Multiple sequence alignment - TraesCS4D01G023800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G023800 chr4D 100.000 6112 0 0 1 6112 10276044 10269933 0.000000e+00 11287.0
1 TraesCS4D01G023800 chr4D 78.400 250 29 12 3817 4053 10272086 10271849 8.260000e-29 139.0
2 TraesCS4D01G023800 chr4D 82.143 112 17 3 1 111 102383087 102382978 6.520000e-15 93.5
3 TraesCS4D01G023800 chr4D 81.250 112 18 3 1 111 29425474 29425365 3.030000e-13 87.9
4 TraesCS4D01G023800 chr4B 95.534 2620 79 18 1604 4198 19758618 19756012 0.000000e+00 4156.0
5 TraesCS4D01G023800 chr4B 92.292 1907 98 31 3817 5691 19756260 19754371 0.000000e+00 2662.0
6 TraesCS4D01G023800 chr4B 87.736 848 51 24 774 1575 19759566 19758726 0.000000e+00 941.0
7 TraesCS4D01G023800 chr4B 96.907 97 2 1 1549 1645 610796188 610796093 1.760000e-35 161.0
8 TraesCS4D01G023800 chr4B 95.146 103 2 3 1545 1646 567976039 567976139 6.340000e-35 159.0
9 TraesCS4D01G023800 chr4A 95.596 2611 77 18 1604 4196 593333902 593336492 0.000000e+00 4150.0
10 TraesCS4D01G023800 chr4A 92.798 2055 87 33 3817 5841 593336250 593338273 0.000000e+00 2918.0
11 TraesCS4D01G023800 chr4A 89.696 854 38 27 747 1562 593332935 593333776 0.000000e+00 1044.0
12 TraesCS4D01G023800 chr5D 89.127 653 39 14 1 622 442919547 442920198 0.000000e+00 784.0
13 TraesCS4D01G023800 chr5D 95.098 102 4 1 1542 1642 401281227 401281328 6.340000e-35 159.0
14 TraesCS4D01G023800 chr7D 97.917 96 2 0 1543 1638 342585377 342585472 3.790000e-37 167.0
15 TraesCS4D01G023800 chr7D 95.238 105 3 2 1548 1650 481573751 481573855 1.360000e-36 165.0
16 TraesCS4D01G023800 chr7D 82.143 112 16 3 1 111 530077756 530077864 6.520000e-15 93.5
17 TraesCS4D01G023800 chr7D 79.825 114 16 4 1 111 588173957 588174066 6.570000e-10 76.8
18 TraesCS4D01G023800 chr7D 82.143 84 11 4 283 363 3183982 3183900 1.100000e-07 69.4
19 TraesCS4D01G023800 chr7D 97.436 39 1 0 1 39 579085473 579085435 3.950000e-07 67.6
20 TraesCS4D01G023800 chr7D 90.000 50 4 1 315 363 596066788 596066739 5.110000e-06 63.9
21 TraesCS4D01G023800 chr1B 95.192 104 3 2 1540 1642 636840167 636840269 4.900000e-36 163.0
22 TraesCS4D01G023800 chr2B 96.000 100 3 1 1546 1644 483512883 483512982 1.760000e-35 161.0
23 TraesCS4D01G023800 chr6D 95.918 98 3 1 1539 1636 6507768 6507672 2.280000e-34 158.0
24 TraesCS4D01G023800 chr6D 93.204 103 7 0 1547 1649 248004090 248003988 1.060000e-32 152.0
25 TraesCS4D01G023800 chr6D 81.250 112 18 3 1 111 76017836 76017727 3.030000e-13 87.9
26 TraesCS4D01G023800 chr3A 89.189 111 9 3 1527 1635 686127560 686127451 1.070000e-27 135.0
27 TraesCS4D01G023800 chr3A 97.222 36 1 0 209 244 745478524 745478559 1.840000e-05 62.1
28 TraesCS4D01G023800 chr3D 84.071 113 12 4 1 111 404436921 404436813 3.010000e-18 104.0
29 TraesCS4D01G023800 chr1D 81.250 112 18 3 1 111 275718119 275718228 3.030000e-13 87.9
30 TraesCS4D01G023800 chr1D 82.353 85 8 5 283 363 406667750 406667669 3.950000e-07 67.6
31 TraesCS4D01G023800 chr1D 87.037 54 5 1 312 363 27593825 27593772 6.620000e-05 60.2
32 TraesCS4D01G023800 chr7A 84.524 84 8 5 283 363 289172620 289172539 1.830000e-10 78.7
33 TraesCS4D01G023800 chr7B 81.188 101 14 5 265 363 484462513 484462610 6.570000e-10 76.8
34 TraesCS4D01G023800 chr3B 81.373 102 12 7 265 363 31412646 31412743 6.570000e-10 76.8
35 TraesCS4D01G023800 chr5B 83.333 84 10 4 283 363 70694037 70694119 2.360000e-09 75.0
36 TraesCS4D01G023800 chr1A 94.737 38 2 0 5841 5878 122498523 122498560 6.620000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G023800 chr4D 10269933 10276044 6111 True 11287.000000 11287 100.000000 1 6112 1 chr4D.!!$R1 6111
1 TraesCS4D01G023800 chr4B 19754371 19759566 5195 True 2586.333333 4156 91.854000 774 5691 3 chr4B.!!$R2 4917
2 TraesCS4D01G023800 chr4A 593332935 593338273 5338 False 2704.000000 4150 92.696667 747 5841 3 chr4A.!!$F1 5094
3 TraesCS4D01G023800 chr5D 442919547 442920198 651 False 784.000000 784 89.127000 1 622 1 chr5D.!!$F2 621

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
678 710 0.037590 CCAAACCCGGTGGAGATGAA 59.962 55.000 3.44 0.00 38.54 2.57 F
724 756 0.462403 TTTAGGATGGGGTTACGCGC 60.462 55.000 5.73 0.00 0.00 6.86 F
1954 2131 1.009675 GTCGTGCTGGTGCTGTTTG 60.010 57.895 0.00 0.00 40.48 2.93 F
3414 3608 0.741915 TTTGTTTGCCCGACTGGTTC 59.258 50.000 0.00 0.00 36.04 3.62 F
4209 4557 1.113788 TCAAAGGTTTTGCAGCTGCT 58.886 45.000 36.61 15.23 42.66 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2210 2393 0.601046 CTGTCTGTTGAGCCGCTTCA 60.601 55.000 0.00 0.00 0.00 3.02 R
2556 2741 7.519927 TGATGAGATAAATGATTGGGACATGA 58.480 34.615 0.00 0.00 39.30 3.07 R
3740 3934 1.559219 TGCAGGTCTATAGCAGCCAAA 59.441 47.619 0.00 0.00 34.98 3.28 R
4799 5147 0.108186 CATAACGGTCTGGAGCTGCA 60.108 55.000 7.99 7.99 0.00 4.41 R
5974 6351 0.036388 GGCGTCTGAATCACAGGGAA 60.036 55.000 0.00 0.00 45.76 3.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 9.377383 CTAACATAATTTAATTAAGGCGGTTCG 57.623 33.333 1.28 0.00 0.00 3.95
53 54 2.243602 TTAAGGCGGTTCGTCTGTTT 57.756 45.000 0.00 0.00 42.48 2.83
59 60 2.334838 GCGGTTCGTCTGTTTGACTAT 58.665 47.619 0.00 0.00 43.25 2.12
60 61 2.735134 GCGGTTCGTCTGTTTGACTATT 59.265 45.455 0.00 0.00 43.25 1.73
61 62 3.185797 GCGGTTCGTCTGTTTGACTATTT 59.814 43.478 0.00 0.00 43.25 1.40
62 63 4.319261 GCGGTTCGTCTGTTTGACTATTTT 60.319 41.667 0.00 0.00 43.25 1.82
63 64 5.744490 CGGTTCGTCTGTTTGACTATTTTT 58.256 37.500 0.00 0.00 43.25 1.94
172 175 0.453793 CCGTGTTGACTGGCAAAACA 59.546 50.000 16.46 0.31 43.60 2.83
173 176 1.544686 CGTGTTGACTGGCAAAACAC 58.455 50.000 16.46 21.51 43.60 3.32
184 187 0.996727 GCAAAACACGTCATGACCGC 60.997 55.000 20.03 7.67 0.00 5.68
190 193 3.545481 CGTCATGACCGCGCTGTC 61.545 66.667 23.20 23.20 35.77 3.51
245 273 5.869579 TCTGCTAAATCTGAAACTTGACCT 58.130 37.500 0.00 0.00 0.00 3.85
328 356 4.845307 CCCTTCCCCTCCCCTCCC 62.845 77.778 0.00 0.00 0.00 4.30
424 456 2.436115 GCTTGGTGGCGGGTCTAC 60.436 66.667 0.00 0.00 0.00 2.59
433 465 2.202570 CGGGTCTACGTGGCGAAG 60.203 66.667 0.00 0.00 0.00 3.79
473 505 1.745489 GCGATGGTGGTGGAGTTCC 60.745 63.158 0.00 0.00 0.00 3.62
474 506 1.676968 CGATGGTGGTGGAGTTCCA 59.323 57.895 0.00 0.00 45.30 3.53
496 528 2.915659 TCGTGTGGCGGTCTCCTT 60.916 61.111 0.00 0.00 41.72 3.36
504 536 4.772231 CGGTCTCCTTCCCCGGGA 62.772 72.222 26.32 0.34 38.09 5.14
555 587 1.302993 GCCCTTGGCTTTGGTACGA 60.303 57.895 0.00 0.00 46.69 3.43
580 612 2.338015 CGCATCATGCTATGGGGGC 61.338 63.158 8.30 0.00 42.25 5.80
624 656 2.281484 GGAGGTGCCAACTGCGAA 60.281 61.111 0.00 0.00 45.60 4.70
625 657 1.896660 GGAGGTGCCAACTGCGAAA 60.897 57.895 0.00 0.00 45.60 3.46
626 658 1.452145 GGAGGTGCCAACTGCGAAAA 61.452 55.000 0.00 0.00 45.60 2.29
627 659 0.383949 GAGGTGCCAACTGCGAAAAA 59.616 50.000 0.00 0.00 45.60 1.94
628 660 0.385390 AGGTGCCAACTGCGAAAAAG 59.615 50.000 0.00 0.00 45.60 2.27
629 661 0.383949 GGTGCCAACTGCGAAAAAGA 59.616 50.000 0.00 0.00 45.60 2.52
630 662 1.202359 GGTGCCAACTGCGAAAAAGAA 60.202 47.619 0.00 0.00 45.60 2.52
631 663 1.852280 GTGCCAACTGCGAAAAAGAAC 59.148 47.619 0.00 0.00 45.60 3.01
632 664 1.202359 TGCCAACTGCGAAAAAGAACC 60.202 47.619 0.00 0.00 45.60 3.62
633 665 1.753956 CCAACTGCGAAAAAGAACCG 58.246 50.000 0.00 0.00 0.00 4.44
638 670 3.837669 GCGAAAAAGAACCGCTTCA 57.162 47.368 0.00 0.00 44.83 3.02
639 671 1.674908 GCGAAAAAGAACCGCTTCAG 58.325 50.000 0.00 0.00 44.83 3.02
640 672 1.663161 GCGAAAAAGAACCGCTTCAGG 60.663 52.381 0.00 0.00 44.83 3.86
641 673 1.871039 CGAAAAAGAACCGCTTCAGGA 59.129 47.619 0.00 0.00 35.24 3.86
642 674 2.289547 CGAAAAAGAACCGCTTCAGGAA 59.710 45.455 0.00 0.00 35.24 3.36
643 675 3.242936 CGAAAAAGAACCGCTTCAGGAAA 60.243 43.478 0.00 0.00 35.24 3.13
644 676 3.990318 AAAAGAACCGCTTCAGGAAAG 57.010 42.857 0.00 0.00 35.24 2.62
645 677 1.897560 AAGAACCGCTTCAGGAAAGG 58.102 50.000 0.00 2.75 35.37 3.11
646 678 0.765510 AGAACCGCTTCAGGAAAGGT 59.234 50.000 3.80 3.80 35.37 3.50
647 679 1.143073 AGAACCGCTTCAGGAAAGGTT 59.857 47.619 16.51 16.51 41.15 3.50
648 680 1.535896 GAACCGCTTCAGGAAAGGTTC 59.464 52.381 22.12 22.12 43.78 3.62
649 681 0.765510 ACCGCTTCAGGAAAGGTTCT 59.234 50.000 3.80 0.00 35.37 3.01
650 682 1.975680 ACCGCTTCAGGAAAGGTTCTA 59.024 47.619 3.80 0.00 35.37 2.10
651 683 2.028020 ACCGCTTCAGGAAAGGTTCTAG 60.028 50.000 3.80 0.00 35.37 2.43
652 684 2.233922 CCGCTTCAGGAAAGGTTCTAGA 59.766 50.000 0.00 0.00 35.37 2.43
653 685 3.306780 CCGCTTCAGGAAAGGTTCTAGAA 60.307 47.826 0.00 0.00 35.37 2.10
654 686 3.680458 CGCTTCAGGAAAGGTTCTAGAAC 59.320 47.826 24.73 24.73 40.45 3.01
655 687 4.561734 CGCTTCAGGAAAGGTTCTAGAACT 60.562 45.833 29.66 14.47 40.94 3.01
656 688 5.309638 GCTTCAGGAAAGGTTCTAGAACTT 58.690 41.667 29.66 22.59 40.94 2.66
657 689 5.765677 GCTTCAGGAAAGGTTCTAGAACTTT 59.234 40.000 29.66 26.46 41.49 2.66
658 690 6.072948 GCTTCAGGAAAGGTTCTAGAACTTTC 60.073 42.308 29.27 29.27 39.28 2.62
659 691 5.866207 TCAGGAAAGGTTCTAGAACTTTCC 58.134 41.667 36.50 36.50 45.70 3.13
660 692 5.004448 CAGGAAAGGTTCTAGAACTTTCCC 58.996 45.833 37.67 32.41 46.02 3.97
661 693 4.663592 AGGAAAGGTTCTAGAACTTTCCCA 59.336 41.667 37.67 11.98 46.02 4.37
662 694 5.133830 AGGAAAGGTTCTAGAACTTTCCCAA 59.866 40.000 37.67 11.44 46.02 4.12
663 695 5.831525 GGAAAGGTTCTAGAACTTTCCCAAA 59.168 40.000 35.34 8.23 43.34 3.28
664 696 6.238953 GGAAAGGTTCTAGAACTTTCCCAAAC 60.239 42.308 35.34 24.20 43.34 2.93
665 697 4.726583 AGGTTCTAGAACTTTCCCAAACC 58.273 43.478 29.66 13.87 40.94 3.27
666 698 3.825014 GGTTCTAGAACTTTCCCAAACCC 59.175 47.826 29.66 9.58 40.94 4.11
667 699 3.412237 TCTAGAACTTTCCCAAACCCG 57.588 47.619 0.00 0.00 0.00 5.28
668 700 2.039348 TCTAGAACTTTCCCAAACCCGG 59.961 50.000 0.00 0.00 0.00 5.73
669 701 0.554305 AGAACTTTCCCAAACCCGGT 59.446 50.000 0.00 0.00 0.00 5.28
670 702 0.671796 GAACTTTCCCAAACCCGGTG 59.328 55.000 0.00 0.00 0.00 4.94
671 703 0.757561 AACTTTCCCAAACCCGGTGG 60.758 55.000 0.00 0.67 35.77 4.61
672 704 1.151908 CTTTCCCAAACCCGGTGGA 59.848 57.895 11.09 0.73 38.54 4.02
673 705 0.893727 CTTTCCCAAACCCGGTGGAG 60.894 60.000 11.09 2.04 38.54 3.86
674 706 1.354168 TTTCCCAAACCCGGTGGAGA 61.354 55.000 11.09 4.27 38.54 3.71
675 707 1.137594 TTCCCAAACCCGGTGGAGAT 61.138 55.000 11.09 0.00 38.54 2.75
676 708 1.378514 CCCAAACCCGGTGGAGATG 60.379 63.158 11.09 0.00 38.54 2.90
677 709 1.682849 CCAAACCCGGTGGAGATGA 59.317 57.895 3.44 0.00 38.54 2.92
678 710 0.037590 CCAAACCCGGTGGAGATGAA 59.962 55.000 3.44 0.00 38.54 2.57
679 711 1.546773 CCAAACCCGGTGGAGATGAAA 60.547 52.381 3.44 0.00 38.54 2.69
680 712 2.446435 CAAACCCGGTGGAGATGAAAT 58.554 47.619 0.00 0.00 34.81 2.17
681 713 2.420058 AACCCGGTGGAGATGAAATC 57.580 50.000 0.00 0.00 38.33 2.17
682 714 0.546598 ACCCGGTGGAGATGAAATCC 59.453 55.000 0.00 0.00 38.67 3.01
683 715 3.186554 ACCCGGTGGAGATGAAATCCG 62.187 57.143 0.00 0.00 38.67 4.18
694 726 2.286365 TGAAATCCGGATAATGGGCC 57.714 50.000 19.48 0.00 0.00 5.80
695 727 1.165270 GAAATCCGGATAATGGGCCG 58.835 55.000 19.48 0.00 46.80 6.13
708 740 4.449568 GGCCGGCCCGTACGTTTA 62.450 66.667 36.64 0.00 0.00 2.01
709 741 2.887086 GCCGGCCCGTACGTTTAG 60.887 66.667 18.11 2.91 0.00 1.85
710 742 2.202783 CCGGCCCGTACGTTTAGG 60.203 66.667 15.21 9.21 0.00 2.69
711 743 2.709883 CCGGCCCGTACGTTTAGGA 61.710 63.158 15.21 0.00 0.00 2.94
712 744 1.438814 CGGCCCGTACGTTTAGGAT 59.561 57.895 15.21 0.00 0.00 3.24
713 745 0.872881 CGGCCCGTACGTTTAGGATG 60.873 60.000 15.21 0.65 0.00 3.51
714 746 0.531311 GGCCCGTACGTTTAGGATGG 60.531 60.000 15.21 6.54 39.71 3.51
716 748 3.673173 CCGTACGTTTAGGATGGGG 57.327 57.895 15.21 0.00 36.13 4.96
717 749 0.826062 CCGTACGTTTAGGATGGGGT 59.174 55.000 15.21 0.00 36.13 4.95
718 750 1.207811 CCGTACGTTTAGGATGGGGTT 59.792 52.381 15.21 0.00 36.13 4.11
719 751 2.430332 CCGTACGTTTAGGATGGGGTTA 59.570 50.000 15.21 0.00 36.13 2.85
720 752 3.447742 CGTACGTTTAGGATGGGGTTAC 58.552 50.000 7.22 0.00 0.00 2.50
721 753 2.678471 ACGTTTAGGATGGGGTTACG 57.322 50.000 0.00 0.00 0.00 3.18
722 754 1.292992 CGTTTAGGATGGGGTTACGC 58.707 55.000 0.00 0.00 0.00 4.42
723 755 1.292992 GTTTAGGATGGGGTTACGCG 58.707 55.000 3.53 3.53 0.00 6.01
724 756 0.462403 TTTAGGATGGGGTTACGCGC 60.462 55.000 5.73 0.00 0.00 6.86
725 757 2.632136 TTAGGATGGGGTTACGCGCG 62.632 60.000 30.96 30.96 0.00 6.86
726 758 4.517815 GGATGGGGTTACGCGCGA 62.518 66.667 39.36 17.83 0.00 5.87
727 759 2.960129 GATGGGGTTACGCGCGAG 60.960 66.667 39.36 10.29 0.00 5.03
877 918 2.045340 CCACCCAAACCCTAGCGG 60.045 66.667 0.00 0.00 37.81 5.52
1171 1232 1.339235 CGCATGCTTTCGCTTGTTGG 61.339 55.000 17.13 0.00 41.78 3.77
1262 1346 1.627297 GGAGGCCAAGGTCTAGGTGG 61.627 65.000 5.01 0.00 35.39 4.61
1327 1413 2.688446 TCCTGCTACCTTCATCAGTACG 59.312 50.000 0.00 0.00 0.00 3.67
1402 1488 1.480137 CACTGGCTCAGTTCTCTAGGG 59.520 57.143 5.24 0.00 42.59 3.53
1412 1501 7.204604 GCTCAGTTCTCTAGGGTTAATACTTC 58.795 42.308 0.00 0.00 0.00 3.01
1425 1514 5.298527 GGTTAATACTTCACAGTAATGGGGC 59.701 44.000 0.00 0.00 39.05 5.80
1489 1580 8.334632 GTCTTACGAAGTTACAGAGGTAGTATC 58.665 40.741 0.00 0.00 37.78 2.24
1562 1653 7.778853 CAGGTTCTAATTAGTACTCCCTCTGTA 59.221 40.741 18.29 0.00 0.00 2.74
1563 1654 8.342270 AGGTTCTAATTAGTACTCCCTCTGTAA 58.658 37.037 18.29 0.00 0.00 2.41
1564 1655 8.975295 GGTTCTAATTAGTACTCCCTCTGTAAA 58.025 37.037 18.29 0.00 0.00 2.01
1565 1656 9.800433 GTTCTAATTAGTACTCCCTCTGTAAAC 57.200 37.037 12.19 1.16 0.00 2.01
1577 1668 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
1578 1669 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
1579 1670 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
1581 1672 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
1596 1687 9.953697 ATAAGAGCGTTTAGATCACTACTTTAG 57.046 33.333 0.00 0.00 37.82 1.85
1597 1688 7.393841 AGAGCGTTTAGATCACTACTTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
1598 1689 8.503458 AGAGCGTTTAGATCACTACTTTAGTA 57.497 34.615 0.00 0.00 37.82 1.82
1599 1690 9.122779 AGAGCGTTTAGATCACTACTTTAGTAT 57.877 33.333 0.00 0.00 37.82 2.12
1601 1692 9.733219 AGCGTTTAGATCACTACTTTAGTATTC 57.267 33.333 0.00 0.00 37.23 1.75
1602 1693 9.733219 GCGTTTAGATCACTACTTTAGTATTCT 57.267 33.333 0.00 0.00 37.23 2.40
1608 1699 9.733219 AGATCACTACTTTAGTATTCTAAACGC 57.267 33.333 0.76 0.00 40.05 4.84
1610 1701 9.733219 ATCACTACTTTAGTATTCTAAACGCTC 57.267 33.333 0.76 0.00 40.05 5.03
1611 1702 8.954350 TCACTACTTTAGTATTCTAAACGCTCT 58.046 33.333 0.76 0.00 40.05 4.09
1612 1703 9.570488 CACTACTTTAGTATTCTAAACGCTCTT 57.430 33.333 0.76 0.00 40.05 2.85
1693 1870 4.530553 TCCTTAGTTTGTAGCCACATCAGA 59.469 41.667 0.00 0.00 33.76 3.27
1715 1892 7.663081 TCAGAAATGCTCACAGTATTTTTCTCT 59.337 33.333 1.76 0.00 39.94 3.10
1851 2028 3.062369 CGAAAGATCAGCTTTGCAGAGAG 59.938 47.826 8.73 0.00 46.52 3.20
1954 2131 1.009675 GTCGTGCTGGTGCTGTTTG 60.010 57.895 0.00 0.00 40.48 2.93
1957 2134 2.441717 TGCTGGTGCTGTTTGCCA 60.442 55.556 0.00 0.00 42.00 4.92
2210 2393 2.695666 ACAGTCAGTAGTCTGCAGTTGT 59.304 45.455 14.67 1.95 41.10 3.32
2341 2525 3.241701 GTCTGTTTTGTGTGGTTGTGTG 58.758 45.455 0.00 0.00 0.00 3.82
2404 2588 5.221521 TGCCATCTATGCGACTAGAATTCTT 60.222 40.000 14.36 0.00 31.75 2.52
2759 2946 3.891366 AGCCAATAAATCATGTGGTAGCC 59.109 43.478 0.00 0.00 33.43 3.93
3088 3275 3.351740 TGTTCTTGTTTGGCTTCTGACA 58.648 40.909 0.00 0.00 0.00 3.58
3089 3276 3.378112 TGTTCTTGTTTGGCTTCTGACAG 59.622 43.478 0.00 0.00 29.87 3.51
3277 3469 6.590292 TCAGTTAGTAGTTGCTGCAATTAGTC 59.410 38.462 23.16 13.32 0.00 2.59
3414 3608 0.741915 TTTGTTTGCCCGACTGGTTC 59.258 50.000 0.00 0.00 36.04 3.62
3584 3778 6.542821 TCTGTCAACCATCCTAAATTTGACT 58.457 36.000 12.53 0.00 44.18 3.41
3589 3783 8.021396 GTCAACCATCCTAAATTTGACTACAAC 58.979 37.037 0.00 0.00 41.78 3.32
3782 3976 5.140177 CAGCTGTTTGTAGTGATTCGTTTC 58.860 41.667 5.25 0.00 0.00 2.78
3923 4117 7.807687 TTACTAGTCGCTGAATTCAAAGTAC 57.192 36.000 9.88 5.80 0.00 2.73
3924 4118 5.169295 ACTAGTCGCTGAATTCAAAGTACC 58.831 41.667 9.88 0.00 0.00 3.34
3925 4119 4.002906 AGTCGCTGAATTCAAAGTACCA 57.997 40.909 9.88 0.00 0.00 3.25
3926 4120 3.997021 AGTCGCTGAATTCAAAGTACCAG 59.003 43.478 9.88 0.00 0.00 4.00
3927 4121 3.746492 GTCGCTGAATTCAAAGTACCAGT 59.254 43.478 9.88 0.00 0.00 4.00
3928 4122 4.213482 GTCGCTGAATTCAAAGTACCAGTT 59.787 41.667 9.88 0.00 0.00 3.16
3929 4123 4.819630 TCGCTGAATTCAAAGTACCAGTTT 59.180 37.500 9.88 0.00 0.00 2.66
4120 4468 7.624344 GCCACAGTATCAAACAAACTATGACTC 60.624 40.741 0.00 0.00 0.00 3.36
4124 4472 7.065085 CAGTATCAAACAAACTATGACTCTGGG 59.935 40.741 0.00 0.00 0.00 4.45
4209 4557 1.113788 TCAAAGGTTTTGCAGCTGCT 58.886 45.000 36.61 15.23 42.66 4.24
4727 5075 4.645762 TGACAGCAGAGACAGATATGAC 57.354 45.455 0.00 0.00 0.00 3.06
4799 5147 1.064003 TTGGTGCAGACAGGTATGGT 58.936 50.000 0.00 0.00 0.00 3.55
4838 5186 3.250847 CCAAGTGGTGGTGGAGGT 58.749 61.111 0.00 0.00 43.20 3.85
5108 5459 2.024305 CGCTTCGACGACCGCTAT 59.976 61.111 14.18 0.00 38.37 2.97
5237 5593 3.681593 TGTACTGCAAATGTTACTCCCC 58.318 45.455 0.00 0.00 0.00 4.81
5281 5637 0.034059 AGACTGTTTCCGTGCTGAGG 59.966 55.000 0.00 0.00 0.00 3.86
5282 5638 0.951040 GACTGTTTCCGTGCTGAGGG 60.951 60.000 0.00 0.00 0.00 4.30
5380 5743 5.188434 TCTGAACTTATGAAATCCTGCTGG 58.812 41.667 2.58 2.58 0.00 4.85
5397 5760 0.840617 TGGTCTGCTGTGGTTGGTAA 59.159 50.000 0.00 0.00 0.00 2.85
5417 5780 1.836166 AGAAATCCTGCTGCTCTGCTA 59.164 47.619 0.00 0.00 0.00 3.49
5482 5845 2.925724 TGGTACCACAACTGGAGTTTG 58.074 47.619 11.60 0.00 40.55 2.93
5617 5987 3.983741 ACTTCGAGAAGAGTGACCAAAG 58.016 45.455 18.54 0.00 40.79 2.77
5699 6069 8.330466 TCATCACGTGTTATTTAGGTCATTTT 57.670 30.769 16.51 0.00 0.00 1.82
5700 6070 8.233868 TCATCACGTGTTATTTAGGTCATTTTG 58.766 33.333 16.51 0.00 0.00 2.44
5701 6071 7.499321 TCACGTGTTATTTAGGTCATTTTGT 57.501 32.000 16.51 0.00 0.00 2.83
5702 6072 7.356540 TCACGTGTTATTTAGGTCATTTTGTG 58.643 34.615 16.51 0.00 0.00 3.33
5703 6073 6.087555 CACGTGTTATTTAGGTCATTTTGTGC 59.912 38.462 7.58 0.00 0.00 4.57
5704 6074 6.016610 ACGTGTTATTTAGGTCATTTTGTGCT 60.017 34.615 0.00 0.00 0.00 4.40
5705 6075 6.305399 CGTGTTATTTAGGTCATTTTGTGCTG 59.695 38.462 0.00 0.00 0.00 4.41
5706 6076 7.367285 GTGTTATTTAGGTCATTTTGTGCTGA 58.633 34.615 0.00 0.00 0.00 4.26
5707 6077 7.326063 GTGTTATTTAGGTCATTTTGTGCTGAC 59.674 37.037 0.00 0.00 40.82 3.51
5708 6078 7.230510 TGTTATTTAGGTCATTTTGTGCTGACT 59.769 33.333 2.08 0.00 41.21 3.41
5709 6079 5.437289 TTTAGGTCATTTTGTGCTGACTG 57.563 39.130 2.08 0.00 41.21 3.51
5710 6080 2.233271 AGGTCATTTTGTGCTGACTGG 58.767 47.619 2.08 0.00 41.21 4.00
5711 6081 1.270550 GGTCATTTTGTGCTGACTGGG 59.729 52.381 2.08 0.00 41.21 4.45
5712 6082 1.956477 GTCATTTTGTGCTGACTGGGT 59.044 47.619 0.00 0.00 38.94 4.51
5714 6084 3.758554 GTCATTTTGTGCTGACTGGGTAT 59.241 43.478 0.00 0.00 38.94 2.73
5715 6085 3.758023 TCATTTTGTGCTGACTGGGTATG 59.242 43.478 0.00 0.00 0.00 2.39
5716 6086 3.500448 TTTTGTGCTGACTGGGTATGA 57.500 42.857 0.00 0.00 0.00 2.15
5717 6087 2.768253 TTGTGCTGACTGGGTATGAG 57.232 50.000 0.00 0.00 0.00 2.90
5727 6097 5.428253 TGACTGGGTATGAGTTAGAAATGC 58.572 41.667 0.00 0.00 0.00 3.56
5729 6099 5.431765 ACTGGGTATGAGTTAGAAATGCAG 58.568 41.667 0.00 0.00 0.00 4.41
5757 6127 9.945904 ATAAGTTTTTGTTTTTGTTTAGTCCCA 57.054 25.926 0.00 0.00 0.00 4.37
5759 6129 8.856153 AGTTTTTGTTTTTGTTTAGTCCCATT 57.144 26.923 0.00 0.00 0.00 3.16
5760 6130 8.941977 AGTTTTTGTTTTTGTTTAGTCCCATTC 58.058 29.630 0.00 0.00 0.00 2.67
5765 6135 7.841956 TGTTTTTGTTTAGTCCCATTCTTTCA 58.158 30.769 0.00 0.00 0.00 2.69
5769 6139 7.979444 TTGTTTAGTCCCATTCTTTCAGTAG 57.021 36.000 0.00 0.00 0.00 2.57
5772 6142 7.660208 TGTTTAGTCCCATTCTTTCAGTAGAAC 59.340 37.037 0.00 0.00 37.00 3.01
5774 6144 6.043854 AGTCCCATTCTTTCAGTAGAACTC 57.956 41.667 0.00 0.00 37.00 3.01
5789 6159 5.701290 AGTAGAACTCCTGTGCAAAATGTAC 59.299 40.000 0.00 0.00 33.42 2.90
5791 6161 4.757149 AGAACTCCTGTGCAAAATGTACTC 59.243 41.667 0.00 0.00 33.97 2.59
5799 6169 3.493129 GTGCAAAATGTACTCGAGTGTCA 59.507 43.478 28.12 24.09 30.04 3.58
5800 6170 3.740832 TGCAAAATGTACTCGAGTGTCAG 59.259 43.478 28.12 14.42 0.00 3.51
5802 6172 3.660501 AAATGTACTCGAGTGTCAGCA 57.339 42.857 28.12 17.23 0.00 4.41
5824 6201 6.586844 AGCACGAAGAATACAAACTTACTCTC 59.413 38.462 0.00 0.00 0.00 3.20
5845 6222 9.512588 ACTCTCTGATTCAACATATTTGAAGTT 57.487 29.630 14.26 4.09 41.13 2.66
5846 6223 9.770503 CTCTCTGATTCAACATATTTGAAGTTG 57.229 33.333 14.26 0.00 41.13 3.16
5847 6224 9.288576 TCTCTGATTCAACATATTTGAAGTTGT 57.711 29.630 14.26 3.36 41.13 3.32
5850 6227 9.265938 CTGATTCAACATATTTGAAGTTGTACG 57.734 33.333 14.26 0.00 41.13 3.67
5851 6228 8.779303 TGATTCAACATATTTGAAGTTGTACGT 58.221 29.630 14.26 0.00 41.13 3.57
5852 6229 9.607285 GATTCAACATATTTGAAGTTGTACGTT 57.393 29.630 14.26 0.00 41.13 3.99
5853 6230 9.959749 ATTCAACATATTTGAAGTTGTACGTTT 57.040 25.926 14.26 0.00 41.13 3.60
5854 6231 8.775220 TCAACATATTTGAAGTTGTACGTTTG 57.225 30.769 0.00 0.00 42.33 2.93
5855 6232 8.399425 TCAACATATTTGAAGTTGTACGTTTGT 58.601 29.630 0.00 0.00 42.33 2.83
5856 6233 8.678510 CAACATATTTGAAGTTGTACGTTTGTC 58.321 33.333 0.00 0.00 38.20 3.18
5857 6234 7.357303 ACATATTTGAAGTTGTACGTTTGTCC 58.643 34.615 0.00 0.00 0.00 4.02
5858 6235 4.619437 TTTGAAGTTGTACGTTTGTCCC 57.381 40.909 0.00 0.00 0.00 4.46
5859 6236 3.263489 TGAAGTTGTACGTTTGTCCCA 57.737 42.857 0.00 0.00 0.00 4.37
5860 6237 3.607741 TGAAGTTGTACGTTTGTCCCAA 58.392 40.909 0.00 0.00 0.00 4.12
5861 6238 3.623960 TGAAGTTGTACGTTTGTCCCAAG 59.376 43.478 0.00 0.00 0.00 3.61
5862 6239 3.271055 AGTTGTACGTTTGTCCCAAGT 57.729 42.857 0.00 0.00 0.00 3.16
5863 6240 3.200483 AGTTGTACGTTTGTCCCAAGTC 58.800 45.455 0.00 0.00 0.00 3.01
5864 6241 2.937799 GTTGTACGTTTGTCCCAAGTCA 59.062 45.455 0.00 0.00 0.00 3.41
5865 6242 3.263489 TGTACGTTTGTCCCAAGTCAA 57.737 42.857 0.00 0.00 0.00 3.18
5866 6243 3.607741 TGTACGTTTGTCCCAAGTCAAA 58.392 40.909 0.00 0.00 0.00 2.69
5867 6244 3.374678 TGTACGTTTGTCCCAAGTCAAAC 59.625 43.478 0.00 9.71 43.91 2.93
5868 6245 2.718563 ACGTTTGTCCCAAGTCAAACT 58.281 42.857 15.33 4.16 44.65 2.66
5869 6246 3.086282 ACGTTTGTCCCAAGTCAAACTT 58.914 40.909 15.33 6.58 44.65 2.66
5885 6262 8.276252 AGTCAAACTTGCTTAAGTTTTACTGA 57.724 30.769 21.90 12.97 46.75 3.41
5886 6263 8.398665 AGTCAAACTTGCTTAAGTTTTACTGAG 58.601 33.333 21.90 10.04 46.75 3.35
5889 6266 7.859325 AACTTGCTTAAGTTTTACTGAGTCA 57.141 32.000 4.02 0.00 39.81 3.41
5890 6267 7.247929 ACTTGCTTAAGTTTTACTGAGTCAC 57.752 36.000 4.02 0.00 0.00 3.67
5891 6268 6.260271 ACTTGCTTAAGTTTTACTGAGTCACC 59.740 38.462 4.02 0.00 0.00 4.02
5892 6269 5.676552 TGCTTAAGTTTTACTGAGTCACCA 58.323 37.500 4.02 0.00 0.00 4.17
5893 6270 6.296026 TGCTTAAGTTTTACTGAGTCACCAT 58.704 36.000 4.02 0.00 0.00 3.55
5894 6271 6.204688 TGCTTAAGTTTTACTGAGTCACCATG 59.795 38.462 4.02 0.00 0.00 3.66
5895 6272 6.426937 GCTTAAGTTTTACTGAGTCACCATGA 59.573 38.462 4.02 0.00 0.00 3.07
5896 6273 7.041372 GCTTAAGTTTTACTGAGTCACCATGAA 60.041 37.037 4.02 0.00 0.00 2.57
5897 6274 8.918202 TTAAGTTTTACTGAGTCACCATGAAT 57.082 30.769 0.00 0.00 0.00 2.57
5900 6277 8.498054 AGTTTTACTGAGTCACCATGAATATG 57.502 34.615 0.00 0.00 0.00 1.78
5901 6278 8.103305 AGTTTTACTGAGTCACCATGAATATGT 58.897 33.333 0.00 0.00 32.21 2.29
5902 6279 8.730680 GTTTTACTGAGTCACCATGAATATGTT 58.269 33.333 0.00 0.00 32.21 2.71
5903 6280 8.862325 TTTACTGAGTCACCATGAATATGTTT 57.138 30.769 0.00 0.00 32.21 2.83
5904 6281 6.992063 ACTGAGTCACCATGAATATGTTTC 57.008 37.500 0.00 0.00 32.21 2.78
5905 6282 6.475504 ACTGAGTCACCATGAATATGTTTCA 58.524 36.000 0.00 0.00 32.21 2.69
5906 6283 7.114754 ACTGAGTCACCATGAATATGTTTCAT 58.885 34.615 0.00 1.09 39.53 2.57
5939 6316 8.109705 ACAAAGTATATTTGATGTTGCAGACA 57.890 30.769 7.30 4.56 36.46 3.41
5967 6344 7.532571 AGTAAAACATAAATGTAAACCTCGGC 58.467 34.615 0.00 0.00 40.80 5.54
5968 6345 4.609691 AACATAAATGTAAACCTCGGCG 57.390 40.909 0.00 0.00 40.80 6.46
5969 6346 2.940410 ACATAAATGTAAACCTCGGCGG 59.060 45.455 7.21 0.00 39.68 6.13
5970 6347 1.371595 TAAATGTAAACCTCGGCGGC 58.628 50.000 7.21 0.00 35.61 6.53
5971 6348 0.322187 AAATGTAAACCTCGGCGGCT 60.322 50.000 7.21 0.00 35.61 5.52
5972 6349 0.743345 AATGTAAACCTCGGCGGCTC 60.743 55.000 7.21 0.00 35.61 4.70
5973 6350 1.614241 ATGTAAACCTCGGCGGCTCT 61.614 55.000 7.21 0.00 35.61 4.09
5974 6351 1.079336 GTAAACCTCGGCGGCTCTT 60.079 57.895 7.21 0.00 35.61 2.85
5975 6352 0.672711 GTAAACCTCGGCGGCTCTTT 60.673 55.000 7.21 2.65 35.61 2.52
5976 6353 0.390735 TAAACCTCGGCGGCTCTTTC 60.391 55.000 7.21 0.00 35.61 2.62
5977 6354 3.607370 AACCTCGGCGGCTCTTTCC 62.607 63.158 7.21 0.00 35.61 3.13
5978 6355 4.840005 CCTCGGCGGCTCTTTCCC 62.840 72.222 7.21 0.00 0.00 3.97
5979 6356 3.775654 CTCGGCGGCTCTTTCCCT 61.776 66.667 7.21 0.00 0.00 4.20
5980 6357 4.082523 TCGGCGGCTCTTTCCCTG 62.083 66.667 7.21 0.00 0.00 4.45
5981 6358 4.394712 CGGCGGCTCTTTCCCTGT 62.395 66.667 7.61 0.00 0.00 4.00
5982 6359 2.747855 GGCGGCTCTTTCCCTGTG 60.748 66.667 0.00 0.00 0.00 3.66
5983 6360 2.347490 GCGGCTCTTTCCCTGTGA 59.653 61.111 0.00 0.00 0.00 3.58
5984 6361 1.078143 GCGGCTCTTTCCCTGTGAT 60.078 57.895 0.00 0.00 0.00 3.06
5985 6362 0.678048 GCGGCTCTTTCCCTGTGATT 60.678 55.000 0.00 0.00 0.00 2.57
5986 6363 1.373570 CGGCTCTTTCCCTGTGATTC 58.626 55.000 0.00 0.00 0.00 2.52
5987 6364 1.339055 CGGCTCTTTCCCTGTGATTCA 60.339 52.381 0.00 0.00 0.00 2.57
5988 6365 2.363683 GGCTCTTTCCCTGTGATTCAG 58.636 52.381 0.00 0.00 43.27 3.02
5989 6366 2.026822 GGCTCTTTCCCTGTGATTCAGA 60.027 50.000 0.00 0.00 46.27 3.27
5990 6367 3.006247 GCTCTTTCCCTGTGATTCAGAC 58.994 50.000 0.00 0.00 46.27 3.51
5991 6368 3.257393 CTCTTTCCCTGTGATTCAGACG 58.743 50.000 0.00 0.00 46.27 4.18
5992 6369 1.734465 CTTTCCCTGTGATTCAGACGC 59.266 52.381 0.00 0.00 46.27 5.19
5993 6370 0.036388 TTCCCTGTGATTCAGACGCC 60.036 55.000 0.00 0.00 46.27 5.68
5994 6371 1.450312 CCCTGTGATTCAGACGCCC 60.450 63.158 0.00 0.00 46.27 6.13
5995 6372 1.450312 CCTGTGATTCAGACGCCCC 60.450 63.158 0.00 0.00 46.27 5.80
5996 6373 1.811266 CTGTGATTCAGACGCCCCG 60.811 63.158 0.00 0.00 46.27 5.73
5997 6374 2.511600 GTGATTCAGACGCCCCGG 60.512 66.667 0.00 0.00 0.00 5.73
5998 6375 4.467084 TGATTCAGACGCCCCGGC 62.467 66.667 0.00 0.00 33.59 6.13
6019 6396 3.267860 GATGGCTTCCGCGAGCAG 61.268 66.667 19.83 8.26 44.49 4.24
6052 6429 3.056328 GGCACGTTTCTGCTCCCC 61.056 66.667 0.00 0.00 37.33 4.81
6053 6430 2.032681 GCACGTTTCTGCTCCCCT 59.967 61.111 0.00 0.00 34.06 4.79
6054 6431 2.035442 GCACGTTTCTGCTCCCCTC 61.035 63.158 0.00 0.00 34.06 4.30
6055 6432 1.376037 CACGTTTCTGCTCCCCTCC 60.376 63.158 0.00 0.00 0.00 4.30
6056 6433 2.269241 CGTTTCTGCTCCCCTCCC 59.731 66.667 0.00 0.00 0.00 4.30
6057 6434 2.294078 CGTTTCTGCTCCCCTCCCT 61.294 63.158 0.00 0.00 0.00 4.20
6058 6435 1.604915 GTTTCTGCTCCCCTCCCTC 59.395 63.158 0.00 0.00 0.00 4.30
6059 6436 1.616628 TTTCTGCTCCCCTCCCTCC 60.617 63.158 0.00 0.00 0.00 4.30
6060 6437 2.125066 TTTCTGCTCCCCTCCCTCCT 62.125 60.000 0.00 0.00 0.00 3.69
6061 6438 2.041928 CTGCTCCCCTCCCTCCTT 59.958 66.667 0.00 0.00 0.00 3.36
6062 6439 2.285668 TGCTCCCCTCCCTCCTTG 60.286 66.667 0.00 0.00 0.00 3.61
6063 6440 3.803162 GCTCCCCTCCCTCCTTGC 61.803 72.222 0.00 0.00 0.00 4.01
6064 6441 3.474570 CTCCCCTCCCTCCTTGCG 61.475 72.222 0.00 0.00 0.00 4.85
6088 6465 2.179767 CACATGGTGCGGTGCATG 59.820 61.111 0.00 0.00 41.91 4.06
6089 6466 3.063704 ACATGGTGCGGTGCATGG 61.064 61.111 0.00 0.00 41.91 3.66
6090 6467 3.063704 CATGGTGCGGTGCATGGT 61.064 61.111 0.00 0.00 41.91 3.55
6091 6468 3.063704 ATGGTGCGGTGCATGGTG 61.064 61.111 0.00 0.00 41.91 4.17
6094 6471 3.434319 GTGCGGTGCATGGTGGAG 61.434 66.667 0.00 0.00 41.91 3.86
6095 6472 3.952508 TGCGGTGCATGGTGGAGT 61.953 61.111 0.00 0.00 31.71 3.85
6096 6473 2.672996 GCGGTGCATGGTGGAGTT 60.673 61.111 0.00 0.00 0.00 3.01
6097 6474 2.981560 GCGGTGCATGGTGGAGTTG 61.982 63.158 0.00 0.00 0.00 3.16
6098 6475 2.964978 GGTGCATGGTGGAGTTGC 59.035 61.111 0.00 0.00 36.91 4.17
6099 6476 1.604593 GGTGCATGGTGGAGTTGCT 60.605 57.895 0.00 0.00 37.28 3.91
6100 6477 1.181098 GGTGCATGGTGGAGTTGCTT 61.181 55.000 0.00 0.00 37.28 3.91
6101 6478 0.038892 GTGCATGGTGGAGTTGCTTG 60.039 55.000 0.00 0.00 37.28 4.01
6102 6479 1.180456 TGCATGGTGGAGTTGCTTGG 61.180 55.000 0.00 0.00 37.28 3.61
6103 6480 0.895100 GCATGGTGGAGTTGCTTGGA 60.895 55.000 0.00 0.00 33.61 3.53
6104 6481 0.883833 CATGGTGGAGTTGCTTGGAC 59.116 55.000 0.00 0.00 0.00 4.02
6105 6482 0.478072 ATGGTGGAGTTGCTTGGACA 59.522 50.000 0.00 0.00 0.00 4.02
6106 6483 0.179020 TGGTGGAGTTGCTTGGACAG 60.179 55.000 0.00 0.00 0.00 3.51
6107 6484 0.890996 GGTGGAGTTGCTTGGACAGG 60.891 60.000 0.00 0.00 0.00 4.00
6108 6485 0.890996 GTGGAGTTGCTTGGACAGGG 60.891 60.000 0.00 0.00 0.00 4.45
6109 6486 1.303643 GGAGTTGCTTGGACAGGGG 60.304 63.158 0.00 0.00 0.00 4.79
6110 6487 1.303643 GAGTTGCTTGGACAGGGGG 60.304 63.158 0.00 0.00 0.00 5.40
6111 6488 2.991540 GTTGCTTGGACAGGGGGC 60.992 66.667 0.00 0.00 0.00 5.80
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 9.062524 TGCAAGTTAGCATTCTAGAACTTTTTA 57.937 29.630 7.48 0.00 40.11 1.52
122 125 0.618680 TCCATGGACCTGGACCTCTG 60.619 60.000 11.44 12.54 40.43 3.35
172 175 4.357947 ACAGCGCGGTCATGACGT 62.358 61.111 19.33 7.80 0.00 4.34
173 176 3.545481 GACAGCGCGGTCATGACG 61.545 66.667 31.48 15.06 37.73 4.35
195 198 1.007524 GTTTTAAATTGCGCGCATCCG 60.008 47.619 36.83 0.00 37.57 4.18
245 273 1.000486 CCAGAGAAGGAGGGGACGA 60.000 63.158 0.00 0.00 0.00 4.20
458 490 1.380302 GCTGGAACTCCACCACCAT 59.620 57.895 0.00 0.00 42.01 3.55
461 493 0.603975 GACTGCTGGAACTCCACCAC 60.604 60.000 0.00 0.00 42.01 4.16
546 578 2.356075 CGCCACCGTCGTACCAAA 60.356 61.111 0.00 0.00 0.00 3.28
580 612 2.473664 GATCGCCATACCTCCGTCGG 62.474 65.000 4.39 4.39 0.00 4.79
622 654 3.982576 TTCCTGAAGCGGTTCTTTTTC 57.017 42.857 26.05 1.74 34.56 2.29
623 655 3.068165 CCTTTCCTGAAGCGGTTCTTTTT 59.932 43.478 26.05 0.00 34.56 1.94
624 656 2.623416 CCTTTCCTGAAGCGGTTCTTTT 59.377 45.455 26.05 0.00 34.56 2.27
625 657 2.230660 CCTTTCCTGAAGCGGTTCTTT 58.769 47.619 26.05 0.00 34.56 2.52
626 658 1.143073 ACCTTTCCTGAAGCGGTTCTT 59.857 47.619 26.05 0.80 37.83 2.52
627 659 0.765510 ACCTTTCCTGAAGCGGTTCT 59.234 50.000 26.05 2.38 33.84 3.01
628 660 1.535896 GAACCTTTCCTGAAGCGGTTC 59.464 52.381 20.13 20.13 41.21 3.62
629 661 1.143073 AGAACCTTTCCTGAAGCGGTT 59.857 47.619 0.00 0.00 38.07 4.44
630 662 0.765510 AGAACCTTTCCTGAAGCGGT 59.234 50.000 0.00 0.00 33.84 5.68
631 663 2.233922 TCTAGAACCTTTCCTGAAGCGG 59.766 50.000 0.00 0.00 33.84 5.52
632 664 3.594603 TCTAGAACCTTTCCTGAAGCG 57.405 47.619 0.00 0.00 33.84 4.68
633 665 4.900684 AGTTCTAGAACCTTTCCTGAAGC 58.099 43.478 28.05 2.74 42.06 3.86
634 666 6.428465 GGAAAGTTCTAGAACCTTTCCTGAAG 59.572 42.308 36.32 3.04 44.26 3.02
635 667 6.296803 GGAAAGTTCTAGAACCTTTCCTGAA 58.703 40.000 36.32 9.23 44.26 3.02
636 668 5.221864 GGGAAAGTTCTAGAACCTTTCCTGA 60.222 44.000 38.25 12.01 45.30 3.86
637 669 5.004448 GGGAAAGTTCTAGAACCTTTCCTG 58.996 45.833 38.25 5.58 45.30 3.86
638 670 4.663592 TGGGAAAGTTCTAGAACCTTTCCT 59.336 41.667 38.25 22.63 45.30 3.36
639 671 4.981812 TGGGAAAGTTCTAGAACCTTTCC 58.018 43.478 36.19 36.19 45.28 3.13
640 672 6.238953 GGTTTGGGAAAGTTCTAGAACCTTTC 60.239 42.308 29.27 29.27 42.06 2.62
641 673 5.597182 GGTTTGGGAAAGTTCTAGAACCTTT 59.403 40.000 28.05 24.65 42.06 3.11
642 674 5.138276 GGTTTGGGAAAGTTCTAGAACCTT 58.862 41.667 28.05 22.81 42.06 3.50
643 675 4.447325 GGGTTTGGGAAAGTTCTAGAACCT 60.447 45.833 28.05 15.83 42.06 3.50
644 676 3.825014 GGGTTTGGGAAAGTTCTAGAACC 59.175 47.826 28.05 15.24 42.06 3.62
645 677 3.501062 CGGGTTTGGGAAAGTTCTAGAAC 59.499 47.826 25.24 25.24 41.45 3.01
646 678 3.497227 CCGGGTTTGGGAAAGTTCTAGAA 60.497 47.826 0.00 0.00 0.00 2.10
647 679 2.039348 CCGGGTTTGGGAAAGTTCTAGA 59.961 50.000 0.00 0.00 0.00 2.43
648 680 2.224695 ACCGGGTTTGGGAAAGTTCTAG 60.225 50.000 6.32 0.00 0.00 2.43
649 681 1.776063 ACCGGGTTTGGGAAAGTTCTA 59.224 47.619 6.32 0.00 0.00 2.10
650 682 0.554305 ACCGGGTTTGGGAAAGTTCT 59.446 50.000 6.32 0.00 0.00 3.01
651 683 0.671796 CACCGGGTTTGGGAAAGTTC 59.328 55.000 6.32 0.00 0.00 3.01
652 684 0.757561 CCACCGGGTTTGGGAAAGTT 60.758 55.000 6.32 0.00 0.00 2.66
653 685 1.152631 CCACCGGGTTTGGGAAAGT 60.153 57.895 6.32 0.00 0.00 2.66
654 686 0.893727 CTCCACCGGGTTTGGGAAAG 60.894 60.000 6.32 0.00 34.56 2.62
655 687 1.151908 CTCCACCGGGTTTGGGAAA 59.848 57.895 6.32 0.00 34.56 3.13
656 688 1.137594 ATCTCCACCGGGTTTGGGAA 61.138 55.000 6.32 0.00 34.56 3.97
657 689 1.540367 ATCTCCACCGGGTTTGGGA 60.540 57.895 6.32 0.00 34.56 4.37
658 690 1.378514 CATCTCCACCGGGTTTGGG 60.379 63.158 6.32 0.00 34.56 4.12
659 691 0.037590 TTCATCTCCACCGGGTTTGG 59.962 55.000 6.32 4.48 34.93 3.28
660 692 1.904287 TTTCATCTCCACCGGGTTTG 58.096 50.000 6.32 0.00 34.93 2.93
661 693 2.620627 GGATTTCATCTCCACCGGGTTT 60.621 50.000 6.32 0.00 34.93 3.27
662 694 1.064685 GGATTTCATCTCCACCGGGTT 60.065 52.381 6.32 0.00 34.93 4.11
663 695 0.546598 GGATTTCATCTCCACCGGGT 59.453 55.000 6.32 0.00 34.93 5.28
664 696 0.532862 CGGATTTCATCTCCACCGGG 60.533 60.000 6.32 0.00 37.28 5.73
665 697 2.992089 CGGATTTCATCTCCACCGG 58.008 57.895 0.00 0.00 37.28 5.28
666 698 0.464036 TCCGGATTTCATCTCCACCG 59.536 55.000 0.00 0.00 40.03 4.94
667 699 2.938956 ATCCGGATTTCATCTCCACC 57.061 50.000 12.38 0.00 32.72 4.61
668 700 4.697352 CCATTATCCGGATTTCATCTCCAC 59.303 45.833 24.71 0.00 32.72 4.02
669 701 4.263462 CCCATTATCCGGATTTCATCTCCA 60.263 45.833 24.71 0.00 32.72 3.86
670 702 4.265073 CCCATTATCCGGATTTCATCTCC 58.735 47.826 24.71 0.00 0.00 3.71
671 703 3.691609 GCCCATTATCCGGATTTCATCTC 59.308 47.826 24.71 3.43 0.00 2.75
672 704 3.562176 GGCCCATTATCCGGATTTCATCT 60.562 47.826 24.71 0.00 0.00 2.90
673 705 2.755103 GGCCCATTATCCGGATTTCATC 59.245 50.000 24.71 7.91 0.00 2.92
674 706 2.807676 GGCCCATTATCCGGATTTCAT 58.192 47.619 24.71 9.90 0.00 2.57
675 707 1.544537 CGGCCCATTATCCGGATTTCA 60.545 52.381 24.71 7.74 41.82 2.69
676 708 1.165270 CGGCCCATTATCCGGATTTC 58.835 55.000 24.71 5.58 41.82 2.17
677 709 3.339547 CGGCCCATTATCCGGATTT 57.660 52.632 24.71 8.10 41.82 2.17
691 723 4.449568 TAAACGTACGGGCCGGCC 62.450 66.667 38.57 38.57 0.00 6.13
692 724 2.887086 CTAAACGTACGGGCCGGC 60.887 66.667 31.78 21.18 0.00 6.13
693 725 2.019897 ATCCTAAACGTACGGGCCGG 62.020 60.000 31.78 15.34 0.00 6.13
694 726 0.872881 CATCCTAAACGTACGGGCCG 60.873 60.000 27.06 27.06 0.00 6.13
695 727 0.531311 CCATCCTAAACGTACGGGCC 60.531 60.000 21.06 0.00 0.00 5.80
696 728 0.531311 CCCATCCTAAACGTACGGGC 60.531 60.000 21.06 0.00 0.00 6.13
697 729 0.105408 CCCCATCCTAAACGTACGGG 59.895 60.000 21.06 11.08 0.00 5.28
698 730 0.826062 ACCCCATCCTAAACGTACGG 59.174 55.000 21.06 0.68 0.00 4.02
699 731 2.678471 AACCCCATCCTAAACGTACG 57.322 50.000 15.01 15.01 0.00 3.67
700 732 3.447742 CGTAACCCCATCCTAAACGTAC 58.552 50.000 0.00 0.00 0.00 3.67
701 733 2.159114 GCGTAACCCCATCCTAAACGTA 60.159 50.000 0.00 0.00 0.00 3.57
702 734 1.405933 GCGTAACCCCATCCTAAACGT 60.406 52.381 0.00 0.00 0.00 3.99
703 735 1.292992 GCGTAACCCCATCCTAAACG 58.707 55.000 0.00 0.00 0.00 3.60
704 736 1.292992 CGCGTAACCCCATCCTAAAC 58.707 55.000 0.00 0.00 0.00 2.01
705 737 0.462403 GCGCGTAACCCCATCCTAAA 60.462 55.000 8.43 0.00 0.00 1.85
706 738 1.144496 GCGCGTAACCCCATCCTAA 59.856 57.895 8.43 0.00 0.00 2.69
707 739 2.816718 GCGCGTAACCCCATCCTA 59.183 61.111 8.43 0.00 0.00 2.94
708 740 4.524318 CGCGCGTAACCCCATCCT 62.524 66.667 24.19 0.00 0.00 3.24
709 741 4.517815 TCGCGCGTAACCCCATCC 62.518 66.667 30.98 0.00 0.00 3.51
710 742 2.960129 CTCGCGCGTAACCCCATC 60.960 66.667 30.98 0.00 0.00 3.51
794 826 3.678072 CCGCTGGTGGTGTTATTATATCG 59.322 47.826 0.00 0.00 0.00 2.92
877 918 1.276705 AGAAAGAAGAGGGGAAGCGAC 59.723 52.381 0.00 0.00 0.00 5.19
880 921 4.006989 GAGAAAGAAAGAAGAGGGGAAGC 58.993 47.826 0.00 0.00 0.00 3.86
998 1056 3.142838 CCTCCTTGCCCGCCATTG 61.143 66.667 0.00 0.00 0.00 2.82
1139 1200 1.162181 GCATGCGCTGAGGATAAGCA 61.162 55.000 9.73 0.00 42.28 3.91
1171 1232 8.751335 CATACATGCCCACGAAATAATAAAAAC 58.249 33.333 0.00 0.00 0.00 2.43
1289 1373 7.285858 GGTAGCAGGACCCTATCACTTATATAG 59.714 44.444 0.00 0.00 32.88 1.31
1327 1413 2.622436 CCTTGTTCGGATCCAGAGAAC 58.378 52.381 18.85 18.85 43.12 3.01
1392 1478 7.838884 ACTGTGAAGTATTAACCCTAGAGAAC 58.161 38.462 0.00 0.00 0.00 3.01
1402 1488 6.120220 AGCCCCATTACTGTGAAGTATTAAC 58.880 40.000 0.00 0.00 0.00 2.01
1489 1580 4.666176 GCATATTACATTGTGCGTTTCGAG 59.334 41.667 0.00 0.00 0.00 4.04
1533 1624 4.049869 GGAGTACTAATTAGAACCTGCGC 58.950 47.826 19.38 0.00 0.00 6.09
1570 1661 9.953697 CTAAAGTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 0.00 1.73
1571 1662 8.954350 ACTAAAGTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 37.69 2.10
1574 1665 9.733219 AATACTAAAGTAGTGATCTAAACGCTC 57.267 33.333 0.00 0.00 39.81 5.03
1576 1667 9.733219 AGAATACTAAAGTAGTGATCTAAACGC 57.267 33.333 0.00 0.00 39.81 4.84
1582 1673 9.733219 GCGTTTAGAATACTAAAGTAGTGATCT 57.267 33.333 0.00 4.67 45.42 2.75
1583 1674 9.733219 AGCGTTTAGAATACTAAAGTAGTGATC 57.267 33.333 0.00 0.00 45.42 2.92
1584 1675 9.733219 GAGCGTTTAGAATACTAAAGTAGTGAT 57.267 33.333 0.00 0.00 45.42 3.06
1586 1677 9.570488 AAGAGCGTTTAGAATACTAAAGTAGTG 57.430 33.333 0.00 0.00 45.42 2.74
1601 1692 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
1602 1693 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
1604 1695 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
1605 1696 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
1606 1697 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
1607 1698 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
1608 1699 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
1610 1701 9.512588 TCTACTCCCTCCGTAAACTAATATAAG 57.487 37.037 0.00 0.00 0.00 1.73
1611 1702 9.866655 TTCTACTCCCTCCGTAAACTAATATAA 57.133 33.333 0.00 0.00 0.00 0.98
1613 1704 8.953223 ATTCTACTCCCTCCGTAAACTAATAT 57.047 34.615 0.00 0.00 0.00 1.28
1614 1705 8.773033 AATTCTACTCCCTCCGTAAACTAATA 57.227 34.615 0.00 0.00 0.00 0.98
1615 1706 7.672122 AATTCTACTCCCTCCGTAAACTAAT 57.328 36.000 0.00 0.00 0.00 1.73
1616 1707 7.486407 AAATTCTACTCCCTCCGTAAACTAA 57.514 36.000 0.00 0.00 0.00 2.24
1617 1708 8.773033 ATAAATTCTACTCCCTCCGTAAACTA 57.227 34.615 0.00 0.00 0.00 2.24
1619 1710 7.254692 GCAATAAATTCTACTCCCTCCGTAAAC 60.255 40.741 0.00 0.00 0.00 2.01
1620 1711 6.764560 GCAATAAATTCTACTCCCTCCGTAAA 59.235 38.462 0.00 0.00 0.00 2.01
1622 1713 5.601313 AGCAATAAATTCTACTCCCTCCGTA 59.399 40.000 0.00 0.00 0.00 4.02
1693 1870 6.151817 GGGAGAGAAAAATACTGTGAGCATTT 59.848 38.462 0.00 0.00 0.00 2.32
1715 1892 2.532715 AGCCAGCAAAGGGAGGGA 60.533 61.111 0.00 0.00 0.00 4.20
1851 2028 2.406024 CGCACAAAACACTCATGATTGC 59.594 45.455 12.62 3.55 32.77 3.56
1954 2131 0.895100 TTCAGGCATCCAACTGTGGC 60.895 55.000 0.00 0.00 45.54 5.01
1957 2134 1.421268 TCACTTCAGGCATCCAACTGT 59.579 47.619 0.00 0.00 36.17 3.55
1963 2140 2.681848 CTGATGTTCACTTCAGGCATCC 59.318 50.000 12.85 0.00 41.63 3.51
2142 2325 1.683365 ACAGGGCATGCATGGAACC 60.683 57.895 27.34 19.24 0.00 3.62
2210 2393 0.601046 CTGTCTGTTGAGCCGCTTCA 60.601 55.000 0.00 0.00 0.00 3.02
2547 2732 7.901283 AATGATTGGGACATGATGATTACAA 57.099 32.000 0.00 0.00 39.30 2.41
2556 2741 7.519927 TGATGAGATAAATGATTGGGACATGA 58.480 34.615 0.00 0.00 39.30 3.07
2759 2946 7.305533 CGGTTTTCATAACAAAAGTTACCAACG 60.306 37.037 0.00 0.00 36.23 4.10
3088 3275 9.715121 TTTCACCGTAAATTAGTGAATTACTCT 57.285 29.630 8.13 0.00 46.64 3.24
3120 3309 7.839705 ACCAGTTCAGTAGTTAGATCCATCTAA 59.160 37.037 5.11 5.11 44.63 2.10
3277 3469 9.183368 TCCTATAGCACATCTCATATCAACTAG 57.817 37.037 0.00 0.00 0.00 2.57
3414 3608 2.408050 AGCAAAGCTCGTTGTACTGAG 58.592 47.619 0.36 0.24 30.62 3.35
3584 3778 7.932335 ACAACCATTCGTAAAAATCAGTTGTA 58.068 30.769 0.00 0.00 39.26 2.41
3740 3934 1.559219 TGCAGGTCTATAGCAGCCAAA 59.441 47.619 0.00 0.00 34.98 3.28
3782 3976 1.595794 ACGTGCTTTGACAAGGTAACG 59.404 47.619 18.93 18.93 46.39 3.18
3904 4098 3.997021 CTGGTACTTTGAATTCAGCGACT 59.003 43.478 8.41 0.00 0.00 4.18
3923 4117 3.954258 AGAAACTGGAAACTGGAAACTGG 59.046 43.478 0.00 0.00 0.00 4.00
3924 4118 5.582689 AAGAAACTGGAAACTGGAAACTG 57.417 39.130 0.00 0.00 0.00 3.16
3929 4123 9.847224 GGATTATATAAGAAACTGGAAACTGGA 57.153 33.333 1.02 0.00 0.00 3.86
4120 4468 3.417069 TCATTACCACAACACTCCCAG 57.583 47.619 0.00 0.00 0.00 4.45
4124 4472 4.000988 ACGGATTCATTACCACAACACTC 58.999 43.478 0.00 0.00 0.00 3.51
4182 4530 4.121317 CTGCAAAACCTTTGAATTCAGCA 58.879 39.130 8.41 10.82 0.00 4.41
4209 4557 3.640967 ACAGAGCAAAGCCAAATGGTAAA 59.359 39.130 0.71 0.00 37.57 2.01
4355 4703 5.048504 ACCATCTAACTCTTTGTTGTGCATG 60.049 40.000 0.00 0.00 39.55 4.06
4583 4931 1.142870 CCACCACTGAACTTGGAAGGA 59.857 52.381 0.00 0.00 37.58 3.36
4799 5147 0.108186 CATAACGGTCTGGAGCTGCA 60.108 55.000 7.99 7.99 0.00 4.41
4838 5186 3.865383 CGCTCCCTGCCATAGCCA 61.865 66.667 0.00 0.00 38.69 4.75
5108 5459 1.140852 ACTGCAGCAACAGGTCACTAA 59.859 47.619 15.27 0.00 42.21 2.24
5237 5593 1.435577 GTAAACTACCAGTGCCCACG 58.564 55.000 0.00 0.00 36.20 4.94
5281 5637 1.386533 CAGGGCATGACAGATTCACC 58.613 55.000 0.00 0.00 36.92 4.02
5282 5638 1.386533 CCAGGGCATGACAGATTCAC 58.613 55.000 0.00 0.00 36.92 3.18
5308 5664 3.624777 ACCATCATTCAGCAAAGGTAGG 58.375 45.455 0.00 0.00 0.00 3.18
5353 5715 5.755375 GCAGGATTTCATAAGTTCAGATCGA 59.245 40.000 0.00 0.00 0.00 3.59
5354 5716 5.757320 AGCAGGATTTCATAAGTTCAGATCG 59.243 40.000 0.00 0.00 0.00 3.69
5355 5717 6.017275 CCAGCAGGATTTCATAAGTTCAGATC 60.017 42.308 0.00 0.00 36.89 2.75
5380 5743 2.543777 TCTTACCAACCACAGCAGAC 57.456 50.000 0.00 0.00 0.00 3.51
5397 5760 0.619505 AGCAGAGCAGCAGGATTTCT 59.380 50.000 0.00 0.00 36.85 2.52
5417 5780 2.501261 CGTGCCATCAGATTCATCCAT 58.499 47.619 0.00 0.00 0.00 3.41
5482 5845 1.079266 CAGGCTCAGTCTGCTGGAC 60.079 63.158 0.00 2.89 42.78 4.02
5699 6069 1.644509 ACTCATACCCAGTCAGCACA 58.355 50.000 0.00 0.00 0.00 4.57
5700 6070 2.770164 AACTCATACCCAGTCAGCAC 57.230 50.000 0.00 0.00 0.00 4.40
5701 6071 3.708451 TCTAACTCATACCCAGTCAGCA 58.292 45.455 0.00 0.00 0.00 4.41
5702 6072 4.737855 TTCTAACTCATACCCAGTCAGC 57.262 45.455 0.00 0.00 0.00 4.26
5703 6073 5.525378 GCATTTCTAACTCATACCCAGTCAG 59.475 44.000 0.00 0.00 0.00 3.51
5704 6074 5.045942 TGCATTTCTAACTCATACCCAGTCA 60.046 40.000 0.00 0.00 0.00 3.41
5705 6075 5.428253 TGCATTTCTAACTCATACCCAGTC 58.572 41.667 0.00 0.00 0.00 3.51
5706 6076 5.189736 TCTGCATTTCTAACTCATACCCAGT 59.810 40.000 0.00 0.00 0.00 4.00
5707 6077 5.674525 TCTGCATTTCTAACTCATACCCAG 58.325 41.667 0.00 0.00 0.00 4.45
5708 6078 5.692115 TCTGCATTTCTAACTCATACCCA 57.308 39.130 0.00 0.00 0.00 4.51
5709 6079 8.677148 TTATTCTGCATTTCTAACTCATACCC 57.323 34.615 0.00 0.00 0.00 3.69
5710 6080 9.331282 ACTTATTCTGCATTTCTAACTCATACC 57.669 33.333 0.00 0.00 0.00 2.73
5756 6126 5.121454 GCACAGGAGTTCTACTGAAAGAATG 59.879 44.000 17.67 6.42 37.78 2.67
5757 6127 5.221722 TGCACAGGAGTTCTACTGAAAGAAT 60.222 40.000 17.67 0.00 37.78 2.40
5759 6129 3.641436 TGCACAGGAGTTCTACTGAAAGA 59.359 43.478 17.67 0.00 38.09 2.52
5760 6130 3.995199 TGCACAGGAGTTCTACTGAAAG 58.005 45.455 17.67 8.68 38.09 2.62
5765 6135 4.718961 ACATTTTGCACAGGAGTTCTACT 58.281 39.130 0.00 0.00 0.00 2.57
5769 6139 4.377431 CGAGTACATTTTGCACAGGAGTTC 60.377 45.833 0.00 0.00 0.00 3.01
5772 6142 3.325870 TCGAGTACATTTTGCACAGGAG 58.674 45.455 0.00 0.00 0.00 3.69
5774 6144 3.067106 ACTCGAGTACATTTTGCACAGG 58.933 45.455 18.46 0.00 0.00 4.00
5789 6159 0.238553 TCTTCGTGCTGACACTCGAG 59.761 55.000 11.84 11.84 45.10 4.04
5791 6161 1.702886 ATTCTTCGTGCTGACACTCG 58.297 50.000 0.00 0.00 45.10 4.18
5799 6169 6.456501 AGAGTAAGTTTGTATTCTTCGTGCT 58.543 36.000 0.00 0.00 0.00 4.40
5800 6170 6.586844 AGAGAGTAAGTTTGTATTCTTCGTGC 59.413 38.462 0.00 0.00 0.00 5.34
5802 6172 7.883217 TCAGAGAGTAAGTTTGTATTCTTCGT 58.117 34.615 0.00 0.00 0.00 3.85
5824 6201 9.265938 CGTACAACTTCAAATATGTTGAATCAG 57.734 33.333 11.30 4.16 42.86 2.90
5867 6244 6.260050 TGGTGACTCAGTAAAACTTAAGCAAG 59.740 38.462 1.29 0.00 37.81 4.01
5868 6245 6.116806 TGGTGACTCAGTAAAACTTAAGCAA 58.883 36.000 1.29 0.00 0.00 3.91
5869 6246 5.676552 TGGTGACTCAGTAAAACTTAAGCA 58.323 37.500 1.29 0.00 0.00 3.91
5870 6247 6.426937 TCATGGTGACTCAGTAAAACTTAAGC 59.573 38.462 1.29 0.00 0.00 3.09
5871 6248 7.962964 TCATGGTGACTCAGTAAAACTTAAG 57.037 36.000 0.00 0.00 0.00 1.85
5872 6249 8.918202 ATTCATGGTGACTCAGTAAAACTTAA 57.082 30.769 0.00 0.00 0.00 1.85
5874 6251 8.950210 CATATTCATGGTGACTCAGTAAAACTT 58.050 33.333 0.00 0.00 0.00 2.66
5875 6252 8.103305 ACATATTCATGGTGACTCAGTAAAACT 58.897 33.333 0.00 0.00 36.39 2.66
5876 6253 8.268850 ACATATTCATGGTGACTCAGTAAAAC 57.731 34.615 0.00 0.00 36.39 2.43
5877 6254 8.862325 AACATATTCATGGTGACTCAGTAAAA 57.138 30.769 0.00 0.00 36.39 1.52
5878 6255 8.862325 AAACATATTCATGGTGACTCAGTAAA 57.138 30.769 0.00 0.00 36.39 2.01
5879 6256 8.100164 TGAAACATATTCATGGTGACTCAGTAA 58.900 33.333 0.00 0.00 36.39 2.24
5880 6257 7.619965 TGAAACATATTCATGGTGACTCAGTA 58.380 34.615 0.00 0.00 36.39 2.74
5881 6258 6.475504 TGAAACATATTCATGGTGACTCAGT 58.524 36.000 0.00 0.00 36.39 3.41
5882 6259 6.990341 TGAAACATATTCATGGTGACTCAG 57.010 37.500 0.00 0.00 36.39 3.35
5913 6290 9.225436 TGTCTGCAACATCAAATATACTTTGTA 57.775 29.630 0.00 0.00 31.20 2.41
5914 6291 8.109705 TGTCTGCAACATCAAATATACTTTGT 57.890 30.769 0.00 0.00 31.20 2.83
5941 6318 8.667463 GCCGAGGTTTACATTTATGTTTTACTA 58.333 33.333 0.02 0.00 41.97 1.82
5942 6319 7.532571 GCCGAGGTTTACATTTATGTTTTACT 58.467 34.615 0.02 0.00 41.97 2.24
5943 6320 6.466730 CGCCGAGGTTTACATTTATGTTTTAC 59.533 38.462 0.02 0.00 41.97 2.01
5944 6321 6.403418 CCGCCGAGGTTTACATTTATGTTTTA 60.403 38.462 0.02 0.00 37.45 1.52
5945 6322 5.395642 CGCCGAGGTTTACATTTATGTTTT 58.604 37.500 0.02 0.00 41.97 2.43
5946 6323 4.142556 CCGCCGAGGTTTACATTTATGTTT 60.143 41.667 0.02 0.00 37.45 2.83
5947 6324 3.375922 CCGCCGAGGTTTACATTTATGTT 59.624 43.478 0.02 0.00 37.45 2.71
5948 6325 2.940410 CCGCCGAGGTTTACATTTATGT 59.060 45.455 0.53 0.53 38.88 2.29
5949 6326 2.286772 GCCGCCGAGGTTTACATTTATG 60.287 50.000 0.00 0.00 43.70 1.90
5950 6327 1.944709 GCCGCCGAGGTTTACATTTAT 59.055 47.619 0.00 0.00 43.70 1.40
5951 6328 1.065998 AGCCGCCGAGGTTTACATTTA 60.066 47.619 0.00 0.00 43.70 1.40
5952 6329 0.322187 AGCCGCCGAGGTTTACATTT 60.322 50.000 0.00 0.00 43.70 2.32
5953 6330 0.743345 GAGCCGCCGAGGTTTACATT 60.743 55.000 0.00 0.00 43.70 2.71
5954 6331 1.153429 GAGCCGCCGAGGTTTACAT 60.153 57.895 0.00 0.00 43.70 2.29
5955 6332 1.823169 AAGAGCCGCCGAGGTTTACA 61.823 55.000 0.00 0.00 43.70 2.41
5956 6333 0.672711 AAAGAGCCGCCGAGGTTTAC 60.673 55.000 0.00 0.00 43.70 2.01
5957 6334 0.390735 GAAAGAGCCGCCGAGGTTTA 60.391 55.000 0.00 0.00 43.70 2.01
5958 6335 1.671379 GAAAGAGCCGCCGAGGTTT 60.671 57.895 0.00 0.00 43.70 3.27
5959 6336 2.047179 GAAAGAGCCGCCGAGGTT 60.047 61.111 0.00 0.00 43.70 3.50
5960 6337 4.083862 GGAAAGAGCCGCCGAGGT 62.084 66.667 0.00 0.00 43.70 3.85
5961 6338 4.840005 GGGAAAGAGCCGCCGAGG 62.840 72.222 0.00 0.00 44.97 4.63
5962 6339 3.775654 AGGGAAAGAGCCGCCGAG 61.776 66.667 0.00 0.00 0.00 4.63
5963 6340 4.082523 CAGGGAAAGAGCCGCCGA 62.083 66.667 0.00 0.00 0.00 5.54
5964 6341 4.394712 ACAGGGAAAGAGCCGCCG 62.395 66.667 0.00 0.00 0.00 6.46
5965 6342 2.543067 ATCACAGGGAAAGAGCCGCC 62.543 60.000 0.00 0.00 0.00 6.13
5966 6343 0.678048 AATCACAGGGAAAGAGCCGC 60.678 55.000 0.00 0.00 0.00 6.53
5967 6344 1.339055 TGAATCACAGGGAAAGAGCCG 60.339 52.381 0.00 0.00 0.00 5.52
5968 6345 2.026822 TCTGAATCACAGGGAAAGAGCC 60.027 50.000 0.00 0.00 45.76 4.70
5969 6346 3.006247 GTCTGAATCACAGGGAAAGAGC 58.994 50.000 0.00 0.00 45.76 4.09
5970 6347 3.257393 CGTCTGAATCACAGGGAAAGAG 58.743 50.000 0.00 0.00 45.76 2.85
5971 6348 2.612972 GCGTCTGAATCACAGGGAAAGA 60.613 50.000 0.00 0.00 45.76 2.52
5972 6349 1.734465 GCGTCTGAATCACAGGGAAAG 59.266 52.381 0.00 0.00 45.76 2.62
5973 6350 1.610624 GGCGTCTGAATCACAGGGAAA 60.611 52.381 0.00 0.00 45.76 3.13
5974 6351 0.036388 GGCGTCTGAATCACAGGGAA 60.036 55.000 0.00 0.00 45.76 3.97
5975 6352 1.596934 GGCGTCTGAATCACAGGGA 59.403 57.895 0.00 0.00 45.76 4.20
5976 6353 1.450312 GGGCGTCTGAATCACAGGG 60.450 63.158 0.00 0.00 45.76 4.45
5977 6354 1.450312 GGGGCGTCTGAATCACAGG 60.450 63.158 0.00 0.00 45.76 4.00
5978 6355 1.811266 CGGGGCGTCTGAATCACAG 60.811 63.158 0.00 0.00 46.97 3.66
5979 6356 2.264480 CGGGGCGTCTGAATCACA 59.736 61.111 0.00 0.00 0.00 3.58
5980 6357 2.511600 CCGGGGCGTCTGAATCAC 60.512 66.667 0.00 0.00 0.00 3.06
5981 6358 4.467084 GCCGGGGCGTCTGAATCA 62.467 66.667 2.18 0.00 0.00 2.57
6025 6402 2.627201 GAAACGTGCCGCCTAATCGC 62.627 60.000 0.00 0.00 0.00 4.58
6026 6403 1.082117 AGAAACGTGCCGCCTAATCG 61.082 55.000 0.00 0.00 0.00 3.34
6027 6404 0.373716 CAGAAACGTGCCGCCTAATC 59.626 55.000 0.00 0.00 0.00 1.75
6028 6405 1.644786 GCAGAAACGTGCCGCCTAAT 61.645 55.000 0.00 0.00 37.49 1.73
6029 6406 2.322081 GCAGAAACGTGCCGCCTAA 61.322 57.895 0.00 0.00 37.49 2.69
6030 6407 2.740826 GCAGAAACGTGCCGCCTA 60.741 61.111 0.00 0.00 37.49 3.93
6031 6408 4.626081 AGCAGAAACGTGCCGCCT 62.626 61.111 0.00 0.00 45.20 5.52
6032 6409 4.090057 GAGCAGAAACGTGCCGCC 62.090 66.667 0.00 0.00 45.20 6.13
6033 6410 4.090057 GGAGCAGAAACGTGCCGC 62.090 66.667 0.00 0.00 45.20 6.53
6034 6411 3.423154 GGGAGCAGAAACGTGCCG 61.423 66.667 0.00 0.00 45.20 5.69
6035 6412 3.056328 GGGGAGCAGAAACGTGCC 61.056 66.667 0.00 0.00 45.20 5.01
6036 6413 2.032681 AGGGGAGCAGAAACGTGC 59.967 61.111 0.00 0.00 44.35 5.34
6037 6414 1.376037 GGAGGGGAGCAGAAACGTG 60.376 63.158 0.00 0.00 0.00 4.49
6038 6415 2.593956 GGGAGGGGAGCAGAAACGT 61.594 63.158 0.00 0.00 0.00 3.99
6039 6416 2.245438 GAGGGAGGGGAGCAGAAACG 62.245 65.000 0.00 0.00 0.00 3.60
6040 6417 1.604915 GAGGGAGGGGAGCAGAAAC 59.395 63.158 0.00 0.00 0.00 2.78
6041 6418 1.616628 GGAGGGAGGGGAGCAGAAA 60.617 63.158 0.00 0.00 0.00 2.52
6042 6419 2.041265 GGAGGGAGGGGAGCAGAA 59.959 66.667 0.00 0.00 0.00 3.02
6043 6420 2.571816 AAGGAGGGAGGGGAGCAGA 61.572 63.158 0.00 0.00 0.00 4.26
6044 6421 2.041928 AAGGAGGGAGGGGAGCAG 59.958 66.667 0.00 0.00 0.00 4.24
6045 6422 2.285668 CAAGGAGGGAGGGGAGCA 60.286 66.667 0.00 0.00 0.00 4.26
6046 6423 3.803162 GCAAGGAGGGAGGGGAGC 61.803 72.222 0.00 0.00 0.00 4.70
6047 6424 3.474570 CGCAAGGAGGGAGGGGAG 61.475 72.222 0.00 0.00 0.00 4.30
6059 6436 2.483745 CATGTGCTGCTCCGCAAG 59.516 61.111 0.00 0.00 42.32 4.01
6060 6437 3.057548 CCATGTGCTGCTCCGCAA 61.058 61.111 0.00 0.00 42.32 4.85
6061 6438 4.334118 ACCATGTGCTGCTCCGCA 62.334 61.111 0.00 0.00 37.62 5.69
6062 6439 3.807538 CACCATGTGCTGCTCCGC 61.808 66.667 0.00 0.00 0.00 5.54
6071 6448 2.179767 CATGCACCGCACCATGTG 59.820 61.111 0.00 0.00 43.04 3.21
6072 6449 3.063704 CCATGCACCGCACCATGT 61.064 61.111 0.00 0.00 43.04 3.21
6073 6450 3.063704 ACCATGCACCGCACCATG 61.064 61.111 0.00 0.00 43.04 3.66
6074 6451 3.063704 CACCATGCACCGCACCAT 61.064 61.111 0.00 0.00 43.04 3.55
6077 6454 3.434319 CTCCACCATGCACCGCAC 61.434 66.667 0.00 0.00 43.04 5.34
6078 6455 3.490031 AACTCCACCATGCACCGCA 62.490 57.895 0.00 0.00 44.86 5.69
6079 6456 2.672996 AACTCCACCATGCACCGC 60.673 61.111 0.00 0.00 0.00 5.68
6080 6457 2.981560 GCAACTCCACCATGCACCG 61.982 63.158 0.00 0.00 39.81 4.94
6081 6458 1.181098 AAGCAACTCCACCATGCACC 61.181 55.000 0.00 0.00 42.45 5.01
6082 6459 0.038892 CAAGCAACTCCACCATGCAC 60.039 55.000 0.00 0.00 42.45 4.57
6083 6460 1.180456 CCAAGCAACTCCACCATGCA 61.180 55.000 0.00 0.00 42.45 3.96
6084 6461 0.895100 TCCAAGCAACTCCACCATGC 60.895 55.000 0.00 0.00 40.34 4.06
6085 6462 0.883833 GTCCAAGCAACTCCACCATG 59.116 55.000 0.00 0.00 0.00 3.66
6086 6463 0.478072 TGTCCAAGCAACTCCACCAT 59.522 50.000 0.00 0.00 0.00 3.55
6087 6464 0.179020 CTGTCCAAGCAACTCCACCA 60.179 55.000 0.00 0.00 0.00 4.17
6088 6465 0.890996 CCTGTCCAAGCAACTCCACC 60.891 60.000 0.00 0.00 0.00 4.61
6089 6466 0.890996 CCCTGTCCAAGCAACTCCAC 60.891 60.000 0.00 0.00 0.00 4.02
6090 6467 1.455849 CCCTGTCCAAGCAACTCCA 59.544 57.895 0.00 0.00 0.00 3.86
6091 6468 1.303643 CCCCTGTCCAAGCAACTCC 60.304 63.158 0.00 0.00 0.00 3.85
6092 6469 1.303643 CCCCCTGTCCAAGCAACTC 60.304 63.158 0.00 0.00 0.00 3.01
6093 6470 2.846532 CCCCCTGTCCAAGCAACT 59.153 61.111 0.00 0.00 0.00 3.16
6094 6471 2.991540 GCCCCCTGTCCAAGCAAC 60.992 66.667 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.