Multiple sequence alignment - TraesCS4D01G027600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G027600 chr4D 100.000 5161 0 0 1 5161 12407728 12412888 0.000000e+00 9531.0
1 TraesCS4D01G027600 chr4D 86.893 206 25 2 2 205 418387043 418386838 4.020000e-56 230.0
2 TraesCS4D01G027600 chr4D 83.730 252 25 7 4926 5161 12407463 12407212 1.870000e-54 224.0
3 TraesCS4D01G027600 chr4D 83.730 252 25 4 4564 4804 433111655 433111409 1.870000e-54 224.0
4 TraesCS4D01G027600 chr4D 84.466 206 30 2 2 205 375175240 375175035 8.760000e-48 202.0
5 TraesCS4D01G027600 chr4D 79.126 206 33 6 4556 4752 113170175 113170379 3.240000e-27 134.0
6 TraesCS4D01G027600 chr4D 90.667 75 6 1 4415 4488 12371419 12371345 1.180000e-16 99.0
7 TraesCS4D01G027600 chr4D 88.710 62 7 0 2040 2101 509171429 509171490 5.540000e-10 76.8
8 TraesCS4D01G027600 chr4A 93.810 1567 87 3 3009 4568 590278579 590277016 0.000000e+00 2348.0
9 TraesCS4D01G027600 chr4A 91.922 978 42 21 803 1760 590280852 590279892 0.000000e+00 1334.0
10 TraesCS4D01G027600 chr4A 96.429 280 9 1 4883 5161 590276359 590276080 1.310000e-125 460.0
11 TraesCS4D01G027600 chr4A 84.211 209 26 7 1 205 198911588 198911793 4.080000e-46 196.0
12 TraesCS4D01G027600 chr4A 86.207 145 11 3 269 406 590281114 590280972 1.160000e-31 148.0
13 TraesCS4D01G027600 chr4A 91.765 85 6 1 4383 4466 590281503 590281587 3.270000e-22 117.0
14 TraesCS4D01G027600 chr4A 95.161 62 3 0 2040 2101 632174900 632174839 1.180000e-16 99.0
15 TraesCS4D01G027600 chr4A 90.000 60 6 0 2042 2101 622124009 622123950 1.540000e-10 78.7
16 TraesCS4D01G027600 chr4A 93.182 44 3 0 4760 4803 101610641 101610684 1.200000e-06 65.8
17 TraesCS4D01G027600 chr4B 89.141 1722 83 35 314 2025 22276909 22275282 0.000000e+00 2049.0
18 TraesCS4D01G027600 chr4B 88.896 1540 98 39 2987 4485 22274187 22272680 0.000000e+00 1829.0
19 TraesCS4D01G027600 chr4B 90.484 641 46 5 3298 3924 22527591 22528230 0.000000e+00 832.0
20 TraesCS4D01G027600 chr4B 81.909 503 46 15 4013 4485 22528228 22528715 2.920000e-102 383.0
21 TraesCS4D01G027600 chr4B 82.353 255 29 7 4923 5161 22278580 22278834 1.880000e-49 207.0
22 TraesCS4D01G027600 chr4B 89.308 159 11 5 4883 5037 22272688 22272532 1.470000e-45 195.0
23 TraesCS4D01G027600 chr4B 88.608 158 17 1 2722 2878 22274508 22274351 1.900000e-44 191.0
24 TraesCS4D01G027600 chr4B 88.034 117 8 4 2231 2341 22275046 22274930 3.240000e-27 134.0
25 TraesCS4D01G027600 chr4B 89.216 102 6 1 2604 2705 22274659 22274563 7.020000e-24 122.0
26 TraesCS4D01G027600 chr4B 90.000 70 7 0 2040 2109 18717033 18716964 1.980000e-14 91.6
27 TraesCS4D01G027600 chr4B 100.000 41 0 0 267 307 22276942 22276902 5.540000e-10 76.8
28 TraesCS4D01G027600 chr5D 78.850 487 64 31 1285 1747 400281364 400280893 5.050000e-75 292.0
29 TraesCS4D01G027600 chr5D 86.331 139 19 0 3031 3169 400280883 400280745 8.950000e-33 152.0
30 TraesCS4D01G027600 chr5D 90.000 60 6 0 2042 2101 482109498 482109439 1.540000e-10 78.7
31 TraesCS4D01G027600 chr5B 78.439 487 66 30 1285 1747 480294618 480294147 1.090000e-71 281.0
32 TraesCS4D01G027600 chr5B 90.654 107 10 0 3063 3169 480294105 480293999 5.390000e-30 143.0
33 TraesCS4D01G027600 chr5A 78.059 474 70 27 1296 1747 505613075 505612614 8.520000e-68 268.0
34 TraesCS4D01G027600 chr5A 84.892 139 21 0 3031 3169 505612604 505612466 1.940000e-29 141.0
35 TraesCS4D01G027600 chr3D 76.471 476 68 34 1295 1746 554063572 554064027 8.700000e-53 219.0
36 TraesCS4D01G027600 chr3D 83.810 210 30 4 2 208 23884265 23884057 4.080000e-46 196.0
37 TraesCS4D01G027600 chr3D 84.138 145 19 4 4567 4709 427057067 427056925 2.510000e-28 137.0
38 TraesCS4D01G027600 chr3D 88.710 62 7 0 2040 2101 10839103 10839042 5.540000e-10 76.8
39 TraesCS4D01G027600 chr7D 76.050 476 72 34 1295 1747 77074946 77075402 5.240000e-50 209.0
40 TraesCS4D01G027600 chr7D 76.645 304 63 6 3028 3327 251374606 251374307 1.490000e-35 161.0
41 TraesCS4D01G027600 chr7D 82.432 148 19 5 4559 4700 14626119 14626265 7.020000e-24 122.0
42 TraesCS4D01G027600 chr7D 86.957 69 4 1 4735 4803 518085198 518085135 7.170000e-09 73.1
43 TraesCS4D01G027600 chr7D 88.235 51 5 1 4756 4806 576193231 576193182 5.580000e-05 60.2
44 TraesCS4D01G027600 chr2B 85.500 200 27 2 2 199 22005277 22005476 1.880000e-49 207.0
45 TraesCS4D01G027600 chr2B 78.261 253 43 12 1510 1756 675355938 675355692 8.950000e-33 152.0
46 TraesCS4D01G027600 chr1B 84.951 206 29 2 6 209 443589354 443589149 1.880000e-49 207.0
47 TraesCS4D01G027600 chr1B 84.186 215 27 7 2 213 577609871 577609661 8.760000e-48 202.0
48 TraesCS4D01G027600 chr1B 92.754 69 5 0 2040 2108 623393957 623394025 3.290000e-17 100.0
49 TraesCS4D01G027600 chr3B 85.149 202 27 3 7 206 614203033 614203233 2.440000e-48 204.0
50 TraesCS4D01G027600 chr3B 79.348 184 32 4 4567 4749 746360270 746360448 1.950000e-24 124.0
51 TraesCS4D01G027600 chr2D 83.810 210 31 3 2 209 374104044 374103836 4.080000e-46 196.0
52 TraesCS4D01G027600 chr2D 79.447 253 40 12 1510 1756 564095252 564095006 8.890000e-38 169.0
53 TraesCS4D01G027600 chr2D 88.235 68 6 2 2042 2109 635871524 635871589 4.280000e-11 80.5
54 TraesCS4D01G027600 chr2D 88.889 45 3 2 4760 4803 531440021 531440064 3.000000e-03 54.7
55 TraesCS4D01G027600 chr7A 80.169 237 41 4 3028 3261 270043064 270043297 6.870000e-39 172.0
56 TraesCS4D01G027600 chr7A 87.692 65 8 0 2042 2106 650029892 650029956 5.540000e-10 76.8
57 TraesCS4D01G027600 chr7B 76.974 304 62 6 3028 3327 228363345 228363046 3.200000e-37 167.0
58 TraesCS4D01G027600 chrUn 81.633 196 24 8 4567 4753 23672515 23672707 8.950000e-33 152.0
59 TraesCS4D01G027600 chr1D 80.412 194 28 7 4567 4752 188464207 188464398 6.970000e-29 139.0
60 TraesCS4D01G027600 chr1D 79.602 201 24 9 4566 4752 409016278 409016081 1.510000e-25 128.0
61 TraesCS4D01G027600 chr1D 77.907 172 24 3 4567 4738 26292004 26291847 1.530000e-15 95.3
62 TraesCS4D01G027600 chr1D 92.500 40 3 0 4760 4799 423271129 423271168 2.010000e-04 58.4
63 TraesCS4D01G027600 chr6D 78.392 199 27 11 4567 4752 323051435 323051240 1.170000e-21 115.0
64 TraesCS4D01G027600 chr6D 95.455 44 2 0 4760 4803 71025018 71024975 2.580000e-08 71.3
65 TraesCS4D01G027600 chr1A 74.457 184 36 9 4628 4806 107644665 107644842 9.270000e-08 69.4
66 TraesCS4D01G027600 chr6A 82.857 70 12 0 4735 4804 592567936 592568005 4.310000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G027600 chr4D 12407728 12412888 5160 False 9531.000000 9531 100.000000 1 5161 1 chr4D.!!$F1 5160
1 TraesCS4D01G027600 chr4A 590276080 590281114 5034 True 1072.500000 2348 92.092000 269 5161 4 chr4A.!!$R3 4892
2 TraesCS4D01G027600 chr4B 22272532 22276942 4410 True 656.685714 2049 90.457571 267 5037 7 chr4B.!!$R2 4770
3 TraesCS4D01G027600 chr4B 22527591 22528715 1124 False 607.500000 832 86.196500 3298 4485 2 chr4B.!!$F2 1187
4 TraesCS4D01G027600 chr5D 400280745 400281364 619 True 222.000000 292 82.590500 1285 3169 2 chr5D.!!$R2 1884
5 TraesCS4D01G027600 chr5B 480293999 480294618 619 True 212.000000 281 84.546500 1285 3169 2 chr5B.!!$R1 1884
6 TraesCS4D01G027600 chr5A 505612466 505613075 609 True 204.500000 268 81.475500 1296 3169 2 chr5A.!!$R1 1873

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
612 618 0.037232 CCACTTTCCTCTCGACACCC 60.037 60.0 0.0 0.0 0.0 4.61 F
1772 1818 0.324943 GGTCTGCCTTCCTGCTGTAA 59.675 55.0 0.0 0.0 0.0 2.41 F
2463 3092 0.033504 TTCTTGACACGGTCCAGCTC 59.966 55.0 0.0 0.0 0.0 4.09 F
2745 3420 0.109781 CCGAAAAATCTGGTGGTGCG 60.110 55.0 0.0 0.0 0.0 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2109 2329 0.036010 AACTCTTGATGCCACTCCGG 60.036 55.0 0.00 0.00 38.11 5.14 R
2659 3295 0.249073 CATACCCAGACCTCGCTTCG 60.249 60.0 0.00 0.00 0.00 3.79 R
3667 4707 0.468648 CCATGAGCAGCTCCATCTCA 59.531 55.0 20.16 0.66 40.62 3.27 R
4547 5631 0.035056 AATCACAGGGAAAGGGAGCG 60.035 55.0 0.00 0.00 0.00 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.371809 TTTCCCGAGATCCAAATTTAATCG 57.628 37.500 0.00 0.00 0.00 3.34
24 25 5.031066 TCCCGAGATCCAAATTTAATCGT 57.969 39.130 0.00 0.00 0.00 3.73
25 26 6.164417 TCCCGAGATCCAAATTTAATCGTA 57.836 37.500 0.00 0.00 0.00 3.43
26 27 6.584488 TCCCGAGATCCAAATTTAATCGTAA 58.416 36.000 0.00 0.00 0.00 3.18
27 28 7.049133 TCCCGAGATCCAAATTTAATCGTAAA 58.951 34.615 0.00 0.00 33.76 2.01
28 29 7.717875 TCCCGAGATCCAAATTTAATCGTAAAT 59.282 33.333 0.00 0.00 40.88 1.40
43 44 9.896263 TTAATCGTAAATTTAACCAACAAGACC 57.104 29.630 0.00 0.00 0.00 3.85
44 45 5.988092 TCGTAAATTTAACCAACAAGACCG 58.012 37.500 0.00 0.00 0.00 4.79
45 46 5.757320 TCGTAAATTTAACCAACAAGACCGA 59.243 36.000 0.00 0.00 0.00 4.69
46 47 6.427547 TCGTAAATTTAACCAACAAGACCGAT 59.572 34.615 0.00 0.00 0.00 4.18
47 48 7.041235 TCGTAAATTTAACCAACAAGACCGATT 60.041 33.333 0.00 0.00 0.00 3.34
48 49 7.060174 CGTAAATTTAACCAACAAGACCGATTG 59.940 37.037 0.00 0.00 36.22 2.67
49 50 3.907894 TTAACCAACAAGACCGATTGC 57.092 42.857 0.00 0.00 33.28 3.56
50 51 1.981256 AACCAACAAGACCGATTGCT 58.019 45.000 0.00 0.00 33.28 3.91
51 52 1.523758 ACCAACAAGACCGATTGCTC 58.476 50.000 0.00 0.00 33.28 4.26
52 53 0.443869 CCAACAAGACCGATTGCTCG 59.556 55.000 0.00 0.00 44.62 5.03
62 63 2.697431 CGATTGCTCGGGAACAAAAA 57.303 45.000 0.00 0.00 41.27 1.94
63 64 3.216147 CGATTGCTCGGGAACAAAAAT 57.784 42.857 0.00 0.00 41.27 1.82
64 65 3.574614 CGATTGCTCGGGAACAAAAATT 58.425 40.909 0.00 0.00 41.27 1.82
65 66 4.728534 CGATTGCTCGGGAACAAAAATTA 58.271 39.130 0.00 0.00 41.27 1.40
66 67 5.339990 CGATTGCTCGGGAACAAAAATTAT 58.660 37.500 0.00 0.00 41.27 1.28
67 68 6.491394 CGATTGCTCGGGAACAAAAATTATA 58.509 36.000 0.00 0.00 41.27 0.98
68 69 7.138736 CGATTGCTCGGGAACAAAAATTATAT 58.861 34.615 0.00 0.00 41.27 0.86
69 70 7.323656 CGATTGCTCGGGAACAAAAATTATATC 59.676 37.037 0.00 0.00 41.27 1.63
70 71 7.397892 TTGCTCGGGAACAAAAATTATATCA 57.602 32.000 0.00 0.00 0.00 2.15
71 72 6.791303 TGCTCGGGAACAAAAATTATATCAC 58.209 36.000 0.00 0.00 0.00 3.06
72 73 6.601613 TGCTCGGGAACAAAAATTATATCACT 59.398 34.615 0.00 0.00 0.00 3.41
73 74 6.912591 GCTCGGGAACAAAAATTATATCACTG 59.087 38.462 0.00 0.00 0.00 3.66
74 75 7.201696 GCTCGGGAACAAAAATTATATCACTGA 60.202 37.037 0.00 0.00 0.00 3.41
75 76 8.568676 TCGGGAACAAAAATTATATCACTGAA 57.431 30.769 0.00 0.00 0.00 3.02
76 77 9.184523 TCGGGAACAAAAATTATATCACTGAAT 57.815 29.630 0.00 0.00 0.00 2.57
77 78 9.801873 CGGGAACAAAAATTATATCACTGAATT 57.198 29.630 0.00 0.00 0.00 2.17
103 104 9.173021 TCATATTGAAAATACGAATTCAGTGGT 57.827 29.630 6.22 0.00 36.93 4.16
114 115 9.730420 ATACGAATTCAGTGGTATAATTTTTGC 57.270 29.630 6.22 0.00 0.00 3.68
115 116 7.033185 ACGAATTCAGTGGTATAATTTTTGCC 58.967 34.615 6.22 0.00 0.00 4.52
116 117 6.475402 CGAATTCAGTGGTATAATTTTTGCCC 59.525 38.462 6.22 0.00 0.00 5.36
117 118 5.669164 TTCAGTGGTATAATTTTTGCCCC 57.331 39.130 0.00 0.00 0.00 5.80
118 119 3.697045 TCAGTGGTATAATTTTTGCCCCG 59.303 43.478 0.00 0.00 0.00 5.73
119 120 3.445805 CAGTGGTATAATTTTTGCCCCGT 59.554 43.478 0.00 0.00 0.00 5.28
120 121 3.697542 AGTGGTATAATTTTTGCCCCGTC 59.302 43.478 0.00 0.00 0.00 4.79
121 122 2.683867 TGGTATAATTTTTGCCCCGTCG 59.316 45.455 0.00 0.00 0.00 5.12
122 123 2.542205 GGTATAATTTTTGCCCCGTCGC 60.542 50.000 0.00 0.00 0.00 5.19
123 124 1.178276 ATAATTTTTGCCCCGTCGCA 58.822 45.000 0.00 0.00 36.85 5.10
124 125 0.959553 TAATTTTTGCCCCGTCGCAA 59.040 45.000 2.51 2.51 46.72 4.85
131 132 4.143333 CCCCGTCGCAATCGGTCT 62.143 66.667 9.66 0.00 45.63 3.85
132 133 2.582498 CCCGTCGCAATCGGTCTC 60.582 66.667 9.66 0.00 45.63 3.36
133 134 2.582498 CCGTCGCAATCGGTCTCC 60.582 66.667 3.53 0.00 42.62 3.71
134 135 2.180769 CGTCGCAATCGGTCTCCA 59.819 61.111 0.00 0.00 36.13 3.86
135 136 2.158959 CGTCGCAATCGGTCTCCAC 61.159 63.158 0.00 0.00 36.13 4.02
136 137 1.080093 GTCGCAATCGGTCTCCACA 60.080 57.895 0.00 0.00 36.13 4.17
137 138 1.078759 GTCGCAATCGGTCTCCACAG 61.079 60.000 0.00 0.00 36.13 3.66
138 139 2.456119 CGCAATCGGTCTCCACAGC 61.456 63.158 0.00 0.00 0.00 4.40
139 140 1.078848 GCAATCGGTCTCCACAGCT 60.079 57.895 0.00 0.00 0.00 4.24
140 141 0.175760 GCAATCGGTCTCCACAGCTA 59.824 55.000 0.00 0.00 0.00 3.32
141 142 1.405526 GCAATCGGTCTCCACAGCTAA 60.406 52.381 0.00 0.00 0.00 3.09
142 143 2.935238 GCAATCGGTCTCCACAGCTAAA 60.935 50.000 0.00 0.00 0.00 1.85
143 144 3.535561 CAATCGGTCTCCACAGCTAAAT 58.464 45.455 0.00 0.00 0.00 1.40
144 145 3.914426 ATCGGTCTCCACAGCTAAATT 57.086 42.857 0.00 0.00 0.00 1.82
145 146 3.695830 TCGGTCTCCACAGCTAAATTT 57.304 42.857 0.00 0.00 0.00 1.82
146 147 4.811969 TCGGTCTCCACAGCTAAATTTA 57.188 40.909 0.00 0.00 0.00 1.40
147 148 4.501071 TCGGTCTCCACAGCTAAATTTAC 58.499 43.478 0.00 0.00 0.00 2.01
148 149 3.306166 CGGTCTCCACAGCTAAATTTACG 59.694 47.826 0.00 0.00 0.00 3.18
149 150 3.621715 GGTCTCCACAGCTAAATTTACGG 59.378 47.826 0.00 0.00 0.00 4.02
150 151 4.251268 GTCTCCACAGCTAAATTTACGGT 58.749 43.478 0.00 0.00 0.00 4.83
151 152 4.694037 GTCTCCACAGCTAAATTTACGGTT 59.306 41.667 0.00 0.00 0.00 4.44
152 153 5.870978 GTCTCCACAGCTAAATTTACGGTTA 59.129 40.000 0.00 0.00 0.00 2.85
153 154 6.369615 GTCTCCACAGCTAAATTTACGGTTAA 59.630 38.462 0.00 0.00 0.00 2.01
154 155 6.935771 TCTCCACAGCTAAATTTACGGTTAAA 59.064 34.615 0.00 0.00 0.00 1.52
155 156 7.118680 TCTCCACAGCTAAATTTACGGTTAAAG 59.881 37.037 0.00 0.00 30.58 1.85
156 157 6.711645 TCCACAGCTAAATTTACGGTTAAAGT 59.288 34.615 0.00 0.00 30.58 2.66
157 158 7.229106 TCCACAGCTAAATTTACGGTTAAAGTT 59.771 33.333 0.00 0.00 38.62 2.66
158 159 7.325097 CCACAGCTAAATTTACGGTTAAAGTTG 59.675 37.037 0.00 0.00 36.44 3.16
159 160 8.071368 CACAGCTAAATTTACGGTTAAAGTTGA 58.929 33.333 0.00 0.00 36.44 3.18
160 161 8.623030 ACAGCTAAATTTACGGTTAAAGTTGAA 58.377 29.630 0.00 0.00 36.44 2.69
161 162 9.620660 CAGCTAAATTTACGGTTAAAGTTGAAT 57.379 29.630 0.00 0.00 36.44 2.57
162 163 9.836076 AGCTAAATTTACGGTTAAAGTTGAATC 57.164 29.630 0.00 0.00 36.44 2.52
163 164 9.836076 GCTAAATTTACGGTTAAAGTTGAATCT 57.164 29.630 0.00 0.00 36.44 2.40
165 166 8.944212 AAATTTACGGTTAAAGTTGAATCTCG 57.056 30.769 0.00 0.00 34.88 4.04
166 167 7.662604 ATTTACGGTTAAAGTTGAATCTCGT 57.337 32.000 0.00 0.00 30.58 4.18
167 168 4.985044 ACGGTTAAAGTTGAATCTCGTG 57.015 40.909 0.00 0.00 0.00 4.35
168 169 4.624015 ACGGTTAAAGTTGAATCTCGTGA 58.376 39.130 0.00 0.00 0.00 4.35
169 170 5.051816 ACGGTTAAAGTTGAATCTCGTGAA 58.948 37.500 0.00 0.00 0.00 3.18
170 171 5.176958 ACGGTTAAAGTTGAATCTCGTGAAG 59.823 40.000 0.00 0.00 0.00 3.02
171 172 5.383130 GGTTAAAGTTGAATCTCGTGAAGC 58.617 41.667 0.00 0.00 0.00 3.86
172 173 5.049680 GGTTAAAGTTGAATCTCGTGAAGCA 60.050 40.000 0.00 0.00 0.00 3.91
173 174 4.474226 AAAGTTGAATCTCGTGAAGCAC 57.526 40.909 0.00 0.00 0.00 4.40
183 184 4.045771 TGAAGCACGGACGCGCTA 62.046 61.111 5.73 0.00 37.54 4.26
184 185 3.542742 GAAGCACGGACGCGCTAC 61.543 66.667 5.73 0.00 37.54 3.58
185 186 4.351938 AAGCACGGACGCGCTACA 62.352 61.111 5.73 0.00 37.54 2.74
186 187 3.642778 AAGCACGGACGCGCTACAT 62.643 57.895 5.73 0.00 37.54 2.29
187 188 3.186047 GCACGGACGCGCTACATT 61.186 61.111 5.73 0.00 0.00 2.71
188 189 1.874915 GCACGGACGCGCTACATTA 60.875 57.895 5.73 0.00 0.00 1.90
189 190 1.213094 GCACGGACGCGCTACATTAT 61.213 55.000 5.73 0.00 0.00 1.28
190 191 0.502695 CACGGACGCGCTACATTATG 59.497 55.000 5.73 0.00 0.00 1.90
191 192 1.213094 ACGGACGCGCTACATTATGC 61.213 55.000 5.73 0.00 0.00 3.14
192 193 1.212455 CGGACGCGCTACATTATGCA 61.212 55.000 5.73 0.00 0.00 3.96
193 194 0.508641 GGACGCGCTACATTATGCAG 59.491 55.000 5.73 0.00 0.00 4.41
194 195 1.209128 GACGCGCTACATTATGCAGT 58.791 50.000 5.73 0.00 0.00 4.40
195 196 0.930310 ACGCGCTACATTATGCAGTG 59.070 50.000 5.73 1.87 0.00 3.66
196 197 0.233074 CGCGCTACATTATGCAGTGG 59.767 55.000 5.56 0.00 0.00 4.00
197 198 1.581934 GCGCTACATTATGCAGTGGA 58.418 50.000 0.00 0.00 0.00 4.02
198 199 1.528586 GCGCTACATTATGCAGTGGAG 59.471 52.381 0.00 4.77 0.00 3.86
199 200 2.803133 GCGCTACATTATGCAGTGGAGA 60.803 50.000 11.73 0.00 0.00 3.71
200 201 3.055591 CGCTACATTATGCAGTGGAGAG 58.944 50.000 11.73 5.72 0.00 3.20
201 202 3.243535 CGCTACATTATGCAGTGGAGAGA 60.244 47.826 11.73 0.00 28.68 3.10
202 203 4.305769 GCTACATTATGCAGTGGAGAGAG 58.694 47.826 11.73 0.00 0.00 3.20
203 204 4.202202 GCTACATTATGCAGTGGAGAGAGT 60.202 45.833 11.73 0.00 0.00 3.24
204 205 5.010112 GCTACATTATGCAGTGGAGAGAGTA 59.990 44.000 11.73 0.00 0.00 2.59
205 206 5.269505 ACATTATGCAGTGGAGAGAGTAC 57.730 43.478 0.00 0.00 0.00 2.73
206 207 4.959210 ACATTATGCAGTGGAGAGAGTACT 59.041 41.667 0.00 0.00 0.00 2.73
207 208 6.129874 ACATTATGCAGTGGAGAGAGTACTA 58.870 40.000 0.00 0.00 0.00 1.82
208 209 6.780031 ACATTATGCAGTGGAGAGAGTACTAT 59.220 38.462 0.00 0.00 0.00 2.12
209 210 7.945109 ACATTATGCAGTGGAGAGAGTACTATA 59.055 37.037 0.00 0.00 0.00 1.31
210 211 7.747155 TTATGCAGTGGAGAGAGTACTATAC 57.253 40.000 0.00 0.00 0.00 1.47
211 212 5.375283 TGCAGTGGAGAGAGTACTATACT 57.625 43.478 0.00 0.00 42.86 2.12
212 213 5.756918 TGCAGTGGAGAGAGTACTATACTT 58.243 41.667 0.00 0.00 39.59 2.24
213 214 6.188407 TGCAGTGGAGAGAGTACTATACTTT 58.812 40.000 0.00 0.00 39.59 2.66
214 215 6.095580 TGCAGTGGAGAGAGTACTATACTTTG 59.904 42.308 0.00 0.00 39.59 2.77
215 216 6.500041 CAGTGGAGAGAGTACTATACTTTGC 58.500 44.000 0.00 0.00 39.59 3.68
216 217 6.095580 CAGTGGAGAGAGTACTATACTTTGCA 59.904 42.308 0.00 0.00 39.59 4.08
217 218 6.663953 AGTGGAGAGAGTACTATACTTTGCAA 59.336 38.462 0.00 0.00 39.59 4.08
218 219 6.975772 GTGGAGAGAGTACTATACTTTGCAAG 59.024 42.308 0.00 0.00 39.59 4.01
219 220 5.980715 GGAGAGAGTACTATACTTTGCAAGC 59.019 44.000 0.00 0.00 39.59 4.01
220 221 6.183360 GGAGAGAGTACTATACTTTGCAAGCT 60.183 42.308 0.00 0.00 39.59 3.74
221 222 7.013464 GGAGAGAGTACTATACTTTGCAAGCTA 59.987 40.741 0.00 0.00 39.59 3.32
222 223 8.472007 AGAGAGTACTATACTTTGCAAGCTAT 57.528 34.615 0.00 1.38 39.59 2.97
223 224 8.356657 AGAGAGTACTATACTTTGCAAGCTATG 58.643 37.037 0.00 0.00 39.59 2.23
224 225 7.437748 AGAGTACTATACTTTGCAAGCTATGG 58.562 38.462 0.00 3.54 39.59 2.74
225 226 7.287927 AGAGTACTATACTTTGCAAGCTATGGA 59.712 37.037 12.80 0.00 39.59 3.41
226 227 7.437748 AGTACTATACTTTGCAAGCTATGGAG 58.562 38.462 12.80 3.83 34.86 3.86
227 228 5.615289 ACTATACTTTGCAAGCTATGGAGG 58.385 41.667 12.80 0.00 0.00 4.30
228 229 2.134789 ACTTTGCAAGCTATGGAGGG 57.865 50.000 0.00 0.00 0.00 4.30
229 230 0.743097 CTTTGCAAGCTATGGAGGGC 59.257 55.000 0.00 0.00 0.00 5.19
230 231 1.031571 TTTGCAAGCTATGGAGGGCG 61.032 55.000 0.00 0.00 0.00 6.13
231 232 1.909459 TTGCAAGCTATGGAGGGCGA 61.909 55.000 0.00 0.00 0.00 5.54
232 233 1.072159 GCAAGCTATGGAGGGCGAT 59.928 57.895 0.00 0.00 0.00 4.58
233 234 0.952984 GCAAGCTATGGAGGGCGATC 60.953 60.000 0.00 0.00 0.00 3.69
234 235 0.668706 CAAGCTATGGAGGGCGATCG 60.669 60.000 11.69 11.69 0.00 3.69
235 236 1.115930 AAGCTATGGAGGGCGATCGT 61.116 55.000 17.81 0.00 0.00 3.73
236 237 1.115930 AGCTATGGAGGGCGATCGTT 61.116 55.000 17.81 2.62 0.00 3.85
237 238 0.946221 GCTATGGAGGGCGATCGTTG 60.946 60.000 17.81 0.00 0.00 4.10
238 239 0.673985 CTATGGAGGGCGATCGTTGA 59.326 55.000 17.81 0.00 0.00 3.18
239 240 0.387929 TATGGAGGGCGATCGTTGAC 59.612 55.000 17.81 6.48 0.00 3.18
240 241 1.613317 ATGGAGGGCGATCGTTGACA 61.613 55.000 17.81 10.17 0.00 3.58
241 242 1.810030 GGAGGGCGATCGTTGACAC 60.810 63.158 17.81 0.14 0.00 3.67
242 243 1.810030 GAGGGCGATCGTTGACACC 60.810 63.158 17.81 7.82 0.00 4.16
243 244 2.227089 GAGGGCGATCGTTGACACCT 62.227 60.000 17.81 13.90 0.00 4.00
244 245 1.810030 GGGCGATCGTTGACACCTC 60.810 63.158 17.81 0.00 0.00 3.85
245 246 1.810030 GGCGATCGTTGACACCTCC 60.810 63.158 17.81 1.71 0.00 4.30
246 247 2.158959 GCGATCGTTGACACCTCCG 61.159 63.158 17.81 0.00 0.00 4.63
247 248 1.504900 CGATCGTTGACACCTCCGA 59.495 57.895 7.03 0.00 0.00 4.55
248 249 0.797249 CGATCGTTGACACCTCCGAC 60.797 60.000 7.03 0.00 31.43 4.79
249 250 0.526662 GATCGTTGACACCTCCGACT 59.473 55.000 0.00 0.00 31.43 4.18
250 251 0.966920 ATCGTTGACACCTCCGACTT 59.033 50.000 0.00 0.00 31.43 3.01
251 252 0.748450 TCGTTGACACCTCCGACTTT 59.252 50.000 0.00 0.00 0.00 2.66
252 253 0.859232 CGTTGACACCTCCGACTTTG 59.141 55.000 0.00 0.00 0.00 2.77
253 254 1.805120 CGTTGACACCTCCGACTTTGT 60.805 52.381 0.00 0.00 0.00 2.83
254 255 2.285977 GTTGACACCTCCGACTTTGTT 58.714 47.619 0.00 0.00 0.00 2.83
255 256 3.460103 GTTGACACCTCCGACTTTGTTA 58.540 45.455 0.00 0.00 0.00 2.41
256 257 3.823281 TGACACCTCCGACTTTGTTAA 57.177 42.857 0.00 0.00 0.00 2.01
257 258 4.345859 TGACACCTCCGACTTTGTTAAT 57.654 40.909 0.00 0.00 0.00 1.40
258 259 4.312443 TGACACCTCCGACTTTGTTAATC 58.688 43.478 0.00 0.00 0.00 1.75
259 260 3.671716 ACACCTCCGACTTTGTTAATCC 58.328 45.455 0.00 0.00 0.00 3.01
260 261 3.071892 ACACCTCCGACTTTGTTAATCCA 59.928 43.478 0.00 0.00 0.00 3.41
261 262 4.261801 CACCTCCGACTTTGTTAATCCAT 58.738 43.478 0.00 0.00 0.00 3.41
262 263 4.332819 CACCTCCGACTTTGTTAATCCATC 59.667 45.833 0.00 0.00 0.00 3.51
263 264 4.019681 ACCTCCGACTTTGTTAATCCATCA 60.020 41.667 0.00 0.00 0.00 3.07
264 265 5.126067 CCTCCGACTTTGTTAATCCATCAT 58.874 41.667 0.00 0.00 0.00 2.45
265 266 5.590259 CCTCCGACTTTGTTAATCCATCATT 59.410 40.000 0.00 0.00 0.00 2.57
426 432 0.181350 GATCGAGGGGACAAGCCATT 59.819 55.000 0.00 0.00 38.95 3.16
428 434 2.409870 CGAGGGGACAAGCCATTGC 61.410 63.158 0.00 0.00 40.27 3.56
442 448 0.309922 CATTGCATGGATCCAGCGAC 59.690 55.000 21.33 9.64 0.00 5.19
496 502 0.375106 GCAAGCTGCAGTAACGGATC 59.625 55.000 16.64 0.00 44.26 3.36
499 505 0.461961 AGCTGCAGTAACGGATCCTC 59.538 55.000 16.64 0.00 0.00 3.71
501 507 0.249073 CTGCAGTAACGGATCCTCGG 60.249 60.000 10.75 0.00 0.00 4.63
502 508 0.681887 TGCAGTAACGGATCCTCGGA 60.682 55.000 10.75 0.00 0.00 4.55
503 509 0.458669 GCAGTAACGGATCCTCGGAA 59.541 55.000 10.75 0.00 0.00 4.30
504 510 1.134907 GCAGTAACGGATCCTCGGAAA 60.135 52.381 10.75 0.00 0.00 3.13
505 511 2.810650 CAGTAACGGATCCTCGGAAAG 58.189 52.381 10.75 0.00 0.00 2.62
507 513 1.136500 GTAACGGATCCTCGGAAAGCT 59.864 52.381 10.75 0.00 0.00 3.74
509 515 1.258445 ACGGATCCTCGGAAAGCTGT 61.258 55.000 10.75 0.00 0.00 4.40
510 516 0.528684 CGGATCCTCGGAAAGCTGTC 60.529 60.000 10.75 0.00 0.00 3.51
517 523 2.046217 GGAAAGCTGTCCGGTCCC 60.046 66.667 7.32 0.00 0.00 4.46
519 525 1.375326 GAAAGCTGTCCGGTCCCTT 59.625 57.895 0.00 0.00 0.00 3.95
520 526 0.673956 GAAAGCTGTCCGGTCCCTTC 60.674 60.000 0.00 0.00 0.00 3.46
521 527 1.128188 AAAGCTGTCCGGTCCCTTCT 61.128 55.000 0.00 0.00 0.00 2.85
522 528 1.128188 AAGCTGTCCGGTCCCTTCTT 61.128 55.000 0.00 0.00 0.00 2.52
523 529 1.079057 GCTGTCCGGTCCCTTCTTC 60.079 63.158 0.00 0.00 0.00 2.87
524 530 1.545706 GCTGTCCGGTCCCTTCTTCT 61.546 60.000 0.00 0.00 0.00 2.85
525 531 0.977395 CTGTCCGGTCCCTTCTTCTT 59.023 55.000 0.00 0.00 0.00 2.52
545 551 7.730784 TCTTCTTCTTCTTCTTCTTCTTCCCTA 59.269 37.037 0.00 0.00 0.00 3.53
547 553 9.548631 TTCTTCTTCTTCTTCTTCTTCCCTATA 57.451 33.333 0.00 0.00 0.00 1.31
550 556 5.517322 TCTTCTTCTTCTTCCCTATACGC 57.483 43.478 0.00 0.00 0.00 4.42
551 557 4.341520 TCTTCTTCTTCTTCCCTATACGCC 59.658 45.833 0.00 0.00 0.00 5.68
552 558 2.621998 TCTTCTTCTTCCCTATACGCCG 59.378 50.000 0.00 0.00 0.00 6.46
553 559 1.325355 TCTTCTTCCCTATACGCCGG 58.675 55.000 0.00 0.00 0.00 6.13
554 560 0.319641 CTTCTTCCCTATACGCCGGC 60.320 60.000 19.07 19.07 0.00 6.13
560 566 1.375523 CCTATACGCCGGCCCAATC 60.376 63.158 23.46 0.00 0.00 2.67
564 570 2.781595 ATACGCCGGCCCAATCGATC 62.782 60.000 23.46 0.00 0.00 3.69
581 587 4.477975 CGAGAGGACGTCGGCACC 62.478 72.222 9.92 0.00 33.66 5.01
595 601 2.202395 GCACCAAGCAAAGCTCCCA 61.202 57.895 0.00 0.00 44.79 4.37
612 618 0.037232 CCACTTTCCTCTCGACACCC 60.037 60.000 0.00 0.00 0.00 4.61
616 622 4.753662 TCCTCTCGACACCCCCGG 62.754 72.222 0.00 0.00 0.00 5.73
636 642 2.286418 GGCTTTGTTAATCCATCGAGCG 60.286 50.000 0.00 0.00 0.00 5.03
637 643 2.607635 GCTTTGTTAATCCATCGAGCGA 59.392 45.455 0.00 0.00 0.00 4.93
638 644 3.302740 GCTTTGTTAATCCATCGAGCGAG 60.303 47.826 0.00 0.00 0.00 5.03
639 645 1.852942 TGTTAATCCATCGAGCGAGC 58.147 50.000 0.00 0.00 0.00 5.03
657 663 3.545228 CGAGCGAGCTGTAGAAGTAGAAG 60.545 52.174 0.84 0.00 0.00 2.85
658 664 2.098443 AGCGAGCTGTAGAAGTAGAAGC 59.902 50.000 0.00 0.00 0.00 3.86
683 689 6.596888 CGGACAGCTCCATAATTGAATATGAT 59.403 38.462 0.00 0.00 36.12 2.45
684 690 7.201591 CGGACAGCTCCATAATTGAATATGATC 60.202 40.741 0.00 0.00 36.12 2.92
685 691 7.201591 GGACAGCTCCATAATTGAATATGATCG 60.202 40.741 0.00 0.00 35.69 3.69
688 694 5.355071 GCTCCATAATTGAATATGATCGCCA 59.645 40.000 0.00 0.00 35.69 5.69
689 695 6.457934 GCTCCATAATTGAATATGATCGCCAG 60.458 42.308 0.00 0.00 35.69 4.85
690 696 5.355071 TCCATAATTGAATATGATCGCCAGC 59.645 40.000 0.00 0.00 35.69 4.85
691 697 5.356190 CCATAATTGAATATGATCGCCAGCT 59.644 40.000 0.00 0.00 35.69 4.24
693 699 3.473923 TTGAATATGATCGCCAGCTGA 57.526 42.857 17.39 0.00 0.00 4.26
699 705 1.368950 GATCGCCAGCTGATGCCTA 59.631 57.895 17.39 1.12 40.80 3.93
700 706 0.669932 GATCGCCAGCTGATGCCTAG 60.670 60.000 17.39 0.00 40.80 3.02
706 712 4.471761 GCTGATGCCTAGCTTCCC 57.528 61.111 0.00 0.00 38.14 3.97
763 769 2.125225 GGACCCCTTCCACCCTCT 59.875 66.667 0.00 0.00 45.10 3.69
764 770 1.996187 GGACCCCTTCCACCCTCTC 60.996 68.421 0.00 0.00 45.10 3.20
765 771 1.996187 GACCCCTTCCACCCTCTCC 60.996 68.421 0.00 0.00 0.00 3.71
766 772 2.692741 CCCCTTCCACCCTCTCCC 60.693 72.222 0.00 0.00 0.00 4.30
767 773 2.692741 CCCTTCCACCCTCTCCCC 60.693 72.222 0.00 0.00 0.00 4.81
768 774 3.083997 CCTTCCACCCTCTCCCCG 61.084 72.222 0.00 0.00 0.00 5.73
769 775 3.787001 CTTCCACCCTCTCCCCGC 61.787 72.222 0.00 0.00 0.00 6.13
815 821 3.001838 CGTGCACTAGCTCTAGTCTGTAG 59.998 52.174 16.19 0.00 43.98 2.74
816 822 4.193090 GTGCACTAGCTCTAGTCTGTAGA 58.807 47.826 10.32 0.00 43.98 2.59
817 823 4.819630 GTGCACTAGCTCTAGTCTGTAGAT 59.180 45.833 10.32 0.00 43.98 1.98
818 824 5.992829 GTGCACTAGCTCTAGTCTGTAGATA 59.007 44.000 10.32 0.00 43.98 1.98
866 872 4.609247 CGGTCGTCGATCGGAGCC 62.609 72.222 20.00 11.42 42.43 4.70
867 873 4.267503 GGTCGTCGATCGGAGCCC 62.268 72.222 16.41 5.14 40.32 5.19
958 989 2.720758 CGAAGAAGACAGCGGTGCG 61.721 63.158 15.82 4.23 0.00 5.34
997 1028 1.153289 CAAGGCGAGGAGGGTGATG 60.153 63.158 0.00 0.00 0.00 3.07
1027 1058 3.429141 CCTGCTTGTCCTGCTGCG 61.429 66.667 0.00 0.00 0.00 5.18
1200 1234 4.710167 AAGCCCAACCCGTACGCC 62.710 66.667 10.49 0.00 0.00 5.68
1771 1817 0.545309 AGGTCTGCCTTCCTGCTGTA 60.545 55.000 0.00 0.00 44.18 2.74
1772 1818 0.324943 GGTCTGCCTTCCTGCTGTAA 59.675 55.000 0.00 0.00 0.00 2.41
1773 1819 1.065126 GGTCTGCCTTCCTGCTGTAAT 60.065 52.381 0.00 0.00 0.00 1.89
1777 1823 4.884164 GTCTGCCTTCCTGCTGTAATTATT 59.116 41.667 0.00 0.00 0.00 1.40
1778 1824 6.055588 GTCTGCCTTCCTGCTGTAATTATTA 58.944 40.000 0.00 0.00 0.00 0.98
1782 1828 8.305046 TGCCTTCCTGCTGTAATTATTATTTT 57.695 30.769 0.00 0.00 0.00 1.82
1808 1854 2.283145 AAGAGGTCTGCTTGCACAAT 57.717 45.000 0.00 0.00 0.00 2.71
1836 1882 5.538433 TCCTCCTTCCATTTTTCAATTCGTT 59.462 36.000 0.00 0.00 0.00 3.85
1837 1883 5.634859 CCTCCTTCCATTTTTCAATTCGTTG 59.365 40.000 0.00 0.00 0.00 4.10
1840 1886 7.367285 TCCTTCCATTTTTCAATTCGTTGTAG 58.633 34.615 0.00 0.00 0.00 2.74
1844 1890 7.586747 TCCATTTTTCAATTCGTTGTAGTACC 58.413 34.615 0.00 0.00 0.00 3.34
1862 1908 7.553402 TGTAGTACCAAGCTGTTTACAGAAAAA 59.447 33.333 13.83 0.00 46.59 1.94
1985 2205 3.586470 TTCATGTTGTGGTTAGTGGGT 57.414 42.857 0.00 0.00 0.00 4.51
1991 2211 5.563876 TGTTGTGGTTAGTGGGTGTATAA 57.436 39.130 0.00 0.00 0.00 0.98
2095 2315 3.056678 TGCACTGCATTATGAAACCAAGG 60.057 43.478 0.00 0.00 31.71 3.61
2096 2316 3.676873 GCACTGCATTATGAAACCAAGGG 60.677 47.826 0.00 0.00 0.00 3.95
2109 2329 3.697619 ACCAAGGGAGTAGTAGTTTGC 57.302 47.619 0.00 0.00 0.00 3.68
2117 2337 1.549170 AGTAGTAGTTTGCCGGAGTGG 59.451 52.381 5.05 0.00 42.50 4.00
2176 2409 7.979444 TTTAAAGACATTAGACTCCAAGGTG 57.021 36.000 0.00 0.00 0.00 4.00
2178 2411 6.380079 AAAGACATTAGACTCCAAGGTGAT 57.620 37.500 0.00 0.00 0.00 3.06
2179 2412 5.606348 AGACATTAGACTCCAAGGTGATC 57.394 43.478 0.00 0.00 0.00 2.92
2180 2413 4.098654 AGACATTAGACTCCAAGGTGATCG 59.901 45.833 0.00 0.00 0.00 3.69
2181 2414 4.023980 ACATTAGACTCCAAGGTGATCGA 58.976 43.478 0.00 0.00 0.00 3.59
2183 2416 0.820871 AGACTCCAAGGTGATCGAGC 59.179 55.000 0.00 0.00 0.00 5.03
2184 2417 0.820871 GACTCCAAGGTGATCGAGCT 59.179 55.000 0.90 0.00 0.00 4.09
2186 2419 0.809241 CTCCAAGGTGATCGAGCTGC 60.809 60.000 0.90 0.00 30.84 5.25
2188 2421 1.220206 CAAGGTGATCGAGCTGCCT 59.780 57.895 10.71 10.71 30.84 4.75
2189 2422 0.461548 CAAGGTGATCGAGCTGCCTA 59.538 55.000 15.51 0.00 30.84 3.93
2194 2427 2.945668 GGTGATCGAGCTGCCTAATTTT 59.054 45.455 0.90 0.00 0.00 1.82
2197 2430 5.106908 GGTGATCGAGCTGCCTAATTTTATC 60.107 44.000 0.90 0.00 0.00 1.75
2198 2431 5.698545 GTGATCGAGCTGCCTAATTTTATCT 59.301 40.000 0.90 0.00 0.00 1.98
2200 2433 7.385205 GTGATCGAGCTGCCTAATTTTATCTTA 59.615 37.037 0.90 0.00 0.00 2.10
2201 2434 7.600375 TGATCGAGCTGCCTAATTTTATCTTAG 59.400 37.037 0.90 0.00 0.00 2.18
2203 2436 6.701841 TCGAGCTGCCTAATTTTATCTTAGTG 59.298 38.462 0.00 0.00 0.00 2.74
2204 2437 6.701841 CGAGCTGCCTAATTTTATCTTAGTGA 59.298 38.462 0.00 0.00 0.00 3.41
2206 2439 8.214721 AGCTGCCTAATTTTATCTTAGTGAAC 57.785 34.615 0.00 0.00 0.00 3.18
2208 2441 7.201617 GCTGCCTAATTTTATCTTAGTGAACGT 60.202 37.037 0.00 0.00 0.00 3.99
2210 2443 9.005777 TGCCTAATTTTATCTTAGTGAACGTTT 57.994 29.630 0.46 0.00 0.00 3.60
2214 2447 5.520022 TTTATCTTAGTGAACGTTTCCGC 57.480 39.130 0.46 0.00 37.70 5.54
2217 2450 1.725164 CTTAGTGAACGTTTCCGCCTC 59.275 52.381 0.46 0.00 37.70 4.70
2246 2834 2.230508 CCACCTCTTGCGTAGTGAGTAA 59.769 50.000 0.00 0.00 31.79 2.24
2287 2875 1.787012 TCTTAGTGAACGTTTCCGCC 58.213 50.000 0.46 0.00 37.70 6.13
2293 2881 0.882927 TGAACGTTTCCGCCTCCTTG 60.883 55.000 0.46 0.00 37.70 3.61
2316 2910 1.282248 CGCTGTACGTGGTGGTTGAG 61.282 60.000 0.00 0.00 36.87 3.02
2325 2919 1.408702 GTGGTGGTTGAGTGCATTTGT 59.591 47.619 0.00 0.00 0.00 2.83
2329 2923 3.505680 GGTGGTTGAGTGCATTTGTATCA 59.494 43.478 0.00 0.00 0.00 2.15
2332 2926 5.574055 GTGGTTGAGTGCATTTGTATCAATG 59.426 40.000 0.00 0.00 32.93 2.82
2341 2935 4.345288 CATTTGTATCAATGGACTGCGTG 58.655 43.478 0.00 0.00 0.00 5.34
2362 2986 2.540973 GCCACGTCCAAAGTCAAAAGAC 60.541 50.000 0.00 0.00 0.00 3.01
2373 2997 6.889722 CCAAAGTCAAAAGACATAATAGGGGA 59.110 38.462 0.00 0.00 0.00 4.81
2392 3016 5.946377 AGGGGATGAACAGTTCTGAATAAAC 59.054 40.000 14.51 0.00 0.00 2.01
2435 3062 5.105997 ACCTCTTTCTGCTTCACATAATTGC 60.106 40.000 0.00 0.00 0.00 3.56
2436 3063 4.973396 TCTTTCTGCTTCACATAATTGCG 58.027 39.130 0.00 0.00 0.00 4.85
2437 3064 4.455533 TCTTTCTGCTTCACATAATTGCGT 59.544 37.500 0.00 0.00 0.00 5.24
2452 3081 0.176910 TGCGTCCACACTTCTTGACA 59.823 50.000 0.00 0.00 0.00 3.58
2456 3085 0.828022 TCCACACTTCTTGACACGGT 59.172 50.000 0.00 0.00 0.00 4.83
2458 3087 1.217882 CACACTTCTTGACACGGTCC 58.782 55.000 2.23 0.00 0.00 4.46
2459 3088 0.828022 ACACTTCTTGACACGGTCCA 59.172 50.000 2.23 0.00 0.00 4.02
2460 3089 1.202533 ACACTTCTTGACACGGTCCAG 60.203 52.381 2.23 1.32 0.00 3.86
2461 3090 0.249911 ACTTCTTGACACGGTCCAGC 60.250 55.000 2.23 0.00 0.00 4.85
2462 3091 0.034059 CTTCTTGACACGGTCCAGCT 59.966 55.000 2.23 0.00 0.00 4.24
2463 3092 0.033504 TTCTTGACACGGTCCAGCTC 59.966 55.000 0.00 0.00 0.00 4.09
2465 3101 0.946221 CTTGACACGGTCCAGCTCAC 60.946 60.000 0.00 0.00 0.00 3.51
2475 3111 1.550524 GTCCAGCTCACCTCACATACA 59.449 52.381 0.00 0.00 0.00 2.29
2480 3116 0.933097 CTCACCTCACATACATGCGC 59.067 55.000 0.00 0.00 0.00 6.09
2483 3119 0.744414 ACCTCACATACATGCGCACC 60.744 55.000 14.90 0.00 0.00 5.01
2489 3125 2.112198 ATACATGCGCACCCCAACG 61.112 57.895 14.90 0.00 0.00 4.10
2514 3150 2.647875 CCGTTGATTTTGCCGGCA 59.352 55.556 29.03 29.03 33.20 5.69
2528 3164 0.466189 CCGGCATGGCTAAAGGTGAT 60.466 55.000 18.09 0.00 0.00 3.06
2529 3165 0.947244 CGGCATGGCTAAAGGTGATC 59.053 55.000 18.09 0.00 0.00 2.92
2530 3166 0.947244 GGCATGGCTAAAGGTGATCG 59.053 55.000 12.86 0.00 0.00 3.69
2531 3167 1.475034 GGCATGGCTAAAGGTGATCGA 60.475 52.381 12.86 0.00 0.00 3.59
2532 3168 1.869767 GCATGGCTAAAGGTGATCGAG 59.130 52.381 0.00 0.00 0.00 4.04
2536 3172 0.933796 GCTAAAGGTGATCGAGCTGC 59.066 55.000 0.90 0.00 30.84 5.25
2537 3173 1.576356 CTAAAGGTGATCGAGCTGCC 58.424 55.000 0.90 4.41 30.84 4.85
2538 3174 1.137872 CTAAAGGTGATCGAGCTGCCT 59.862 52.381 10.71 10.71 30.84 4.75
2539 3175 1.195115 AAAGGTGATCGAGCTGCCTA 58.805 50.000 15.51 0.00 30.84 3.93
2549 3185 7.196331 GTGATCGAGCTGCCTAATTTTTAAAT 58.804 34.615 0.90 0.00 0.00 1.40
2555 3191 7.201435 CGAGCTGCCTAATTTTTAAATTTGGAC 60.201 37.037 23.46 17.07 46.98 4.02
2557 3193 6.652900 GCTGCCTAATTTTTAAATTTGGACCA 59.347 34.615 23.46 15.16 46.98 4.02
2561 3197 7.875554 GCCTAATTTTTAAATTTGGACCAGTCA 59.124 33.333 23.46 0.00 46.98 3.41
2582 3218 4.080129 TCAATTCATGGGAGAAGGAAGGAG 60.080 45.833 0.00 0.00 0.00 3.69
2585 3221 2.200081 CATGGGAGAAGGAAGGAGGAA 58.800 52.381 0.00 0.00 0.00 3.36
2586 3222 2.433444 TGGGAGAAGGAAGGAGGAAA 57.567 50.000 0.00 0.00 0.00 3.13
2587 3223 2.934722 TGGGAGAAGGAAGGAGGAAAT 58.065 47.619 0.00 0.00 0.00 2.17
2588 3224 2.578021 TGGGAGAAGGAAGGAGGAAATG 59.422 50.000 0.00 0.00 0.00 2.32
2589 3225 2.578480 GGGAGAAGGAAGGAGGAAATGT 59.422 50.000 0.00 0.00 0.00 2.71
2590 3226 3.010696 GGGAGAAGGAAGGAGGAAATGTT 59.989 47.826 0.00 0.00 0.00 2.71
2591 3227 4.509302 GGGAGAAGGAAGGAGGAAATGTTT 60.509 45.833 0.00 0.00 0.00 2.83
2592 3228 4.460731 GGAGAAGGAAGGAGGAAATGTTTG 59.539 45.833 0.00 0.00 0.00 2.93
2593 3229 5.066913 AGAAGGAAGGAGGAAATGTTTGT 57.933 39.130 0.00 0.00 0.00 2.83
2594 3230 5.458595 AGAAGGAAGGAGGAAATGTTTGTT 58.541 37.500 0.00 0.00 0.00 2.83
2595 3231 5.536538 AGAAGGAAGGAGGAAATGTTTGTTC 59.463 40.000 0.00 0.00 0.00 3.18
2596 3232 4.803452 AGGAAGGAGGAAATGTTTGTTCA 58.197 39.130 0.00 0.00 0.00 3.18
2597 3233 5.208121 AGGAAGGAGGAAATGTTTGTTCAA 58.792 37.500 0.00 0.00 0.00 2.69
2598 3234 5.660864 AGGAAGGAGGAAATGTTTGTTCAAA 59.339 36.000 0.00 0.00 0.00 2.69
2599 3235 6.156083 AGGAAGGAGGAAATGTTTGTTCAAAA 59.844 34.615 0.00 0.00 0.00 2.44
2600 3236 6.821160 GGAAGGAGGAAATGTTTGTTCAAAAA 59.179 34.615 0.00 0.00 0.00 1.94
2718 3375 5.584551 AGGAACTAGAAGGTTGATGGTTT 57.415 39.130 0.00 0.00 36.02 3.27
2719 3376 6.697641 AGGAACTAGAAGGTTGATGGTTTA 57.302 37.500 0.00 0.00 36.02 2.01
2722 3379 4.844884 ACTAGAAGGTTGATGGTTTAGGC 58.155 43.478 0.00 0.00 0.00 3.93
2724 3381 3.956744 AGAAGGTTGATGGTTTAGGCTC 58.043 45.455 0.00 0.00 0.00 4.70
2725 3382 3.330701 AGAAGGTTGATGGTTTAGGCTCA 59.669 43.478 0.00 0.00 0.00 4.26
2727 3384 2.092323 GGTTGATGGTTTAGGCTCACC 58.908 52.381 8.55 8.55 0.00 4.02
2745 3420 0.109781 CCGAAAAATCTGGTGGTGCG 60.110 55.000 0.00 0.00 0.00 5.34
2748 3423 1.000274 GAAAAATCTGGTGGTGCGCTT 60.000 47.619 9.73 0.00 0.00 4.68
2749 3424 1.904287 AAAATCTGGTGGTGCGCTTA 58.096 45.000 9.73 0.00 0.00 3.09
2765 3440 3.318017 CGCTTATTTAGAGGGATCACCG 58.682 50.000 0.00 0.00 46.96 4.94
2771 3446 2.252012 TAGAGGGATCACCGGGGCTT 62.252 60.000 6.32 0.00 46.96 4.35
2794 3469 1.043816 CCAGCACATAGGAGATCGGT 58.956 55.000 0.00 0.00 0.00 4.69
2799 3474 1.069204 CACATAGGAGATCGGTGGTGG 59.931 57.143 0.00 0.00 0.00 4.61
2801 3476 0.264955 ATAGGAGATCGGTGGTGGGT 59.735 55.000 0.00 0.00 0.00 4.51
2803 3478 1.987855 GGAGATCGGTGGTGGGTGA 60.988 63.158 0.00 0.00 0.00 4.02
2805 3480 0.391263 GAGATCGGTGGTGGGTGAAC 60.391 60.000 0.00 0.00 0.00 3.18
2821 3496 2.091277 GTGAACGTCGCTGAAGATGAAG 59.909 50.000 0.00 0.00 0.00 3.02
2827 3502 1.065926 TCGCTGAAGATGAAGCACCAT 60.066 47.619 0.00 0.00 39.47 3.55
2857 3532 5.808030 GGTTGAGATAGAAGAAGAGAAACCG 59.192 44.000 0.00 0.00 0.00 4.44
2868 3543 2.047830 AGAGAAACCGACTGACCCTTT 58.952 47.619 0.00 0.00 0.00 3.11
2870 3545 1.766496 AGAAACCGACTGACCCTTTGA 59.234 47.619 0.00 0.00 0.00 2.69
2932 3644 7.046652 TGCAAAATCTGGAATTTCTGTTTTCA 58.953 30.769 0.00 0.00 0.00 2.69
3003 3999 2.876091 TGCTGCTAGTACGATGTTGAC 58.124 47.619 0.00 0.00 0.00 3.18
3006 4002 3.439293 CTGCTAGTACGATGTTGACTGG 58.561 50.000 0.00 0.00 0.00 4.00
3025 4021 2.158534 TGGGTAAAATCTGCTGTGGTGT 60.159 45.455 0.00 0.00 0.00 4.16
3227 4223 2.372690 CGTGCTTGACTTCGACCGG 61.373 63.158 0.00 0.00 0.00 5.28
3233 4229 3.069318 GACTTCGACCGGGAGCCT 61.069 66.667 6.32 0.00 0.00 4.58
3379 4415 1.658114 CATCATCAATGGCGGCTGG 59.342 57.895 11.43 0.00 0.00 4.85
3427 4467 4.415150 CACCCGTGGCTGCAGGAT 62.415 66.667 17.12 0.00 0.00 3.24
3490 4530 1.375268 GCGGCTGAAGCAGTTCTCT 60.375 57.895 4.43 0.00 44.36 3.10
3526 4566 2.125106 AAGAAGGCGATGCGGGTC 60.125 61.111 0.00 0.00 0.00 4.46
3580 4620 2.419297 GGTGATCAAGGAGATGTTCGCT 60.419 50.000 0.00 0.00 37.00 4.93
3592 4632 0.678950 TGTTCGCTCTCATGGACACA 59.321 50.000 0.00 0.00 0.00 3.72
3754 4794 1.524621 CGCCATCACCATCCACCTC 60.525 63.158 0.00 0.00 0.00 3.85
3808 4848 0.889306 CCTTCCTCTTCTTCGACCGT 59.111 55.000 0.00 0.00 0.00 4.83
3971 5018 2.803956 GTTATGGCCATGCATGCATTTC 59.196 45.455 30.32 22.41 33.90 2.17
4002 5049 1.153449 GAATCCATGGTCGTCGCCA 60.153 57.895 12.58 10.19 43.48 5.69
4182 5239 6.704310 TGATCATCCATCACACATACATAGG 58.296 40.000 0.00 0.00 36.51 2.57
4199 5274 1.575244 AGGATGATCGTTGTGATGCG 58.425 50.000 0.00 0.00 37.47 4.73
4207 5282 1.119635 CGTTGTGATGCGTGGTTTTG 58.880 50.000 0.00 0.00 0.00 2.44
4222 5297 5.511377 CGTGGTTTTGTATGCATACATCAAC 59.489 40.000 33.93 32.55 42.32 3.18
4236 5311 9.045223 TGCATACATCAACTGAATTGTAGTATC 57.955 33.333 0.00 0.00 37.30 2.24
4326 5401 2.126914 TGCGGAAATGTTTTTGGTCG 57.873 45.000 0.00 0.00 0.00 4.79
4331 5406 0.598942 AAATGTTTTTGGTCGGGCGC 60.599 50.000 0.00 0.00 0.00 6.53
4333 5408 0.606944 ATGTTTTTGGTCGGGCGCTA 60.607 50.000 7.64 0.00 0.00 4.26
4504 5581 7.619964 AATAACAAAAATCCTACACCTACGG 57.380 36.000 0.00 0.00 0.00 4.02
4522 5606 0.731855 GGACTGTGCGAACCGTCTAC 60.732 60.000 16.59 0.00 0.00 2.59
4561 5645 2.710096 TAAATCGCTCCCTTTCCCTG 57.290 50.000 0.00 0.00 0.00 4.45
4565 5649 0.909610 TCGCTCCCTTTCCCTGTGAT 60.910 55.000 0.00 0.00 0.00 3.06
4568 5652 2.158755 CGCTCCCTTTCCCTGTGATTAT 60.159 50.000 0.00 0.00 0.00 1.28
4569 5653 3.071023 CGCTCCCTTTCCCTGTGATTATA 59.929 47.826 0.00 0.00 0.00 0.98
4570 5654 4.390264 GCTCCCTTTCCCTGTGATTATAC 58.610 47.826 0.00 0.00 0.00 1.47
4571 5655 4.747009 GCTCCCTTTCCCTGTGATTATACC 60.747 50.000 0.00 0.00 0.00 2.73
4585 5966 0.544357 TATACCTGGCCATCCCTCGG 60.544 60.000 5.51 5.16 0.00 4.63
4610 5991 2.577059 CTAGCCAAGCCCGACGAA 59.423 61.111 0.00 0.00 0.00 3.85
4611 5992 1.519455 CTAGCCAAGCCCGACGAAG 60.519 63.158 0.00 0.00 0.00 3.79
4615 5996 1.512156 GCCAAGCCCGACGAAGAAAA 61.512 55.000 0.00 0.00 0.00 2.29
4616 5997 0.237498 CCAAGCCCGACGAAGAAAAC 59.763 55.000 0.00 0.00 0.00 2.43
4625 6012 2.332654 CGAAGAAAACCCAGGCCCG 61.333 63.158 0.00 0.00 0.00 6.13
4686 6073 2.126346 GCCCGCATGTGTGAAAGC 60.126 61.111 5.38 0.00 0.00 3.51
4687 6074 2.568090 CCCGCATGTGTGAAAGCC 59.432 61.111 5.38 0.00 0.00 4.35
4690 6077 2.324330 CGCATGTGTGAAAGCCCGA 61.324 57.895 0.00 0.00 0.00 5.14
4729 6116 6.406961 GGGCCCCTTTAGTAAATCATGAAAAG 60.407 42.308 12.23 3.90 0.00 2.27
4734 6121 7.415206 CCCTTTAGTAAATCATGAAAAGGACGG 60.415 40.741 25.79 12.39 43.61 4.79
4737 6124 1.474330 AATCATGAAAAGGACGGGCC 58.526 50.000 0.00 0.00 0.00 5.80
4804 6227 2.505982 CCCATGGCCAGGACTACG 59.494 66.667 21.32 0.51 0.00 3.51
4805 6228 2.505982 CCATGGCCAGGACTACGG 59.494 66.667 21.32 2.34 0.00 4.02
4831 6254 2.036256 ATTCAGCTGTGGGGCCAC 59.964 61.111 14.67 0.00 46.33 5.01
4846 6269 1.479389 GGCCACCCCATTTCCTATCAG 60.479 57.143 0.00 0.00 0.00 2.90
4854 6277 3.255149 CCCATTTCCTATCAGAGCATTGC 59.745 47.826 0.00 0.00 0.00 3.56
4864 6287 0.034380 AGAGCATTGCCACATCAGCT 60.034 50.000 4.70 0.00 34.61 4.24
5069 6526 4.574674 ATTCTCACACCCTAGCATCAAA 57.425 40.909 0.00 0.00 0.00 2.69
5087 6544 6.128499 GCATCAAAGAAGCAAATGCATTAACA 60.128 34.615 13.39 0.00 45.16 2.41
5115 6572 4.305769 CTGGAGAGTTCTCAGAACACAAG 58.694 47.826 19.89 9.34 44.60 3.16
5127 6584 7.279615 TCTCAGAACACAAGAAACCAGAATTA 58.720 34.615 0.00 0.00 0.00 1.40
5142 6599 4.578105 CCAGAATTATTCTTCAGGTCAGCC 59.422 45.833 4.51 0.00 38.11 4.85
5145 6602 3.695830 TTATTCTTCAGGTCAGCCGTT 57.304 42.857 0.00 0.00 40.50 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.883673 ACGATTAAATTTGGATCTCGGGAAA 59.116 36.000 0.00 0.00 0.00 3.13
2 3 5.031066 ACGATTAAATTTGGATCTCGGGA 57.969 39.130 0.00 0.00 0.00 5.14
17 18 9.896263 GGTCTTGTTGGTTAAATTTACGATTAA 57.104 29.630 0.00 0.00 0.00 1.40
18 19 8.229137 CGGTCTTGTTGGTTAAATTTACGATTA 58.771 33.333 0.00 0.00 0.00 1.75
19 20 7.041235 TCGGTCTTGTTGGTTAAATTTACGATT 60.041 33.333 0.00 0.00 0.00 3.34
20 21 6.427547 TCGGTCTTGTTGGTTAAATTTACGAT 59.572 34.615 0.00 0.00 0.00 3.73
21 22 5.757320 TCGGTCTTGTTGGTTAAATTTACGA 59.243 36.000 0.00 0.00 0.00 3.43
22 23 5.988092 TCGGTCTTGTTGGTTAAATTTACG 58.012 37.500 0.00 0.00 0.00 3.18
23 24 7.148869 GCAATCGGTCTTGTTGGTTAAATTTAC 60.149 37.037 0.00 0.00 0.00 2.01
24 25 6.864165 GCAATCGGTCTTGTTGGTTAAATTTA 59.136 34.615 0.00 0.00 0.00 1.40
25 26 5.694458 GCAATCGGTCTTGTTGGTTAAATTT 59.306 36.000 0.00 0.00 0.00 1.82
26 27 5.010617 AGCAATCGGTCTTGTTGGTTAAATT 59.989 36.000 0.00 0.00 30.16 1.82
27 28 4.522789 AGCAATCGGTCTTGTTGGTTAAAT 59.477 37.500 0.00 0.00 30.16 1.40
28 29 3.886505 AGCAATCGGTCTTGTTGGTTAAA 59.113 39.130 0.00 0.00 30.16 1.52
29 30 3.482436 AGCAATCGGTCTTGTTGGTTAA 58.518 40.909 0.00 0.00 30.16 2.01
30 31 3.071479 GAGCAATCGGTCTTGTTGGTTA 58.929 45.455 0.00 0.00 36.68 2.85
31 32 1.880027 GAGCAATCGGTCTTGTTGGTT 59.120 47.619 0.00 0.00 36.68 3.67
32 33 1.523758 GAGCAATCGGTCTTGTTGGT 58.476 50.000 0.00 0.00 36.68 3.67
33 34 0.443869 CGAGCAATCGGTCTTGTTGG 59.556 55.000 0.00 0.00 37.51 3.77
34 35 3.955429 CGAGCAATCGGTCTTGTTG 57.045 52.632 0.00 0.00 37.51 3.33
43 44 2.697431 TTTTTGTTCCCGAGCAATCG 57.303 45.000 0.00 0.00 31.74 3.34
44 45 8.134895 TGATATAATTTTTGTTCCCGAGCAATC 58.865 33.333 0.00 0.00 31.74 2.67
45 46 7.920682 GTGATATAATTTTTGTTCCCGAGCAAT 59.079 33.333 0.00 0.00 31.74 3.56
46 47 7.122055 AGTGATATAATTTTTGTTCCCGAGCAA 59.878 33.333 0.00 0.00 0.00 3.91
47 48 6.601613 AGTGATATAATTTTTGTTCCCGAGCA 59.398 34.615 0.00 0.00 0.00 4.26
48 49 6.912591 CAGTGATATAATTTTTGTTCCCGAGC 59.087 38.462 0.00 0.00 0.00 5.03
49 50 8.208718 TCAGTGATATAATTTTTGTTCCCGAG 57.791 34.615 0.00 0.00 0.00 4.63
50 51 8.568676 TTCAGTGATATAATTTTTGTTCCCGA 57.431 30.769 0.00 0.00 0.00 5.14
51 52 9.801873 AATTCAGTGATATAATTTTTGTTCCCG 57.198 29.630 0.00 0.00 0.00 5.14
77 78 9.173021 ACCACTGAATTCGTATTTTCAATATGA 57.827 29.630 0.04 0.00 31.85 2.15
88 89 9.730420 GCAAAAATTATACCACTGAATTCGTAT 57.270 29.630 0.04 5.16 0.00 3.06
89 90 8.185505 GGCAAAAATTATACCACTGAATTCGTA 58.814 33.333 0.04 0.00 0.00 3.43
90 91 7.033185 GGCAAAAATTATACCACTGAATTCGT 58.967 34.615 0.04 0.00 0.00 3.85
91 92 6.475402 GGGCAAAAATTATACCACTGAATTCG 59.525 38.462 0.04 0.00 0.00 3.34
92 93 6.761242 GGGGCAAAAATTATACCACTGAATTC 59.239 38.462 0.00 0.00 0.00 2.17
93 94 6.629291 CGGGGCAAAAATTATACCACTGAATT 60.629 38.462 0.00 0.00 0.00 2.17
94 95 5.163457 CGGGGCAAAAATTATACCACTGAAT 60.163 40.000 0.00 0.00 0.00 2.57
95 96 4.158764 CGGGGCAAAAATTATACCACTGAA 59.841 41.667 0.00 0.00 0.00 3.02
96 97 3.697045 CGGGGCAAAAATTATACCACTGA 59.303 43.478 0.00 0.00 0.00 3.41
97 98 3.445805 ACGGGGCAAAAATTATACCACTG 59.554 43.478 0.00 0.00 0.00 3.66
98 99 3.697542 GACGGGGCAAAAATTATACCACT 59.302 43.478 0.00 0.00 0.00 4.00
99 100 3.487879 CGACGGGGCAAAAATTATACCAC 60.488 47.826 0.00 0.00 0.00 4.16
100 101 2.683867 CGACGGGGCAAAAATTATACCA 59.316 45.455 0.00 0.00 0.00 3.25
101 102 2.542205 GCGACGGGGCAAAAATTATACC 60.542 50.000 0.00 0.00 0.00 2.73
102 103 2.097791 TGCGACGGGGCAAAAATTATAC 59.902 45.455 0.00 0.00 40.59 1.47
103 104 2.366533 TGCGACGGGGCAAAAATTATA 58.633 42.857 0.00 0.00 40.59 0.98
104 105 1.178276 TGCGACGGGGCAAAAATTAT 58.822 45.000 0.00 0.00 40.59 1.28
105 106 2.642425 TGCGACGGGGCAAAAATTA 58.358 47.368 0.00 0.00 40.59 1.40
106 107 3.449349 TGCGACGGGGCAAAAATT 58.551 50.000 0.00 0.00 40.59 1.82
117 118 2.158959 GTGGAGACCGATTGCGACG 61.159 63.158 0.00 0.00 40.82 5.12
118 119 1.078759 CTGTGGAGACCGATTGCGAC 61.079 60.000 0.00 0.00 40.82 5.19
119 120 1.215382 CTGTGGAGACCGATTGCGA 59.785 57.895 0.00 0.00 40.82 5.10
120 121 2.456119 GCTGTGGAGACCGATTGCG 61.456 63.158 0.00 0.00 37.24 4.85
121 122 0.175760 TAGCTGTGGAGACCGATTGC 59.824 55.000 0.00 0.00 0.00 3.56
122 123 2.672961 TTAGCTGTGGAGACCGATTG 57.327 50.000 0.00 0.00 0.00 2.67
123 124 3.914426 ATTTAGCTGTGGAGACCGATT 57.086 42.857 0.00 0.00 0.00 3.34
124 125 3.914426 AATTTAGCTGTGGAGACCGAT 57.086 42.857 0.00 0.00 0.00 4.18
125 126 3.695830 AAATTTAGCTGTGGAGACCGA 57.304 42.857 0.00 0.00 0.00 4.69
126 127 3.306166 CGTAAATTTAGCTGTGGAGACCG 59.694 47.826 0.00 0.00 0.00 4.79
127 128 3.621715 CCGTAAATTTAGCTGTGGAGACC 59.378 47.826 0.00 0.00 0.00 3.85
128 129 4.251268 ACCGTAAATTTAGCTGTGGAGAC 58.749 43.478 0.00 0.00 0.00 3.36
129 130 4.546829 ACCGTAAATTTAGCTGTGGAGA 57.453 40.909 0.00 0.00 0.00 3.71
130 131 6.730960 TTAACCGTAAATTTAGCTGTGGAG 57.269 37.500 0.00 0.00 0.00 3.86
131 132 6.711645 ACTTTAACCGTAAATTTAGCTGTGGA 59.288 34.615 0.00 0.00 0.00 4.02
132 133 6.905578 ACTTTAACCGTAAATTTAGCTGTGG 58.094 36.000 0.00 0.00 0.00 4.17
133 134 8.071368 TCAACTTTAACCGTAAATTTAGCTGTG 58.929 33.333 0.00 0.00 0.00 3.66
134 135 8.156994 TCAACTTTAACCGTAAATTTAGCTGT 57.843 30.769 0.00 0.00 0.00 4.40
135 136 9.620660 ATTCAACTTTAACCGTAAATTTAGCTG 57.379 29.630 0.00 0.00 0.00 4.24
136 137 9.836076 GATTCAACTTTAACCGTAAATTTAGCT 57.164 29.630 0.00 0.00 0.00 3.32
137 138 9.836076 AGATTCAACTTTAACCGTAAATTTAGC 57.164 29.630 0.00 0.00 0.00 3.09
140 141 8.562052 ACGAGATTCAACTTTAACCGTAAATTT 58.438 29.630 0.00 0.00 0.00 1.82
141 142 8.013378 CACGAGATTCAACTTTAACCGTAAATT 58.987 33.333 0.00 0.00 0.00 1.82
142 143 7.385752 TCACGAGATTCAACTTTAACCGTAAAT 59.614 33.333 0.00 0.00 0.00 1.40
143 144 6.700960 TCACGAGATTCAACTTTAACCGTAAA 59.299 34.615 0.00 0.00 0.00 2.01
144 145 6.215121 TCACGAGATTCAACTTTAACCGTAA 58.785 36.000 0.00 0.00 0.00 3.18
145 146 5.771469 TCACGAGATTCAACTTTAACCGTA 58.229 37.500 0.00 0.00 0.00 4.02
146 147 4.624015 TCACGAGATTCAACTTTAACCGT 58.376 39.130 0.00 0.00 0.00 4.83
147 148 5.585500 TTCACGAGATTCAACTTTAACCG 57.415 39.130 0.00 0.00 0.00 4.44
148 149 5.049680 TGCTTCACGAGATTCAACTTTAACC 60.050 40.000 0.00 0.00 0.00 2.85
149 150 5.846473 GTGCTTCACGAGATTCAACTTTAAC 59.154 40.000 0.00 0.00 0.00 2.01
150 151 5.985781 GTGCTTCACGAGATTCAACTTTAA 58.014 37.500 0.00 0.00 0.00 1.52
151 152 5.591643 GTGCTTCACGAGATTCAACTTTA 57.408 39.130 0.00 0.00 0.00 1.85
152 153 4.474226 GTGCTTCACGAGATTCAACTTT 57.526 40.909 0.00 0.00 0.00 2.66
171 172 0.502695 CATAATGTAGCGCGTCCGTG 59.497 55.000 8.43 0.00 36.67 4.94
172 173 1.213094 GCATAATGTAGCGCGTCCGT 61.213 55.000 8.43 0.00 36.67 4.69
173 174 1.212455 TGCATAATGTAGCGCGTCCG 61.212 55.000 8.43 0.00 37.57 4.79
174 175 0.508641 CTGCATAATGTAGCGCGTCC 59.491 55.000 8.43 0.00 0.00 4.79
175 176 1.071239 CACTGCATAATGTAGCGCGTC 60.071 52.381 8.43 0.00 33.13 5.19
176 177 0.930310 CACTGCATAATGTAGCGCGT 59.070 50.000 8.43 0.00 33.13 6.01
177 178 0.233074 CCACTGCATAATGTAGCGCG 59.767 55.000 0.00 0.00 33.13 6.86
178 179 1.528586 CTCCACTGCATAATGTAGCGC 59.471 52.381 0.00 0.00 33.13 5.92
179 180 3.055591 CTCTCCACTGCATAATGTAGCG 58.944 50.000 0.00 0.00 33.13 4.26
180 181 4.202202 ACTCTCTCCACTGCATAATGTAGC 60.202 45.833 0.00 0.00 33.13 3.58
181 182 5.528043 ACTCTCTCCACTGCATAATGTAG 57.472 43.478 0.00 0.00 36.12 2.74
182 183 6.129874 AGTACTCTCTCCACTGCATAATGTA 58.870 40.000 0.00 0.00 0.00 2.29
183 184 4.959210 AGTACTCTCTCCACTGCATAATGT 59.041 41.667 0.00 0.00 0.00 2.71
184 185 5.528043 AGTACTCTCTCCACTGCATAATG 57.472 43.478 0.00 0.00 0.00 1.90
185 186 8.167392 AGTATAGTACTCTCTCCACTGCATAAT 58.833 37.037 0.00 0.00 32.47 1.28
186 187 7.519057 AGTATAGTACTCTCTCCACTGCATAA 58.481 38.462 0.00 0.00 32.47 1.90
187 188 7.080653 AGTATAGTACTCTCTCCACTGCATA 57.919 40.000 0.00 0.00 32.47 3.14
188 189 5.947663 AGTATAGTACTCTCTCCACTGCAT 58.052 41.667 0.00 0.00 32.47 3.96
189 190 5.375283 AGTATAGTACTCTCTCCACTGCA 57.625 43.478 0.00 0.00 32.47 4.41
190 191 6.500041 CAAAGTATAGTACTCTCTCCACTGC 58.500 44.000 0.00 0.00 38.26 4.40
191 192 6.095580 TGCAAAGTATAGTACTCTCTCCACTG 59.904 42.308 0.00 0.00 38.26 3.66
192 193 6.188407 TGCAAAGTATAGTACTCTCTCCACT 58.812 40.000 0.00 0.00 38.26 4.00
193 194 6.452494 TGCAAAGTATAGTACTCTCTCCAC 57.548 41.667 0.00 0.00 38.26 4.02
194 195 7.101652 CTTGCAAAGTATAGTACTCTCTCCA 57.898 40.000 0.00 0.00 39.70 3.86
211 212 1.031571 CGCCCTCCATAGCTTGCAAA 61.032 55.000 0.00 0.00 0.00 3.68
212 213 1.451927 CGCCCTCCATAGCTTGCAA 60.452 57.895 0.00 0.00 0.00 4.08
213 214 1.699054 ATCGCCCTCCATAGCTTGCA 61.699 55.000 0.00 0.00 0.00 4.08
214 215 0.952984 GATCGCCCTCCATAGCTTGC 60.953 60.000 0.00 0.00 0.00 4.01
215 216 0.668706 CGATCGCCCTCCATAGCTTG 60.669 60.000 0.26 0.00 0.00 4.01
216 217 1.115930 ACGATCGCCCTCCATAGCTT 61.116 55.000 16.60 0.00 0.00 3.74
217 218 1.115930 AACGATCGCCCTCCATAGCT 61.116 55.000 16.60 0.00 0.00 3.32
218 219 0.946221 CAACGATCGCCCTCCATAGC 60.946 60.000 16.60 0.00 0.00 2.97
219 220 0.673985 TCAACGATCGCCCTCCATAG 59.326 55.000 16.60 0.00 0.00 2.23
220 221 0.387929 GTCAACGATCGCCCTCCATA 59.612 55.000 16.60 0.00 0.00 2.74
221 222 1.144057 GTCAACGATCGCCCTCCAT 59.856 57.895 16.60 0.00 0.00 3.41
222 223 2.279810 TGTCAACGATCGCCCTCCA 61.280 57.895 16.60 2.92 0.00 3.86
223 224 1.810030 GTGTCAACGATCGCCCTCC 60.810 63.158 16.60 0.00 0.00 4.30
224 225 1.810030 GGTGTCAACGATCGCCCTC 60.810 63.158 16.60 4.55 0.00 4.30
225 226 2.227089 GAGGTGTCAACGATCGCCCT 62.227 60.000 16.60 10.59 35.11 5.19
226 227 1.810030 GAGGTGTCAACGATCGCCC 60.810 63.158 16.60 5.76 35.11 6.13
227 228 1.810030 GGAGGTGTCAACGATCGCC 60.810 63.158 16.60 7.08 34.80 5.54
228 229 2.158959 CGGAGGTGTCAACGATCGC 61.159 63.158 16.60 0.00 0.00 4.58
229 230 0.797249 GTCGGAGGTGTCAACGATCG 60.797 60.000 14.88 14.88 37.69 3.69
230 231 0.526662 AGTCGGAGGTGTCAACGATC 59.473 55.000 0.00 0.00 37.69 3.69
231 232 0.966920 AAGTCGGAGGTGTCAACGAT 59.033 50.000 0.00 0.00 37.69 3.73
232 233 0.748450 AAAGTCGGAGGTGTCAACGA 59.252 50.000 0.00 0.00 0.00 3.85
233 234 0.859232 CAAAGTCGGAGGTGTCAACG 59.141 55.000 0.00 0.00 0.00 4.10
234 235 1.949465 ACAAAGTCGGAGGTGTCAAC 58.051 50.000 0.00 0.00 0.00 3.18
235 236 2.702592 AACAAAGTCGGAGGTGTCAA 57.297 45.000 0.00 0.00 0.00 3.18
236 237 3.823281 TTAACAAAGTCGGAGGTGTCA 57.177 42.857 0.00 0.00 0.00 3.58
237 238 3.683340 GGATTAACAAAGTCGGAGGTGTC 59.317 47.826 0.00 0.00 0.00 3.67
238 239 3.071892 TGGATTAACAAAGTCGGAGGTGT 59.928 43.478 0.00 0.00 0.00 4.16
239 240 3.670625 TGGATTAACAAAGTCGGAGGTG 58.329 45.455 0.00 0.00 0.00 4.00
240 241 4.019681 TGATGGATTAACAAAGTCGGAGGT 60.020 41.667 0.00 0.00 0.00 3.85
241 242 4.513442 TGATGGATTAACAAAGTCGGAGG 58.487 43.478 0.00 0.00 0.00 4.30
242 243 6.540189 AGAATGATGGATTAACAAAGTCGGAG 59.460 38.462 0.00 0.00 0.00 4.63
243 244 6.414732 AGAATGATGGATTAACAAAGTCGGA 58.585 36.000 0.00 0.00 0.00 4.55
244 245 6.683974 AGAATGATGGATTAACAAAGTCGG 57.316 37.500 0.00 0.00 0.00 4.79
245 246 7.495934 AGGTAGAATGATGGATTAACAAAGTCG 59.504 37.037 0.00 0.00 0.00 4.18
246 247 8.616076 CAGGTAGAATGATGGATTAACAAAGTC 58.384 37.037 0.00 0.00 0.00 3.01
247 248 7.067494 GCAGGTAGAATGATGGATTAACAAAGT 59.933 37.037 0.00 0.00 0.00 2.66
248 249 7.420800 GCAGGTAGAATGATGGATTAACAAAG 58.579 38.462 0.00 0.00 0.00 2.77
249 250 6.038161 CGCAGGTAGAATGATGGATTAACAAA 59.962 38.462 0.00 0.00 0.00 2.83
250 251 5.527214 CGCAGGTAGAATGATGGATTAACAA 59.473 40.000 0.00 0.00 0.00 2.83
251 252 5.056480 CGCAGGTAGAATGATGGATTAACA 58.944 41.667 0.00 0.00 0.00 2.41
252 253 4.083802 GCGCAGGTAGAATGATGGATTAAC 60.084 45.833 0.30 0.00 0.00 2.01
253 254 4.065088 GCGCAGGTAGAATGATGGATTAA 58.935 43.478 0.30 0.00 0.00 1.40
254 255 3.557054 GGCGCAGGTAGAATGATGGATTA 60.557 47.826 10.83 0.00 0.00 1.75
255 256 2.498167 GCGCAGGTAGAATGATGGATT 58.502 47.619 0.30 0.00 0.00 3.01
256 257 1.271054 GGCGCAGGTAGAATGATGGAT 60.271 52.381 10.83 0.00 0.00 3.41
257 258 0.106708 GGCGCAGGTAGAATGATGGA 59.893 55.000 10.83 0.00 0.00 3.41
258 259 0.179048 TGGCGCAGGTAGAATGATGG 60.179 55.000 10.83 0.00 0.00 3.51
259 260 1.888215 ATGGCGCAGGTAGAATGATG 58.112 50.000 10.83 0.00 0.00 3.07
260 261 2.645838 AATGGCGCAGGTAGAATGAT 57.354 45.000 10.83 0.00 0.00 2.45
261 262 3.769739 ATAATGGCGCAGGTAGAATGA 57.230 42.857 10.83 0.00 0.00 2.57
262 263 4.320494 GGAAATAATGGCGCAGGTAGAATG 60.320 45.833 10.83 0.00 0.00 2.67
263 264 3.821033 GGAAATAATGGCGCAGGTAGAAT 59.179 43.478 10.83 0.00 0.00 2.40
264 265 3.211045 GGAAATAATGGCGCAGGTAGAA 58.789 45.455 10.83 0.00 0.00 2.10
265 266 2.486548 GGGAAATAATGGCGCAGGTAGA 60.487 50.000 10.83 0.00 0.00 2.59
426 432 2.202919 CGTCGCTGGATCCATGCA 60.203 61.111 25.86 15.46 0.00 3.96
428 434 2.202919 TGCGTCGCTGGATCCATG 60.203 61.111 16.63 11.39 0.00 3.66
442 448 3.626680 ATGAGTCGGTCGGTGTGCG 62.627 63.158 0.00 0.00 0.00 5.34
469 475 3.889134 CTGCAGCTTGCTGGGTCGA 62.889 63.158 21.98 0.00 45.31 4.20
492 498 0.179070 GGACAGCTTTCCGAGGATCC 60.179 60.000 2.48 2.48 0.00 3.36
493 499 3.371087 GGACAGCTTTCCGAGGATC 57.629 57.895 2.46 0.00 0.00 3.36
501 507 0.673956 GAAGGGACCGGACAGCTTTC 60.674 60.000 9.46 0.00 0.00 2.62
502 508 1.128188 AGAAGGGACCGGACAGCTTT 61.128 55.000 9.46 0.00 0.00 3.51
503 509 1.128188 AAGAAGGGACCGGACAGCTT 61.128 55.000 9.46 1.01 0.00 3.74
504 510 1.536662 AAGAAGGGACCGGACAGCT 60.537 57.895 9.46 0.00 0.00 4.24
505 511 1.079057 GAAGAAGGGACCGGACAGC 60.079 63.158 9.46 0.00 0.00 4.40
507 513 0.974383 GAAGAAGAAGGGACCGGACA 59.026 55.000 9.46 0.00 0.00 4.02
509 515 1.900486 GAAGAAGAAGAAGGGACCGGA 59.100 52.381 9.46 0.00 0.00 5.14
510 516 1.903183 AGAAGAAGAAGAAGGGACCGG 59.097 52.381 0.00 0.00 0.00 5.28
512 518 4.901197 AGAAGAAGAAGAAGAAGGGACC 57.099 45.455 0.00 0.00 0.00 4.46
513 519 6.109156 AGAAGAAGAAGAAGAAGAAGGGAC 57.891 41.667 0.00 0.00 0.00 4.46
514 520 6.556874 AGAAGAAGAAGAAGAAGAAGAAGGGA 59.443 38.462 0.00 0.00 0.00 4.20
515 521 6.768483 AGAAGAAGAAGAAGAAGAAGAAGGG 58.232 40.000 0.00 0.00 0.00 3.95
516 522 7.387673 GGAAGAAGAAGAAGAAGAAGAAGAAGG 59.612 40.741 0.00 0.00 0.00 3.46
517 523 7.387673 GGGAAGAAGAAGAAGAAGAAGAAGAAG 59.612 40.741 0.00 0.00 0.00 2.85
519 525 6.556874 AGGGAAGAAGAAGAAGAAGAAGAAGA 59.443 38.462 0.00 0.00 0.00 2.87
520 526 6.768483 AGGGAAGAAGAAGAAGAAGAAGAAG 58.232 40.000 0.00 0.00 0.00 2.85
521 527 6.755542 AGGGAAGAAGAAGAAGAAGAAGAA 57.244 37.500 0.00 0.00 0.00 2.52
522 528 8.973182 GTATAGGGAAGAAGAAGAAGAAGAAGA 58.027 37.037 0.00 0.00 0.00 2.87
523 529 7.918562 CGTATAGGGAAGAAGAAGAAGAAGAAG 59.081 40.741 0.00 0.00 0.00 2.85
524 530 7.630944 GCGTATAGGGAAGAAGAAGAAGAAGAA 60.631 40.741 0.00 0.00 0.00 2.52
525 531 6.183360 GCGTATAGGGAAGAAGAAGAAGAAGA 60.183 42.308 0.00 0.00 0.00 2.87
545 551 2.781595 GATCGATTGGGCCGGCGTAT 62.782 60.000 22.54 13.46 0.00 3.06
547 553 4.910585 GATCGATTGGGCCGGCGT 62.911 66.667 22.54 6.11 0.00 5.68
550 556 2.356313 CTCGATCGATTGGGCCGG 60.356 66.667 19.78 0.00 0.00 6.13
551 557 1.372251 CTCTCGATCGATTGGGCCG 60.372 63.158 19.78 5.04 0.00 6.13
552 558 1.005630 CCTCTCGATCGATTGGGCC 60.006 63.158 19.78 0.00 0.00 5.80
553 559 0.319125 GTCCTCTCGATCGATTGGGC 60.319 60.000 25.99 23.23 0.00 5.36
554 560 0.039978 CGTCCTCTCGATCGATTGGG 60.040 60.000 25.99 22.47 0.00 4.12
560 566 2.627004 CCGACGTCCTCTCGATCG 59.373 66.667 9.36 9.36 35.74 3.69
564 570 4.477975 GGTGCCGACGTCCTCTCG 62.478 72.222 10.58 0.00 0.00 4.04
581 587 1.000171 GGAAAGTGGGAGCTTTGCTTG 60.000 52.381 0.00 0.00 41.53 4.01
591 597 0.966920 GTGTCGAGAGGAAAGTGGGA 59.033 55.000 0.00 0.00 0.00 4.37
595 601 1.192803 GGGGGTGTCGAGAGGAAAGT 61.193 60.000 0.00 0.00 0.00 2.66
612 618 1.333619 CGATGGATTAACAAAGCCGGG 59.666 52.381 2.18 0.00 0.00 5.73
616 622 2.607635 TCGCTCGATGGATTAACAAAGC 59.392 45.455 0.00 0.00 0.00 3.51
636 642 3.790789 GCTTCTACTTCTACAGCTCGCTC 60.791 52.174 0.00 0.00 0.00 5.03
637 643 2.098443 GCTTCTACTTCTACAGCTCGCT 59.902 50.000 0.00 0.00 0.00 4.93
638 644 2.456010 GCTTCTACTTCTACAGCTCGC 58.544 52.381 0.00 0.00 0.00 5.03
639 645 2.539953 CCGCTTCTACTTCTACAGCTCG 60.540 54.545 0.00 0.00 0.00 5.03
669 675 6.175471 TCAGCTGGCGATCATATTCAATTAT 58.825 36.000 15.13 0.00 0.00 1.28
689 695 1.228094 GGGGAAGCTAGGCATCAGC 60.228 63.158 0.00 0.00 39.41 4.26
690 696 1.453669 GGGGGAAGCTAGGCATCAG 59.546 63.158 0.00 0.00 0.00 2.90
691 697 2.443394 CGGGGGAAGCTAGGCATCA 61.443 63.158 0.00 0.00 0.00 3.07
693 699 2.366972 ACGGGGGAAGCTAGGCAT 60.367 61.111 0.00 0.00 0.00 4.40
699 705 3.710722 CAGAGCACGGGGGAAGCT 61.711 66.667 0.00 0.00 42.17 3.74
700 706 4.021925 ACAGAGCACGGGGGAAGC 62.022 66.667 0.00 0.00 0.00 3.86
703 709 3.625897 CACACAGAGCACGGGGGA 61.626 66.667 0.00 0.00 0.00 4.81
704 710 4.704833 CCACACAGAGCACGGGGG 62.705 72.222 0.00 0.00 0.00 5.40
705 711 3.596066 CTCCACACAGAGCACGGGG 62.596 68.421 0.00 0.00 0.00 5.73
706 712 2.047844 CTCCACACAGAGCACGGG 60.048 66.667 0.00 0.00 0.00 5.28
762 768 4.214327 GAGAGAAGGCGCGGGGAG 62.214 72.222 8.83 0.00 0.00 4.30
765 771 4.560856 CTCGAGAGAAGGCGCGGG 62.561 72.222 6.58 0.00 41.32 6.13
766 772 2.543687 TTTCTCGAGAGAAGGCGCGG 62.544 60.000 15.94 0.00 46.80 6.46
767 773 0.526524 ATTTCTCGAGAGAAGGCGCG 60.527 55.000 15.94 0.00 46.80 6.86
768 774 0.926846 CATTTCTCGAGAGAAGGCGC 59.073 55.000 15.94 0.00 46.80 6.53
769 775 0.926846 GCATTTCTCGAGAGAAGGCG 59.073 55.000 21.81 11.95 46.80 5.52
770 776 1.294857 GGCATTTCTCGAGAGAAGGC 58.705 55.000 25.20 25.20 46.80 4.35
771 777 1.565305 CGGCATTTCTCGAGAGAAGG 58.435 55.000 15.94 14.63 46.80 3.46
772 778 0.926846 GCGGCATTTCTCGAGAGAAG 59.073 55.000 15.94 9.56 46.80 2.85
773 779 0.802222 CGCGGCATTTCTCGAGAGAA 60.802 55.000 15.94 12.94 44.94 2.87
774 780 1.226688 CGCGGCATTTCTCGAGAGA 60.227 57.895 15.94 12.12 39.12 3.10
817 823 8.978472 GCCTCTATTCTCTCTAGTCTCTATCTA 58.022 40.741 0.00 0.00 0.00 1.98
818 824 7.092846 GGCCTCTATTCTCTCTAGTCTCTATCT 60.093 44.444 0.00 0.00 0.00 1.98
862 868 2.219325 CTGTGTGTCTCTCGGGGCTC 62.219 65.000 0.00 0.00 0.00 4.70
863 869 2.203640 TGTGTGTCTCTCGGGGCT 60.204 61.111 0.00 0.00 0.00 5.19
864 870 2.262915 CTGTGTGTCTCTCGGGGC 59.737 66.667 0.00 0.00 0.00 5.80
866 872 0.453793 CTAGCTGTGTGTCTCTCGGG 59.546 60.000 0.00 0.00 0.00 5.14
867 873 0.179150 GCTAGCTGTGTGTCTCTCGG 60.179 60.000 7.70 0.00 0.00 4.63
968 999 1.202428 CCTCGCCTTGTAGAAGCTACC 60.202 57.143 0.00 0.00 0.00 3.18
970 1001 2.025155 CTCCTCGCCTTGTAGAAGCTA 58.975 52.381 0.00 0.00 0.00 3.32
1272 1306 0.665369 GGTGGTACTTGTCCGTCACG 60.665 60.000 0.00 0.00 0.00 4.35
1782 1828 4.216257 GTGCAAGCAGACCTCTTTATCAAA 59.784 41.667 0.00 0.00 0.00 2.69
1784 1830 3.244526 TGTGCAAGCAGACCTCTTTATCA 60.245 43.478 0.00 0.00 0.00 2.15
1785 1831 3.338249 TGTGCAAGCAGACCTCTTTATC 58.662 45.455 0.00 0.00 0.00 1.75
1786 1832 3.423539 TGTGCAAGCAGACCTCTTTAT 57.576 42.857 0.00 0.00 0.00 1.40
1787 1833 2.928801 TGTGCAAGCAGACCTCTTTA 57.071 45.000 0.00 0.00 0.00 1.85
1788 1834 2.057137 TTGTGCAAGCAGACCTCTTT 57.943 45.000 0.00 0.00 0.00 2.52
1789 1835 2.283145 ATTGTGCAAGCAGACCTCTT 57.717 45.000 0.00 0.00 0.00 2.85
1790 1836 2.157738 GAATTGTGCAAGCAGACCTCT 58.842 47.619 0.00 0.00 0.00 3.69
1791 1837 2.157738 AGAATTGTGCAAGCAGACCTC 58.842 47.619 0.00 0.00 0.00 3.85
1792 1838 2.283145 AGAATTGTGCAAGCAGACCT 57.717 45.000 0.00 0.00 0.00 3.85
1793 1839 2.352127 GGAAGAATTGTGCAAGCAGACC 60.352 50.000 0.00 0.00 0.00 3.85
1794 1840 2.555757 AGGAAGAATTGTGCAAGCAGAC 59.444 45.455 0.00 0.00 0.00 3.51
1795 1841 2.816087 GAGGAAGAATTGTGCAAGCAGA 59.184 45.455 0.00 0.00 0.00 4.26
1796 1842 2.094854 GGAGGAAGAATTGTGCAAGCAG 60.095 50.000 0.00 0.00 0.00 4.24
1808 1854 7.523709 CGAATTGAAAAATGGAAGGAGGAAGAA 60.524 37.037 0.00 0.00 0.00 2.52
1836 1882 5.794726 TCTGTAAACAGCTTGGTACTACA 57.205 39.130 5.21 0.00 43.46 2.74
1837 1883 7.486802 TTTTCTGTAAACAGCTTGGTACTAC 57.513 36.000 5.21 0.00 43.46 2.73
1862 1908 8.564574 TCTGTTTTATTTTACTTGCACGAGATT 58.435 29.630 0.00 0.00 0.00 2.40
1863 1909 8.094798 TCTGTTTTATTTTACTTGCACGAGAT 57.905 30.769 0.00 0.00 0.00 2.75
1866 1912 6.483974 TCCTCTGTTTTATTTTACTTGCACGA 59.516 34.615 0.00 0.00 0.00 4.35
1929 2144 5.903810 ACTATGTAAGCCTACAACAGCTAC 58.096 41.667 0.00 0.00 41.36 3.58
1937 2152 7.626390 ACCAAAATGTACTATGTAAGCCTACA 58.374 34.615 0.00 0.00 42.22 2.74
1991 2211 9.723601 ATCAGTTTGTAAAAATGGCATAAACAT 57.276 25.926 18.38 6.31 0.00 2.71
2087 2307 4.395625 GCAAACTACTACTCCCTTGGTTT 58.604 43.478 0.00 0.00 0.00 3.27
2091 2311 2.618053 CGGCAAACTACTACTCCCTTG 58.382 52.381 0.00 0.00 0.00 3.61
2092 2312 1.553704 CCGGCAAACTACTACTCCCTT 59.446 52.381 0.00 0.00 0.00 3.95
2093 2313 1.192428 CCGGCAAACTACTACTCCCT 58.808 55.000 0.00 0.00 0.00 4.20
2095 2315 1.823610 ACTCCGGCAAACTACTACTCC 59.176 52.381 0.00 0.00 0.00 3.85
2096 2316 2.416972 CCACTCCGGCAAACTACTACTC 60.417 54.545 0.00 0.00 0.00 2.59
2109 2329 0.036010 AACTCTTGATGCCACTCCGG 60.036 55.000 0.00 0.00 38.11 5.14
2117 2337 5.912528 CAAAGATTGCAAAACTCTTGATGC 58.087 37.500 13.17 0.00 39.22 3.91
2155 2388 5.825593 TCACCTTGGAGTCTAATGTCTTT 57.174 39.130 0.00 0.00 0.00 2.52
2168 2401 1.219124 GCAGCTCGATCACCTTGGA 59.781 57.895 0.00 0.00 0.00 3.53
2169 2402 1.817099 GGCAGCTCGATCACCTTGG 60.817 63.158 0.00 0.00 0.00 3.61
2170 2403 0.461548 TAGGCAGCTCGATCACCTTG 59.538 55.000 6.23 0.00 31.79 3.61
2173 2406 2.246719 AATTAGGCAGCTCGATCACC 57.753 50.000 0.00 0.00 0.00 4.02
2174 2407 5.698545 AGATAAAATTAGGCAGCTCGATCAC 59.301 40.000 0.00 0.00 0.00 3.06
2176 2409 6.793492 AAGATAAAATTAGGCAGCTCGATC 57.207 37.500 0.00 0.00 0.00 3.69
2178 2411 6.701841 CACTAAGATAAAATTAGGCAGCTCGA 59.298 38.462 0.00 0.00 35.06 4.04
2179 2412 6.701841 TCACTAAGATAAAATTAGGCAGCTCG 59.298 38.462 0.00 0.00 35.06 5.03
2180 2413 8.338986 GTTCACTAAGATAAAATTAGGCAGCTC 58.661 37.037 0.00 0.00 35.06 4.09
2181 2414 7.011482 CGTTCACTAAGATAAAATTAGGCAGCT 59.989 37.037 0.00 0.00 35.06 4.24
2183 2416 8.197988 ACGTTCACTAAGATAAAATTAGGCAG 57.802 34.615 0.00 0.00 35.06 4.85
2184 2417 8.556213 AACGTTCACTAAGATAAAATTAGGCA 57.444 30.769 0.00 0.00 35.06 4.75
2186 2419 9.983804 GGAAACGTTCACTAAGATAAAATTAGG 57.016 33.333 0.00 0.00 35.06 2.69
2214 2447 4.785453 GAGGTGGGCCGCAAGAGG 62.785 72.222 20.39 0.00 40.50 3.69
2217 2450 3.058160 CAAGAGGTGGGCCGCAAG 61.058 66.667 20.39 0.00 40.50 4.01
2222 2810 2.125106 CTACGCAAGAGGTGGGCC 60.125 66.667 0.00 0.00 43.91 5.80
2225 2813 0.603569 ACTCACTACGCAAGAGGTGG 59.396 55.000 0.00 0.00 41.07 4.61
2227 2815 3.573110 AGTTTACTCACTACGCAAGAGGT 59.427 43.478 0.00 0.00 43.62 3.85
2299 2887 1.497991 CACTCAACCACCACGTACAG 58.502 55.000 0.00 0.00 0.00 2.74
2300 2888 0.531090 GCACTCAACCACCACGTACA 60.531 55.000 0.00 0.00 0.00 2.90
2316 2910 4.107622 GCAGTCCATTGATACAAATGCAC 58.892 43.478 0.00 0.00 36.42 4.57
2325 2919 0.251634 TGGCACGCAGTCCATTGATA 59.748 50.000 0.00 0.00 41.61 2.15
2329 2923 3.049674 CGTGGCACGCAGTCCATT 61.050 61.111 28.30 0.00 41.61 3.16
2341 2935 1.673920 TCTTTTGACTTTGGACGTGGC 59.326 47.619 0.00 0.00 0.00 5.01
2362 2986 6.830912 TCAGAACTGTTCATCCCCTATTATG 58.169 40.000 21.50 7.35 0.00 1.90
2413 3040 5.026462 CGCAATTATGTGAAGCAGAAAGAG 58.974 41.667 0.00 0.00 39.48 2.85
2435 3062 0.852777 CGTGTCAAGAAGTGTGGACG 59.147 55.000 0.00 0.00 33.04 4.79
2436 3063 1.217882 CCGTGTCAAGAAGTGTGGAC 58.782 55.000 0.00 0.00 0.00 4.02
2437 3064 0.828022 ACCGTGTCAAGAAGTGTGGA 59.172 50.000 0.00 0.00 0.00 4.02
2452 3081 2.203640 TGAGGTGAGCTGGACCGT 60.204 61.111 0.00 0.00 38.64 4.83
2456 3085 1.937191 TGTATGTGAGGTGAGCTGGA 58.063 50.000 0.00 0.00 0.00 3.86
2458 3087 1.938577 GCATGTATGTGAGGTGAGCTG 59.061 52.381 0.00 0.00 0.00 4.24
2459 3088 1.472201 CGCATGTATGTGAGGTGAGCT 60.472 52.381 0.00 0.00 40.61 4.09
2460 3089 0.933097 CGCATGTATGTGAGGTGAGC 59.067 55.000 0.00 0.00 40.61 4.26
2461 3090 0.933097 GCGCATGTATGTGAGGTGAG 59.067 55.000 0.30 0.00 40.61 3.51
2462 3091 0.248843 TGCGCATGTATGTGAGGTGA 59.751 50.000 5.66 0.00 40.61 4.02
2463 3092 0.374758 GTGCGCATGTATGTGAGGTG 59.625 55.000 15.91 0.00 40.61 4.00
2465 3101 1.439353 GGGTGCGCATGTATGTGAGG 61.439 60.000 15.91 0.00 40.61 3.86
2475 3111 2.596046 TTTCGTTGGGGTGCGCAT 60.596 55.556 15.91 0.00 0.00 4.73
2480 3116 2.989253 GGGCCTTTCGTTGGGGTG 60.989 66.667 0.84 0.00 0.00 4.61
2483 3119 4.653888 ACGGGGCCTTTCGTTGGG 62.654 66.667 0.84 0.00 36.04 4.12
2489 3125 1.939381 GCAAAATCAACGGGGCCTTTC 60.939 52.381 0.84 0.00 0.00 2.62
2514 3150 1.765314 AGCTCGATCACCTTTAGCCAT 59.235 47.619 0.00 0.00 33.63 4.40
2523 3159 2.246719 AATTAGGCAGCTCGATCACC 57.753 50.000 0.00 0.00 0.00 4.02
2528 3164 6.811170 CCAAATTTAAAAATTAGGCAGCTCGA 59.189 34.615 1.30 0.00 37.62 4.04
2529 3165 6.811170 TCCAAATTTAAAAATTAGGCAGCTCG 59.189 34.615 1.30 0.00 37.62 5.03
2530 3166 7.064609 GGTCCAAATTTAAAAATTAGGCAGCTC 59.935 37.037 1.30 0.00 37.62 4.09
2531 3167 6.878923 GGTCCAAATTTAAAAATTAGGCAGCT 59.121 34.615 1.30 0.00 37.62 4.24
2532 3168 6.652900 TGGTCCAAATTTAAAAATTAGGCAGC 59.347 34.615 1.30 0.00 37.62 5.25
2536 3172 9.771534 TTGACTGGTCCAAATTTAAAAATTAGG 57.228 29.630 1.30 0.00 37.62 2.69
2549 3185 3.164268 CCCATGAATTGACTGGTCCAAA 58.836 45.455 0.00 0.00 0.00 3.28
2555 3191 3.054139 TCCTTCTCCCATGAATTGACTGG 60.054 47.826 0.00 0.00 0.00 4.00
2557 3193 4.324874 CCTTCCTTCTCCCATGAATTGACT 60.325 45.833 0.00 0.00 0.00 3.41
2561 3197 3.203934 CCTCCTTCCTTCTCCCATGAATT 59.796 47.826 0.00 0.00 0.00 2.17
2600 3236 5.958321 AGACTCATTTCCTCCTTCCTTTTT 58.042 37.500 0.00 0.00 0.00 1.94
2601 3237 5.590976 AGACTCATTTCCTCCTTCCTTTT 57.409 39.130 0.00 0.00 0.00 2.27
2602 3238 6.704056 TTAGACTCATTTCCTCCTTCCTTT 57.296 37.500 0.00 0.00 0.00 3.11
2603 3239 5.338789 GCTTAGACTCATTTCCTCCTTCCTT 60.339 44.000 0.00 0.00 0.00 3.36
2604 3240 4.163268 GCTTAGACTCATTTCCTCCTTCCT 59.837 45.833 0.00 0.00 0.00 3.36
2605 3241 4.080863 TGCTTAGACTCATTTCCTCCTTCC 60.081 45.833 0.00 0.00 0.00 3.46
2606 3242 4.873259 GTGCTTAGACTCATTTCCTCCTTC 59.127 45.833 0.00 0.00 0.00 3.46
2607 3243 4.323868 GGTGCTTAGACTCATTTCCTCCTT 60.324 45.833 0.00 0.00 0.00 3.36
2608 3244 3.198853 GGTGCTTAGACTCATTTCCTCCT 59.801 47.826 0.00 0.00 0.00 3.69
2609 3245 3.536570 GGTGCTTAGACTCATTTCCTCC 58.463 50.000 0.00 0.00 0.00 4.30
2610 3246 3.119101 TCGGTGCTTAGACTCATTTCCTC 60.119 47.826 0.00 0.00 0.00 3.71
2611 3247 2.832129 TCGGTGCTTAGACTCATTTCCT 59.168 45.455 0.00 0.00 0.00 3.36
2612 3248 3.190874 CTCGGTGCTTAGACTCATTTCC 58.809 50.000 0.00 0.00 0.00 3.13
2613 3249 3.190874 CCTCGGTGCTTAGACTCATTTC 58.809 50.000 0.00 0.00 0.00 2.17
2614 3250 2.678190 GCCTCGGTGCTTAGACTCATTT 60.678 50.000 0.00 0.00 0.00 2.32
2615 3251 1.134670 GCCTCGGTGCTTAGACTCATT 60.135 52.381 0.00 0.00 0.00 2.57
2658 3294 2.017559 ATACCCAGACCTCGCTTCGC 62.018 60.000 0.00 0.00 0.00 4.70
2659 3295 0.249073 CATACCCAGACCTCGCTTCG 60.249 60.000 0.00 0.00 0.00 3.79
2660 3296 0.530870 GCATACCCAGACCTCGCTTC 60.531 60.000 0.00 0.00 0.00 3.86
2661 3297 1.522569 GCATACCCAGACCTCGCTT 59.477 57.895 0.00 0.00 0.00 4.68
2662 3298 2.435693 GGCATACCCAGACCTCGCT 61.436 63.158 0.00 0.00 0.00 4.93
2663 3299 2.109181 GGCATACCCAGACCTCGC 59.891 66.667 0.00 0.00 0.00 5.03
2670 3306 2.516930 CCTTGCCGGCATACCCAG 60.517 66.667 33.25 23.81 0.00 4.45
2689 3325 2.657143 ACCTTCTAGTTCCTAGCCGAG 58.343 52.381 0.00 0.00 34.36 4.63
2713 3370 2.642154 TTTTCGGTGAGCCTAAACCA 57.358 45.000 0.00 0.00 36.14 3.67
2718 3375 2.304761 ACCAGATTTTTCGGTGAGCCTA 59.695 45.455 0.00 0.00 0.00 3.93
2719 3376 1.073923 ACCAGATTTTTCGGTGAGCCT 59.926 47.619 0.00 0.00 0.00 4.58
2725 3382 0.958822 GCACCACCAGATTTTTCGGT 59.041 50.000 0.00 0.00 0.00 4.69
2727 3384 0.729140 GCGCACCACCAGATTTTTCG 60.729 55.000 0.30 0.00 0.00 3.46
2745 3420 3.557264 CCCGGTGATCCCTCTAAATAAGC 60.557 52.174 0.00 0.00 0.00 3.09
2748 3423 2.616524 CCCCGGTGATCCCTCTAAATA 58.383 52.381 0.00 0.00 0.00 1.40
2749 3424 1.435256 CCCCGGTGATCCCTCTAAAT 58.565 55.000 0.00 0.00 0.00 1.40
2771 3446 1.613925 GATCTCCTATGTGCTGGCGTA 59.386 52.381 0.00 0.00 0.00 4.42
2784 3459 1.990060 CACCCACCACCGATCTCCT 60.990 63.158 0.00 0.00 0.00 3.69
2794 3469 3.542676 AGCGACGTTCACCCACCA 61.543 61.111 0.00 0.00 0.00 4.17
2799 3474 0.716108 CATCTTCAGCGACGTTCACC 59.284 55.000 0.00 0.00 0.00 4.02
2801 3476 2.328473 CTTCATCTTCAGCGACGTTCA 58.672 47.619 0.00 0.00 0.00 3.18
2803 3478 1.071605 GCTTCATCTTCAGCGACGTT 58.928 50.000 0.00 0.00 0.00 3.99
2805 3480 0.368227 GTGCTTCATCTTCAGCGACG 59.632 55.000 0.00 0.00 39.04 5.12
2821 3496 2.047655 TCAACCGTCGGATGGTGC 60.048 61.111 22.06 0.00 37.61 5.01
2827 3502 2.995283 TCTTCTATCTCAACCGTCGGA 58.005 47.619 20.51 0.00 0.00 4.55
2943 3655 4.973168 AGTGTCATTAGCTTTTCAGGTGA 58.027 39.130 0.00 0.00 31.45 4.02
2945 3657 7.168219 TGATTAGTGTCATTAGCTTTTCAGGT 58.832 34.615 0.00 0.00 34.24 4.00
2946 3658 7.335422 ACTGATTAGTGTCATTAGCTTTTCAGG 59.665 37.037 0.00 0.00 35.34 3.86
2947 3659 8.261492 ACTGATTAGTGTCATTAGCTTTTCAG 57.739 34.615 0.00 0.00 35.34 3.02
3003 3999 2.489329 CACCACAGCAGATTTTACCCAG 59.511 50.000 0.00 0.00 0.00 4.45
3006 4002 3.689649 CCTACACCACAGCAGATTTTACC 59.310 47.826 0.00 0.00 0.00 2.85
3215 4211 3.379445 GGCTCCCGGTCGAAGTCA 61.379 66.667 0.00 0.00 0.00 3.41
3379 4415 5.402398 TGCATGCATACGTAGATAGATCAC 58.598 41.667 18.46 0.00 0.00 3.06
3490 4530 2.542020 TCTTGAAGCGGTTCATGACA 57.458 45.000 30.62 17.36 42.41 3.58
3526 4566 2.887568 GACAGGTGCTCCGCGATG 60.888 66.667 8.23 0.00 39.05 3.84
3580 4620 3.466836 GTTGTTGTCTGTGTCCATGAGA 58.533 45.455 0.00 0.00 0.00 3.27
3592 4632 3.819877 GACCCGGCCGTTGTTGTCT 62.820 63.158 26.12 0.00 0.00 3.41
3667 4707 0.468648 CCATGAGCAGCTCCATCTCA 59.531 55.000 20.16 0.66 40.62 3.27
3754 4794 1.817099 GTCATTGGAGAGGCGCTGG 60.817 63.158 7.64 0.00 0.00 4.85
4002 5049 1.111116 CGGCCATCCTGCATTCCATT 61.111 55.000 2.24 0.00 0.00 3.16
4182 5239 1.004610 CCACGCATCACAACGATCATC 60.005 52.381 0.00 0.00 29.21 2.92
4199 5274 6.527722 CAGTTGATGTATGCATACAAAACCAC 59.472 38.462 35.99 29.55 45.40 4.16
4207 5282 8.830580 ACTACAATTCAGTTGATGTATGCATAC 58.169 33.333 26.72 26.72 40.37 2.39
4222 5297 8.936864 GGGAATAAATCGGATACTACAATTCAG 58.063 37.037 0.00 0.00 0.00 3.02
4236 5311 1.001633 ACGGGATCGGGAATAAATCGG 59.998 52.381 0.00 0.00 41.39 4.18
4326 5401 0.536006 AAAGGCATGATCTAGCGCCC 60.536 55.000 2.29 0.00 46.08 6.13
4331 5406 8.019669 GCACACATAATTAAAGGCATGATCTAG 58.980 37.037 0.00 0.00 0.00 2.43
4333 5408 6.548622 AGCACACATAATTAAAGGCATGATCT 59.451 34.615 0.00 0.00 0.00 2.75
4504 5581 1.063951 CGTAGACGGTTCGCACAGTC 61.064 60.000 10.17 10.17 45.61 3.51
4518 5602 1.681327 GGACACCTCTGCCCGTAGA 60.681 63.158 0.00 0.00 0.00 2.59
4530 5614 3.385577 GAGCGATTTATCAGAGGACACC 58.614 50.000 0.00 0.00 0.00 4.16
4543 5627 0.698818 ACAGGGAAAGGGAGCGATTT 59.301 50.000 0.00 0.00 0.00 2.17
4545 5629 0.909610 TCACAGGGAAAGGGAGCGAT 60.910 55.000 0.00 0.00 0.00 4.58
4547 5631 0.035056 AATCACAGGGAAAGGGAGCG 60.035 55.000 0.00 0.00 0.00 5.03
4548 5632 3.584733 ATAATCACAGGGAAAGGGAGC 57.415 47.619 0.00 0.00 0.00 4.70
4561 5645 2.644798 AGGGATGGCCAGGTATAATCAC 59.355 50.000 13.05 2.34 35.15 3.06
4565 5649 1.348064 CGAGGGATGGCCAGGTATAA 58.652 55.000 13.05 0.00 35.15 0.98
4568 5652 2.445845 CCGAGGGATGGCCAGGTA 60.446 66.667 13.05 0.00 35.15 3.08
4610 5991 4.678743 GCCGGGCCTGGGTTTTCT 62.679 66.667 32.27 0.00 0.00 2.52
4638 6025 1.486726 CCTGAATTTCTAGGCCCGACT 59.513 52.381 0.00 0.00 0.00 4.18
4674 6061 0.518636 CTGTCGGGCTTTCACACATG 59.481 55.000 0.00 0.00 0.00 3.21
4676 6063 1.227823 CCTGTCGGGCTTTCACACA 60.228 57.895 0.00 0.00 0.00 3.72
4677 6064 3.655481 CCTGTCGGGCTTTCACAC 58.345 61.111 0.00 0.00 0.00 3.82
4701 6088 2.307768 GATTTACTAAAGGGGCCCAGC 58.692 52.381 27.72 7.11 0.00 4.85
4702 6089 3.662759 TGATTTACTAAAGGGGCCCAG 57.337 47.619 27.72 16.54 0.00 4.45
4703 6090 3.529734 TCATGATTTACTAAAGGGGCCCA 59.470 43.478 27.72 2.34 0.00 5.36
4704 6091 4.178956 TCATGATTTACTAAAGGGGCCC 57.821 45.455 17.12 17.12 0.00 5.80
4705 6092 6.406961 CCTTTTCATGATTTACTAAAGGGGCC 60.407 42.308 19.99 0.00 38.49 5.80
4706 6093 6.379988 TCCTTTTCATGATTTACTAAAGGGGC 59.620 38.462 24.32 0.00 41.09 5.80
4707 6094 7.415206 CGTCCTTTTCATGATTTACTAAAGGGG 60.415 40.741 24.32 16.74 41.09 4.79
4708 6095 7.415206 CCGTCCTTTTCATGATTTACTAAAGGG 60.415 40.741 24.32 12.84 41.09 3.95
4709 6096 7.415206 CCCGTCCTTTTCATGATTTACTAAAGG 60.415 40.741 21.06 21.06 41.74 3.11
4713 6100 4.879545 GCCCGTCCTTTTCATGATTTACTA 59.120 41.667 0.00 0.00 0.00 1.82
4831 6254 3.803186 ATGCTCTGATAGGAAATGGGG 57.197 47.619 0.00 0.00 0.00 4.96
4834 6257 3.887110 TGGCAATGCTCTGATAGGAAATG 59.113 43.478 4.82 0.00 0.00 2.32
4841 6264 3.473625 CTGATGTGGCAATGCTCTGATA 58.526 45.455 4.82 0.00 0.00 2.15
4846 6269 0.815734 AAGCTGATGTGGCAATGCTC 59.184 50.000 4.82 0.00 0.00 4.26
4854 6277 6.016777 GGAATAAATCCTACAAGCTGATGTGG 60.017 42.308 1.14 0.00 45.56 4.17
5069 6526 3.836949 CCGTGTTAATGCATTTGCTTCT 58.163 40.909 18.75 0.00 42.66 2.85
5087 6544 2.992114 AGAACTCTCCAGCGCCGT 60.992 61.111 2.29 0.00 0.00 5.68
5127 6584 2.154462 CAAACGGCTGACCTGAAGAAT 58.846 47.619 0.00 0.00 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.