711 TCGTGTGCAATGAAGTTTGGATT 59.682 39.130 0.00 0.00 29.37 3.01
5230 5668 0.036105 ATCCTGCTCGTGTGCAATGA 60.036 50.000 0.00 0.00 42.83 2.57
5287 5725 2.174854 GGGGCAGTGGTGGAGTATATTT 59.825 50.000 0.00 0.00 0.00 1.40
5289 5727 1.345009 TGGGGCAGTGGTGGAGTATAT 60.345 52.381 0.00 0.00 0.00 0.86
5307 5745 1.544982 GCAGATGGTGAGATGGGATGG 60.545 57.143 0.00 0.00 0.00 3.51
5308 5746 1.420514 AGCAGATGGTGAGATGGGATG 59.579 52.381 0.00 0.00 0.00 3.51
5309 5747 1.817087 AGCAGATGGTGAGATGGGAT 58.183 50.000 0.00 0.00 0.00 3.85
5310 5748 1.211212 CAAGCAGATGGTGAGATGGGA 59.789 52.381 0.00 0.00 0.00 4.37
5311 5749 1.676746 CAAGCAGATGGTGAGATGGG 58.323 55.000 0.00 0.00 0.00 4.00
5312 5750 1.022735 GCAAGCAGATGGTGAGATGG 58.977 55.000 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.