Multiple sequence alignment - TraesCS4D01G027100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G027100 chr4D 100.000 6723 0 0 1 6723 12016251 12022973 0.000000e+00 12416.0
1 TraesCS4D01G027100 chr4D 84.234 444 44 10 3403 3826 13348198 13347761 6.280000e-110 409.0
2 TraesCS4D01G027100 chr4D 83.196 363 29 17 2001 2334 13349988 13349629 3.050000e-78 303.0
3 TraesCS4D01G027100 chr4D 82.192 365 31 15 4510 4853 13347282 13346931 3.970000e-72 283.0
4 TraesCS4D01G027100 chr4D 89.362 188 20 0 1137 1324 12413756 12413569 3.130000e-58 237.0
5 TraesCS4D01G027100 chr4D 94.737 57 3 0 3840 3896 13347707 13347651 9.290000e-14 89.8
6 TraesCS4D01G027100 chr4D 88.710 62 7 0 5379 5440 13357911 13357850 7.230000e-10 76.8
7 TraesCS4D01G027100 chr4D 97.436 39 1 0 5340 5378 13358049 13358011 4.350000e-07 67.6
8 TraesCS4D01G027100 chr4D 93.478 46 1 2 2768 2811 226564750 226564795 4.350000e-07 67.6
9 TraesCS4D01G027100 chr4D 100.000 36 0 0 2777 2812 363923955 363923920 4.350000e-07 67.6
10 TraesCS4D01G027100 chr4D 82.540 63 8 3 2744 2805 452312009 452312069 1.200000e-02 52.8
11 TraesCS4D01G027100 chr4A 92.195 5176 145 56 759 5772 590503189 590498111 0.000000e+00 7081.0
12 TraesCS4D01G027100 chr4A 79.170 1229 185 31 1105 2296 588643508 588644702 0.000000e+00 785.0
13 TraesCS4D01G027100 chr4A 85.714 651 69 11 1 629 590504096 590503448 0.000000e+00 665.0
14 TraesCS4D01G027100 chr4A 82.683 641 71 26 1570 2200 590432951 590432341 3.570000e-147 532.0
15 TraesCS4D01G027100 chr4A 90.909 154 12 1 1149 1300 590433094 590432941 8.840000e-49 206.0
16 TraesCS4D01G027100 chr4A 84.314 204 23 4 1121 1324 590275255 590275449 2.470000e-44 191.0
17 TraesCS4D01G027100 chr4A 92.523 107 6 1 655 761 590503450 590503346 1.170000e-32 152.0
18 TraesCS4D01G027100 chr4A 82.781 151 23 2 1152 1300 654903973 654903824 1.520000e-26 132.0
19 TraesCS4D01G027100 chr4A 75.000 284 36 21 5483 5743 588657410 588657681 1.540000e-16 99.0
20 TraesCS4D01G027100 chr4A 92.063 63 5 0 3834 3896 588655900 588655962 9.290000e-14 89.8
21 TraesCS4D01G027100 chr4A 94.872 39 2 0 5340 5378 571363903 571363941 2.020000e-05 62.1
22 TraesCS4D01G027100 chr4A 97.222 36 1 0 5340 5375 588589145 588589180 2.020000e-05 62.1
23 TraesCS4D01G027100 chr4B 92.173 5149 162 66 759 5774 21481822 21476782 0.000000e+00 7053.0
24 TraesCS4D01G027100 chr4B 89.150 341 26 3 1992 2327 228741176 228741510 1.350000e-111 414.0
25 TraesCS4D01G027100 chr4B 81.308 428 43 17 349 756 21482415 21482005 5.060000e-81 313.0
26 TraesCS4D01G027100 chr4B 83.196 363 29 9 2001 2334 24065492 24065133 3.050000e-78 303.0
27 TraesCS4D01G027100 chr4B 91.566 166 10 4 2605 2769 24064642 24064480 6.780000e-55 226.0
28 TraesCS4D01G027100 chr4B 84.163 221 35 0 1104 1324 22285949 22286169 1.470000e-51 215.0
29 TraesCS4D01G027100 chr7A 80.426 1267 176 31 1105 2334 141895547 141896778 0.000000e+00 900.0
30 TraesCS4D01G027100 chr7A 80.431 1252 173 31 1120 2334 140761122 140762338 0.000000e+00 889.0
31 TraesCS4D01G027100 chr7A 80.189 1267 179 31 1105 2334 141304790 141306021 0.000000e+00 883.0
32 TraesCS4D01G027100 chr7A 80.256 1251 177 26 1120 2334 141644792 141646008 0.000000e+00 878.0
33 TraesCS4D01G027100 chr7A 80.192 1252 175 32 1120 2334 141050014 141051229 0.000000e+00 870.0
34 TraesCS4D01G027100 chr7A 91.053 190 15 2 3403 3592 140763766 140763953 8.650000e-64 255.0
35 TraesCS4D01G027100 chr7A 91.053 190 15 2 3403 3592 141052657 141052844 8.650000e-64 255.0
36 TraesCS4D01G027100 chr7A 91.053 190 15 2 3403 3592 141647435 141647622 8.650000e-64 255.0
37 TraesCS4D01G027100 chr7A 91.053 190 15 2 3403 3592 141898616 141898803 8.650000e-64 255.0
38 TraesCS4D01G027100 chr7A 90.526 190 16 2 3403 3592 141307444 141307631 4.030000e-62 250.0
39 TraesCS4D01G027100 chr7A 90.964 166 11 4 2605 2769 140762822 140762984 3.160000e-53 220.0
40 TraesCS4D01G027100 chr7A 90.964 166 11 4 2605 2769 141051713 141051875 3.160000e-53 220.0
41 TraesCS4D01G027100 chr7A 90.964 166 11 4 2605 2769 141306505 141306667 3.160000e-53 220.0
42 TraesCS4D01G027100 chr7A 90.964 166 11 4 2605 2769 141646492 141646654 3.160000e-53 220.0
43 TraesCS4D01G027100 chr7A 90.964 166 11 4 2605 2769 141897673 141897835 3.160000e-53 220.0
44 TraesCS4D01G027100 chr7A 75.265 283 37 20 5483 5743 141900940 141901211 3.320000e-18 104.0
45 TraesCS4D01G027100 chr7A 75.000 284 36 21 5483 5743 140766271 140766542 1.540000e-16 99.0
46 TraesCS4D01G027100 chr7A 75.000 284 36 21 5483 5743 141650260 141650531 1.540000e-16 99.0
47 TraesCS4D01G027100 chr7A 93.651 63 4 0 3834 3896 141308061 141308123 2.000000e-15 95.3
48 TraesCS4D01G027100 chr7A 82.759 116 8 7 5633 5743 141055876 141055984 7.180000e-15 93.5
49 TraesCS4D01G027100 chr7A 74.558 283 39 20 5483 5743 141309881 141310152 7.180000e-15 93.5
50 TraesCS4D01G027100 chr7A 92.063 63 5 0 3834 3896 140764383 140764445 9.290000e-14 89.8
51 TraesCS4D01G027100 chr7A 92.063 63 5 0 3834 3896 141053274 141053336 9.290000e-14 89.8
52 TraesCS4D01G027100 chr7A 92.063 63 5 0 3834 3896 141648219 141648281 9.290000e-14 89.8
53 TraesCS4D01G027100 chr6A 79.905 1269 176 34 1105 2334 201639882 201641110 0.000000e+00 857.0
54 TraesCS4D01G027100 chr6A 86.161 448 35 12 3403 3826 201642538 201642982 6.140000e-125 459.0
55 TraesCS4D01G027100 chr6A 80.992 363 34 17 4510 4851 201643462 201643810 8.650000e-64 255.0
56 TraesCS4D01G027100 chr6A 92.169 166 9 4 2605 2769 201641594 201641756 1.460000e-56 231.0
57 TraesCS4D01G027100 chr6A 93.651 63 4 0 3834 3896 201643030 201643092 2.000000e-15 95.3
58 TraesCS4D01G027100 chr6A 91.304 46 4 0 5327 5372 201644840 201644885 5.630000e-06 63.9
59 TraesCS4D01G027100 chr6A 100.000 32 0 0 5587 5618 201645045 201645076 7.280000e-05 60.2
60 TraesCS4D01G027100 chr6A 100.000 29 0 0 5345 5373 201644828 201644856 3.000000e-03 54.7
61 TraesCS4D01G027100 chr2D 85.258 814 86 15 5931 6723 567969266 567970066 0.000000e+00 808.0
62 TraesCS4D01G027100 chr2D 87.952 83 9 1 3996 4078 108927045 108927126 5.550000e-16 97.1
63 TraesCS4D01G027100 chr2D 100.000 37 0 0 2777 2813 38066392 38066428 1.210000e-07 69.4
64 TraesCS4D01G027100 chr2D 100.000 29 0 0 2777 2805 601701157 601701129 3.000000e-03 54.7
65 TraesCS4D01G027100 chr1A 85.290 673 71 12 5936 6588 71547187 71547851 0.000000e+00 669.0
66 TraesCS4D01G027100 chr1A 84.021 194 22 5 3982 4167 477046913 477047105 1.930000e-40 178.0
67 TraesCS4D01G027100 chr6B 79.747 790 102 27 1571 2334 247007644 247006887 2.780000e-143 520.0
68 TraesCS4D01G027100 chr5D 79.381 776 94 40 1570 2332 549015293 549014571 2.820000e-133 486.0
69 TraesCS4D01G027100 chr7B 81.926 592 67 19 1564 2142 332166340 332166904 1.320000e-126 464.0
70 TraesCS4D01G027100 chr7B 83.399 506 50 13 1571 2066 531912772 531913253 8.000000e-119 438.0
71 TraesCS4D01G027100 chr7B 81.095 566 66 19 1567 2115 531906207 531905666 1.350000e-111 414.0
72 TraesCS4D01G027100 chr7B 82.432 148 22 3 1152 1297 332166209 332166354 7.080000e-25 126.0
73 TraesCS4D01G027100 chr1D 90.977 133 12 0 3982 4114 376864979 376865111 5.360000e-41 180.0
74 TraesCS4D01G027100 chr1B 88.462 130 13 1 3982 4111 503627105 503627232 9.030000e-34 156.0
75 TraesCS4D01G027100 chr7D 85.185 135 20 0 1152 1286 53625085 53624951 9.090000e-29 139.0
76 TraesCS4D01G027100 chr2B 87.952 83 9 1 3996 4078 158623585 158623666 5.550000e-16 97.1
77 TraesCS4D01G027100 chr2B 100.000 36 0 0 2777 2812 18809639 18809604 4.350000e-07 67.6
78 TraesCS4D01G027100 chr2A 87.952 83 9 1 3996 4078 104875040 104875121 5.550000e-16 97.1
79 TraesCS4D01G027100 chrUn 86.047 86 12 0 5942 6027 144768942 144769027 7.180000e-15 93.5
80 TraesCS4D01G027100 chrUn 86.047 86 12 0 5942 6027 144838188 144838273 7.180000e-15 93.5
81 TraesCS4D01G027100 chrUn 86.047 86 12 0 5942 6027 144881900 144881985 7.180000e-15 93.5
82 TraesCS4D01G027100 chrUn 86.047 86 12 0 5942 6027 144920485 144920570 7.180000e-15 93.5
83 TraesCS4D01G027100 chrUn 86.047 86 12 0 5942 6027 144957025 144957110 7.180000e-15 93.5
84 TraesCS4D01G027100 chrUn 86.047 86 12 0 5942 6027 179845613 179845698 7.180000e-15 93.5
85 TraesCS4D01G027100 chrUn 86.047 86 12 0 5942 6027 246182887 246182972 7.180000e-15 93.5
86 TraesCS4D01G027100 chr5B 82.609 69 6 6 2744 2808 21154030 21154096 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G027100 chr4D 12016251 12022973 6722 False 12416.000000 12416 100.00000 1 6723 1 chr4D.!!$F1 6722
1 TraesCS4D01G027100 chr4D 13346931 13349988 3057 True 271.200000 409 86.08975 2001 4853 4 chr4D.!!$R3 2852
2 TraesCS4D01G027100 chr4A 590498111 590504096 5985 True 2632.666667 7081 90.14400 1 5772 3 chr4A.!!$R3 5771
3 TraesCS4D01G027100 chr4A 588643508 588644702 1194 False 785.000000 785 79.17000 1105 2296 1 chr4A.!!$F3 1191
4 TraesCS4D01G027100 chr4A 590432341 590433094 753 True 369.000000 532 86.79600 1149 2200 2 chr4A.!!$R2 1051
5 TraesCS4D01G027100 chr4B 21476782 21482415 5633 True 3683.000000 7053 86.74050 349 5774 2 chr4B.!!$R1 5425
6 TraesCS4D01G027100 chr4B 24064480 24065492 1012 True 264.500000 303 87.38100 2001 2769 2 chr4B.!!$R2 768
7 TraesCS4D01G027100 chr7A 141895547 141901211 5664 False 369.750000 900 84.42700 1105 5743 4 chr7A.!!$F5 4638
8 TraesCS4D01G027100 chr7A 140761122 140766542 5420 False 310.560000 889 85.90220 1120 5743 5 chr7A.!!$F1 4623
9 TraesCS4D01G027100 chr7A 141304790 141310152 5362 False 308.360000 883 85.97760 1105 5743 5 chr7A.!!$F3 4638
10 TraesCS4D01G027100 chr7A 141644792 141650531 5739 False 308.360000 878 85.86720 1120 5743 5 chr7A.!!$F4 4623
11 TraesCS4D01G027100 chr7A 141050014 141055984 5970 False 305.660000 870 87.40620 1120 5743 5 chr7A.!!$F2 4623
12 TraesCS4D01G027100 chr6A 201639882 201645076 5194 False 259.512500 857 90.52275 1105 5618 8 chr6A.!!$F1 4513
13 TraesCS4D01G027100 chr2D 567969266 567970066 800 False 808.000000 808 85.25800 5931 6723 1 chr2D.!!$F3 792
14 TraesCS4D01G027100 chr1A 71547187 71547851 664 False 669.000000 669 85.29000 5936 6588 1 chr1A.!!$F1 652
15 TraesCS4D01G027100 chr6B 247006887 247007644 757 True 520.000000 520 79.74700 1571 2334 1 chr6B.!!$R1 763
16 TraesCS4D01G027100 chr5D 549014571 549015293 722 True 486.000000 486 79.38100 1570 2332 1 chr5D.!!$R1 762
17 TraesCS4D01G027100 chr7B 531905666 531906207 541 True 414.000000 414 81.09500 1567 2115 1 chr7B.!!$R1 548
18 TraesCS4D01G027100 chr7B 332166209 332166904 695 False 295.000000 464 82.17900 1152 2142 2 chr7B.!!$F2 990

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
519 542 0.110295 TTGCTAAGCACTCAAGGCCA 59.890 50.000 5.01 0.00 38.71 5.36 F
1491 1742 0.108207 GGAGCAGCTGCATCACCTAT 59.892 55.000 38.24 17.06 45.16 2.57 F
1730 1982 0.617820 ACTCCGCTTATGGTGGGAGT 60.618 55.000 5.78 5.78 45.18 3.85 F
2574 3417 2.292292 TGAAGAAACCAAGTTTAGCGCC 59.708 45.455 2.29 0.00 35.77 6.53 F
3128 4147 2.509964 CAAGGTCCTAGGCCCTTTACAT 59.490 50.000 21.71 0.00 39.04 2.29 F
4087 5753 1.556911 GTTCTCTGATGCCCCTTCTGA 59.443 52.381 0.00 0.00 0.00 3.27 F
5427 9385 0.868406 CAGCCGAGGAACTTCAACAC 59.132 55.000 0.00 0.00 41.55 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1714 1966 1.120530 ACTACTCCCACCATAAGCGG 58.879 55.000 0.00 0.0 0.00 5.52 R
3156 4192 0.167908 TAATCAAGCTTGCGCAACGG 59.832 50.000 21.02 12.2 39.10 4.44 R
3461 4646 2.042279 AAAAGGTGGGGGATGGGCAA 62.042 55.000 0.00 0.0 0.00 4.52 R
3929 5595 1.003233 ACTTTCCCACCCAAGATCGTC 59.997 52.381 0.00 0.0 0.00 4.20 R
4955 6856 1.265095 ACATTTTGCACGTCTGCTGAG 59.735 47.619 0.00 0.0 44.57 3.35 R
5465 9426 0.036010 CCTCCCTGGTTGCTGTAGTG 60.036 60.000 0.00 0.0 0.00 2.74 R
6648 10659 0.030504 CGCACTGTGTTGCAAATCCA 59.969 50.000 9.86 0.0 43.15 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.040147 ACACGAAGATCCGTCAACAAT 57.960 42.857 0.00 0.00 41.29 2.71
28 29 3.181530 CGAAGATCCGTCAACAATGTCAC 60.182 47.826 0.00 0.00 0.00 3.67
32 33 2.065512 TCCGTCAACAATGTCACGATG 58.934 47.619 16.43 6.15 34.06 3.84
52 53 2.632996 TGGACAAACTCGTGGAGAATCT 59.367 45.455 0.00 0.00 33.32 2.40
53 54 3.830178 TGGACAAACTCGTGGAGAATCTA 59.170 43.478 0.00 0.00 33.32 1.98
57 58 3.528597 AACTCGTGGAGAATCTAAGCC 57.471 47.619 0.00 0.00 33.32 4.35
75 76 1.804748 GCCCGAAAGACAAACTCGAAT 59.195 47.619 0.00 0.00 34.52 3.34
85 86 2.415512 ACAAACTCGAATAAGAAGCGCC 59.584 45.455 2.29 0.00 0.00 6.53
86 87 2.380084 AACTCGAATAAGAAGCGCCA 57.620 45.000 2.29 0.00 0.00 5.69
189 190 1.992277 GCAGCAGGAAGAGGGGAGA 60.992 63.158 0.00 0.00 0.00 3.71
207 208 2.349755 CAAATCCGTCGGGTGGGT 59.650 61.111 12.29 0.00 33.83 4.51
210 211 1.770749 AAATCCGTCGGGTGGGTTCA 61.771 55.000 12.29 0.00 33.83 3.18
211 212 1.559065 AATCCGTCGGGTGGGTTCAT 61.559 55.000 12.29 0.00 33.83 2.57
214 215 2.975536 GTCGGGTGGGTTCATCGA 59.024 61.111 0.00 0.00 32.30 3.59
241 242 1.804748 CGAAGGGAAGGGAAGAAAACG 59.195 52.381 0.00 0.00 0.00 3.60
288 290 6.912591 GTGCCTTTATTTGATCCTTTATGACG 59.087 38.462 0.00 0.00 0.00 4.35
309 311 4.990004 CGACAATATATCGTGGTTGTTCG 58.010 43.478 1.96 0.00 35.15 3.95
322 324 1.135689 GTTGTTCGGATGCAAGCGAAT 60.136 47.619 0.00 0.00 0.00 3.34
347 349 8.867112 TGAGGTTATATTCGTATGAAGACAAC 57.133 34.615 5.13 5.13 37.57 3.32
360 363 8.714179 CGTATGAAGACAACACCTATTTTACAA 58.286 33.333 0.00 0.00 0.00 2.41
399 402 4.630644 TGCTCAGAAGGTCATCTTTCTT 57.369 40.909 0.00 0.00 37.80 2.52
402 405 4.391523 GCTCAGAAGGTCATCTTTCTTCAC 59.608 45.833 0.00 0.00 37.80 3.18
469 472 4.946784 ACTATTCTTTTGTCATCCGCAC 57.053 40.909 0.00 0.00 0.00 5.34
501 524 6.032956 TGATATACAACGTCACCTGTCTTT 57.967 37.500 0.00 0.00 0.00 2.52
503 526 1.014352 ACAACGTCACCTGTCTTTGC 58.986 50.000 0.00 0.00 0.00 3.68
519 542 0.110295 TTGCTAAGCACTCAAGGCCA 59.890 50.000 5.01 0.00 38.71 5.36
540 563 1.791785 CGCGGTTGCATGTTTCATTTT 59.208 42.857 0.00 0.00 42.97 1.82
581 604 5.587043 ACACAACCAAGAGTTCAACGAATTA 59.413 36.000 0.00 0.00 36.18 1.40
588 611 7.444183 ACCAAGAGTTCAACGAATTATTGAAGA 59.556 33.333 14.62 0.00 44.55 2.87
622 646 5.509716 AGTTGTTAAGGCTTGTAAACACC 57.490 39.130 10.69 5.44 31.92 4.16
626 650 1.601166 AAGGCTTGTAAACACCGACC 58.399 50.000 0.00 0.00 0.00 4.79
745 769 3.195825 ACCAAAGACACCTCCTTCTATCG 59.804 47.826 0.00 0.00 0.00 2.92
756 780 4.082463 CCTCCTTCTATCGTCATAGGCTTC 60.082 50.000 0.00 0.00 33.79 3.86
919 1164 3.810188 GCCCTACCCCTCCCTTGC 61.810 72.222 0.00 0.00 0.00 4.01
942 1187 3.206150 CATAAATTCCAGTCTCCCACGG 58.794 50.000 0.00 0.00 0.00 4.94
980 1225 4.808238 GACTCGACCCGACGCGAC 62.808 72.222 15.93 5.54 32.51 5.19
982 1227 4.517703 CTCGACCCGACGCGACTC 62.518 72.222 15.93 0.00 32.51 3.36
1024 1269 2.949644 CAAATCGCCCCTAAAACCCTAG 59.050 50.000 0.00 0.00 0.00 3.02
1025 1270 0.472898 ATCGCCCCTAAAACCCTAGC 59.527 55.000 0.00 0.00 0.00 3.42
1026 1271 1.153025 CGCCCCTAAAACCCTAGCC 60.153 63.158 0.00 0.00 0.00 3.93
1491 1742 0.108207 GGAGCAGCTGCATCACCTAT 59.892 55.000 38.24 17.06 45.16 2.57
1714 1966 7.891183 ACTTGTGAGTGTTGTTGATATACTC 57.109 36.000 0.00 0.00 38.52 2.59
1715 1967 6.874134 ACTTGTGAGTGTTGTTGATATACTCC 59.126 38.462 0.00 0.00 37.54 3.85
1716 1968 5.407502 TGTGAGTGTTGTTGATATACTCCG 58.592 41.667 0.00 0.00 37.54 4.63
1717 1969 4.267928 GTGAGTGTTGTTGATATACTCCGC 59.732 45.833 0.00 0.00 37.54 5.54
1718 1970 4.159693 TGAGTGTTGTTGATATACTCCGCT 59.840 41.667 0.00 0.00 37.54 5.52
1719 1971 5.086104 AGTGTTGTTGATATACTCCGCTT 57.914 39.130 0.00 0.00 0.00 4.68
1720 1972 6.127563 TGAGTGTTGTTGATATACTCCGCTTA 60.128 38.462 0.00 0.00 37.54 3.09
1721 1973 6.817184 AGTGTTGTTGATATACTCCGCTTAT 58.183 36.000 0.00 0.00 0.00 1.73
1722 1974 6.701841 AGTGTTGTTGATATACTCCGCTTATG 59.298 38.462 0.00 0.00 0.00 1.90
1723 1975 5.989168 TGTTGTTGATATACTCCGCTTATGG 59.011 40.000 0.00 0.00 0.00 2.74
1724 1976 5.801531 TGTTGATATACTCCGCTTATGGT 57.198 39.130 0.00 0.00 0.00 3.55
1725 1977 5.538118 TGTTGATATACTCCGCTTATGGTG 58.462 41.667 0.00 0.00 0.00 4.17
1726 1978 4.801330 TGATATACTCCGCTTATGGTGG 57.199 45.455 0.00 0.00 46.40 4.61
1727 1979 3.513912 TGATATACTCCGCTTATGGTGGG 59.486 47.826 0.00 0.00 45.18 4.61
1728 1980 2.097110 ATACTCCGCTTATGGTGGGA 57.903 50.000 0.00 0.00 45.18 4.37
1729 1981 1.410004 TACTCCGCTTATGGTGGGAG 58.590 55.000 4.47 4.47 45.18 4.30
1730 1982 0.617820 ACTCCGCTTATGGTGGGAGT 60.618 55.000 5.78 5.78 45.18 3.85
1750 2002 7.069578 TGGGAGTAGTAGATTTGTTATCTGGTC 59.930 40.741 0.00 0.00 0.00 4.02
2149 2434 8.834465 GTGCTGATTCAGTAGTAATGATCAATT 58.166 33.333 14.90 0.00 33.43 2.32
2213 2518 4.023707 GCTGTTCTATATGGATGTTGTGGC 60.024 45.833 0.00 0.00 0.00 5.01
2432 3250 4.931661 TTCGGAGTCTACTTTGTTGTCT 57.068 40.909 0.00 0.00 0.00 3.41
2440 3258 9.141400 GGAGTCTACTTTGTTGTCTATTACTTG 57.859 37.037 0.00 0.00 0.00 3.16
2492 3318 8.206189 ACCTGATGTCAAAACATTCTGAAAAAT 58.794 29.630 0.00 0.00 46.20 1.82
2555 3397 3.273434 GGCATTTCTGTAGCATGAGTGA 58.727 45.455 0.00 0.00 0.00 3.41
2574 3417 2.292292 TGAAGAAACCAAGTTTAGCGCC 59.708 45.455 2.29 0.00 35.77 6.53
2745 3718 7.814107 ACATTTGCATGTGTAATTTTACCTGAG 59.186 33.333 2.93 0.00 42.46 3.35
2746 3719 5.309323 TGCATGTGTAATTTTACCTGAGC 57.691 39.130 0.00 0.00 32.72 4.26
2834 3807 6.782082 ATCTAGTACTGAAGAAGCACATGA 57.218 37.500 5.39 0.00 0.00 3.07
2857 3841 5.708736 TCCTGCATTCCATTTTACCTCTA 57.291 39.130 0.00 0.00 0.00 2.43
2864 3848 6.073548 GCATTCCATTTTACCTCTATCTGTCG 60.074 42.308 0.00 0.00 0.00 4.35
2926 3926 9.755064 CTTACGACCAACATAACTTTGATAAAG 57.245 33.333 0.00 0.05 44.10 1.85
3128 4147 2.509964 CAAGGTCCTAGGCCCTTTACAT 59.490 50.000 21.71 0.00 39.04 2.29
3144 4180 7.883311 GCCCTTTACATAATCTAGCCTTATTGA 59.117 37.037 0.00 0.00 0.00 2.57
3156 4192 3.950395 AGCCTTATTGATCTTGCCAGTTC 59.050 43.478 0.00 0.00 0.00 3.01
3220 4272 7.761704 AGCATTAATATGATAAGTGTAGGCTCG 59.238 37.037 0.00 0.00 33.37 5.03
3315 4370 8.064222 CACTCTTTTGTATGTGTACTCAAACTG 58.936 37.037 1.11 0.26 31.07 3.16
3563 4748 5.943416 TGGTAATATCACAGTTCTTTGGTGG 59.057 40.000 0.00 0.00 33.45 4.61
3778 5404 5.163530 TGTTTTGCGCCATATGATGAGAAAT 60.164 36.000 4.18 0.00 0.00 2.17
4087 5753 1.556911 GTTCTCTGATGCCCCTTCTGA 59.443 52.381 0.00 0.00 0.00 3.27
4095 5761 3.203710 TGATGCCCCTTCTGATTCTTCAT 59.796 43.478 0.00 0.00 0.00 2.57
4113 5779 7.537596 TCTTCATTTTGTATGTGATTTGGGT 57.462 32.000 0.00 0.00 0.00 4.51
4135 5824 1.678101 GAGTGCCTCAGCTTTGTTTGT 59.322 47.619 0.00 0.00 40.80 2.83
4159 5848 4.133078 GGGTTGATTGCATTTGTTTTCCA 58.867 39.130 0.00 0.00 0.00 3.53
4177 5866 7.041030 TGTTTTCCATTCATACGTTTTCAGCTA 60.041 33.333 0.00 0.00 0.00 3.32
4212 5903 4.590647 TGTCCTTCTCATTCTGAGTGTCTT 59.409 41.667 4.21 0.00 44.58 3.01
4278 5969 5.613358 AACTTGTATTAGCAGTGTCTTGC 57.387 39.130 0.00 0.00 44.41 4.01
4279 5970 4.641396 ACTTGTATTAGCAGTGTCTTGCA 58.359 39.130 0.52 0.00 46.47 4.08
4295 5986 4.695455 GTCTTGCACTGCCTGTTATTAAGA 59.305 41.667 0.00 0.00 0.00 2.10
4362 6054 2.360350 CAGTGAGCCATGCCCGTT 60.360 61.111 0.00 0.00 0.00 4.44
4365 6057 2.046023 TGAGCCATGCCCGTTCTG 60.046 61.111 0.00 0.00 0.00 3.02
4366 6058 2.045926 GAGCCATGCCCGTTCTGT 60.046 61.111 0.00 0.00 0.00 3.41
4689 6541 8.871629 TGGCTAGATTTATTGTTTTGGTTAGA 57.128 30.769 0.00 0.00 0.00 2.10
4763 6633 4.870123 AAGCTGAGCTATGATAGACTGG 57.130 45.455 7.68 0.00 38.25 4.00
4768 6638 3.070159 TGAGCTATGATAGACTGGGCAAC 59.930 47.826 3.13 0.00 0.00 4.17
4773 6643 3.548745 TGATAGACTGGGCAACTGATG 57.451 47.619 0.00 0.00 0.00 3.07
4843 6713 7.843686 CACGGTTTTATTGTTTGACATTTTGAC 59.156 33.333 0.00 0.00 0.00 3.18
4955 6856 9.713740 GAAATTTACAATGATCATCAGTCTGAC 57.286 33.333 9.06 0.00 0.00 3.51
5427 9385 0.868406 CAGCCGAGGAACTTCAACAC 59.132 55.000 0.00 0.00 41.55 3.32
5485 9446 0.178903 ACTACAGCAACCAGGGAGGA 60.179 55.000 0.00 0.00 41.22 3.71
5720 9711 6.127730 GGTTGGTCGATAAATGTGGAATCTTT 60.128 38.462 0.00 0.00 0.00 2.52
5774 9765 3.370104 TCCCTTGTTGCTTCTTTTTCCA 58.630 40.909 0.00 0.00 0.00 3.53
5775 9766 3.132111 TCCCTTGTTGCTTCTTTTTCCAC 59.868 43.478 0.00 0.00 0.00 4.02
5776 9767 3.115554 CCTTGTTGCTTCTTTTTCCACG 58.884 45.455 0.00 0.00 0.00 4.94
5777 9768 3.181491 CCTTGTTGCTTCTTTTTCCACGA 60.181 43.478 0.00 0.00 0.00 4.35
5778 9769 3.691049 TGTTGCTTCTTTTTCCACGAG 57.309 42.857 0.00 0.00 0.00 4.18
5779 9770 2.223479 TGTTGCTTCTTTTTCCACGAGC 60.223 45.455 0.00 0.00 0.00 5.03
5780 9771 1.674359 TGCTTCTTTTTCCACGAGCA 58.326 45.000 0.00 0.00 0.00 4.26
5781 9772 2.229792 TGCTTCTTTTTCCACGAGCAT 58.770 42.857 0.00 0.00 0.00 3.79
5782 9773 3.407698 TGCTTCTTTTTCCACGAGCATA 58.592 40.909 0.00 0.00 0.00 3.14
5783 9774 3.436704 TGCTTCTTTTTCCACGAGCATAG 59.563 43.478 0.00 0.00 0.00 2.23
5784 9775 3.437049 GCTTCTTTTTCCACGAGCATAGT 59.563 43.478 0.00 0.00 0.00 2.12
5785 9776 4.670221 GCTTCTTTTTCCACGAGCATAGTG 60.670 45.833 0.00 0.00 41.69 2.74
5786 9777 4.002906 TCTTTTTCCACGAGCATAGTGT 57.997 40.909 0.00 0.00 40.32 3.55
5787 9778 4.385825 TCTTTTTCCACGAGCATAGTGTT 58.614 39.130 0.00 0.00 40.32 3.32
5788 9779 4.819630 TCTTTTTCCACGAGCATAGTGTTT 59.180 37.500 0.00 0.00 40.32 2.83
5789 9780 5.298276 TCTTTTTCCACGAGCATAGTGTTTT 59.702 36.000 0.00 0.00 40.32 2.43
5790 9781 6.483974 TCTTTTTCCACGAGCATAGTGTTTTA 59.516 34.615 0.00 0.00 40.32 1.52
5791 9782 6.621316 TTTTCCACGAGCATAGTGTTTTAA 57.379 33.333 0.00 0.00 40.32 1.52
5792 9783 5.600908 TTCCACGAGCATAGTGTTTTAAC 57.399 39.130 0.00 0.00 40.32 2.01
5793 9784 4.890088 TCCACGAGCATAGTGTTTTAACT 58.110 39.130 0.00 0.00 40.32 2.24
5794 9785 6.028146 TCCACGAGCATAGTGTTTTAACTA 57.972 37.500 0.00 0.00 40.32 2.24
5795 9786 6.636705 TCCACGAGCATAGTGTTTTAACTAT 58.363 36.000 0.00 0.00 42.79 2.12
5803 9794 4.281898 AGTGTTTTAACTATGGCGACCT 57.718 40.909 0.00 0.00 0.00 3.85
5804 9795 4.000988 AGTGTTTTAACTATGGCGACCTG 58.999 43.478 0.00 0.00 0.00 4.00
5805 9796 3.998341 GTGTTTTAACTATGGCGACCTGA 59.002 43.478 0.00 0.00 0.00 3.86
5806 9797 4.634443 GTGTTTTAACTATGGCGACCTGAT 59.366 41.667 0.00 0.00 0.00 2.90
5807 9798 4.634004 TGTTTTAACTATGGCGACCTGATG 59.366 41.667 0.00 0.00 0.00 3.07
5808 9799 4.746535 TTTAACTATGGCGACCTGATGA 57.253 40.909 0.00 0.00 0.00 2.92
5809 9800 4.955811 TTAACTATGGCGACCTGATGAT 57.044 40.909 0.00 0.00 0.00 2.45
5810 9801 2.827800 ACTATGGCGACCTGATGATG 57.172 50.000 0.00 0.00 0.00 3.07
5811 9802 1.270518 ACTATGGCGACCTGATGATGC 60.271 52.381 0.00 0.00 0.00 3.91
5812 9803 0.758123 TATGGCGACCTGATGATGCA 59.242 50.000 0.00 0.00 0.00 3.96
5813 9804 0.109913 ATGGCGACCTGATGATGCAT 59.890 50.000 0.00 0.00 0.00 3.96
5814 9805 0.816421 TGGCGACCTGATGATGCATG 60.816 55.000 2.46 0.00 0.00 4.06
5815 9806 0.533531 GGCGACCTGATGATGCATGA 60.534 55.000 2.46 0.00 0.00 3.07
5816 9807 1.302366 GCGACCTGATGATGCATGAA 58.698 50.000 2.46 0.00 0.00 2.57
5817 9808 1.263484 GCGACCTGATGATGCATGAAG 59.737 52.381 2.46 0.00 0.00 3.02
5818 9809 1.871676 CGACCTGATGATGCATGAAGG 59.128 52.381 2.46 2.57 33.18 3.46
5819 9810 2.228059 GACCTGATGATGCATGAAGGG 58.772 52.381 2.46 2.22 31.97 3.95
5820 9811 1.848388 ACCTGATGATGCATGAAGGGA 59.152 47.619 2.46 0.00 31.97 4.20
5821 9812 2.158652 ACCTGATGATGCATGAAGGGAG 60.159 50.000 2.46 0.00 31.97 4.30
5822 9813 2.158652 CCTGATGATGCATGAAGGGAGT 60.159 50.000 2.46 0.00 0.00 3.85
5823 9814 3.552875 CTGATGATGCATGAAGGGAGTT 58.447 45.455 2.46 0.00 0.00 3.01
5824 9815 3.548770 TGATGATGCATGAAGGGAGTTC 58.451 45.455 2.46 0.00 35.48 3.01
5825 9816 3.201487 TGATGATGCATGAAGGGAGTTCT 59.799 43.478 2.46 0.00 35.99 3.01
5826 9817 3.272574 TGATGCATGAAGGGAGTTCTC 57.727 47.619 2.46 0.00 35.99 2.87
5827 9818 2.573009 TGATGCATGAAGGGAGTTCTCA 59.427 45.455 2.46 0.00 35.99 3.27
5828 9819 3.201487 TGATGCATGAAGGGAGTTCTCAT 59.799 43.478 2.46 0.00 35.99 2.90
5829 9820 2.995283 TGCATGAAGGGAGTTCTCATG 58.005 47.619 0.00 6.87 40.57 3.07
5830 9821 2.295885 GCATGAAGGGAGTTCTCATGG 58.704 52.381 11.94 0.00 38.72 3.66
5831 9822 2.356535 GCATGAAGGGAGTTCTCATGGT 60.357 50.000 11.94 0.00 38.72 3.55
5832 9823 3.276857 CATGAAGGGAGTTCTCATGGTG 58.723 50.000 3.82 0.00 35.99 4.17
5833 9824 1.630369 TGAAGGGAGTTCTCATGGTGG 59.370 52.381 0.00 0.00 35.99 4.61
5834 9825 1.909302 GAAGGGAGTTCTCATGGTGGA 59.091 52.381 0.00 0.00 31.73 4.02
5835 9826 1.577736 AGGGAGTTCTCATGGTGGAG 58.422 55.000 0.00 0.00 36.21 3.86
5836 9827 1.079490 AGGGAGTTCTCATGGTGGAGA 59.921 52.381 0.00 0.00 41.99 3.71
5837 9828 1.208293 GGGAGTTCTCATGGTGGAGAC 59.792 57.143 0.00 0.00 43.31 3.36
5838 9829 2.183679 GGAGTTCTCATGGTGGAGACT 58.816 52.381 0.00 0.00 43.31 3.24
5839 9830 2.093764 GGAGTTCTCATGGTGGAGACTG 60.094 54.545 0.00 0.00 43.31 3.51
5840 9831 2.828520 GAGTTCTCATGGTGGAGACTGA 59.171 50.000 0.00 0.00 43.31 3.41
5841 9832 3.242867 AGTTCTCATGGTGGAGACTGAA 58.757 45.455 0.00 0.00 43.31 3.02
5842 9833 3.260380 AGTTCTCATGGTGGAGACTGAAG 59.740 47.826 0.00 0.00 43.31 3.02
5843 9834 2.894731 TCTCATGGTGGAGACTGAAGT 58.105 47.619 0.00 0.00 38.95 3.01
5844 9835 2.828520 TCTCATGGTGGAGACTGAAGTC 59.171 50.000 2.06 2.06 45.08 3.01
6000 9991 1.955080 CCTCGGTACCTGTAGGATCAC 59.045 57.143 16.16 0.00 38.94 3.06
6013 10004 0.802607 GGATCACGAGCTCGACAACC 60.803 60.000 40.58 29.63 43.02 3.77
6016 10007 1.660575 CACGAGCTCGACAACCGTT 60.661 57.895 40.58 14.59 43.02 4.44
6037 10041 1.833630 TGATCTTCTTCCCGTGCATCT 59.166 47.619 0.00 0.00 0.00 2.90
6076 10080 2.266627 GCCTTGCTGTGCTCTTGCT 61.267 57.895 6.07 0.00 40.48 3.91
6080 10084 1.540267 CTTGCTGTGCTCTTGCTGAAT 59.460 47.619 6.07 0.00 40.48 2.57
6136 10142 5.595952 AGAAAAGACCTCTGTTGCAGAAAAT 59.404 36.000 0.37 0.00 40.18 1.82
6160 10167 2.022240 TTCGTTGTTGCCCCCTTTGC 62.022 55.000 0.00 0.00 0.00 3.68
6161 10168 2.790791 CGTTGTTGCCCCCTTTGCA 61.791 57.895 0.00 0.00 36.84 4.08
6162 10169 1.524482 GTTGTTGCCCCCTTTGCAA 59.476 52.632 0.00 0.00 45.83 4.08
6186 10193 1.811679 GCGCTTGCTCCCTCTACAC 60.812 63.158 0.00 0.00 35.07 2.90
6196 10203 3.366396 CTCCCTCTACACCAAGAAGCTA 58.634 50.000 0.00 0.00 0.00 3.32
6207 10218 4.217118 CACCAAGAAGCTAGTTGCAGAAAT 59.783 41.667 0.00 0.00 45.94 2.17
6264 10275 2.788786 CACCATTTGCAACAAAGTCGTC 59.211 45.455 0.00 0.00 0.00 4.20
6270 10281 3.887777 CAACAAAGTCGTCGTTGCA 57.112 47.368 8.07 0.00 36.72 4.08
6322 10333 2.047655 GGGCCACGATGAACGACA 60.048 61.111 4.39 0.00 45.77 4.35
6347 10358 2.363292 TAGCTAGGTAGGTCCCCGGC 62.363 65.000 0.00 0.00 36.75 6.13
6419 10430 2.294078 CCCCTCTTCCCAAGCTCGT 61.294 63.158 0.00 0.00 0.00 4.18
6422 10433 0.179097 CCTCTTCCCAAGCTCGTAGC 60.179 60.000 0.00 0.00 42.84 3.58
6430 10441 1.873591 CCAAGCTCGTAGCAGTTTTGT 59.126 47.619 9.09 0.00 45.56 2.83
6436 10447 3.493503 GCTCGTAGCAGTTTTGTAACAGT 59.506 43.478 2.53 0.00 41.89 3.55
6440 10451 6.506147 TCGTAGCAGTTTTGTAACAGTTAGA 58.494 36.000 0.00 0.00 36.70 2.10
6446 10457 7.068226 AGCAGTTTTGTAACAGTTAGATTTGGT 59.932 33.333 0.00 0.00 36.70 3.67
6474 10485 3.084786 TGCTCTCTCTTCTCACGAATGA 58.915 45.455 0.00 0.00 0.00 2.57
6487 10498 2.679837 CACGAATGACAGAGGATTTGGG 59.320 50.000 0.00 0.00 0.00 4.12
6498 10509 1.523154 GGATTTGGGTGCGTGCTTGA 61.523 55.000 0.00 0.00 0.00 3.02
6508 10519 0.373716 GCGTGCTTGAGGGATTTACG 59.626 55.000 0.00 0.00 0.00 3.18
6512 10523 1.287425 GCTTGAGGGATTTACGTCCG 58.713 55.000 0.00 0.00 39.26 4.79
6561 10572 2.430694 GGTTCAGGGGAAAATATGTGGC 59.569 50.000 0.00 0.00 34.13 5.01
6579 10590 1.333619 GGCTGTGCTCTTTTCGTTTGA 59.666 47.619 0.00 0.00 0.00 2.69
6588 10599 7.011950 TGTGCTCTTTTCGTTTGAGATAAGAAA 59.988 33.333 0.00 0.00 37.61 2.52
6617 10628 1.375326 GAGAGTGGTTGTGGGTCCC 59.625 63.158 0.00 0.00 0.00 4.46
6620 10631 0.609131 GAGTGGTTGTGGGTCCCATG 60.609 60.000 15.49 0.00 35.28 3.66
6622 10633 1.152599 TGGTTGTGGGTCCCATGTG 59.847 57.895 15.49 0.00 35.28 3.21
6624 10635 1.458486 GTTGTGGGTCCCATGTGGA 59.542 57.895 15.49 0.00 42.41 4.02
6646 10657 1.889545 TGTGACGCACAATTGATGGA 58.110 45.000 13.59 0.00 41.69 3.41
6647 10658 2.225467 TGTGACGCACAATTGATGGAA 58.775 42.857 13.59 0.00 41.69 3.53
6648 10659 2.819019 TGTGACGCACAATTGATGGAAT 59.181 40.909 13.59 0.00 41.69 3.01
6651 10662 2.423185 GACGCACAATTGATGGAATGGA 59.577 45.455 13.59 0.00 0.00 3.41
6662 10673 3.577415 TGATGGAATGGATTTGCAACACA 59.423 39.130 0.00 0.00 39.28 3.72
6665 10676 3.243805 TGGAATGGATTTGCAACACAGTG 60.244 43.478 0.00 0.00 32.09 3.66
6689 10700 4.811364 GCAGAAGCAGCCTCCCCC 62.811 72.222 0.00 0.00 41.58 5.40
6690 10701 4.479993 CAGAAGCAGCCTCCCCCG 62.480 72.222 0.00 0.00 0.00 5.73
6696 10707 4.659172 CAGCCTCCCCCGCAACAA 62.659 66.667 0.00 0.00 0.00 2.83
6697 10708 4.351054 AGCCTCCCCCGCAACAAG 62.351 66.667 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 2.448926 TCGTGACATTGTTGACGGAT 57.551 45.000 17.24 0.00 32.68 4.18
15 16 2.805671 TGTCCATCGTGACATTGTTGAC 59.194 45.455 0.00 0.00 40.22 3.18
18 19 3.882888 AGTTTGTCCATCGTGACATTGTT 59.117 39.130 6.14 0.00 44.27 2.83
23 24 1.067974 ACGAGTTTGTCCATCGTGACA 59.932 47.619 0.00 1.98 46.99 3.58
28 29 1.067846 TCTCCACGAGTTTGTCCATCG 60.068 52.381 0.00 0.00 42.04 3.84
32 33 3.320673 AGATTCTCCACGAGTTTGTCC 57.679 47.619 0.00 0.00 0.00 4.02
36 37 3.369576 GGGCTTAGATTCTCCACGAGTTT 60.370 47.826 0.00 0.00 0.00 2.66
40 41 0.744874 CGGGCTTAGATTCTCCACGA 59.255 55.000 0.00 0.00 0.00 4.35
41 42 0.744874 TCGGGCTTAGATTCTCCACG 59.255 55.000 0.00 0.00 0.00 4.94
52 53 2.036217 TCGAGTTTGTCTTTCGGGCTTA 59.964 45.455 0.00 0.00 35.21 3.09
53 54 1.202604 TCGAGTTTGTCTTTCGGGCTT 60.203 47.619 0.00 0.00 35.21 4.35
57 58 6.462073 TTCTTATTCGAGTTTGTCTTTCGG 57.538 37.500 0.00 0.00 35.21 4.30
75 76 1.671054 GCAGGTGTGGCGCTTCTTA 60.671 57.895 7.64 0.00 0.00 2.10
85 86 2.937469 TTTGTTGTCTTGCAGGTGTG 57.063 45.000 0.00 0.00 0.00 3.82
86 87 3.258123 AGTTTTTGTTGTCTTGCAGGTGT 59.742 39.130 0.00 0.00 0.00 4.16
150 151 3.537874 AGCGGTCGATAGTGGGGC 61.538 66.667 0.00 0.00 37.40 5.80
155 156 1.729470 CTGCTCCAGCGGTCGATAGT 61.729 60.000 0.00 0.00 45.83 2.12
175 176 2.092699 GGATTTGTCTCCCCTCTTCCTG 60.093 54.545 0.00 0.00 0.00 3.86
189 190 2.059345 AACCCACCCGACGGATTTGT 62.059 55.000 17.49 0.75 0.00 2.83
207 208 0.457853 CCTTCGGCTTCGTCGATGAA 60.458 55.000 18.65 18.65 40.05 2.57
210 211 1.601419 TTCCCTTCGGCTTCGTCGAT 61.601 55.000 0.00 0.00 40.05 3.59
211 212 2.209064 CTTCCCTTCGGCTTCGTCGA 62.209 60.000 0.00 0.00 38.09 4.20
214 215 2.663196 CCTTCCCTTCGGCTTCGT 59.337 61.111 0.00 0.00 35.06 3.85
228 229 2.932261 ACTCTTGCGTTTTCTTCCCTT 58.068 42.857 0.00 0.00 0.00 3.95
230 231 6.679327 ATATAACTCTTGCGTTTTCTTCCC 57.321 37.500 0.00 0.00 0.00 3.97
233 234 9.431887 TGAACTATATAACTCTTGCGTTTTCTT 57.568 29.630 0.00 0.00 0.00 2.52
241 242 7.095439 GGCACTCATGAACTATATAACTCTTGC 60.095 40.741 0.00 0.00 0.00 4.01
288 290 5.045215 TCCGAACAACCACGATATATTGTC 58.955 41.667 2.33 0.00 34.24 3.18
300 302 1.851021 CGCTTGCATCCGAACAACCA 61.851 55.000 0.67 0.00 0.00 3.67
301 303 1.154225 CGCTTGCATCCGAACAACC 60.154 57.895 0.67 0.00 0.00 3.77
309 311 1.098050 AACCTCATTCGCTTGCATCC 58.902 50.000 0.00 0.00 0.00 3.51
322 324 8.471609 TGTTGTCTTCATACGAATATAACCTCA 58.528 33.333 0.00 0.00 32.07 3.86
378 381 4.040829 TGAAGAAAGATGACCTTCTGAGCA 59.959 41.667 0.00 0.00 37.69 4.26
379 382 4.391523 GTGAAGAAAGATGACCTTCTGAGC 59.608 45.833 0.00 0.00 37.69 4.26
382 385 4.645535 TGGTGAAGAAAGATGACCTTCTG 58.354 43.478 0.00 0.00 37.69 3.02
383 386 4.982241 TGGTGAAGAAAGATGACCTTCT 57.018 40.909 0.00 0.00 37.69 2.85
385 388 3.760684 GCATGGTGAAGAAAGATGACCTT 59.239 43.478 0.00 0.00 36.47 3.50
399 402 2.783135 GTCCTCAAAAGAGCATGGTGA 58.217 47.619 0.00 0.00 0.00 4.02
402 405 1.813513 ACGTCCTCAAAAGAGCATGG 58.186 50.000 0.00 0.00 0.00 3.66
464 467 1.091537 ATATCAAAACGGTGGTGCGG 58.908 50.000 0.00 0.00 0.00 5.69
465 468 2.673862 TGTATATCAAAACGGTGGTGCG 59.326 45.455 0.00 0.00 0.00 5.34
501 524 0.606401 GTGGCCTTGAGTGCTTAGCA 60.606 55.000 1.39 1.39 35.60 3.49
503 526 1.639298 GCGTGGCCTTGAGTGCTTAG 61.639 60.000 3.32 0.00 0.00 2.18
519 542 0.313672 AATGAAACATGCAACCGCGT 59.686 45.000 4.92 0.00 42.97 6.01
523 546 4.996122 TCATCCAAAATGAAACATGCAACC 59.004 37.500 0.00 0.00 0.00 3.77
528 551 7.892778 TGAATGTCATCCAAAATGAAACATG 57.107 32.000 0.00 0.00 30.00 3.21
540 563 4.031636 TGTGTGGAATGAATGTCATCCA 57.968 40.909 0.00 0.00 35.76 3.41
588 611 4.070009 CCTTAACAACTTTAGAAGCGGGT 58.930 43.478 0.00 0.00 0.00 5.28
634 658 5.125417 TGAATAAAGCCCTTGATTCGAAAGG 59.875 40.000 0.00 4.48 41.33 3.11
647 671 4.511826 CCTCGTGAGTAATGAATAAAGCCC 59.488 45.833 0.00 0.00 0.00 5.19
716 740 3.714798 AGGAGGTGTCTTTGGTTGAACTA 59.285 43.478 0.00 0.00 0.00 2.24
717 741 2.509964 AGGAGGTGTCTTTGGTTGAACT 59.490 45.455 0.00 0.00 0.00 3.01
745 769 5.186198 ACACACATAAAGGAAGCCTATGAC 58.814 41.667 0.00 0.00 31.13 3.06
823 1068 5.486526 AGAATGAGCTCGATCTTTCTTTGT 58.513 37.500 13.67 0.00 39.41 2.83
919 1164 3.555966 GTGGGAGACTGGAATTTATGGG 58.444 50.000 0.00 0.00 0.00 4.00
979 1224 3.829311 TTGGGCTTGGGAGGGGAGT 62.829 63.158 0.00 0.00 0.00 3.85
980 1225 1.878799 ATTTGGGCTTGGGAGGGGAG 61.879 60.000 0.00 0.00 0.00 4.30
981 1226 1.861656 ATTTGGGCTTGGGAGGGGA 60.862 57.895 0.00 0.00 0.00 4.81
982 1227 1.381735 GATTTGGGCTTGGGAGGGG 60.382 63.158 0.00 0.00 0.00 4.79
983 1228 1.381735 GGATTTGGGCTTGGGAGGG 60.382 63.158 0.00 0.00 0.00 4.30
1668 1919 1.692042 AGAGGAGCCAGGGTGGATG 60.692 63.158 0.00 0.00 35.51 3.51
1714 1966 1.120530 ACTACTCCCACCATAAGCGG 58.879 55.000 0.00 0.00 0.00 5.52
1715 1967 3.220110 TCTACTACTCCCACCATAAGCG 58.780 50.000 0.00 0.00 0.00 4.68
1716 1968 5.810080 AATCTACTACTCCCACCATAAGC 57.190 43.478 0.00 0.00 0.00 3.09
1717 1969 7.125792 ACAAATCTACTACTCCCACCATAAG 57.874 40.000 0.00 0.00 0.00 1.73
1718 1970 7.504926 AACAAATCTACTACTCCCACCATAA 57.495 36.000 0.00 0.00 0.00 1.90
1719 1971 8.792830 ATAACAAATCTACTACTCCCACCATA 57.207 34.615 0.00 0.00 0.00 2.74
1720 1972 7.569111 AGATAACAAATCTACTACTCCCACCAT 59.431 37.037 0.00 0.00 0.00 3.55
1721 1973 6.901300 AGATAACAAATCTACTACTCCCACCA 59.099 38.462 0.00 0.00 0.00 4.17
1722 1974 7.210873 CAGATAACAAATCTACTACTCCCACC 58.789 42.308 0.00 0.00 0.00 4.61
1723 1975 7.147707 ACCAGATAACAAATCTACTACTCCCAC 60.148 40.741 0.00 0.00 0.00 4.61
1724 1976 6.901300 ACCAGATAACAAATCTACTACTCCCA 59.099 38.462 0.00 0.00 0.00 4.37
1725 1977 7.288158 AGACCAGATAACAAATCTACTACTCCC 59.712 40.741 0.00 0.00 0.00 4.30
1726 1978 8.138712 CAGACCAGATAACAAATCTACTACTCC 58.861 40.741 0.00 0.00 0.00 3.85
1727 1979 8.138712 CCAGACCAGATAACAAATCTACTACTC 58.861 40.741 0.00 0.00 0.00 2.59
1728 1980 7.620094 ACCAGACCAGATAACAAATCTACTACT 59.380 37.037 0.00 0.00 0.00 2.57
1729 1981 7.783042 ACCAGACCAGATAACAAATCTACTAC 58.217 38.462 0.00 0.00 0.00 2.73
1730 1982 7.973048 ACCAGACCAGATAACAAATCTACTA 57.027 36.000 0.00 0.00 0.00 1.82
1750 2002 5.183713 TCAGTCAGCAATAATTTCCAACCAG 59.816 40.000 0.00 0.00 0.00 4.00
2021 2283 2.558359 AGCACAGTTTAAGGGCAATGAC 59.442 45.455 0.00 0.00 0.00 3.06
2155 2460 4.508662 CCAAATGGAGAGACCTTACAGTC 58.491 47.826 0.00 0.00 39.86 3.51
2213 2518 5.597806 TGTCTGTTATATCTAAGCAACGGG 58.402 41.667 0.00 0.00 0.00 5.28
2252 2557 3.312421 TCTTCAGCAGTTTTTCCAGAACG 59.688 43.478 0.00 0.00 32.38 3.95
2492 3318 7.725818 TTACGAACAAAATACATGTGTACCA 57.274 32.000 9.11 0.00 32.72 3.25
2531 3373 0.664761 CATGCTACAGAAATGCCGGG 59.335 55.000 2.18 0.00 0.00 5.73
2533 3375 2.031314 CACTCATGCTACAGAAATGCCG 59.969 50.000 0.00 0.00 0.00 5.69
2544 3386 4.973168 ACTTGGTTTCTTCACTCATGCTA 58.027 39.130 0.00 0.00 0.00 3.49
2555 3397 1.611977 GGGCGCTAAACTTGGTTTCTT 59.388 47.619 7.64 0.00 37.01 2.52
2574 3417 6.834168 ACAAAGGGTACAAATATTGTCAGG 57.166 37.500 0.00 0.00 44.12 3.86
2814 3787 5.658634 AGGATCATGTGCTTCTTCAGTACTA 59.341 40.000 0.00 0.00 38.86 1.82
2815 3788 4.469227 AGGATCATGTGCTTCTTCAGTACT 59.531 41.667 0.00 0.00 38.86 2.73
2816 3789 4.569966 CAGGATCATGTGCTTCTTCAGTAC 59.430 45.833 0.00 0.00 38.57 2.73
2834 3807 5.134725 AGAGGTAAAATGGAATGCAGGAT 57.865 39.130 0.00 0.00 0.00 3.24
2857 3841 2.031682 GCAACAAGCAAGAACGACAGAT 60.032 45.455 0.00 0.00 44.79 2.90
2904 3904 6.607689 TGCTTTATCAAAGTTATGTTGGTCG 58.392 36.000 1.02 0.00 40.64 4.79
3097 4104 3.891049 CCTAGGACCTTGCAGCTTAATT 58.109 45.455 1.05 0.00 0.00 1.40
3128 4147 7.078249 TGGCAAGATCAATAAGGCTAGATTA 57.922 36.000 0.00 0.00 0.00 1.75
3144 4180 1.577328 CGCAACGGAACTGGCAAGAT 61.577 55.000 0.00 0.00 0.00 2.40
3156 4192 0.167908 TAATCAAGCTTGCGCAACGG 59.832 50.000 21.02 12.20 39.10 4.44
3343 4398 6.706270 TGAACTCACAGGTTAGAAATCAGTTC 59.294 38.462 0.00 0.00 38.36 3.01
3461 4646 2.042279 AAAAGGTGGGGGATGGGCAA 62.042 55.000 0.00 0.00 0.00 4.52
3563 4748 5.283457 AGGTGCATCTTAATGGTACTCTC 57.717 43.478 0.00 0.00 33.19 3.20
3778 5404 2.163010 GACCGTCGTGAGTTGGATAAGA 59.837 50.000 0.00 0.00 0.00 2.10
3929 5595 1.003233 ACTTTCCCACCCAAGATCGTC 59.997 52.381 0.00 0.00 0.00 4.20
3987 5653 2.453983 TCTCATCACATGCACAACGA 57.546 45.000 0.00 0.00 0.00 3.85
4087 5753 8.596293 ACCCAAATCACATACAAAATGAAGAAT 58.404 29.630 0.00 0.00 0.00 2.40
4095 5761 5.010516 CACTCCACCCAAATCACATACAAAA 59.989 40.000 0.00 0.00 0.00 2.44
4135 5824 4.578105 GGAAAACAAATGCAATCAACCCAA 59.422 37.500 0.00 0.00 0.00 4.12
4159 5848 7.254117 CGAGTCAATAGCTGAAAACGTATGAAT 60.254 37.037 0.00 0.00 35.22 2.57
4177 5866 6.662865 ATGAGAAGGACATATCGAGTCAAT 57.337 37.500 5.75 0.00 37.74 2.57
4278 5969 7.558161 TGAATCATCTTAATAACAGGCAGTG 57.442 36.000 0.00 0.00 0.00 3.66
4362 6054 3.261643 ACACCAGCTATCATGACAACAGA 59.738 43.478 0.00 0.00 0.00 3.41
4365 6057 8.523658 TCTATATACACCAGCTATCATGACAAC 58.476 37.037 0.00 0.00 0.00 3.32
4366 6058 8.650143 TCTATATACACCAGCTATCATGACAA 57.350 34.615 0.00 0.00 0.00 3.18
4428 6122 2.170187 CCAGGAGAACCTCTCATCAAGG 59.830 54.545 6.05 0.00 45.12 3.61
4472 6193 6.187727 ACAATTGAACCTAGAGACAAGGAA 57.812 37.500 13.59 0.00 37.57 3.36
4513 6364 7.118723 TCTGGACAAAATATAGTGGCTGATTT 58.881 34.615 0.00 0.00 0.00 2.17
4665 6517 8.957466 ACTCTAACCAAAACAATAAATCTAGCC 58.043 33.333 0.00 0.00 0.00 3.93
4689 6541 4.770795 AGCAACAGTAGAAACACTTCACT 58.229 39.130 0.00 0.00 33.64 3.41
4768 6638 7.463544 TCTGATAATTACAAAACGTGCATCAG 58.536 34.615 0.00 0.00 38.67 2.90
4773 6643 5.971202 CCCATCTGATAATTACAAAACGTGC 59.029 40.000 0.00 0.00 0.00 5.34
4843 6713 3.426695 GCTCAATCATTTCACTTGACCCG 60.427 47.826 0.00 0.00 0.00 5.28
4955 6856 1.265095 ACATTTTGCACGTCTGCTGAG 59.735 47.619 0.00 0.00 44.57 3.35
5465 9426 0.036010 CCTCCCTGGTTGCTGTAGTG 60.036 60.000 0.00 0.00 0.00 2.74
5720 9711 2.626266 TGACCTGAAGCTACTTTCGACA 59.374 45.455 0.00 0.00 0.00 4.35
5780 9771 5.815740 CAGGTCGCCATAGTTAAAACACTAT 59.184 40.000 0.00 0.00 40.08 2.12
5781 9772 5.047164 TCAGGTCGCCATAGTTAAAACACTA 60.047 40.000 0.00 0.00 33.70 2.74
5782 9773 4.000988 CAGGTCGCCATAGTTAAAACACT 58.999 43.478 0.00 0.00 0.00 3.55
5783 9774 3.998341 TCAGGTCGCCATAGTTAAAACAC 59.002 43.478 0.00 0.00 0.00 3.32
5784 9775 4.274602 TCAGGTCGCCATAGTTAAAACA 57.725 40.909 0.00 0.00 0.00 2.83
5785 9776 4.873827 TCATCAGGTCGCCATAGTTAAAAC 59.126 41.667 0.00 0.00 0.00 2.43
5786 9777 5.092554 TCATCAGGTCGCCATAGTTAAAA 57.907 39.130 0.00 0.00 0.00 1.52
5787 9778 4.746535 TCATCAGGTCGCCATAGTTAAA 57.253 40.909 0.00 0.00 0.00 1.52
5788 9779 4.631131 CATCATCAGGTCGCCATAGTTAA 58.369 43.478 0.00 0.00 0.00 2.01
5789 9780 3.554960 GCATCATCAGGTCGCCATAGTTA 60.555 47.826 0.00 0.00 0.00 2.24
5790 9781 2.808202 GCATCATCAGGTCGCCATAGTT 60.808 50.000 0.00 0.00 0.00 2.24
5791 9782 1.270518 GCATCATCAGGTCGCCATAGT 60.271 52.381 0.00 0.00 0.00 2.12
5792 9783 1.270465 TGCATCATCAGGTCGCCATAG 60.270 52.381 0.00 0.00 0.00 2.23
5793 9784 0.758123 TGCATCATCAGGTCGCCATA 59.242 50.000 0.00 0.00 0.00 2.74
5794 9785 0.109913 ATGCATCATCAGGTCGCCAT 59.890 50.000 0.00 0.00 0.00 4.40
5795 9786 0.816421 CATGCATCATCAGGTCGCCA 60.816 55.000 0.00 0.00 0.00 5.69
5796 9787 0.533531 TCATGCATCATCAGGTCGCC 60.534 55.000 0.00 0.00 0.00 5.54
5797 9788 1.263484 CTTCATGCATCATCAGGTCGC 59.737 52.381 0.00 0.00 0.00 5.19
5798 9789 1.871676 CCTTCATGCATCATCAGGTCG 59.128 52.381 0.00 0.00 0.00 4.79
5799 9790 2.158711 TCCCTTCATGCATCATCAGGTC 60.159 50.000 0.00 0.00 0.00 3.85
5800 9791 1.848388 TCCCTTCATGCATCATCAGGT 59.152 47.619 0.00 0.00 0.00 4.00
5801 9792 2.158652 ACTCCCTTCATGCATCATCAGG 60.159 50.000 0.00 0.00 0.00 3.86
5802 9793 3.210232 ACTCCCTTCATGCATCATCAG 57.790 47.619 0.00 0.00 0.00 2.90
5803 9794 3.201487 AGAACTCCCTTCATGCATCATCA 59.799 43.478 0.00 0.00 0.00 3.07
5804 9795 3.814283 GAGAACTCCCTTCATGCATCATC 59.186 47.826 0.00 0.00 0.00 2.92
5805 9796 3.201487 TGAGAACTCCCTTCATGCATCAT 59.799 43.478 0.00 0.00 0.00 2.45
5806 9797 2.573009 TGAGAACTCCCTTCATGCATCA 59.427 45.455 0.00 0.00 0.00 3.07
5807 9798 3.272574 TGAGAACTCCCTTCATGCATC 57.727 47.619 0.00 0.00 0.00 3.91
5808 9799 3.552875 CATGAGAACTCCCTTCATGCAT 58.447 45.455 0.00 0.00 33.03 3.96
5809 9800 2.356432 CCATGAGAACTCCCTTCATGCA 60.356 50.000 7.91 0.00 37.45 3.96
5810 9801 2.295885 CCATGAGAACTCCCTTCATGC 58.704 52.381 7.91 0.00 37.45 4.06
5811 9802 3.276857 CACCATGAGAACTCCCTTCATG 58.723 50.000 0.00 6.70 38.22 3.07
5812 9803 2.240667 CCACCATGAGAACTCCCTTCAT 59.759 50.000 0.00 0.00 0.00 2.57
5813 9804 1.630369 CCACCATGAGAACTCCCTTCA 59.370 52.381 0.00 0.00 0.00 3.02
5814 9805 1.909302 TCCACCATGAGAACTCCCTTC 59.091 52.381 0.00 0.00 0.00 3.46
5815 9806 1.912043 CTCCACCATGAGAACTCCCTT 59.088 52.381 0.00 0.00 34.11 3.95
5816 9807 1.079490 TCTCCACCATGAGAACTCCCT 59.921 52.381 0.00 0.00 38.41 4.20
5817 9808 1.208293 GTCTCCACCATGAGAACTCCC 59.792 57.143 0.00 0.00 42.75 4.30
5818 9809 2.093764 CAGTCTCCACCATGAGAACTCC 60.094 54.545 0.00 0.00 42.75 3.85
5819 9810 2.828520 TCAGTCTCCACCATGAGAACTC 59.171 50.000 0.00 0.00 42.75 3.01
5820 9811 2.894731 TCAGTCTCCACCATGAGAACT 58.105 47.619 0.00 0.00 42.75 3.01
5821 9812 3.007398 ACTTCAGTCTCCACCATGAGAAC 59.993 47.826 0.00 0.00 42.75 3.01
5822 9813 3.242867 ACTTCAGTCTCCACCATGAGAA 58.757 45.455 0.00 0.00 42.75 2.87
5823 9814 2.828520 GACTTCAGTCTCCACCATGAGA 59.171 50.000 0.00 0.00 41.65 3.27
5824 9815 3.244033 GACTTCAGTCTCCACCATGAG 57.756 52.381 0.00 0.00 41.65 2.90
5927 9918 4.034048 CGACGCATAGTAAGCTCCATTTTT 59.966 41.667 0.00 0.00 0.00 1.94
5928 9919 3.555956 CGACGCATAGTAAGCTCCATTTT 59.444 43.478 0.00 0.00 0.00 1.82
5929 9920 3.123804 CGACGCATAGTAAGCTCCATTT 58.876 45.455 0.00 0.00 0.00 2.32
5935 9926 1.067582 GGCCGACGCATAGTAAGCT 59.932 57.895 0.00 0.00 36.38 3.74
5938 9929 2.414179 CCGGCCGACGCATAGTAA 59.586 61.111 30.73 0.00 42.52 2.24
5988 9979 0.309302 CGAGCTCGTGATCCTACAGG 59.691 60.000 27.79 0.00 34.11 4.00
5990 9981 1.015109 GTCGAGCTCGTGATCCTACA 58.985 55.000 33.33 10.14 40.80 2.74
6000 9991 0.937699 TCAAACGGTTGTCGAGCTCG 60.938 55.000 30.03 30.03 42.43 5.03
6013 10004 1.128692 GCACGGGAAGAAGATCAAACG 59.871 52.381 0.00 0.00 0.00 3.60
6016 10007 2.237143 AGATGCACGGGAAGAAGATCAA 59.763 45.455 0.00 0.00 0.00 2.57
6037 10041 3.084039 CTCAGGCCTTGTTGCAAAGATA 58.916 45.455 0.00 0.00 0.00 1.98
6064 10068 3.637998 AACAATTCAGCAAGAGCACAG 57.362 42.857 0.00 0.00 45.49 3.66
6100 10104 6.931281 CAGAGGTCTTTTCTGAAACATAGTCA 59.069 38.462 1.58 0.00 43.75 3.41
6102 10106 6.831976 ACAGAGGTCTTTTCTGAAACATAGT 58.168 36.000 1.58 0.00 43.75 2.12
6160 10167 1.370900 GGAGCAAGCGCAACAGTTG 60.371 57.895 11.47 9.12 42.27 3.16
6161 10168 2.555547 GGGAGCAAGCGCAACAGTT 61.556 57.895 11.47 0.00 42.27 3.16
6162 10169 2.980233 GGGAGCAAGCGCAACAGT 60.980 61.111 11.47 0.00 42.27 3.55
6163 10170 2.670934 AGGGAGCAAGCGCAACAG 60.671 61.111 11.47 0.00 42.27 3.16
6169 10176 1.153549 GGTGTAGAGGGAGCAAGCG 60.154 63.158 0.00 0.00 0.00 4.68
6186 10193 6.500684 TTATTTCTGCAACTAGCTTCTTGG 57.499 37.500 0.00 0.00 45.94 3.61
6215 10226 1.577328 CGAACGCTGATTGCAAGGGT 61.577 55.000 4.94 2.71 43.06 4.34
6264 10275 0.431233 CGAGACGAGTTTCTGCAACG 59.569 55.000 0.00 0.00 40.75 4.10
6270 10281 0.664767 GTGCTGCGAGACGAGTTTCT 60.665 55.000 0.00 0.00 0.00 2.52
6310 10321 2.186350 TACCGCGTGTCGTTCATCGT 62.186 55.000 4.92 0.00 40.80 3.73
6322 10333 0.817229 GACCTACCTAGCTACCGCGT 60.817 60.000 4.92 0.00 42.32 6.01
6356 10367 2.125552 CGCTCGTTGCCTCATCCA 60.126 61.111 0.00 0.00 38.78 3.41
6379 10390 3.752339 GGTTCCGCCGTCTACCGT 61.752 66.667 0.00 0.00 33.66 4.83
6395 10406 2.543067 CTTGGGAAGAGGGGCGAAGG 62.543 65.000 0.00 0.00 0.00 3.46
6419 10430 8.564574 CCAAATCTAACTGTTACAAAACTGCTA 58.435 33.333 0.00 0.00 37.90 3.49
6422 10433 8.402472 TGACCAAATCTAACTGTTACAAAACTG 58.598 33.333 0.00 0.00 39.65 3.16
6430 10441 5.943416 CACCCATGACCAAATCTAACTGTTA 59.057 40.000 0.00 0.00 0.00 2.41
6436 10447 3.266772 AGAGCACCCATGACCAAATCTAA 59.733 43.478 0.00 0.00 0.00 2.10
6440 10451 1.637553 AGAGAGCACCCATGACCAAAT 59.362 47.619 0.00 0.00 0.00 2.32
6446 10457 2.106566 GAGAAGAGAGAGCACCCATGA 58.893 52.381 0.00 0.00 0.00 3.07
6474 10485 0.606401 CACGCACCCAAATCCTCTGT 60.606 55.000 0.00 0.00 0.00 3.41
6487 10498 1.130561 GTAAATCCCTCAAGCACGCAC 59.869 52.381 0.00 0.00 0.00 5.34
6498 10509 1.206371 CTTCCACGGACGTAAATCCCT 59.794 52.381 0.00 0.00 35.03 4.20
6512 10523 3.404773 CCTCCAGGTCCCTTCCAC 58.595 66.667 0.00 0.00 0.00 4.02
6561 10572 4.739046 ATCTCAAACGAAAAGAGCACAG 57.261 40.909 0.00 0.00 0.00 3.66
6579 10590 9.844257 CACTCTCCCATTCTTATTTTCTTATCT 57.156 33.333 0.00 0.00 0.00 1.98
6588 10599 5.256474 CACAACCACTCTCCCATTCTTATT 58.744 41.667 0.00 0.00 0.00 1.40
6620 10631 0.874390 ATTGTGCGTCACATGTCCAC 59.126 50.000 12.33 2.00 44.16 4.02
6622 10633 1.535028 TCAATTGTGCGTCACATGTCC 59.465 47.619 12.33 0.00 44.16 4.02
6624 10635 2.095110 CCATCAATTGTGCGTCACATGT 60.095 45.455 12.33 0.00 44.16 3.21
6627 10638 1.889545 TCCATCAATTGTGCGTCACA 58.110 45.000 5.13 8.32 43.02 3.58
6631 10642 2.445427 TCCATTCCATCAATTGTGCGT 58.555 42.857 5.13 0.00 0.00 5.24
6638 10649 5.180271 GTGTTGCAAATCCATTCCATCAAT 58.820 37.500 0.00 0.00 0.00 2.57
6640 10651 3.577415 TGTGTTGCAAATCCATTCCATCA 59.423 39.130 0.00 0.00 0.00 3.07
6642 10653 3.579586 ACTGTGTTGCAAATCCATTCCAT 59.420 39.130 0.00 0.00 0.00 3.41
6643 10654 2.964464 ACTGTGTTGCAAATCCATTCCA 59.036 40.909 0.00 0.00 0.00 3.53
6644 10655 3.319755 CACTGTGTTGCAAATCCATTCC 58.680 45.455 0.00 0.00 0.00 3.01
6645 10656 2.733026 GCACTGTGTTGCAAATCCATTC 59.267 45.455 9.86 0.00 42.49 2.67
6646 10657 2.758009 GCACTGTGTTGCAAATCCATT 58.242 42.857 9.86 0.00 42.49 3.16
6647 10658 1.336148 CGCACTGTGTTGCAAATCCAT 60.336 47.619 9.86 0.00 43.15 3.41
6648 10659 0.030504 CGCACTGTGTTGCAAATCCA 59.969 50.000 9.86 0.00 43.15 3.41
6651 10662 3.255017 CACGCACTGTGTTGCAAAT 57.745 47.368 9.86 0.00 43.15 2.32
6687 10698 2.573083 AACATGCCCTTGTTGCGGG 61.573 57.895 0.00 0.00 44.89 6.13
6689 10700 4.248402 CAACATGCCCTTGTTGCG 57.752 55.556 12.22 0.00 46.95 4.85
6694 10705 0.034337 AGCTTTGCAACATGCCCTTG 59.966 50.000 0.00 0.00 44.23 3.61
6696 10707 0.828762 TGAGCTTTGCAACATGCCCT 60.829 50.000 0.00 0.00 44.23 5.19
6697 10708 0.248289 ATGAGCTTTGCAACATGCCC 59.752 50.000 0.00 0.00 44.23 5.36
6698 10709 1.355971 CATGAGCTTTGCAACATGCC 58.644 50.000 13.00 7.10 44.23 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.