Multiple sequence alignment - TraesCS4D01G023600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G023600 chr4D 100.000 4705 0 0 1 4705 10253979 10258683 0.000000e+00 8689.0
1 TraesCS4D01G023600 chr4D 96.154 52 1 1 4185 4235 491530502 491530553 3.020000e-12 84.2
2 TraesCS4D01G023600 chr4A 96.024 3924 118 13 260 4157 593353250 593349339 0.000000e+00 6348.0
3 TraesCS4D01G023600 chr4B 93.705 3161 116 31 255 3385 19740312 19743419 0.000000e+00 4658.0
4 TraesCS4D01G023600 chr4B 91.128 1330 78 14 3383 4705 19743500 19744796 0.000000e+00 1766.0
5 TraesCS4D01G023600 chr2B 87.500 120 8 5 125 244 139354823 139354711 1.060000e-26 132.0
6 TraesCS4D01G023600 chr6A 98.077 52 1 0 4185 4236 50040002 50039951 1.800000e-14 91.6
7 TraesCS4D01G023600 chr2A 90.141 71 6 1 4598 4667 138069735 138069805 1.800000e-14 91.6
8 TraesCS4D01G023600 chr2A 84.337 83 11 2 4598 4679 762860907 762860826 3.900000e-11 80.5
9 TraesCS4D01G023600 chr6B 85.393 89 10 2 39 125 644695580 644695493 6.480000e-14 89.8
10 TraesCS4D01G023600 chr7B 94.737 57 2 1 4181 4236 115389160 115389104 2.330000e-13 87.9
11 TraesCS4D01G023600 chr3D 85.882 85 9 3 4586 4667 28365196 28365280 2.330000e-13 87.9
12 TraesCS4D01G023600 chr3D 85.882 85 9 3 4586 4667 28368578 28368662 2.330000e-13 87.9
13 TraesCS4D01G023600 chr3D 85.882 85 9 3 4586 4667 28374371 28374455 2.330000e-13 87.9
14 TraesCS4D01G023600 chr5B 96.226 53 0 2 414 466 61800681 61800631 8.390000e-13 86.1
15 TraesCS4D01G023600 chr5B 90.566 53 1 2 414 466 62306199 62306247 3.040000e-07 67.6
16 TraesCS4D01G023600 chr2D 85.542 83 11 1 4598 4679 533781383 533781301 8.390000e-13 86.1
17 TraesCS4D01G023600 chr3B 92.982 57 2 2 4181 4236 41644949 41644894 1.090000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G023600 chr4D 10253979 10258683 4704 False 8689 8689 100.0000 1 4705 1 chr4D.!!$F1 4704
1 TraesCS4D01G023600 chr4A 593349339 593353250 3911 True 6348 6348 96.0240 260 4157 1 chr4A.!!$R1 3897
2 TraesCS4D01G023600 chr4B 19740312 19744796 4484 False 3212 4658 92.4165 255 4705 2 chr4B.!!$F1 4450

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
196 197 0.033894 TGCATGCATGGACACCTGAT 60.034 50.0 27.34 0.00 0.00 2.90 F
638 658 0.038166 TGCTTGCCTAGGTTCCAAGG 59.962 55.0 21.96 9.66 37.14 3.61 F
1437 1458 0.538118 TAGCCCACAACCGGTATGTC 59.462 55.0 8.00 3.95 0.00 3.06 F
1470 1491 0.901580 AAGCAACCAATCTGGGCCAG 60.902 55.0 28.01 28.01 43.37 4.85 F
2499 2530 1.039068 TTGCCACATTTGTCCTGGTG 58.961 50.0 0.00 0.00 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1247 1268 1.590238 CTTGACGCGAATCAAGCCTAG 59.410 52.381 21.75 4.24 46.69 3.02 R
1755 1776 4.599047 ACTCTGAGTCTGCATAATAGCC 57.401 45.455 4.06 0.00 0.00 3.93 R
3425 3549 1.896660 GCGCTGGTGACCTGGAAAA 60.897 57.895 10.61 0.00 0.00 2.29 R
3427 3551 3.241530 AGCGCTGGTGACCTGGAA 61.242 61.111 10.39 0.00 0.00 3.53 R
4413 4542 0.108207 TTTTAACCGACCCCAAGCGA 59.892 50.000 0.00 0.00 0.00 4.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.252974 AGCCCGATTTGAGTACTTGAG 57.747 47.619 0.00 0.00 0.00 3.02
21 22 2.093447 AGCCCGATTTGAGTACTTGAGG 60.093 50.000 0.00 0.00 0.00 3.86
22 23 2.354805 GCCCGATTTGAGTACTTGAGGT 60.355 50.000 0.00 0.00 0.00 3.85
23 24 3.262420 CCCGATTTGAGTACTTGAGGTG 58.738 50.000 0.00 0.00 0.00 4.00
24 25 3.056107 CCCGATTTGAGTACTTGAGGTGA 60.056 47.826 0.00 0.00 0.00 4.02
25 26 4.177026 CCGATTTGAGTACTTGAGGTGAG 58.823 47.826 0.00 0.00 0.00 3.51
26 27 3.614616 CGATTTGAGTACTTGAGGTGAGC 59.385 47.826 0.00 0.00 0.00 4.26
27 28 4.619394 CGATTTGAGTACTTGAGGTGAGCT 60.619 45.833 0.00 0.00 0.00 4.09
28 29 3.667497 TTGAGTACTTGAGGTGAGCTG 57.333 47.619 0.00 0.00 0.00 4.24
29 30 1.273606 TGAGTACTTGAGGTGAGCTGC 59.726 52.381 0.00 0.00 0.00 5.25
30 31 0.610687 AGTACTTGAGGTGAGCTGCC 59.389 55.000 0.00 0.00 0.00 4.85
31 32 0.610687 GTACTTGAGGTGAGCTGCCT 59.389 55.000 6.16 6.16 39.42 4.75
32 33 1.825474 GTACTTGAGGTGAGCTGCCTA 59.175 52.381 6.43 0.00 36.29 3.93
33 34 1.577736 ACTTGAGGTGAGCTGCCTAT 58.422 50.000 6.43 0.00 36.29 2.57
34 35 1.912043 ACTTGAGGTGAGCTGCCTATT 59.088 47.619 6.43 0.00 36.29 1.73
35 36 2.093235 ACTTGAGGTGAGCTGCCTATTC 60.093 50.000 6.43 0.00 36.29 1.75
36 37 0.833287 TGAGGTGAGCTGCCTATTCC 59.167 55.000 6.43 0.00 36.29 3.01
37 38 0.107643 GAGGTGAGCTGCCTATTCCC 59.892 60.000 6.43 0.00 36.29 3.97
38 39 1.227674 GGTGAGCTGCCTATTCCCG 60.228 63.158 0.00 0.00 0.00 5.14
39 40 1.889573 GTGAGCTGCCTATTCCCGC 60.890 63.158 0.00 0.00 0.00 6.13
40 41 2.366393 TGAGCTGCCTATTCCCGCA 61.366 57.895 0.00 0.00 0.00 5.69
41 42 1.153168 GAGCTGCCTATTCCCGCAA 60.153 57.895 0.00 0.00 33.87 4.85
42 43 0.536006 GAGCTGCCTATTCCCGCAAT 60.536 55.000 0.00 0.00 33.87 3.56
43 44 0.106519 AGCTGCCTATTCCCGCAATT 60.107 50.000 0.00 0.00 33.87 2.32
44 45 0.746659 GCTGCCTATTCCCGCAATTT 59.253 50.000 0.00 0.00 33.87 1.82
45 46 1.269257 GCTGCCTATTCCCGCAATTTC 60.269 52.381 0.00 0.00 33.87 2.17
46 47 2.301346 CTGCCTATTCCCGCAATTTCT 58.699 47.619 0.00 0.00 33.87 2.52
47 48 2.023673 TGCCTATTCCCGCAATTTCTG 58.976 47.619 0.00 0.00 30.46 3.02
48 49 2.297701 GCCTATTCCCGCAATTTCTGA 58.702 47.619 0.00 0.00 0.00 3.27
49 50 2.887152 GCCTATTCCCGCAATTTCTGAT 59.113 45.455 0.00 0.00 0.00 2.90
50 51 3.319122 GCCTATTCCCGCAATTTCTGATT 59.681 43.478 0.00 0.00 0.00 2.57
51 52 4.202151 GCCTATTCCCGCAATTTCTGATTT 60.202 41.667 0.00 0.00 0.00 2.17
52 53 5.009610 GCCTATTCCCGCAATTTCTGATTTA 59.990 40.000 0.00 0.00 0.00 1.40
53 54 6.672147 CCTATTCCCGCAATTTCTGATTTAG 58.328 40.000 0.00 0.00 0.00 1.85
54 55 4.981806 TTCCCGCAATTTCTGATTTAGG 57.018 40.909 0.00 0.00 0.00 2.69
55 56 3.287222 TCCCGCAATTTCTGATTTAGGG 58.713 45.455 0.00 0.00 37.72 3.53
56 57 3.023832 CCCGCAATTTCTGATTTAGGGT 58.976 45.455 0.00 0.00 0.00 4.34
57 58 3.447229 CCCGCAATTTCTGATTTAGGGTT 59.553 43.478 0.00 0.00 0.00 4.11
58 59 4.081697 CCCGCAATTTCTGATTTAGGGTTT 60.082 41.667 0.00 0.00 0.00 3.27
59 60 5.102313 CCGCAATTTCTGATTTAGGGTTTC 58.898 41.667 0.00 0.00 0.00 2.78
60 61 5.336372 CCGCAATTTCTGATTTAGGGTTTCA 60.336 40.000 0.00 0.00 0.00 2.69
61 62 6.332630 CGCAATTTCTGATTTAGGGTTTCAT 58.667 36.000 0.00 0.00 0.00 2.57
62 63 6.473455 CGCAATTTCTGATTTAGGGTTTCATC 59.527 38.462 0.00 0.00 0.00 2.92
63 64 7.550712 GCAATTTCTGATTTAGGGTTTCATCT 58.449 34.615 0.00 0.00 0.00 2.90
64 65 8.037166 GCAATTTCTGATTTAGGGTTTCATCTT 58.963 33.333 0.00 0.00 0.00 2.40
65 66 9.933723 CAATTTCTGATTTAGGGTTTCATCTTT 57.066 29.630 0.00 0.00 0.00 2.52
66 67 9.933723 AATTTCTGATTTAGGGTTTCATCTTTG 57.066 29.630 0.00 0.00 0.00 2.77
67 68 6.515272 TCTGATTTAGGGTTTCATCTTTGC 57.485 37.500 0.00 0.00 0.00 3.68
68 69 6.248433 TCTGATTTAGGGTTTCATCTTTGCT 58.752 36.000 0.00 0.00 0.00 3.91
69 70 6.151648 TCTGATTTAGGGTTTCATCTTTGCTG 59.848 38.462 0.00 0.00 0.00 4.41
70 71 4.519540 TTTAGGGTTTCATCTTTGCTGC 57.480 40.909 0.00 0.00 0.00 5.25
71 72 1.260544 AGGGTTTCATCTTTGCTGCC 58.739 50.000 0.00 0.00 0.00 4.85
72 73 0.247460 GGGTTTCATCTTTGCTGCCC 59.753 55.000 0.00 0.00 0.00 5.36
73 74 0.109132 GGTTTCATCTTTGCTGCCCG 60.109 55.000 0.00 0.00 0.00 6.13
74 75 0.598065 GTTTCATCTTTGCTGCCCGT 59.402 50.000 0.00 0.00 0.00 5.28
75 76 1.000274 GTTTCATCTTTGCTGCCCGTT 60.000 47.619 0.00 0.00 0.00 4.44
76 77 0.597568 TTCATCTTTGCTGCCCGTTG 59.402 50.000 0.00 0.00 0.00 4.10
77 78 1.444895 CATCTTTGCTGCCCGTTGC 60.445 57.895 0.00 0.00 41.77 4.17
86 87 2.408835 GCCCGTTGCATCAATCGG 59.591 61.111 11.06 11.06 40.77 4.18
87 88 3.110139 CCCGTTGCATCAATCGGG 58.890 61.111 17.98 17.98 44.53 5.14
88 89 1.748879 CCCGTTGCATCAATCGGGT 60.749 57.895 20.83 0.00 44.68 5.28
89 90 1.429021 CCGTTGCATCAATCGGGTG 59.571 57.895 0.00 0.00 35.80 4.61
90 91 1.429021 CGTTGCATCAATCGGGTGG 59.571 57.895 0.00 0.00 0.00 4.61
91 92 1.024046 CGTTGCATCAATCGGGTGGA 61.024 55.000 0.00 0.00 0.00 4.02
92 93 1.173043 GTTGCATCAATCGGGTGGAA 58.827 50.000 0.00 0.00 0.00 3.53
93 94 1.133025 GTTGCATCAATCGGGTGGAAG 59.867 52.381 0.00 0.00 0.00 3.46
94 95 0.617935 TGCATCAATCGGGTGGAAGA 59.382 50.000 0.00 0.00 0.00 2.87
95 96 1.303309 GCATCAATCGGGTGGAAGAG 58.697 55.000 0.00 0.00 0.00 2.85
96 97 1.407437 GCATCAATCGGGTGGAAGAGT 60.407 52.381 0.00 0.00 0.00 3.24
97 98 2.555199 CATCAATCGGGTGGAAGAGTC 58.445 52.381 0.00 0.00 0.00 3.36
98 99 1.639722 TCAATCGGGTGGAAGAGTCA 58.360 50.000 0.00 0.00 0.00 3.41
99 100 1.974957 TCAATCGGGTGGAAGAGTCAA 59.025 47.619 0.00 0.00 0.00 3.18
100 101 2.028112 TCAATCGGGTGGAAGAGTCAAG 60.028 50.000 0.00 0.00 0.00 3.02
101 102 1.645710 ATCGGGTGGAAGAGTCAAGT 58.354 50.000 0.00 0.00 0.00 3.16
102 103 0.966920 TCGGGTGGAAGAGTCAAGTC 59.033 55.000 0.00 0.00 0.00 3.01
103 104 0.037232 CGGGTGGAAGAGTCAAGTCC 60.037 60.000 0.00 0.00 0.00 3.85
104 105 1.056660 GGGTGGAAGAGTCAAGTCCA 58.943 55.000 6.21 6.21 39.14 4.02
105 106 1.630878 GGGTGGAAGAGTCAAGTCCAT 59.369 52.381 11.95 0.00 43.19 3.41
106 107 2.040412 GGGTGGAAGAGTCAAGTCCATT 59.960 50.000 11.95 0.00 43.19 3.16
107 108 3.077359 GGTGGAAGAGTCAAGTCCATTG 58.923 50.000 11.95 0.00 43.19 2.82
108 109 2.485814 GTGGAAGAGTCAAGTCCATTGC 59.514 50.000 11.95 0.00 43.19 3.56
109 110 1.734465 GGAAGAGTCAAGTCCATTGCG 59.266 52.381 0.00 0.00 38.89 4.85
110 111 2.417719 GAAGAGTCAAGTCCATTGCGT 58.582 47.619 0.00 0.00 38.89 5.24
111 112 2.550830 AGAGTCAAGTCCATTGCGTT 57.449 45.000 0.00 0.00 38.89 4.84
112 113 2.146342 AGAGTCAAGTCCATTGCGTTG 58.854 47.619 0.00 0.00 38.89 4.10
113 114 2.143122 GAGTCAAGTCCATTGCGTTGA 58.857 47.619 0.00 0.00 38.89 3.18
114 115 1.873591 AGTCAAGTCCATTGCGTTGAC 59.126 47.619 12.54 12.54 46.03 3.18
115 116 0.865111 TCAAGTCCATTGCGTTGACG 59.135 50.000 0.00 0.00 38.89 4.35
116 117 0.865111 CAAGTCCATTGCGTTGACGA 59.135 50.000 7.85 0.00 43.02 4.20
117 118 1.262950 CAAGTCCATTGCGTTGACGAA 59.737 47.619 7.85 0.00 43.02 3.85
118 119 1.588674 AGTCCATTGCGTTGACGAAA 58.411 45.000 7.85 3.21 41.72 3.46
119 120 1.263217 AGTCCATTGCGTTGACGAAAC 59.737 47.619 7.85 0.00 40.09 2.78
120 121 1.003331 GTCCATTGCGTTGACGAAACA 60.003 47.619 7.85 0.00 40.09 2.83
121 122 1.671328 TCCATTGCGTTGACGAAACAA 59.329 42.857 7.85 2.86 40.09 2.83
122 123 2.292016 TCCATTGCGTTGACGAAACAAT 59.708 40.909 7.85 5.07 40.09 2.71
123 124 2.656422 CCATTGCGTTGACGAAACAATC 59.344 45.455 7.85 0.00 40.09 2.67
124 125 3.295785 CATTGCGTTGACGAAACAATCA 58.704 40.909 7.85 0.00 40.09 2.57
125 126 2.661504 TGCGTTGACGAAACAATCAG 57.338 45.000 7.85 0.00 43.02 2.90
126 127 1.937223 TGCGTTGACGAAACAATCAGT 59.063 42.857 7.85 0.00 43.02 3.41
127 128 2.286125 TGCGTTGACGAAACAATCAGTG 60.286 45.455 7.85 0.00 43.02 3.66
128 129 2.298300 CGTTGACGAAACAATCAGTGC 58.702 47.619 0.00 0.00 43.02 4.40
129 130 2.286125 CGTTGACGAAACAATCAGTGCA 60.286 45.455 0.00 0.00 43.02 4.57
130 131 3.690422 GTTGACGAAACAATCAGTGCAA 58.310 40.909 0.00 0.00 38.75 4.08
131 132 3.607422 TGACGAAACAATCAGTGCAAG 57.393 42.857 0.00 0.00 0.00 4.01
132 133 3.202097 TGACGAAACAATCAGTGCAAGA 58.798 40.909 0.00 0.00 0.00 3.02
133 134 3.625313 TGACGAAACAATCAGTGCAAGAA 59.375 39.130 0.00 0.00 0.00 2.52
134 135 3.952535 ACGAAACAATCAGTGCAAGAAC 58.047 40.909 0.00 0.00 0.00 3.01
135 136 3.376859 ACGAAACAATCAGTGCAAGAACA 59.623 39.130 0.00 0.00 0.00 3.18
136 137 3.725740 CGAAACAATCAGTGCAAGAACAC 59.274 43.478 0.00 0.00 41.02 3.32
137 138 4.671377 GAAACAATCAGTGCAAGAACACA 58.329 39.130 0.00 0.00 43.23 3.72
138 139 3.698029 ACAATCAGTGCAAGAACACAC 57.302 42.857 0.00 0.00 43.23 3.82
143 144 1.668419 AGTGCAAGAACACACTGTCC 58.332 50.000 0.00 0.00 45.19 4.02
144 145 1.210478 AGTGCAAGAACACACTGTCCT 59.790 47.619 0.00 0.00 45.19 3.85
145 146 1.331756 GTGCAAGAACACACTGTCCTG 59.668 52.381 0.00 0.00 40.40 3.86
146 147 1.065491 TGCAAGAACACACTGTCCTGT 60.065 47.619 0.00 0.00 0.00 4.00
147 148 1.331756 GCAAGAACACACTGTCCTGTG 59.668 52.381 3.14 3.14 46.06 3.66
148 149 2.905075 CAAGAACACACTGTCCTGTGA 58.095 47.619 10.74 0.00 43.77 3.58
149 150 3.270027 CAAGAACACACTGTCCTGTGAA 58.730 45.455 10.74 0.00 43.77 3.18
150 151 2.906354 AGAACACACTGTCCTGTGAAC 58.094 47.619 10.74 0.67 43.77 3.18
151 152 2.236146 AGAACACACTGTCCTGTGAACA 59.764 45.455 10.74 0.00 43.77 3.18
152 153 2.024176 ACACACTGTCCTGTGAACAC 57.976 50.000 10.74 0.00 43.77 3.32
153 154 1.277842 ACACACTGTCCTGTGAACACA 59.722 47.619 10.74 7.42 43.77 3.72
154 155 2.092968 ACACACTGTCCTGTGAACACAT 60.093 45.455 8.09 0.00 43.77 3.21
155 156 3.133901 ACACACTGTCCTGTGAACACATA 59.866 43.478 8.09 0.00 43.77 2.29
156 157 3.494626 CACACTGTCCTGTGAACACATAC 59.505 47.826 8.09 9.96 43.77 2.39
157 158 3.133901 ACACTGTCCTGTGAACACATACA 59.866 43.478 16.51 16.51 41.01 2.29
158 159 3.494626 CACTGTCCTGTGAACACATACAC 59.505 47.826 8.09 6.21 41.01 2.90
159 160 3.133901 ACTGTCCTGTGAACACATACACA 59.866 43.478 8.09 9.80 43.31 3.72
160 161 4.202357 ACTGTCCTGTGAACACATACACAT 60.202 41.667 8.09 3.51 44.21 3.21
161 162 5.011635 ACTGTCCTGTGAACACATACACATA 59.988 40.000 8.09 0.00 44.21 2.29
162 163 5.478407 TGTCCTGTGAACACATACACATAG 58.522 41.667 8.09 0.00 44.21 2.23
163 164 5.245075 TGTCCTGTGAACACATACACATAGA 59.755 40.000 8.09 0.00 44.21 1.98
164 165 6.070824 TGTCCTGTGAACACATACACATAGAT 60.071 38.462 8.09 0.00 44.21 1.98
165 166 6.818644 GTCCTGTGAACACATACACATAGATT 59.181 38.462 8.09 0.00 44.21 2.40
166 167 7.334421 GTCCTGTGAACACATACACATAGATTT 59.666 37.037 8.09 0.00 44.21 2.17
167 168 7.882791 TCCTGTGAACACATACACATAGATTTT 59.117 33.333 8.09 0.00 44.21 1.82
168 169 7.964559 CCTGTGAACACATACACATAGATTTTG 59.035 37.037 8.09 0.00 44.21 2.44
169 170 7.304735 TGTGAACACATACACATAGATTTTGC 58.695 34.615 3.39 0.00 41.19 3.68
170 171 7.174772 TGTGAACACATACACATAGATTTTGCT 59.825 33.333 3.39 0.00 41.19 3.91
171 172 8.664798 GTGAACACATACACATAGATTTTGCTA 58.335 33.333 0.00 0.00 37.05 3.49
172 173 9.394767 TGAACACATACACATAGATTTTGCTAT 57.605 29.630 0.00 0.00 0.00 2.97
173 174 9.869844 GAACACATACACATAGATTTTGCTATC 57.130 33.333 0.00 0.00 0.00 2.08
174 175 8.383318 ACACATACACATAGATTTTGCTATCC 57.617 34.615 0.00 0.00 0.00 2.59
175 176 7.992608 ACACATACACATAGATTTTGCTATCCA 59.007 33.333 0.00 0.00 0.00 3.41
176 177 8.501580 CACATACACATAGATTTTGCTATCCAG 58.498 37.037 0.00 0.00 0.00 3.86
177 178 8.213679 ACATACACATAGATTTTGCTATCCAGT 58.786 33.333 0.00 0.00 0.00 4.00
178 179 6.932356 ACACATAGATTTTGCTATCCAGTG 57.068 37.500 0.00 0.00 32.69 3.66
179 180 5.297776 ACACATAGATTTTGCTATCCAGTGC 59.702 40.000 0.00 0.00 31.01 4.40
180 181 5.297527 CACATAGATTTTGCTATCCAGTGCA 59.702 40.000 0.00 0.00 37.42 4.57
181 182 6.016527 CACATAGATTTTGCTATCCAGTGCAT 60.017 38.462 0.00 0.00 39.07 3.96
182 183 4.913335 AGATTTTGCTATCCAGTGCATG 57.087 40.909 0.00 0.00 39.07 4.06
183 184 2.945447 TTTTGCTATCCAGTGCATGC 57.055 45.000 11.82 11.82 39.07 4.06
184 185 1.836802 TTTGCTATCCAGTGCATGCA 58.163 45.000 18.46 18.46 39.07 3.96
185 186 2.061509 TTGCTATCCAGTGCATGCAT 57.938 45.000 25.64 10.06 39.07 3.96
186 187 1.314730 TGCTATCCAGTGCATGCATG 58.685 50.000 25.64 22.70 33.94 4.06
187 188 0.596577 GCTATCCAGTGCATGCATGG 59.403 55.000 28.86 28.86 35.30 3.66
188 189 1.816572 GCTATCCAGTGCATGCATGGA 60.817 52.381 34.11 34.11 46.69 3.41
189 190 1.878088 CTATCCAGTGCATGCATGGAC 59.122 52.381 34.45 35.97 45.53 4.02
193 194 4.007457 GTGCATGCATGGACACCT 57.993 55.556 37.21 0.00 46.68 4.00
194 195 1.509463 GTGCATGCATGGACACCTG 59.491 57.895 37.21 10.69 46.68 4.00
195 196 0.961857 GTGCATGCATGGACACCTGA 60.962 55.000 37.21 2.31 46.68 3.86
196 197 0.033894 TGCATGCATGGACACCTGAT 60.034 50.000 27.34 0.00 0.00 2.90
197 198 1.108776 GCATGCATGGACACCTGATT 58.891 50.000 27.34 0.00 0.00 2.57
198 199 2.300433 GCATGCATGGACACCTGATTA 58.700 47.619 27.34 0.00 0.00 1.75
199 200 2.292569 GCATGCATGGACACCTGATTAG 59.707 50.000 27.34 0.00 0.00 1.73
200 201 3.548770 CATGCATGGACACCTGATTAGT 58.451 45.455 19.40 0.00 0.00 2.24
201 202 2.989909 TGCATGGACACCTGATTAGTG 58.010 47.619 0.00 0.00 41.15 2.74
202 203 2.571202 TGCATGGACACCTGATTAGTGA 59.429 45.455 0.00 0.00 38.63 3.41
203 204 2.939103 GCATGGACACCTGATTAGTGAC 59.061 50.000 0.00 0.00 38.63 3.67
204 205 3.619733 GCATGGACACCTGATTAGTGACA 60.620 47.826 0.00 0.00 38.63 3.58
205 206 4.774124 CATGGACACCTGATTAGTGACAT 58.226 43.478 0.00 0.00 38.63 3.06
206 207 5.684813 GCATGGACACCTGATTAGTGACATA 60.685 44.000 0.00 0.00 38.63 2.29
207 208 6.348498 CATGGACACCTGATTAGTGACATAA 58.652 40.000 0.00 0.00 38.63 1.90
208 209 5.730550 TGGACACCTGATTAGTGACATAAC 58.269 41.667 0.00 0.00 38.63 1.89
209 210 5.247337 TGGACACCTGATTAGTGACATAACA 59.753 40.000 0.00 0.00 38.63 2.41
210 211 6.170506 GGACACCTGATTAGTGACATAACAA 58.829 40.000 0.00 0.00 38.63 2.83
211 212 6.823689 GGACACCTGATTAGTGACATAACAAT 59.176 38.462 0.00 0.00 38.63 2.71
212 213 7.201644 GGACACCTGATTAGTGACATAACAATG 60.202 40.741 0.00 0.00 38.63 2.82
213 214 7.394016 ACACCTGATTAGTGACATAACAATGA 58.606 34.615 0.00 0.00 38.63 2.57
214 215 8.049117 ACACCTGATTAGTGACATAACAATGAT 58.951 33.333 0.00 0.00 38.63 2.45
215 216 8.896744 CACCTGATTAGTGACATAACAATGATT 58.103 33.333 0.00 0.00 37.42 2.57
216 217 9.466497 ACCTGATTAGTGACATAACAATGATTT 57.534 29.630 0.00 0.00 0.00 2.17
231 232 8.483307 AACAATGATTTATCTGATTGTTTGCC 57.517 30.769 12.05 0.00 43.27 4.52
232 233 7.613585 ACAATGATTTATCTGATTGTTTGCCA 58.386 30.769 0.00 0.00 35.93 4.92
233 234 7.546667 ACAATGATTTATCTGATTGTTTGCCAC 59.453 33.333 0.00 0.00 35.93 5.01
234 235 6.839124 TGATTTATCTGATTGTTTGCCACT 57.161 33.333 0.00 0.00 0.00 4.00
235 236 6.855836 TGATTTATCTGATTGTTTGCCACTC 58.144 36.000 0.00 0.00 0.00 3.51
236 237 6.660521 TGATTTATCTGATTGTTTGCCACTCT 59.339 34.615 0.00 0.00 0.00 3.24
237 238 6.899393 TTTATCTGATTGTTTGCCACTCTT 57.101 33.333 0.00 0.00 0.00 2.85
238 239 7.994425 TTTATCTGATTGTTTGCCACTCTTA 57.006 32.000 0.00 0.00 0.00 2.10
239 240 7.994425 TTATCTGATTGTTTGCCACTCTTAA 57.006 32.000 0.00 0.00 0.00 1.85
240 241 5.689383 TCTGATTGTTTGCCACTCTTAAC 57.311 39.130 0.00 0.00 0.00 2.01
241 242 5.129634 TCTGATTGTTTGCCACTCTTAACA 58.870 37.500 0.00 0.00 0.00 2.41
242 243 5.592282 TCTGATTGTTTGCCACTCTTAACAA 59.408 36.000 0.00 0.00 42.57 2.83
245 246 6.655078 ATTGTTTGCCACTCTTAACAATCT 57.345 33.333 0.00 0.00 43.81 2.40
246 247 5.437289 TGTTTGCCACTCTTAACAATCTG 57.563 39.130 0.00 0.00 0.00 2.90
247 248 5.129634 TGTTTGCCACTCTTAACAATCTGA 58.870 37.500 0.00 0.00 0.00 3.27
248 249 5.592282 TGTTTGCCACTCTTAACAATCTGAA 59.408 36.000 0.00 0.00 0.00 3.02
249 250 6.265196 TGTTTGCCACTCTTAACAATCTGAAT 59.735 34.615 0.00 0.00 0.00 2.57
250 251 5.885230 TGCCACTCTTAACAATCTGAATG 57.115 39.130 0.00 0.00 0.00 2.67
251 252 5.316167 TGCCACTCTTAACAATCTGAATGT 58.684 37.500 0.00 0.00 0.00 2.71
252 253 6.472016 TGCCACTCTTAACAATCTGAATGTA 58.528 36.000 0.00 0.00 0.00 2.29
253 254 6.371548 TGCCACTCTTAACAATCTGAATGTAC 59.628 38.462 0.00 0.00 0.00 2.90
344 352 7.064134 TGTTTCGATGTGCTACTGGTAAATTAG 59.936 37.037 0.00 0.00 0.00 1.73
348 356 7.703621 TCGATGTGCTACTGGTAAATTAGTTAC 59.296 37.037 0.00 0.00 41.32 2.50
353 361 7.329226 GTGCTACTGGTAAATTAGTTACAACGA 59.671 37.037 4.97 0.00 43.48 3.85
374 382 4.971830 CGATGGCATGTCATATTTGTTGTC 59.028 41.667 13.92 0.00 0.00 3.18
380 388 7.148171 TGGCATGTCATATTTGTTGTCGAATTA 60.148 33.333 0.00 0.00 0.00 1.40
381 389 7.376866 GGCATGTCATATTTGTTGTCGAATTAG 59.623 37.037 0.00 0.00 0.00 1.73
382 390 7.910162 GCATGTCATATTTGTTGTCGAATTAGT 59.090 33.333 0.00 0.00 0.00 2.24
383 391 9.773328 CATGTCATATTTGTTGTCGAATTAGTT 57.227 29.630 0.00 0.00 0.00 2.24
478 486 1.337118 TGAATTGAACCCTGGTTGGC 58.663 50.000 6.24 0.00 38.60 4.52
518 526 1.429463 GAGAACTTACCACCGTGCAG 58.571 55.000 0.00 0.00 0.00 4.41
532 540 1.769733 GTGCAGCATTCTTTTTGCGA 58.230 45.000 0.00 0.00 44.82 5.10
602 610 0.957888 GACTTGCTTCCTGTGGCTCC 60.958 60.000 0.00 0.00 0.00 4.70
630 650 0.602638 TTGTGTCGTGCTTGCCTAGG 60.603 55.000 3.67 3.67 0.00 3.02
633 653 0.320421 TGTCGTGCTTGCCTAGGTTC 60.320 55.000 11.31 0.00 0.00 3.62
638 658 0.038166 TGCTTGCCTAGGTTCCAAGG 59.962 55.000 21.96 9.66 37.14 3.61
660 680 1.593265 CAGCCCCTGAAACAATGCC 59.407 57.895 0.00 0.00 32.44 4.40
662 682 3.005540 GCCCCTGAAACAATGCCGG 62.006 63.158 0.00 0.00 0.00 6.13
672 692 4.129148 AATGCCGGCCTCCTTCCC 62.129 66.667 26.77 0.00 0.00 3.97
677 697 4.148825 CGGCCTCCTTCCCGTGAG 62.149 72.222 0.00 0.00 39.67 3.51
710 730 3.686726 AGTAGCTAATGCACTGTTTCAGC 59.313 43.478 0.00 0.00 42.74 4.26
711 731 2.787994 AGCTAATGCACTGTTTCAGCT 58.212 42.857 0.00 0.00 42.74 4.24
716 736 2.330440 TGCACTGTTTCAGCTTCAGA 57.670 45.000 10.57 0.00 34.37 3.27
724 744 5.163301 ACTGTTTCAGCTTCAGAGAGGTTTA 60.163 40.000 10.57 0.00 34.37 2.01
787 807 1.066430 TCTATCTGTTGGCACCGTTCC 60.066 52.381 0.00 0.00 0.00 3.62
1026 1047 2.807967 TCAACCTTCTGTCATTCTTGCG 59.192 45.455 0.00 0.00 0.00 4.85
1247 1268 9.816354 AACAAATAAATATTGTAGACCAATGCC 57.184 29.630 0.00 0.00 43.63 4.40
1248 1269 9.200817 ACAAATAAATATTGTAGACCAATGCCT 57.799 29.630 0.00 0.00 43.63 4.75
1262 1283 0.882042 ATGCCTAGGCTTGATTCGCG 60.882 55.000 33.07 0.00 42.51 5.87
1317 1338 1.369091 CGTGTGCCTGTTGATAGCCC 61.369 60.000 0.00 0.00 0.00 5.19
1437 1458 0.538118 TAGCCCACAACCGGTATGTC 59.462 55.000 8.00 3.95 0.00 3.06
1438 1459 2.104253 GCCCACAACCGGTATGTCG 61.104 63.158 8.00 7.51 0.00 4.35
1470 1491 0.901580 AAGCAACCAATCTGGGCCAG 60.902 55.000 28.01 28.01 43.37 4.85
1755 1776 5.200483 TCCAAAGCAAACCCATCTATAAGG 58.800 41.667 0.00 0.00 0.00 2.69
2499 2530 1.039068 TTGCCACATTTGTCCTGGTG 58.961 50.000 0.00 0.00 0.00 4.17
2637 2668 3.064207 CAGCTGCGAGTTGGTAAGTTAA 58.936 45.455 0.00 0.00 0.00 2.01
2646 2677 8.952278 TGCGAGTTGGTAAGTTAAATATTTCAT 58.048 29.630 3.39 0.00 0.00 2.57
3027 3060 9.831682 TGTGACCCTAACAGGTATATAATGATA 57.168 33.333 3.78 0.00 41.42 2.15
3059 3092 3.389925 TTTTCGCTTTCCCGACTCTTA 57.610 42.857 0.00 0.00 36.90 2.10
3073 3106 7.490000 TCCCGACTCTTATAAATGTCTTCTTC 58.510 38.462 12.65 0.00 0.00 2.87
3425 3549 6.990349 CACTAAAACTATGTGGGGTATTCGAT 59.010 38.462 0.00 0.00 0.00 3.59
3427 3551 8.050930 ACTAAAACTATGTGGGGTATTCGATTT 58.949 33.333 0.00 0.00 0.00 2.17
3473 3597 3.368531 GGGACTGCGTTTTCTCAGTAGAT 60.369 47.826 0.00 0.00 44.52 1.98
3495 3619 5.895636 TGGTGCTTATTTGATAACAGGTG 57.104 39.130 0.00 0.00 0.00 4.00
3533 3657 1.375098 GGCACTGCTCATCTTCCTGC 61.375 60.000 0.00 0.00 0.00 4.85
3553 3677 5.124776 CCTGCCTATTCACGATTTAAAACCA 59.875 40.000 0.00 0.00 0.00 3.67
3554 3678 6.349777 CCTGCCTATTCACGATTTAAAACCAA 60.350 38.462 0.00 0.00 0.00 3.67
3759 3884 2.638556 ATCTCTGTCGGTTCGAACAG 57.361 50.000 28.24 24.42 37.72 3.16
3761 3886 0.318699 CTCTGTCGGTTCGAACAGCA 60.319 55.000 28.24 22.47 37.72 4.41
3789 3914 3.604582 GGTGCTCTGCTAGATTTTCAGT 58.395 45.455 0.00 0.00 0.00 3.41
3848 3973 1.938585 TTGCTGTAGTGCTAGGACCT 58.061 50.000 11.20 0.00 0.00 3.85
3894 4023 4.992740 TTTGGGGGCTGCGCACAT 62.993 61.111 22.67 0.00 30.93 3.21
3910 4039 4.438065 GCGCACATGTGATTTGTATGGTTA 60.438 41.667 29.80 0.00 0.00 2.85
3911 4040 5.635866 CGCACATGTGATTTGTATGGTTAA 58.364 37.500 29.80 0.00 0.00 2.01
3912 4041 5.511377 CGCACATGTGATTTGTATGGTTAAC 59.489 40.000 29.80 4.56 0.00 2.01
3914 4043 7.090173 GCACATGTGATTTGTATGGTTAACTT 58.910 34.615 29.80 0.00 0.00 2.66
3915 4044 7.062138 GCACATGTGATTTGTATGGTTAACTTG 59.938 37.037 29.80 0.00 0.00 3.16
3927 4056 4.880759 TGGTTAACTTGCATTGTTGGATG 58.119 39.130 13.66 0.00 0.00 3.51
4026 4155 2.283351 CGACGTCGACTGTTTTTCCTTT 59.717 45.455 33.35 0.00 43.02 3.11
4050 4179 6.560253 TGGTTCTTTGCTATGTTCTTCTTC 57.440 37.500 0.00 0.00 0.00 2.87
4135 4264 2.239654 AGCAAGGCAGCCACTATTTAGA 59.760 45.455 15.80 0.00 34.23 2.10
4166 4295 6.909550 TTTTGGTGGTTTATGTCATAAGCT 57.090 33.333 16.22 0.00 0.00 3.74
4171 4300 4.035675 GTGGTTTATGTCATAAGCTGCCTC 59.964 45.833 16.22 9.88 0.00 4.70
4202 4331 6.817184 AGTTTCTTTTAAGGGAAAGCCTTTC 58.183 36.000 8.72 8.72 36.73 2.62
4238 4367 5.934625 TCTCAGCCAAAAGAGTTACATCTTC 59.065 40.000 0.00 0.00 38.59 2.87
4288 4417 5.755849 AGAATCAGACGGATAAAATTGGGT 58.244 37.500 0.00 0.00 34.28 4.51
4291 4420 3.264706 TCAGACGGATAAAATTGGGTGGA 59.735 43.478 0.00 0.00 0.00 4.02
4316 4445 3.831911 TCCATCCCAAACAAAATCAGACC 59.168 43.478 0.00 0.00 0.00 3.85
4413 4542 9.703677 TTATTTTAGAAACCGATCCCCTTATTT 57.296 29.630 0.00 0.00 0.00 1.40
4425 4554 1.014352 CCTTATTTCGCTTGGGGTCG 58.986 55.000 0.00 0.00 0.00 4.79
4435 4564 1.905637 CTTGGGGTCGGTTAAAAGCT 58.094 50.000 0.00 0.00 0.00 3.74
4480 4609 2.289820 CGAGAGATGGTGCATTTGGATG 59.710 50.000 0.00 0.00 36.32 3.51
4500 4629 5.940470 GGATGCGGTTATTCCAGAGATAAAT 59.060 40.000 0.00 0.00 35.57 1.40
4511 4640 2.476619 CAGAGATAAATAACGCCCGCAG 59.523 50.000 0.00 0.00 0.00 5.18
4516 4645 0.722848 AAATAACGCCCGCAGTAACG 59.277 50.000 0.00 0.00 0.00 3.18
4535 4664 3.104512 ACGGTATCCATTTCTGAGTCCA 58.895 45.455 0.00 0.00 0.00 4.02
4536 4665 3.133003 ACGGTATCCATTTCTGAGTCCAG 59.867 47.826 0.00 0.00 41.74 3.86
4553 4682 1.341531 CCAGGATCATCTACACCCGAC 59.658 57.143 0.00 0.00 0.00 4.79
4564 4693 1.080298 CACCCGACGAACAGTACCC 60.080 63.158 0.00 0.00 0.00 3.69
4568 4697 1.540797 CCCGACGAACAGTACCCAAAA 60.541 52.381 0.00 0.00 0.00 2.44
4625 4760 1.800805 AGATGTTTCAGTGCGTGAGG 58.199 50.000 0.00 0.00 36.21 3.86
4660 4795 2.508891 CGCGTTCGGACATCTGAGC 61.509 63.158 0.00 0.00 32.05 4.26
4668 4803 0.248990 GGACATCTGAGCAGCTCTCG 60.249 60.000 23.15 13.93 44.86 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.093447 CCTCAAGTACTCAAATCGGGCT 60.093 50.000 0.00 0.00 0.00 5.19
1 2 2.280628 CCTCAAGTACTCAAATCGGGC 58.719 52.381 0.00 0.00 0.00 6.13
2 3 3.056107 TCACCTCAAGTACTCAAATCGGG 60.056 47.826 0.00 0.00 0.00 5.14
3 4 4.177026 CTCACCTCAAGTACTCAAATCGG 58.823 47.826 0.00 0.00 0.00 4.18
4 5 3.614616 GCTCACCTCAAGTACTCAAATCG 59.385 47.826 0.00 0.00 0.00 3.34
5 6 4.629200 CAGCTCACCTCAAGTACTCAAATC 59.371 45.833 0.00 0.00 0.00 2.17
6 7 4.573900 CAGCTCACCTCAAGTACTCAAAT 58.426 43.478 0.00 0.00 0.00 2.32
7 8 3.803715 GCAGCTCACCTCAAGTACTCAAA 60.804 47.826 0.00 0.00 0.00 2.69
8 9 2.289072 GCAGCTCACCTCAAGTACTCAA 60.289 50.000 0.00 0.00 0.00 3.02
9 10 1.273606 GCAGCTCACCTCAAGTACTCA 59.726 52.381 0.00 0.00 0.00 3.41
10 11 1.404851 GGCAGCTCACCTCAAGTACTC 60.405 57.143 0.00 0.00 0.00 2.59
11 12 0.610687 GGCAGCTCACCTCAAGTACT 59.389 55.000 0.00 0.00 0.00 2.73
12 13 0.610687 AGGCAGCTCACCTCAAGTAC 59.389 55.000 0.00 0.00 28.76 2.73
13 14 2.231716 TAGGCAGCTCACCTCAAGTA 57.768 50.000 8.12 0.00 38.81 2.24
14 15 1.577736 ATAGGCAGCTCACCTCAAGT 58.422 50.000 8.12 0.00 38.81 3.16
15 16 2.559440 GAATAGGCAGCTCACCTCAAG 58.441 52.381 8.12 0.00 38.81 3.02
16 17 1.210478 GGAATAGGCAGCTCACCTCAA 59.790 52.381 8.12 0.00 38.81 3.02
17 18 0.833287 GGAATAGGCAGCTCACCTCA 59.167 55.000 8.12 0.00 38.81 3.86
18 19 0.107643 GGGAATAGGCAGCTCACCTC 59.892 60.000 8.12 0.00 38.81 3.85
19 20 1.690219 CGGGAATAGGCAGCTCACCT 61.690 60.000 9.72 9.72 41.57 4.00
20 21 1.227674 CGGGAATAGGCAGCTCACC 60.228 63.158 0.00 0.00 0.00 4.02
21 22 1.889573 GCGGGAATAGGCAGCTCAC 60.890 63.158 0.00 0.00 0.00 3.51
22 23 1.909459 TTGCGGGAATAGGCAGCTCA 61.909 55.000 0.00 0.00 40.75 4.26
23 24 0.536006 ATTGCGGGAATAGGCAGCTC 60.536 55.000 0.00 0.00 40.75 4.09
24 25 0.106519 AATTGCGGGAATAGGCAGCT 60.107 50.000 0.00 0.00 40.75 4.24
25 26 0.746659 AAATTGCGGGAATAGGCAGC 59.253 50.000 0.00 0.00 40.75 5.25
26 27 2.033801 CAGAAATTGCGGGAATAGGCAG 59.966 50.000 0.00 0.00 40.75 4.85
27 28 2.023673 CAGAAATTGCGGGAATAGGCA 58.976 47.619 0.00 0.00 37.39 4.75
28 29 2.297701 TCAGAAATTGCGGGAATAGGC 58.702 47.619 0.00 0.00 0.00 3.93
29 30 5.520376 AAATCAGAAATTGCGGGAATAGG 57.480 39.130 0.00 0.00 0.00 2.57
30 31 6.294176 CCCTAAATCAGAAATTGCGGGAATAG 60.294 42.308 0.00 0.00 0.00 1.73
31 32 5.534654 CCCTAAATCAGAAATTGCGGGAATA 59.465 40.000 0.00 0.00 0.00 1.75
32 33 4.342092 CCCTAAATCAGAAATTGCGGGAAT 59.658 41.667 0.00 0.00 0.00 3.01
33 34 3.699038 CCCTAAATCAGAAATTGCGGGAA 59.301 43.478 0.00 0.00 0.00 3.97
34 35 3.287222 CCCTAAATCAGAAATTGCGGGA 58.713 45.455 0.00 0.00 0.00 5.14
35 36 3.023832 ACCCTAAATCAGAAATTGCGGG 58.976 45.455 0.00 0.00 35.32 6.13
36 37 4.718940 AACCCTAAATCAGAAATTGCGG 57.281 40.909 0.00 0.00 0.00 5.69
37 38 5.708948 TGAAACCCTAAATCAGAAATTGCG 58.291 37.500 0.00 0.00 0.00 4.85
38 39 7.550712 AGATGAAACCCTAAATCAGAAATTGC 58.449 34.615 0.00 0.00 0.00 3.56
39 40 9.933723 AAAGATGAAACCCTAAATCAGAAATTG 57.066 29.630 0.00 0.00 0.00 2.32
40 41 9.933723 CAAAGATGAAACCCTAAATCAGAAATT 57.066 29.630 0.00 0.00 0.00 1.82
41 42 8.037166 GCAAAGATGAAACCCTAAATCAGAAAT 58.963 33.333 0.00 0.00 0.00 2.17
42 43 7.233348 AGCAAAGATGAAACCCTAAATCAGAAA 59.767 33.333 0.00 0.00 0.00 2.52
43 44 6.721208 AGCAAAGATGAAACCCTAAATCAGAA 59.279 34.615 0.00 0.00 0.00 3.02
44 45 6.151648 CAGCAAAGATGAAACCCTAAATCAGA 59.848 38.462 0.00 0.00 0.00 3.27
45 46 6.327934 CAGCAAAGATGAAACCCTAAATCAG 58.672 40.000 0.00 0.00 0.00 2.90
46 47 5.336690 GCAGCAAAGATGAAACCCTAAATCA 60.337 40.000 0.00 0.00 0.00 2.57
47 48 5.105063 GCAGCAAAGATGAAACCCTAAATC 58.895 41.667 0.00 0.00 0.00 2.17
48 49 4.081476 GGCAGCAAAGATGAAACCCTAAAT 60.081 41.667 0.00 0.00 0.00 1.40
49 50 3.258123 GGCAGCAAAGATGAAACCCTAAA 59.742 43.478 0.00 0.00 0.00 1.85
50 51 2.825532 GGCAGCAAAGATGAAACCCTAA 59.174 45.455 0.00 0.00 0.00 2.69
51 52 2.446435 GGCAGCAAAGATGAAACCCTA 58.554 47.619 0.00 0.00 0.00 3.53
52 53 1.260544 GGCAGCAAAGATGAAACCCT 58.739 50.000 0.00 0.00 0.00 4.34
53 54 0.247460 GGGCAGCAAAGATGAAACCC 59.753 55.000 0.00 0.00 0.00 4.11
54 55 0.109132 CGGGCAGCAAAGATGAAACC 60.109 55.000 0.00 0.00 0.00 3.27
55 56 0.598065 ACGGGCAGCAAAGATGAAAC 59.402 50.000 0.00 0.00 0.00 2.78
56 57 1.000385 CAACGGGCAGCAAAGATGAAA 60.000 47.619 0.00 0.00 0.00 2.69
57 58 0.597568 CAACGGGCAGCAAAGATGAA 59.402 50.000 0.00 0.00 0.00 2.57
58 59 1.865788 GCAACGGGCAGCAAAGATGA 61.866 55.000 0.00 0.00 43.97 2.92
59 60 1.444895 GCAACGGGCAGCAAAGATG 60.445 57.895 0.00 0.00 43.97 2.90
60 61 2.964978 GCAACGGGCAGCAAAGAT 59.035 55.556 0.00 0.00 43.97 2.40
69 70 2.408835 CCGATTGATGCAACGGGC 59.591 61.111 0.00 0.00 45.13 6.13
70 71 3.110139 CCCGATTGATGCAACGGG 58.890 61.111 18.54 18.54 44.53 5.28
71 72 1.429021 CACCCGATTGATGCAACGG 59.571 57.895 0.00 1.34 37.58 4.44
72 73 1.024046 TCCACCCGATTGATGCAACG 61.024 55.000 0.00 0.00 0.00 4.10
73 74 1.133025 CTTCCACCCGATTGATGCAAC 59.867 52.381 0.00 0.00 0.00 4.17
74 75 1.004161 TCTTCCACCCGATTGATGCAA 59.996 47.619 0.00 0.00 0.00 4.08
75 76 0.617935 TCTTCCACCCGATTGATGCA 59.382 50.000 0.00 0.00 0.00 3.96
76 77 1.303309 CTCTTCCACCCGATTGATGC 58.697 55.000 0.00 0.00 0.00 3.91
77 78 2.093500 TGACTCTTCCACCCGATTGATG 60.093 50.000 0.00 0.00 0.00 3.07
78 79 2.187958 TGACTCTTCCACCCGATTGAT 58.812 47.619 0.00 0.00 0.00 2.57
79 80 1.639722 TGACTCTTCCACCCGATTGA 58.360 50.000 0.00 0.00 0.00 2.57
80 81 2.289694 ACTTGACTCTTCCACCCGATTG 60.290 50.000 0.00 0.00 0.00 2.67
81 82 1.978580 ACTTGACTCTTCCACCCGATT 59.021 47.619 0.00 0.00 0.00 3.34
82 83 1.550976 GACTTGACTCTTCCACCCGAT 59.449 52.381 0.00 0.00 0.00 4.18
83 84 0.966920 GACTTGACTCTTCCACCCGA 59.033 55.000 0.00 0.00 0.00 5.14
84 85 0.037232 GGACTTGACTCTTCCACCCG 60.037 60.000 0.00 0.00 0.00 5.28
85 86 1.056660 TGGACTTGACTCTTCCACCC 58.943 55.000 0.00 0.00 34.35 4.61
86 87 3.077359 CAATGGACTTGACTCTTCCACC 58.923 50.000 0.00 0.00 42.26 4.61
87 88 2.485814 GCAATGGACTTGACTCTTCCAC 59.514 50.000 0.00 0.00 42.26 4.02
88 89 2.783135 GCAATGGACTTGACTCTTCCA 58.217 47.619 0.00 0.00 43.60 3.53
89 90 1.734465 CGCAATGGACTTGACTCTTCC 59.266 52.381 0.00 0.00 36.97 3.46
90 91 2.417719 ACGCAATGGACTTGACTCTTC 58.582 47.619 0.00 0.00 36.97 2.87
91 92 2.549754 CAACGCAATGGACTTGACTCTT 59.450 45.455 0.00 0.00 36.97 2.85
92 93 2.146342 CAACGCAATGGACTTGACTCT 58.854 47.619 0.00 0.00 36.97 3.24
93 94 2.096218 GTCAACGCAATGGACTTGACTC 60.096 50.000 4.55 0.00 39.52 3.36
94 95 1.873591 GTCAACGCAATGGACTTGACT 59.126 47.619 4.55 0.00 39.52 3.41
95 96 1.398451 CGTCAACGCAATGGACTTGAC 60.398 52.381 0.00 0.00 39.33 3.18
96 97 0.865111 CGTCAACGCAATGGACTTGA 59.135 50.000 0.00 0.00 36.97 3.02
97 98 0.865111 TCGTCAACGCAATGGACTTG 59.135 50.000 0.00 0.00 39.60 3.16
98 99 1.588674 TTCGTCAACGCAATGGACTT 58.411 45.000 0.00 0.00 39.60 3.01
99 100 1.263217 GTTTCGTCAACGCAATGGACT 59.737 47.619 0.00 0.00 39.60 3.85
100 101 1.003331 TGTTTCGTCAACGCAATGGAC 60.003 47.619 0.00 0.00 38.36 4.02
101 102 1.300481 TGTTTCGTCAACGCAATGGA 58.700 45.000 0.00 0.00 38.36 3.41
102 103 2.112475 TTGTTTCGTCAACGCAATGG 57.888 45.000 0.00 0.00 38.36 3.16
103 104 3.295785 TGATTGTTTCGTCAACGCAATG 58.704 40.909 10.26 0.00 38.36 2.82
104 105 3.003275 ACTGATTGTTTCGTCAACGCAAT 59.997 39.130 6.59 6.59 38.36 3.56
105 106 2.353269 ACTGATTGTTTCGTCAACGCAA 59.647 40.909 0.00 0.00 38.36 4.85
106 107 1.937223 ACTGATTGTTTCGTCAACGCA 59.063 42.857 0.00 0.00 38.36 5.24
107 108 2.298300 CACTGATTGTTTCGTCAACGC 58.702 47.619 0.00 0.00 38.36 4.84
108 109 2.286125 TGCACTGATTGTTTCGTCAACG 60.286 45.455 0.00 0.00 38.36 4.10
109 110 3.332761 TGCACTGATTGTTTCGTCAAC 57.667 42.857 0.00 0.00 35.71 3.18
110 111 3.625313 TCTTGCACTGATTGTTTCGTCAA 59.375 39.130 0.00 0.00 0.00 3.18
111 112 3.202097 TCTTGCACTGATTGTTTCGTCA 58.798 40.909 0.00 0.00 0.00 4.35
112 113 3.878086 TCTTGCACTGATTGTTTCGTC 57.122 42.857 0.00 0.00 0.00 4.20
113 114 3.376859 TGTTCTTGCACTGATTGTTTCGT 59.623 39.130 0.00 0.00 0.00 3.85
114 115 3.725740 GTGTTCTTGCACTGATTGTTTCG 59.274 43.478 0.00 0.00 36.51 3.46
115 116 4.500477 GTGTGTTCTTGCACTGATTGTTTC 59.500 41.667 0.00 0.00 39.89 2.78
116 117 4.158394 AGTGTGTTCTTGCACTGATTGTTT 59.842 37.500 0.00 0.00 43.45 2.83
117 118 3.696051 AGTGTGTTCTTGCACTGATTGTT 59.304 39.130 0.00 0.00 43.45 2.83
118 119 3.282021 AGTGTGTTCTTGCACTGATTGT 58.718 40.909 0.00 0.00 43.45 2.71
119 120 3.976793 AGTGTGTTCTTGCACTGATTG 57.023 42.857 0.00 0.00 43.45 2.67
124 125 1.210478 AGGACAGTGTGTTCTTGCACT 59.790 47.619 0.00 0.00 45.69 4.40
125 126 1.331756 CAGGACAGTGTGTTCTTGCAC 59.668 52.381 0.00 0.00 32.85 4.57
126 127 1.065491 ACAGGACAGTGTGTTCTTGCA 60.065 47.619 0.00 0.00 32.85 4.08
127 128 1.331756 CACAGGACAGTGTGTTCTTGC 59.668 52.381 0.00 0.00 42.52 4.01
128 129 2.905075 TCACAGGACAGTGTGTTCTTG 58.095 47.619 0.00 0.00 46.70 3.02
129 130 3.270877 GTTCACAGGACAGTGTGTTCTT 58.729 45.455 0.00 0.00 46.70 2.52
130 131 2.236146 TGTTCACAGGACAGTGTGTTCT 59.764 45.455 0.00 0.00 46.70 3.01
131 132 2.351726 GTGTTCACAGGACAGTGTGTTC 59.648 50.000 0.00 0.00 46.70 3.18
132 133 2.290008 TGTGTTCACAGGACAGTGTGTT 60.290 45.455 0.00 0.00 46.70 3.32
133 134 1.277842 TGTGTTCACAGGACAGTGTGT 59.722 47.619 0.00 0.00 46.70 3.72
135 136 3.133901 TGTATGTGTTCACAGGACAGTGT 59.866 43.478 14.97 0.00 40.37 3.55
136 137 3.494626 GTGTATGTGTTCACAGGACAGTG 59.505 47.826 17.68 0.00 40.85 3.66
137 138 3.133901 TGTGTATGTGTTCACAGGACAGT 59.866 43.478 17.68 2.90 39.23 3.55
138 139 3.727726 TGTGTATGTGTTCACAGGACAG 58.272 45.455 17.68 0.00 39.23 3.51
139 140 3.828875 TGTGTATGTGTTCACAGGACA 57.171 42.857 14.97 14.97 39.23 4.02
140 141 5.720202 TCTATGTGTATGTGTTCACAGGAC 58.280 41.667 11.24 11.34 45.56 3.85
141 142 5.993748 TCTATGTGTATGTGTTCACAGGA 57.006 39.130 11.24 0.00 45.56 3.86
142 143 7.615582 AAATCTATGTGTATGTGTTCACAGG 57.384 36.000 11.24 0.00 45.56 4.00
143 144 7.482743 GCAAAATCTATGTGTATGTGTTCACAG 59.517 37.037 11.24 0.00 45.56 3.66
144 145 7.174772 AGCAAAATCTATGTGTATGTGTTCACA 59.825 33.333 8.09 8.09 46.23 3.58
145 146 7.530010 AGCAAAATCTATGTGTATGTGTTCAC 58.470 34.615 0.00 0.00 35.43 3.18
146 147 7.686438 AGCAAAATCTATGTGTATGTGTTCA 57.314 32.000 0.00 0.00 0.00 3.18
147 148 9.869844 GATAGCAAAATCTATGTGTATGTGTTC 57.130 33.333 0.00 0.00 29.93 3.18
148 149 8.840321 GGATAGCAAAATCTATGTGTATGTGTT 58.160 33.333 0.00 0.00 29.93 3.32
149 150 7.992608 TGGATAGCAAAATCTATGTGTATGTGT 59.007 33.333 0.00 0.00 29.93 3.72
150 151 8.382030 TGGATAGCAAAATCTATGTGTATGTG 57.618 34.615 0.00 0.00 29.93 3.21
151 152 8.213679 ACTGGATAGCAAAATCTATGTGTATGT 58.786 33.333 0.00 0.00 29.93 2.29
152 153 8.501580 CACTGGATAGCAAAATCTATGTGTATG 58.498 37.037 0.00 0.00 29.93 2.39
153 154 7.173907 GCACTGGATAGCAAAATCTATGTGTAT 59.826 37.037 0.00 0.00 29.93 2.29
154 155 6.483307 GCACTGGATAGCAAAATCTATGTGTA 59.517 38.462 0.00 0.00 29.93 2.90
155 156 5.297776 GCACTGGATAGCAAAATCTATGTGT 59.702 40.000 0.00 0.00 29.93 3.72
156 157 5.297527 TGCACTGGATAGCAAAATCTATGTG 59.702 40.000 0.00 0.00 37.90 3.21
157 158 5.439721 TGCACTGGATAGCAAAATCTATGT 58.560 37.500 0.00 0.00 37.90 2.29
158 159 6.379386 CATGCACTGGATAGCAAAATCTATG 58.621 40.000 0.00 0.00 44.88 2.23
159 160 5.048224 GCATGCACTGGATAGCAAAATCTAT 60.048 40.000 14.21 0.00 44.88 1.98
160 161 4.276678 GCATGCACTGGATAGCAAAATCTA 59.723 41.667 14.21 0.00 44.88 1.98
161 162 3.067742 GCATGCACTGGATAGCAAAATCT 59.932 43.478 14.21 0.00 44.88 2.40
162 163 3.181484 TGCATGCACTGGATAGCAAAATC 60.181 43.478 18.46 0.00 44.88 2.17
163 164 2.761767 TGCATGCACTGGATAGCAAAAT 59.238 40.909 18.46 0.00 44.88 1.82
164 165 2.169330 TGCATGCACTGGATAGCAAAA 58.831 42.857 18.46 0.00 44.88 2.44
165 166 1.836802 TGCATGCACTGGATAGCAAA 58.163 45.000 18.46 0.00 44.88 3.68
166 167 1.679153 CATGCATGCACTGGATAGCAA 59.321 47.619 25.37 0.00 44.88 3.91
167 168 1.314730 CATGCATGCACTGGATAGCA 58.685 50.000 25.37 9.06 45.92 3.49
168 169 0.596577 CCATGCATGCACTGGATAGC 59.403 55.000 30.01 0.99 33.59 2.97
169 170 1.878088 GTCCATGCATGCACTGGATAG 59.122 52.381 34.34 18.65 36.65 2.08
170 171 1.212441 TGTCCATGCATGCACTGGATA 59.788 47.619 34.34 31.22 36.65 2.59
171 172 0.033894 TGTCCATGCATGCACTGGAT 60.034 50.000 34.34 17.15 36.65 3.41
172 173 0.961857 GTGTCCATGCATGCACTGGA 60.962 55.000 31.24 31.24 34.06 3.86
173 174 1.509463 GTGTCCATGCATGCACTGG 59.491 57.895 28.86 28.86 0.00 4.00
174 175 0.963856 AGGTGTCCATGCATGCACTG 60.964 55.000 25.37 20.62 32.90 3.66
175 176 0.963856 CAGGTGTCCATGCATGCACT 60.964 55.000 25.37 10.94 32.90 4.40
176 177 0.961857 TCAGGTGTCCATGCATGCAC 60.962 55.000 25.37 22.00 0.00 4.57
177 178 0.033894 ATCAGGTGTCCATGCATGCA 60.034 50.000 25.04 25.04 0.00 3.96
178 179 1.108776 AATCAGGTGTCCATGCATGC 58.891 50.000 21.69 11.82 0.00 4.06
179 180 3.314357 CACTAATCAGGTGTCCATGCATG 59.686 47.826 20.19 20.19 0.00 4.06
180 181 3.200605 TCACTAATCAGGTGTCCATGCAT 59.799 43.478 0.00 0.00 36.25 3.96
181 182 2.571202 TCACTAATCAGGTGTCCATGCA 59.429 45.455 0.00 0.00 36.25 3.96
182 183 2.939103 GTCACTAATCAGGTGTCCATGC 59.061 50.000 0.00 0.00 36.25 4.06
183 184 4.206477 TGTCACTAATCAGGTGTCCATG 57.794 45.455 0.00 0.00 36.25 3.66
184 185 6.070251 TGTTATGTCACTAATCAGGTGTCCAT 60.070 38.462 0.00 0.00 36.25 3.41
185 186 5.247337 TGTTATGTCACTAATCAGGTGTCCA 59.753 40.000 0.00 0.00 36.25 4.02
186 187 5.730550 TGTTATGTCACTAATCAGGTGTCC 58.269 41.667 0.00 0.00 36.25 4.02
187 188 7.549134 TCATTGTTATGTCACTAATCAGGTGTC 59.451 37.037 0.00 0.00 36.25 3.67
188 189 7.394016 TCATTGTTATGTCACTAATCAGGTGT 58.606 34.615 0.00 0.00 36.25 4.16
189 190 7.848223 TCATTGTTATGTCACTAATCAGGTG 57.152 36.000 0.00 0.00 36.17 4.00
190 191 9.466497 AAATCATTGTTATGTCACTAATCAGGT 57.534 29.630 0.00 0.00 33.34 4.00
205 206 9.585099 GGCAAACAATCAGATAAATCATTGTTA 57.415 29.630 15.91 0.00 44.76 2.41
206 207 8.095792 TGGCAAACAATCAGATAAATCATTGTT 58.904 29.630 12.27 12.27 46.53 2.83
207 208 7.546667 GTGGCAAACAATCAGATAAATCATTGT 59.453 33.333 0.00 3.89 40.43 2.71
208 209 7.762615 AGTGGCAAACAATCAGATAAATCATTG 59.237 33.333 0.00 2.93 33.27 2.82
209 210 7.844009 AGTGGCAAACAATCAGATAAATCATT 58.156 30.769 0.00 0.00 0.00 2.57
210 211 7.341256 AGAGTGGCAAACAATCAGATAAATCAT 59.659 33.333 0.00 0.00 46.19 2.45
211 212 6.660521 AGAGTGGCAAACAATCAGATAAATCA 59.339 34.615 0.00 0.00 46.19 2.57
212 213 7.093322 AGAGTGGCAAACAATCAGATAAATC 57.907 36.000 0.00 0.00 46.19 2.17
213 214 7.472334 AAGAGTGGCAAACAATCAGATAAAT 57.528 32.000 0.00 0.00 46.19 1.40
214 215 6.899393 AAGAGTGGCAAACAATCAGATAAA 57.101 33.333 0.00 0.00 46.19 1.40
215 216 7.446931 TGTTAAGAGTGGCAAACAATCAGATAA 59.553 33.333 0.00 0.00 46.19 1.75
216 217 6.939730 TGTTAAGAGTGGCAAACAATCAGATA 59.060 34.615 0.00 0.00 46.19 1.98
217 218 5.769662 TGTTAAGAGTGGCAAACAATCAGAT 59.230 36.000 0.00 0.00 46.19 2.90
218 219 5.129634 TGTTAAGAGTGGCAAACAATCAGA 58.870 37.500 0.00 0.00 46.19 3.27
219 220 5.437289 TGTTAAGAGTGGCAAACAATCAG 57.563 39.130 0.00 0.00 46.19 2.90
220 221 5.843673 TTGTTAAGAGTGGCAAACAATCA 57.156 34.783 9.68 0.00 46.19 2.57
223 224 5.592282 TCAGATTGTTAAGAGTGGCAAACAA 59.408 36.000 14.65 14.65 43.63 2.83
224 225 5.129634 TCAGATTGTTAAGAGTGGCAAACA 58.870 37.500 0.00 0.00 0.00 2.83
225 226 5.689383 TCAGATTGTTAAGAGTGGCAAAC 57.311 39.130 0.00 0.00 0.00 2.93
226 227 6.265196 ACATTCAGATTGTTAAGAGTGGCAAA 59.735 34.615 0.00 0.00 0.00 3.68
227 228 5.769662 ACATTCAGATTGTTAAGAGTGGCAA 59.230 36.000 0.00 0.00 0.00 4.52
228 229 5.316167 ACATTCAGATTGTTAAGAGTGGCA 58.684 37.500 0.00 0.00 0.00 4.92
229 230 5.886960 ACATTCAGATTGTTAAGAGTGGC 57.113 39.130 0.00 0.00 0.00 5.01
230 231 9.823647 ATAGTACATTCAGATTGTTAAGAGTGG 57.176 33.333 3.31 0.00 0.00 4.00
239 240 9.712305 GCCTACATAATAGTACATTCAGATTGT 57.288 33.333 3.50 3.50 0.00 2.71
240 241 9.935241 AGCCTACATAATAGTACATTCAGATTG 57.065 33.333 0.00 0.00 0.00 2.67
243 244 9.368416 AGAAGCCTACATAATAGTACATTCAGA 57.632 33.333 0.00 0.00 0.00 3.27
244 245 9.632807 GAGAAGCCTACATAATAGTACATTCAG 57.367 37.037 0.00 0.00 0.00 3.02
245 246 9.368416 AGAGAAGCCTACATAATAGTACATTCA 57.632 33.333 0.00 0.00 0.00 2.57
250 251 9.575783 GCATAAGAGAAGCCTACATAATAGTAC 57.424 37.037 0.00 0.00 0.00 2.73
251 252 9.309224 TGCATAAGAGAAGCCTACATAATAGTA 57.691 33.333 0.00 0.00 0.00 1.82
252 253 8.195165 TGCATAAGAGAAGCCTACATAATAGT 57.805 34.615 0.00 0.00 0.00 2.12
253 254 9.494271 TTTGCATAAGAGAAGCCTACATAATAG 57.506 33.333 0.00 0.00 0.00 1.73
293 294 6.554982 AGATCAGTATGGCCTTACAGACATAA 59.445 38.462 25.88 6.74 35.14 1.90
312 320 4.267214 CAGTAGCACATCGAAACAGATCAG 59.733 45.833 0.00 0.00 0.00 2.90
344 352 5.673337 ATATGACATGCCATCGTTGTAAC 57.327 39.130 0.00 0.00 0.00 2.50
348 356 4.923893 ACAAATATGACATGCCATCGTTG 58.076 39.130 12.93 12.93 31.79 4.10
353 361 4.639755 TCGACAACAAATATGACATGCCAT 59.360 37.500 0.00 0.00 0.00 4.40
374 382 5.934921 GTGGTCCACCTAAAAACTAATTCG 58.065 41.667 11.30 0.00 36.82 3.34
383 391 9.880758 TGTTAAAACAGGGTGGTCCACCTAAAA 62.881 40.741 34.97 19.26 42.99 1.52
478 486 2.667418 CCTCCAGGTGTGAGGCTG 59.333 66.667 0.00 0.00 42.75 4.85
532 540 7.492352 AACGAACTACTTAGAAGTTTTGCAT 57.508 32.000 0.00 0.00 40.37 3.96
602 610 3.262135 AGCACGACACAAAATTTACCG 57.738 42.857 0.00 0.00 0.00 4.02
650 670 1.250840 AAGGAGGCCGGCATTGTTTC 61.251 55.000 30.85 14.44 0.00 2.78
660 680 4.148825 CTCACGGGAAGGAGGCCG 62.149 72.222 0.00 0.00 0.00 6.13
672 692 9.490663 CATTAGCTACTTTAAAATTTCCTCACG 57.509 33.333 0.00 0.00 0.00 4.35
677 697 9.076596 CAGTGCATTAGCTACTTTAAAATTTCC 57.923 33.333 0.00 0.00 42.74 3.13
710 730 8.458843 TGTTCAACTTTTTAAACCTCTCTGAAG 58.541 33.333 0.00 0.00 0.00 3.02
711 731 8.343168 TGTTCAACTTTTTAAACCTCTCTGAA 57.657 30.769 0.00 0.00 0.00 3.02
716 736 9.366216 GTTTGATGTTCAACTTTTTAAACCTCT 57.634 29.630 0.00 0.00 35.89 3.69
724 744 6.159988 TCGGTTGTTTGATGTTCAACTTTTT 58.840 32.000 0.00 0.00 40.52 1.94
787 807 7.594714 TCAAACTAGCTTAATAGATAGAGCCG 58.405 38.462 4.62 0.00 41.82 5.52
1026 1047 3.138304 TGTGTGGTCATAACTTGCAGTC 58.862 45.455 0.00 0.00 0.00 3.51
1235 1256 2.170607 TCAAGCCTAGGCATTGGTCTAC 59.829 50.000 34.70 1.83 44.88 2.59
1247 1268 1.590238 CTTGACGCGAATCAAGCCTAG 59.410 52.381 21.75 4.24 46.69 3.02
1248 1269 1.640428 CTTGACGCGAATCAAGCCTA 58.360 50.000 21.75 0.00 46.69 3.93
1262 1283 7.827819 TGCAAGTATGTAACTATGTCTTGAC 57.172 36.000 0.00 0.00 37.50 3.18
1317 1338 4.030977 GCGATTTACTTGCTGCAAAAGATG 59.969 41.667 16.74 6.77 0.00 2.90
1437 1458 3.058293 TGGTTGCTTTTAGAGAACATGCG 60.058 43.478 0.00 0.00 0.00 4.73
1438 1459 4.503741 TGGTTGCTTTTAGAGAACATGC 57.496 40.909 0.00 0.00 0.00 4.06
1470 1491 6.128117 TGAGTAAATAAGGAACGGAAACATGC 60.128 38.462 0.00 0.00 0.00 4.06
1755 1776 4.599047 ACTCTGAGTCTGCATAATAGCC 57.401 45.455 4.06 0.00 0.00 3.93
1848 1869 8.303876 TGAATTGGTAGGATTTTCTAAACAAGC 58.696 33.333 0.00 0.00 0.00 4.01
2432 2463 4.935808 AGCAAAAACTATCAAGACCTACGG 59.064 41.667 0.00 0.00 0.00 4.02
3027 3060 5.238432 GGGAAAGCGAAAATTGGTCATTTTT 59.762 36.000 0.00 4.02 43.89 1.94
3059 3092 5.106396 GCAGTGTGCAGAAGAAGACATTTAT 60.106 40.000 0.00 0.00 44.26 1.40
3404 3528 7.147966 GGAAAATCGAATACCCCACATAGTTTT 60.148 37.037 0.00 0.00 0.00 2.43
3413 3537 2.578940 ACCTGGAAAATCGAATACCCCA 59.421 45.455 0.00 0.00 0.00 4.96
3425 3549 1.896660 GCGCTGGTGACCTGGAAAA 60.897 57.895 10.61 0.00 0.00 2.29
3427 3551 3.241530 AGCGCTGGTGACCTGGAA 61.242 61.111 10.39 0.00 0.00 3.53
3473 3597 4.157656 GCACCTGTTATCAAATAAGCACCA 59.842 41.667 0.00 0.00 0.00 4.17
3533 3657 6.616947 TGCTTGGTTTTAAATCGTGAATAGG 58.383 36.000 0.00 0.00 0.00 2.57
3848 3973 6.150140 TGCACTGCATATACATTGTTACACAA 59.850 34.615 0.00 0.00 36.63 3.33
3894 4023 6.641169 TGCAAGTTAACCATACAAATCACA 57.359 33.333 0.88 0.00 0.00 3.58
3910 4039 7.498570 ACAAATAAACATCCAACAATGCAAGTT 59.501 29.630 0.00 0.00 0.00 2.66
3911 4040 6.991531 ACAAATAAACATCCAACAATGCAAGT 59.008 30.769 0.00 0.00 0.00 3.16
3912 4041 7.292292 CACAAATAAACATCCAACAATGCAAG 58.708 34.615 0.00 0.00 0.00 4.01
3914 4043 5.178996 GCACAAATAAACATCCAACAATGCA 59.821 36.000 0.00 0.00 0.00 3.96
3915 4044 5.178996 TGCACAAATAAACATCCAACAATGC 59.821 36.000 0.00 0.00 0.00 3.56
3927 4056 5.898630 ATTTCGGTTGTGCACAAATAAAC 57.101 34.783 32.61 20.63 37.63 2.01
4026 4155 6.293407 CGAAGAAGAACATAGCAAAGAACCAA 60.293 38.462 0.00 0.00 0.00 3.67
4050 4179 2.478746 CATTTGGCCGTCGAACCG 59.521 61.111 0.00 0.00 0.00 4.44
4166 4295 6.295916 CCTTAAAAGAAACTAGAGAGGAGGCA 60.296 42.308 0.00 0.00 0.00 4.75
4171 4300 7.119992 GCTTTCCCTTAAAAGAAACTAGAGAGG 59.880 40.741 0.00 0.00 38.30 3.69
4202 4331 7.535139 TCTTTTGGCTGAGAAATAAAATACCG 58.465 34.615 0.00 0.00 0.00 4.02
4263 4392 5.822519 CCCAATTTTATCCGTCTGATTCTCA 59.177 40.000 0.00 0.00 34.76 3.27
4291 4420 5.420104 GTCTGATTTTGTTTGGGATGGAGAT 59.580 40.000 0.00 0.00 0.00 2.75
4307 4436 7.607991 ACATTCTTATGAAACTCGGTCTGATTT 59.392 33.333 0.00 0.00 35.63 2.17
4347 4476 5.195185 TCTGGCAAAGCATTCTATGATGAA 58.805 37.500 0.00 0.00 0.00 2.57
4376 4505 7.046033 CGGTTTCTAAAATAAGCTAGGGAGAA 58.954 38.462 0.00 0.00 0.00 2.87
4413 4542 0.108207 TTTTAACCGACCCCAAGCGA 59.892 50.000 0.00 0.00 0.00 4.93
4425 4554 7.306213 CCTAGTTCTTTTAGCAGCTTTTAACC 58.694 38.462 0.00 0.00 0.00 2.85
4435 4564 5.488341 CACTAAGGCCTAGTTCTTTTAGCA 58.512 41.667 5.16 0.00 38.92 3.49
4480 4609 6.617953 GCGTTATTTATCTCTGGAATAACCGC 60.618 42.308 10.75 12.27 40.53 5.68
4482 4611 6.148976 GGGCGTTATTTATCTCTGGAATAACC 59.851 42.308 10.75 0.00 40.53 2.85
4511 4640 5.048507 GGACTCAGAAATGGATACCGTTAC 58.951 45.833 0.00 0.00 31.76 2.50
4516 4645 3.711704 TCCTGGACTCAGAAATGGATACC 59.288 47.826 0.00 0.00 43.49 2.73
4535 4664 1.133884 TCGTCGGGTGTAGATGATCCT 60.134 52.381 0.00 0.00 0.00 3.24
4536 4665 1.315690 TCGTCGGGTGTAGATGATCC 58.684 55.000 0.00 0.00 0.00 3.36
4595 4724 5.475719 CACTGAAACATCTTCCATGCAATT 58.524 37.500 0.00 0.00 0.00 2.32
4596 4725 4.619863 GCACTGAAACATCTTCCATGCAAT 60.620 41.667 0.00 0.00 32.10 3.56
4614 4749 3.807538 GCATGGCCTCACGCACTG 61.808 66.667 3.32 0.00 40.31 3.66
4625 4760 1.698714 GCGCTGAAAATTGGCATGGC 61.699 55.000 13.29 13.29 0.00 4.40
4634 4769 1.225376 TGTCCGAACGCGCTGAAAAT 61.225 50.000 5.73 0.00 35.83 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.