Multiple sequence alignment - TraesCS4D01G023100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G023100 chr4D 100.000 2876 0 0 1 2876 9716694 9719569 0.000000e+00 5312.0
1 TraesCS4D01G023100 chr4D 100.000 45 0 0 846 890 9717508 9717552 1.840000e-12 84.2
2 TraesCS4D01G023100 chr4D 100.000 45 0 0 815 859 9717539 9717583 1.840000e-12 84.2
3 TraesCS4D01G023100 chr4A 91.020 1559 105 21 1203 2741 593495755 593494212 0.000000e+00 2071.0
4 TraesCS4D01G023100 chr4A 92.093 860 25 7 4 859 593496811 593495991 0.000000e+00 1171.0
5 TraesCS4D01G023100 chr4A 82.812 320 18 15 847 1164 593496034 593495750 4.760000e-63 252.0
6 TraesCS4D01G023100 chr3D 91.045 67 6 0 2793 2859 3041698 3041764 1.100000e-14 91.6
7 TraesCS4D01G023100 chr3D 92.982 57 4 0 2793 2849 14526908 14526852 1.840000e-12 84.2
8 TraesCS4D01G023100 chr6D 86.111 72 9 1 2793 2863 446858962 446858891 3.070000e-10 76.8
9 TraesCS4D01G023100 chr5D 86.111 72 9 1 2793 2863 557943054 557942983 3.070000e-10 76.8
10 TraesCS4D01G023100 chr5D 93.617 47 3 0 2792 2838 34043925 34043879 1.430000e-08 71.3
11 TraesCS4D01G023100 chr5D 96.774 31 1 0 2790 2820 329427887 329427917 5.000000e-03 52.8
12 TraesCS4D01G023100 chr3B 87.500 64 7 1 2789 2851 542491239 542491176 3.970000e-09 73.1
13 TraesCS4D01G023100 chr3A 91.667 48 4 0 2790 2837 747609068 747609115 1.850000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G023100 chr4D 9716694 9719569 2875 False 1826.800000 5312 100.000000 1 2876 3 chr4D.!!$F1 2875
1 TraesCS4D01G023100 chr4A 593494212 593496811 2599 True 1164.666667 2071 88.641667 4 2741 3 chr4A.!!$R1 2737

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
727 732 0.391661 GTGAAGAAGATGGCAGGCGA 60.392 55.0 0.0 0.0 0.00 5.54 F
1457 1464 0.038343 CCATTGTTCCCAAACGGCAG 60.038 55.0 0.0 0.0 38.28 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1704 1711 0.321653 GAGACAGCGAACCCCAATGT 60.322 55.0 0.0 0.0 0.0 2.71 R
2751 2775 0.040351 CAGGGACACAGAGAGGGAGA 59.960 60.0 0.0 0.0 0.0 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
198 199 3.165160 AACTCGCCGGCACAGAAGT 62.165 57.895 28.98 17.38 0.00 3.01
209 210 3.143010 ACAGAAGTGACCGGGAAGA 57.857 52.632 6.32 0.00 0.00 2.87
210 211 0.680061 ACAGAAGTGACCGGGAAGAC 59.320 55.000 6.32 0.00 0.00 3.01
264 265 1.220206 CAGACGATGGGCAGAAGCT 59.780 57.895 0.00 0.00 41.70 3.74
266 267 1.817099 GACGATGGGCAGAAGCTGG 60.817 63.158 0.00 0.00 41.70 4.85
299 300 1.291877 CGTGCTGAACAGTGGTAGCC 61.292 60.000 11.42 4.46 35.36 3.93
300 301 0.955919 GTGCTGAACAGTGGTAGCCC 60.956 60.000 11.42 0.00 35.36 5.19
301 302 1.741770 GCTGAACAGTGGTAGCCCG 60.742 63.158 3.77 0.00 0.00 6.13
482 483 2.046604 GCGAAAACCGGTAGGGCT 60.047 61.111 8.00 0.00 43.47 5.19
560 561 2.509336 AATTCTCCGAGCGCCACG 60.509 61.111 15.83 15.83 0.00 4.94
579 580 2.676471 GCGGCATGACCCAAGGTT 60.676 61.111 0.00 0.00 35.25 3.50
727 732 0.391661 GTGAAGAAGATGGCAGGCGA 60.392 55.000 0.00 0.00 0.00 5.54
764 769 0.531200 CTCGACAGACCTAACACCCC 59.469 60.000 0.00 0.00 0.00 4.95
781 786 2.235016 CCGACAACGACACGCTTGT 61.235 57.895 0.00 0.00 42.66 3.16
782 787 1.634225 CGACAACGACACGCTTGTT 59.366 52.632 0.00 0.00 42.66 2.83
783 788 0.650476 CGACAACGACACGCTTGTTG 60.650 55.000 8.97 8.97 46.40 3.33
807 812 2.036346 ACCTACACTGTTCGTTACACCC 59.964 50.000 0.00 0.00 32.10 4.61
830 835 4.590850 AAAAATCACACTTCTTGGCCTC 57.409 40.909 3.32 0.00 0.00 4.70
831 836 3.515602 AAATCACACTTCTTGGCCTCT 57.484 42.857 3.32 0.00 0.00 3.69
832 837 2.777832 ATCACACTTCTTGGCCTCTC 57.222 50.000 3.32 0.00 0.00 3.20
833 838 0.687354 TCACACTTCTTGGCCTCTCC 59.313 55.000 3.32 0.00 0.00 3.71
834 839 0.689623 CACACTTCTTGGCCTCTCCT 59.310 55.000 3.32 0.00 35.26 3.69
835 840 1.072965 CACACTTCTTGGCCTCTCCTT 59.927 52.381 3.32 0.00 35.26 3.36
836 841 1.777272 ACACTTCTTGGCCTCTCCTTT 59.223 47.619 3.32 0.00 35.26 3.11
837 842 2.175715 ACACTTCTTGGCCTCTCCTTTT 59.824 45.455 3.32 0.00 35.26 2.27
838 843 2.816672 CACTTCTTGGCCTCTCCTTTTC 59.183 50.000 3.32 0.00 35.26 2.29
839 844 2.713708 ACTTCTTGGCCTCTCCTTTTCT 59.286 45.455 3.32 0.00 35.26 2.52
840 845 3.139211 ACTTCTTGGCCTCTCCTTTTCTT 59.861 43.478 3.32 0.00 35.26 2.52
841 846 3.146104 TCTTGGCCTCTCCTTTTCTTG 57.854 47.619 3.32 0.00 35.26 3.02
842 847 2.443255 TCTTGGCCTCTCCTTTTCTTGT 59.557 45.455 3.32 0.00 35.26 3.16
843 848 3.117512 TCTTGGCCTCTCCTTTTCTTGTT 60.118 43.478 3.32 0.00 35.26 2.83
844 849 3.312736 TGGCCTCTCCTTTTCTTGTTT 57.687 42.857 3.32 0.00 35.26 2.83
845 850 3.642141 TGGCCTCTCCTTTTCTTGTTTT 58.358 40.909 3.32 0.00 35.26 2.43
846 851 3.636764 TGGCCTCTCCTTTTCTTGTTTTC 59.363 43.478 3.32 0.00 35.26 2.29
847 852 3.636764 GGCCTCTCCTTTTCTTGTTTTCA 59.363 43.478 0.00 0.00 0.00 2.69
848 853 4.499865 GGCCTCTCCTTTTCTTGTTTTCAC 60.500 45.833 0.00 0.00 0.00 3.18
849 854 4.097892 GCCTCTCCTTTTCTTGTTTTCACA 59.902 41.667 0.00 0.00 0.00 3.58
850 855 5.582550 CCTCTCCTTTTCTTGTTTTCACAC 58.417 41.667 0.00 0.00 30.32 3.82
851 856 5.358160 CCTCTCCTTTTCTTGTTTTCACACT 59.642 40.000 0.00 0.00 30.32 3.55
852 857 6.127619 CCTCTCCTTTTCTTGTTTTCACACTT 60.128 38.462 0.00 0.00 30.32 3.16
853 858 6.852664 TCTCCTTTTCTTGTTTTCACACTTC 58.147 36.000 0.00 0.00 30.32 3.01
854 859 6.659242 TCTCCTTTTCTTGTTTTCACACTTCT 59.341 34.615 0.00 0.00 30.32 2.85
864 869 0.687354 TCACACTTCTTGGCCTCTCC 59.313 55.000 3.32 0.00 0.00 3.71
896 901 4.093952 CACTTCTTGGCAGGCGCG 62.094 66.667 0.00 0.00 39.92 6.86
899 904 4.947147 TTCTTGGCAGGCGCGGTT 62.947 61.111 8.83 0.00 39.92 4.44
905 910 4.090057 GCAGGCGCGGTTGAGAAC 62.090 66.667 8.83 0.00 0.00 3.01
948 955 6.538742 CCACATAAATAGAAGTGTTGATCCGT 59.461 38.462 0.00 0.00 0.00 4.69
955 962 1.633774 AGTGTTGATCCGTGTCTCCT 58.366 50.000 0.00 0.00 0.00 3.69
964 971 0.946221 CCGTGTCTCCTTCAGTGCAC 60.946 60.000 9.40 9.40 0.00 4.57
1013 1020 5.996219 TCACTTCACCATGTCGTTAATTTG 58.004 37.500 0.00 0.00 0.00 2.32
1014 1021 4.616802 CACTTCACCATGTCGTTAATTTGC 59.383 41.667 0.00 0.00 0.00 3.68
1015 1022 3.840890 TCACCATGTCGTTAATTTGCC 57.159 42.857 0.00 0.00 0.00 4.52
1016 1023 2.160615 TCACCATGTCGTTAATTTGCCG 59.839 45.455 0.00 0.00 0.00 5.69
1017 1024 1.135517 ACCATGTCGTTAATTTGCCGC 60.136 47.619 0.00 0.00 0.00 6.53
1018 1025 1.135546 CCATGTCGTTAATTTGCCGCA 60.136 47.619 0.00 0.00 0.00 5.69
1019 1026 2.479389 CCATGTCGTTAATTTGCCGCAT 60.479 45.455 0.00 0.00 0.00 4.73
1020 1027 2.999507 TGTCGTTAATTTGCCGCATT 57.000 40.000 0.00 0.00 0.00 3.56
1021 1028 2.857618 TGTCGTTAATTTGCCGCATTC 58.142 42.857 0.00 0.00 0.00 2.67
1022 1029 2.486203 TGTCGTTAATTTGCCGCATTCT 59.514 40.909 0.00 0.00 0.00 2.40
1023 1030 3.057876 TGTCGTTAATTTGCCGCATTCTT 60.058 39.130 0.00 0.00 0.00 2.52
1024 1031 3.917985 GTCGTTAATTTGCCGCATTCTTT 59.082 39.130 0.00 0.00 0.00 2.52
1025 1032 4.384547 GTCGTTAATTTGCCGCATTCTTTT 59.615 37.500 0.00 0.00 0.00 2.27
1026 1033 4.619336 TCGTTAATTTGCCGCATTCTTTTC 59.381 37.500 0.00 0.00 0.00 2.29
1027 1034 4.621034 CGTTAATTTGCCGCATTCTTTTCT 59.379 37.500 0.00 0.00 0.00 2.52
1028 1035 5.118510 CGTTAATTTGCCGCATTCTTTTCTT 59.881 36.000 0.00 0.00 0.00 2.52
1029 1036 6.525355 GTTAATTTGCCGCATTCTTTTCTTC 58.475 36.000 0.00 0.00 0.00 2.87
1030 1037 4.525912 ATTTGCCGCATTCTTTTCTTCT 57.474 36.364 0.00 0.00 0.00 2.85
1031 1038 4.320608 TTTGCCGCATTCTTTTCTTCTT 57.679 36.364 0.00 0.00 0.00 2.52
1032 1039 3.559238 TGCCGCATTCTTTTCTTCTTC 57.441 42.857 0.00 0.00 0.00 2.87
1033 1040 3.149196 TGCCGCATTCTTTTCTTCTTCT 58.851 40.909 0.00 0.00 0.00 2.85
1034 1041 3.569701 TGCCGCATTCTTTTCTTCTTCTT 59.430 39.130 0.00 0.00 0.00 2.52
1035 1042 4.162072 GCCGCATTCTTTTCTTCTTCTTC 58.838 43.478 0.00 0.00 0.00 2.87
1036 1043 4.083057 GCCGCATTCTTTTCTTCTTCTTCT 60.083 41.667 0.00 0.00 0.00 2.85
1037 1044 5.563671 GCCGCATTCTTTTCTTCTTCTTCTT 60.564 40.000 0.00 0.00 0.00 2.52
1038 1045 6.082984 CCGCATTCTTTTCTTCTTCTTCTTC 58.917 40.000 0.00 0.00 0.00 2.87
1039 1046 6.072783 CCGCATTCTTTTCTTCTTCTTCTTCT 60.073 38.462 0.00 0.00 0.00 2.85
1066 1073 1.725182 TCTTCTTCTTCTCCCTCCCCT 59.275 52.381 0.00 0.00 0.00 4.79
1080 1087 2.589157 CCCCTTCCACCACGCACTA 61.589 63.158 0.00 0.00 0.00 2.74
1088 1095 1.533273 ACCACGCACTAGACCCAGT 60.533 57.895 0.00 0.00 0.00 4.00
1089 1096 1.215647 CCACGCACTAGACCCAGTC 59.784 63.158 0.00 0.00 0.00 3.51
1091 1098 0.317160 CACGCACTAGACCCAGTCAA 59.683 55.000 0.00 0.00 34.60 3.18
1093 1100 1.066858 ACGCACTAGACCCAGTCAATG 60.067 52.381 0.00 0.00 34.60 2.82
1098 1105 4.748892 CACTAGACCCAGTCAATGTACTG 58.251 47.826 0.00 6.05 45.33 2.74
1123 1130 7.326063 TGAATGTACAATATAATGTCTCGAGCG 59.674 37.037 7.81 0.00 34.75 5.03
1125 1132 6.140786 TGTACAATATAATGTCTCGAGCGAC 58.859 40.000 7.81 2.30 34.75 5.19
1166 1173 2.767505 CCTTTTGTCTAGGCAGTTCGT 58.232 47.619 0.00 0.00 0.00 3.85
1167 1174 3.921677 CCTTTTGTCTAGGCAGTTCGTA 58.078 45.455 0.00 0.00 0.00 3.43
1168 1175 3.927142 CCTTTTGTCTAGGCAGTTCGTAG 59.073 47.826 0.00 0.00 35.15 3.51
1169 1176 2.649331 TTGTCTAGGCAGTTCGTAGC 57.351 50.000 0.00 0.00 34.15 3.58
1170 1177 0.450583 TGTCTAGGCAGTTCGTAGCG 59.549 55.000 0.00 0.00 34.15 4.26
1171 1178 0.450983 GTCTAGGCAGTTCGTAGCGT 59.549 55.000 0.00 0.00 34.15 5.07
1172 1179 1.667724 GTCTAGGCAGTTCGTAGCGTA 59.332 52.381 0.00 0.00 34.15 4.42
1173 1180 1.667724 TCTAGGCAGTTCGTAGCGTAC 59.332 52.381 0.00 0.00 34.15 3.67
1174 1181 1.399440 CTAGGCAGTTCGTAGCGTACA 59.601 52.381 0.00 0.00 29.93 2.90
1175 1182 0.170561 AGGCAGTTCGTAGCGTACAG 59.829 55.000 0.00 0.00 29.93 2.74
1176 1183 0.109412 GGCAGTTCGTAGCGTACAGT 60.109 55.000 0.00 0.00 29.93 3.55
1177 1184 1.257539 GCAGTTCGTAGCGTACAGTC 58.742 55.000 0.00 0.00 29.93 3.51
1178 1185 1.521411 CAGTTCGTAGCGTACAGTCG 58.479 55.000 0.00 0.00 29.93 4.18
1186 1193 3.545911 CGTACAGTCGCAACCCAC 58.454 61.111 0.00 0.00 0.00 4.61
1187 1194 2.025418 CGTACAGTCGCAACCCACC 61.025 63.158 0.00 0.00 0.00 4.61
1188 1195 1.070105 GTACAGTCGCAACCCACCA 59.930 57.895 0.00 0.00 0.00 4.17
1189 1196 1.070105 TACAGTCGCAACCCACCAC 59.930 57.895 0.00 0.00 0.00 4.16
1190 1197 1.687297 TACAGTCGCAACCCACCACA 61.687 55.000 0.00 0.00 0.00 4.17
1191 1198 2.111043 AGTCGCAACCCACCACAG 59.889 61.111 0.00 0.00 0.00 3.66
1192 1199 2.978010 GTCGCAACCCACCACAGG 60.978 66.667 0.00 0.00 0.00 4.00
1193 1200 3.484806 TCGCAACCCACCACAGGT 61.485 61.111 0.00 0.00 40.14 4.00
1195 1202 2.551912 CGCAACCCACCACAGGTTC 61.552 63.158 0.00 0.00 44.42 3.62
1196 1203 1.152756 GCAACCCACCACAGGTTCT 60.153 57.895 0.00 0.00 44.42 3.01
1197 1204 1.455383 GCAACCCACCACAGGTTCTG 61.455 60.000 0.00 0.00 44.42 3.02
1198 1205 0.106719 CAACCCACCACAGGTTCTGT 60.107 55.000 0.00 0.00 44.42 3.41
1199 1206 0.629058 AACCCACCACAGGTTCTGTT 59.371 50.000 0.00 0.00 44.42 3.16
1200 1207 0.106719 ACCCACCACAGGTTCTGTTG 60.107 55.000 0.00 0.00 42.59 3.33
1201 1208 1.455383 CCCACCACAGGTTCTGTTGC 61.455 60.000 0.00 0.00 42.59 4.17
1202 1209 1.648720 CACCACAGGTTCTGTTGCG 59.351 57.895 0.00 0.00 42.59 4.85
1203 1210 2.186826 ACCACAGGTTCTGTTGCGC 61.187 57.895 0.00 0.00 42.59 6.09
1204 1211 2.186160 CCACAGGTTCTGTTGCGCA 61.186 57.895 5.66 5.66 42.59 6.09
1205 1212 1.280746 CACAGGTTCTGTTGCGCAG 59.719 57.895 11.31 0.00 42.59 5.18
1206 1213 1.893808 ACAGGTTCTGTTGCGCAGG 60.894 57.895 11.31 5.43 42.59 4.85
1207 1214 1.893808 CAGGTTCTGTTGCGCAGGT 60.894 57.895 11.31 0.00 45.08 4.00
1208 1215 1.152963 AGGTTCTGTTGCGCAGGTT 60.153 52.632 11.31 0.00 45.08 3.50
1218 1225 2.597217 CGCAGGTTTCTTGCCCCA 60.597 61.111 0.00 0.00 0.00 4.96
1219 1226 2.919494 CGCAGGTTTCTTGCCCCAC 61.919 63.158 0.00 0.00 0.00 4.61
1233 1240 3.508840 CCACGGCGGCCTGATTTC 61.509 66.667 18.34 0.00 0.00 2.17
1234 1241 3.864686 CACGGCGGCCTGATTTCG 61.865 66.667 18.34 4.15 0.00 3.46
1241 1248 1.077429 GGCCTGATTTCGAAGCCCT 60.077 57.895 13.02 0.00 37.66 5.19
1245 1252 1.065126 CCTGATTTCGAAGCCCTTCCT 60.065 52.381 0.00 0.00 36.27 3.36
1335 1342 2.677875 GACCTGTACGTCCCGGGT 60.678 66.667 22.86 16.33 44.35 5.28
1344 1351 0.399075 ACGTCCCGGGTTTCAAAGAT 59.601 50.000 22.86 0.00 0.00 2.40
1370 1377 3.244700 ACTCTCCAGTGGAACCATTTCAG 60.245 47.826 14.17 0.00 37.80 3.02
1372 1379 3.394274 TCTCCAGTGGAACCATTTCAGAA 59.606 43.478 14.17 0.00 37.80 3.02
1420 1427 2.592864 AACTGCCCGTTCACCACA 59.407 55.556 0.00 0.00 0.00 4.17
1421 1428 1.822186 AACTGCCCGTTCACCACAC 60.822 57.895 0.00 0.00 0.00 3.82
1429 1436 1.508632 CGTTCACCACACTTACCCAG 58.491 55.000 0.00 0.00 0.00 4.45
1431 1438 2.767505 GTTCACCACACTTACCCAGAG 58.232 52.381 0.00 0.00 0.00 3.35
1437 1444 2.613977 CCACACTTACCCAGAGCTTCTG 60.614 54.545 6.28 6.28 43.91 3.02
1440 1447 0.615331 CTTACCCAGAGCTTCTGCCA 59.385 55.000 7.44 0.00 42.98 4.92
1457 1464 0.038343 CCATTGTTCCCAAACGGCAG 60.038 55.000 0.00 0.00 38.28 4.85
1460 1467 1.733402 TTGTTCCCAAACGGCAGCAG 61.733 55.000 0.00 0.00 38.28 4.24
1463 1470 0.539438 TTCCCAAACGGCAGCAGAAT 60.539 50.000 0.00 0.00 0.00 2.40
1464 1471 1.213537 CCCAAACGGCAGCAGAATG 59.786 57.895 0.00 0.00 40.87 2.67
1471 1478 1.878775 GGCAGCAGAATGTCACACC 59.121 57.895 0.00 0.00 39.31 4.16
1473 1480 0.520404 GCAGCAGAATGTCACACCTG 59.480 55.000 4.97 4.97 39.31 4.00
1480 1487 0.670162 AATGTCACACCTGCAACTGC 59.330 50.000 0.00 0.00 42.50 4.40
1503 1510 1.282157 CTAGTACCCTTGGGCAAAGCT 59.718 52.381 5.46 0.21 34.24 3.74
1513 1520 2.341176 GCAAAGCTGCCACCTTGG 59.659 61.111 0.00 0.00 43.26 3.61
1533 1540 3.053291 GCATTCCGGACGTTGGCA 61.053 61.111 1.83 0.00 0.00 4.92
1535 1542 1.953017 CATTCCGGACGTTGGCAAA 59.047 52.632 1.83 0.00 0.00 3.68
1546 1553 4.272748 GGACGTTGGCAAACTATAATCCTC 59.727 45.833 0.00 0.00 33.87 3.71
1561 1568 4.680237 CTCGCACCACGCCAAGGA 62.680 66.667 0.00 0.00 43.23 3.36
1562 1569 4.243008 TCGCACCACGCCAAGGAA 62.243 61.111 0.00 0.00 43.23 3.36
1564 1571 3.365265 GCACCACGCCAAGGAAGG 61.365 66.667 0.00 0.00 32.94 3.46
1603 1610 6.343716 TGGTAACACTAATCGTCACCTTTA 57.656 37.500 0.00 0.00 46.17 1.85
1660 1667 1.137513 GAAGAACGAGTGGGACAACG 58.862 55.000 0.00 0.00 44.16 4.10
1663 1670 1.282930 GAACGAGTGGGACAACGCTC 61.283 60.000 0.00 0.00 44.16 5.03
1704 1711 0.895100 AGGAGGCACCGTACGTTGTA 60.895 55.000 14.52 0.00 44.74 2.41
1707 1714 0.604578 AGGCACCGTACGTTGTACAT 59.395 50.000 14.52 0.00 0.00 2.29
1713 1720 1.338011 CCGTACGTTGTACATTGGGGT 60.338 52.381 15.21 0.00 0.00 4.95
1753 1760 0.618968 ATGGTGGGAGGAGAGTGGTC 60.619 60.000 0.00 0.00 0.00 4.02
1770 1777 1.339929 GGTCGCAAAAGTTGGACCAAT 59.660 47.619 10.83 0.00 44.00 3.16
1771 1778 2.554893 GGTCGCAAAAGTTGGACCAATA 59.445 45.455 10.83 0.00 44.00 1.90
1772 1779 3.365969 GGTCGCAAAAGTTGGACCAATAG 60.366 47.826 10.83 0.46 44.00 1.73
1773 1780 3.252458 GTCGCAAAAGTTGGACCAATAGT 59.748 43.478 10.83 0.00 0.00 2.12
1774 1781 3.500680 TCGCAAAAGTTGGACCAATAGTC 59.499 43.478 10.83 0.00 45.51 2.59
1795 1802 2.821378 CCACAGGACATTGCAGAATTCA 59.179 45.455 8.44 0.00 0.00 2.57
1797 1804 4.262121 CCACAGGACATTGCAGAATTCAAA 60.262 41.667 8.44 0.00 0.00 2.69
1815 1822 3.896888 TCAAAAAGATCCATGCCAACAGT 59.103 39.130 0.00 0.00 0.00 3.55
1820 1827 1.508667 ATCCATGCCAACAGTCCCCA 61.509 55.000 0.00 0.00 0.00 4.96
1859 1866 4.583871 CTGCTCTTCTTACAAAGGACCAT 58.416 43.478 0.00 0.00 0.00 3.55
1863 1870 5.473504 GCTCTTCTTACAAAGGACCATGAAA 59.526 40.000 0.00 0.00 0.00 2.69
1869 1876 8.421249 TCTTACAAAGGACCATGAAATTCAAT 57.579 30.769 0.00 0.00 0.00 2.57
1911 1927 7.341445 TGTTGTTTTACATTTAAGCCAGAGT 57.659 32.000 0.00 0.00 0.00 3.24
1917 1933 8.780249 GTTTTACATTTAAGCCAGAGTACTTGA 58.220 33.333 0.00 0.00 0.00 3.02
1977 1993 7.958053 AACTGTATTGTTCCAGTTAGTGTAC 57.042 36.000 3.38 0.00 46.97 2.90
1980 1996 6.828788 TGTATTGTTCCAGTTAGTGTACCAA 58.171 36.000 0.00 0.00 0.00 3.67
1995 2011 7.630242 AGTGTACCAATCAAGAAATGTATGG 57.370 36.000 0.00 0.00 39.88 2.74
2000 2020 6.434302 ACCAATCAAGAAATGTATGGATGGA 58.566 36.000 0.00 0.00 38.43 3.41
2015 2035 8.217111 TGTATGGATGGATGCTGTAAGAATAAA 58.783 33.333 0.00 0.00 26.21 1.40
2016 2036 9.066892 GTATGGATGGATGCTGTAAGAATAAAA 57.933 33.333 0.00 0.00 26.21 1.52
2017 2037 7.953005 TGGATGGATGCTGTAAGAATAAAAA 57.047 32.000 0.00 0.00 26.21 1.94
2208 2228 4.042398 CCGTCTATCTTTGATGTGTACGG 58.958 47.826 0.00 0.00 41.01 4.02
2210 2230 3.486108 GTCTATCTTTGATGTGTACGGCG 59.514 47.826 4.80 4.80 0.00 6.46
2211 2231 1.006832 ATCTTTGATGTGTACGGCGC 58.993 50.000 6.90 0.00 0.00 6.53
2230 2250 4.120646 CGCAGCTGTTAGAATTAATCCG 57.879 45.455 16.64 1.15 0.00 4.18
2257 2277 3.119101 ACGCTGTTGATCTACCGAGAAAT 60.119 43.478 11.47 0.00 34.61 2.17
2264 2284 6.876789 TGTTGATCTACCGAGAAATAAGCAAA 59.123 34.615 4.82 0.00 34.61 3.68
2274 2294 6.252015 CCGAGAAATAAGCAAACACATTCATG 59.748 38.462 0.00 0.00 0.00 3.07
2329 2349 5.405269 GTGGTTCAAAGGTTTTGTATCATGC 59.595 40.000 1.92 0.00 0.00 4.06
2352 2372 9.935682 ATGCATCAGTAATATAAGAAAACAACG 57.064 29.630 0.00 0.00 0.00 4.10
2373 2393 8.693625 ACAACGAAACTATAGGCTAGTTCTAAT 58.306 33.333 4.43 0.00 36.82 1.73
2399 2419 6.633500 TTCAAGTTTCATTCCAACGAATCT 57.367 33.333 0.00 0.00 36.54 2.40
2510 2533 3.450457 AGGAGGAGATTGTAGCAGTTCTG 59.550 47.826 0.00 0.00 0.00 3.02
2511 2534 3.431486 GGAGGAGATTGTAGCAGTTCTGG 60.431 52.174 1.97 0.00 0.00 3.86
2512 2535 3.445008 AGGAGATTGTAGCAGTTCTGGA 58.555 45.455 1.97 0.00 0.00 3.86
2513 2536 4.036518 AGGAGATTGTAGCAGTTCTGGAT 58.963 43.478 1.97 0.00 0.00 3.41
2520 2543 2.167861 GCAGTTCTGGATCGACGCC 61.168 63.158 0.00 0.00 0.00 5.68
2527 2550 4.585526 GGATCGACGCCGGCATCA 62.586 66.667 28.98 12.28 36.24 3.07
2544 2567 2.203788 ACGGTTCTGGGAGAGGCA 60.204 61.111 0.00 0.00 0.00 4.75
2577 2600 1.608283 CCGGGAACACCTTCTGAAGTC 60.608 57.143 15.72 6.89 36.97 3.01
2587 2610 2.538437 CTTCTGAAGTCGCAGATGGAG 58.462 52.381 9.26 0.00 43.84 3.86
2600 2623 3.431346 GCAGATGGAGATGCTTCAGTGTA 60.431 47.826 2.07 0.00 39.38 2.90
2618 2641 7.814642 TCAGTGTAAGACTACAGTTAGTTAGC 58.185 38.462 0.00 0.00 39.27 3.09
2628 2651 6.760770 ACTACAGTTAGTTAGCTAGTCTACCG 59.239 42.308 7.08 3.33 34.66 4.02
2722 2746 2.490217 CCGCCTCACTCACGTAGG 59.510 66.667 0.00 0.00 0.00 3.18
2741 2765 3.577919 AGGATTAGGATCGGCTGTTAGT 58.422 45.455 0.00 0.00 32.84 2.24
2742 2766 3.574826 AGGATTAGGATCGGCTGTTAGTC 59.425 47.826 0.00 0.00 32.84 2.59
2743 2767 3.574826 GGATTAGGATCGGCTGTTAGTCT 59.425 47.826 0.00 0.00 32.84 3.24
2744 2768 4.551388 GATTAGGATCGGCTGTTAGTCTG 58.449 47.826 0.00 0.00 0.00 3.51
2745 2769 2.145397 AGGATCGGCTGTTAGTCTGA 57.855 50.000 0.00 0.00 0.00 3.27
2746 2770 1.751924 AGGATCGGCTGTTAGTCTGAC 59.248 52.381 0.00 0.00 0.00 3.51
2747 2771 1.534175 GGATCGGCTGTTAGTCTGACG 60.534 57.143 1.52 0.00 45.71 4.35
2748 2772 0.179134 ATCGGCTGTTAGTCTGACGC 60.179 55.000 1.52 0.00 44.35 5.19
2749 2773 1.805945 CGGCTGTTAGTCTGACGCC 60.806 63.158 15.74 15.74 39.43 5.68
2750 2774 1.592223 GGCTGTTAGTCTGACGCCT 59.408 57.895 17.40 0.00 35.39 5.52
2751 2775 0.037232 GGCTGTTAGTCTGACGCCTT 60.037 55.000 17.40 0.00 35.39 4.35
2752 2776 1.351153 GCTGTTAGTCTGACGCCTTC 58.649 55.000 1.52 0.00 0.00 3.46
2753 2777 1.067495 GCTGTTAGTCTGACGCCTTCT 60.067 52.381 1.52 0.00 0.00 2.85
2754 2778 2.869897 CTGTTAGTCTGACGCCTTCTC 58.130 52.381 1.52 0.00 0.00 2.87
2755 2779 1.544691 TGTTAGTCTGACGCCTTCTCC 59.455 52.381 1.52 0.00 0.00 3.71
2756 2780 1.135053 GTTAGTCTGACGCCTTCTCCC 60.135 57.143 1.52 0.00 0.00 4.30
2757 2781 0.331954 TAGTCTGACGCCTTCTCCCT 59.668 55.000 1.52 0.00 0.00 4.20
2758 2782 0.968393 AGTCTGACGCCTTCTCCCTC 60.968 60.000 1.52 0.00 0.00 4.30
2759 2783 0.968393 GTCTGACGCCTTCTCCCTCT 60.968 60.000 0.00 0.00 0.00 3.69
2760 2784 0.681564 TCTGACGCCTTCTCCCTCTC 60.682 60.000 0.00 0.00 0.00 3.20
2761 2785 0.682855 CTGACGCCTTCTCCCTCTCT 60.683 60.000 0.00 0.00 0.00 3.10
2762 2786 0.967887 TGACGCCTTCTCCCTCTCTG 60.968 60.000 0.00 0.00 0.00 3.35
2763 2787 0.968393 GACGCCTTCTCCCTCTCTGT 60.968 60.000 0.00 0.00 0.00 3.41
2764 2788 1.254284 ACGCCTTCTCCCTCTCTGTG 61.254 60.000 0.00 0.00 0.00 3.66
2765 2789 1.254284 CGCCTTCTCCCTCTCTGTGT 61.254 60.000 0.00 0.00 0.00 3.72
2766 2790 0.534873 GCCTTCTCCCTCTCTGTGTC 59.465 60.000 0.00 0.00 0.00 3.67
2767 2791 1.190643 CCTTCTCCCTCTCTGTGTCC 58.809 60.000 0.00 0.00 0.00 4.02
2768 2792 1.190643 CTTCTCCCTCTCTGTGTCCC 58.809 60.000 0.00 0.00 0.00 4.46
2769 2793 0.787084 TTCTCCCTCTCTGTGTCCCT 59.213 55.000 0.00 0.00 0.00 4.20
2770 2794 0.040351 TCTCCCTCTCTGTGTCCCTG 59.960 60.000 0.00 0.00 0.00 4.45
2771 2795 0.252012 CTCCCTCTCTGTGTCCCTGT 60.252 60.000 0.00 0.00 0.00 4.00
2772 2796 1.006043 CTCCCTCTCTGTGTCCCTGTA 59.994 57.143 0.00 0.00 0.00 2.74
2773 2797 1.646447 TCCCTCTCTGTGTCCCTGTAT 59.354 52.381 0.00 0.00 0.00 2.29
2774 2798 2.035632 CCCTCTCTGTGTCCCTGTATC 58.964 57.143 0.00 0.00 0.00 2.24
2775 2799 2.035632 CCTCTCTGTGTCCCTGTATCC 58.964 57.143 0.00 0.00 0.00 2.59
2776 2800 2.035632 CTCTCTGTGTCCCTGTATCCC 58.964 57.143 0.00 0.00 0.00 3.85
2777 2801 1.646447 TCTCTGTGTCCCTGTATCCCT 59.354 52.381 0.00 0.00 0.00 4.20
2778 2802 2.044492 TCTCTGTGTCCCTGTATCCCTT 59.956 50.000 0.00 0.00 0.00 3.95
2779 2803 2.432510 CTCTGTGTCCCTGTATCCCTTC 59.567 54.545 0.00 0.00 0.00 3.46
2780 2804 1.486726 CTGTGTCCCTGTATCCCTTCC 59.513 57.143 0.00 0.00 0.00 3.46
2781 2805 0.837940 GTGTCCCTGTATCCCTTCCC 59.162 60.000 0.00 0.00 0.00 3.97
2782 2806 0.722676 TGTCCCTGTATCCCTTCCCT 59.277 55.000 0.00 0.00 0.00 4.20
2783 2807 1.082194 TGTCCCTGTATCCCTTCCCTT 59.918 52.381 0.00 0.00 0.00 3.95
2784 2808 2.319747 TGTCCCTGTATCCCTTCCCTTA 59.680 50.000 0.00 0.00 0.00 2.69
2785 2809 3.050564 TGTCCCTGTATCCCTTCCCTTAT 60.051 47.826 0.00 0.00 0.00 1.73
2786 2810 3.981375 GTCCCTGTATCCCTTCCCTTATT 59.019 47.826 0.00 0.00 0.00 1.40
2787 2811 4.415846 GTCCCTGTATCCCTTCCCTTATTT 59.584 45.833 0.00 0.00 0.00 1.40
2788 2812 5.609708 GTCCCTGTATCCCTTCCCTTATTTA 59.390 44.000 0.00 0.00 0.00 1.40
2789 2813 6.102174 GTCCCTGTATCCCTTCCCTTATTTAA 59.898 42.308 0.00 0.00 0.00 1.52
2790 2814 6.860480 TCCCTGTATCCCTTCCCTTATTTAAT 59.140 38.462 0.00 0.00 0.00 1.40
2791 2815 7.355212 TCCCTGTATCCCTTCCCTTATTTAATT 59.645 37.037 0.00 0.00 0.00 1.40
2792 2816 7.670140 CCCTGTATCCCTTCCCTTATTTAATTC 59.330 40.741 0.00 0.00 0.00 2.17
2793 2817 8.224720 CCTGTATCCCTTCCCTTATTTAATTCA 58.775 37.037 0.00 0.00 0.00 2.57
2794 2818 9.289782 CTGTATCCCTTCCCTTATTTAATTCAG 57.710 37.037 0.00 0.00 0.00 3.02
2795 2819 8.787818 TGTATCCCTTCCCTTATTTAATTCAGT 58.212 33.333 0.00 0.00 0.00 3.41
2796 2820 9.642343 GTATCCCTTCCCTTATTTAATTCAGTT 57.358 33.333 0.00 0.00 0.00 3.16
2799 2823 9.695155 TCCCTTCCCTTATTTAATTCAGTTTAG 57.305 33.333 0.00 0.00 0.00 1.85
2800 2824 8.414003 CCCTTCCCTTATTTAATTCAGTTTAGC 58.586 37.037 0.00 0.00 0.00 3.09
2801 2825 9.190317 CCTTCCCTTATTTAATTCAGTTTAGCT 57.810 33.333 0.00 0.00 0.00 3.32
2803 2827 7.996385 TCCCTTATTTAATTCAGTTTAGCTGC 58.004 34.615 0.00 0.00 44.66 5.25
2804 2828 7.613801 TCCCTTATTTAATTCAGTTTAGCTGCA 59.386 33.333 1.02 0.00 44.66 4.41
2805 2829 7.702348 CCCTTATTTAATTCAGTTTAGCTGCAC 59.298 37.037 1.02 0.00 44.66 4.57
2806 2830 8.243426 CCTTATTTAATTCAGTTTAGCTGCACA 58.757 33.333 1.02 0.00 44.66 4.57
2807 2831 9.793252 CTTATTTAATTCAGTTTAGCTGCACAT 57.207 29.630 1.02 0.00 44.66 3.21
2808 2832 9.787532 TTATTTAATTCAGTTTAGCTGCACATC 57.212 29.630 1.02 0.00 44.66 3.06
2809 2833 6.816134 TTAATTCAGTTTAGCTGCACATCA 57.184 33.333 1.02 0.00 44.66 3.07
2810 2834 4.959596 ATTCAGTTTAGCTGCACATCAG 57.040 40.909 1.02 0.00 44.66 2.90
2811 2835 3.407424 TCAGTTTAGCTGCACATCAGT 57.593 42.857 1.02 0.00 44.66 3.41
2812 2836 3.329386 TCAGTTTAGCTGCACATCAGTC 58.671 45.455 1.02 0.00 44.66 3.51
2813 2837 3.069289 CAGTTTAGCTGCACATCAGTCA 58.931 45.455 1.02 0.00 44.66 3.41
2814 2838 3.124806 CAGTTTAGCTGCACATCAGTCAG 59.875 47.826 1.02 0.00 44.66 3.51
2815 2839 1.730501 TTAGCTGCACATCAGTCAGC 58.269 50.000 1.02 5.41 44.66 4.26
2816 2840 1.678137 AGCTGCACATCAGTCAGCT 59.322 52.632 9.85 9.85 45.64 4.24
2817 2841 1.794864 GCTGCACATCAGTCAGCTG 59.205 57.895 7.63 7.63 44.66 4.24
2829 2853 5.874895 TCAGTCAGCTGATTTCAATTCAG 57.125 39.130 21.47 5.11 45.94 3.02
2834 2858 3.476295 GCTGATTTCAATTCAGCGTCA 57.524 42.857 16.45 0.00 45.63 4.35
2835 2859 3.825308 GCTGATTTCAATTCAGCGTCAA 58.175 40.909 16.45 0.00 45.63 3.18
2836 2860 4.418392 GCTGATTTCAATTCAGCGTCAAT 58.582 39.130 16.45 0.00 45.63 2.57
2837 2861 4.498323 GCTGATTTCAATTCAGCGTCAATC 59.502 41.667 16.45 0.00 45.63 2.67
2838 2862 4.650985 TGATTTCAATTCAGCGTCAATCG 58.349 39.130 0.00 0.00 43.12 3.34
2839 2863 4.391523 TGATTTCAATTCAGCGTCAATCGA 59.608 37.500 0.00 0.00 42.86 3.59
2840 2864 4.944962 TTTCAATTCAGCGTCAATCGAT 57.055 36.364 0.00 0.00 42.86 3.59
2841 2865 4.944962 TTCAATTCAGCGTCAATCGATT 57.055 36.364 4.39 4.39 42.86 3.34
2842 2866 4.944962 TCAATTCAGCGTCAATCGATTT 57.055 36.364 8.21 0.00 42.86 2.17
2843 2867 4.897224 TCAATTCAGCGTCAATCGATTTC 58.103 39.130 8.21 4.05 42.86 2.17
2844 2868 4.631377 TCAATTCAGCGTCAATCGATTTCT 59.369 37.500 8.21 0.72 42.86 2.52
2845 2869 5.810074 TCAATTCAGCGTCAATCGATTTCTA 59.190 36.000 8.21 0.00 42.86 2.10
2846 2870 6.312672 TCAATTCAGCGTCAATCGATTTCTAA 59.687 34.615 8.21 0.00 42.86 2.10
2847 2871 6.662414 ATTCAGCGTCAATCGATTTCTAAA 57.338 33.333 8.21 0.00 42.86 1.85
2848 2872 6.662414 TTCAGCGTCAATCGATTTCTAAAT 57.338 33.333 8.21 0.00 42.86 1.40
2849 2873 6.036246 TCAGCGTCAATCGATTTCTAAATG 57.964 37.500 8.21 4.02 42.86 2.32
2850 2874 5.810074 TCAGCGTCAATCGATTTCTAAATGA 59.190 36.000 8.21 6.30 42.86 2.57
2851 2875 6.019559 TCAGCGTCAATCGATTTCTAAATGAG 60.020 38.462 8.21 0.00 42.86 2.90
2852 2876 5.235186 AGCGTCAATCGATTTCTAAATGAGG 59.765 40.000 8.21 8.44 42.86 3.86
2853 2877 5.559035 GCGTCAATCGATTTCTAAATGAGGG 60.559 44.000 8.21 0.00 42.86 4.30
2854 2878 5.753438 CGTCAATCGATTTCTAAATGAGGGA 59.247 40.000 8.21 0.00 42.86 4.20
2855 2879 6.257849 CGTCAATCGATTTCTAAATGAGGGAA 59.742 38.462 8.21 0.00 42.86 3.97
2856 2880 7.517417 CGTCAATCGATTTCTAAATGAGGGAAG 60.517 40.741 8.21 0.00 42.86 3.46
2857 2881 7.495934 GTCAATCGATTTCTAAATGAGGGAAGA 59.504 37.037 8.21 0.00 0.00 2.87
2858 2882 8.046708 TCAATCGATTTCTAAATGAGGGAAGAA 58.953 33.333 8.21 0.00 0.00 2.52
2859 2883 8.341173 CAATCGATTTCTAAATGAGGGAAGAAG 58.659 37.037 8.21 0.00 30.19 2.85
2860 2884 7.182817 TCGATTTCTAAATGAGGGAAGAAGA 57.817 36.000 0.00 0.00 30.19 2.87
2861 2885 7.620880 TCGATTTCTAAATGAGGGAAGAAGAA 58.379 34.615 0.00 0.00 30.19 2.52
2862 2886 7.766278 TCGATTTCTAAATGAGGGAAGAAGAAG 59.234 37.037 0.00 0.00 30.19 2.85
2863 2887 7.550906 CGATTTCTAAATGAGGGAAGAAGAAGT 59.449 37.037 0.00 0.00 30.19 3.01
2864 2888 9.892130 GATTTCTAAATGAGGGAAGAAGAAGTA 57.108 33.333 0.00 0.00 30.19 2.24
2866 2890 9.726438 TTTCTAAATGAGGGAAGAAGAAGTAAG 57.274 33.333 0.00 0.00 30.19 2.34
2867 2891 7.852263 TCTAAATGAGGGAAGAAGAAGTAAGG 58.148 38.462 0.00 0.00 0.00 2.69
2868 2892 6.704056 AAATGAGGGAAGAAGAAGTAAGGA 57.296 37.500 0.00 0.00 0.00 3.36
2869 2893 5.948742 ATGAGGGAAGAAGAAGTAAGGAG 57.051 43.478 0.00 0.00 0.00 3.69
2870 2894 5.011982 TGAGGGAAGAAGAAGTAAGGAGA 57.988 43.478 0.00 0.00 0.00 3.71
2871 2895 5.403512 TGAGGGAAGAAGAAGTAAGGAGAA 58.596 41.667 0.00 0.00 0.00 2.87
2872 2896 5.482175 TGAGGGAAGAAGAAGTAAGGAGAAG 59.518 44.000 0.00 0.00 0.00 2.85
2873 2897 4.780554 AGGGAAGAAGAAGTAAGGAGAAGG 59.219 45.833 0.00 0.00 0.00 3.46
2874 2898 4.080807 GGGAAGAAGAAGTAAGGAGAAGGG 60.081 50.000 0.00 0.00 0.00 3.95
2875 2899 4.080807 GGAAGAAGAAGTAAGGAGAAGGGG 60.081 50.000 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.221422 TCTATGTCGCCGCTGCCC 62.221 66.667 0.00 0.00 0.00 5.36
95 96 2.982744 GAAGAACAAGGGCAGGCGC 61.983 63.158 0.00 0.00 37.44 6.53
184 185 3.414700 GTCACTTCTGTGCCGGCG 61.415 66.667 23.90 7.87 43.49 6.46
198 199 4.626402 ACCCCGTCTTCCCGGTCA 62.626 66.667 0.00 0.00 46.66 4.02
199 200 4.078516 CACCCCGTCTTCCCGGTC 62.079 72.222 0.00 0.00 46.66 4.79
200 201 4.626402 TCACCCCGTCTTCCCGGT 62.626 66.667 0.00 0.00 46.66 5.28
202 203 4.430765 CGTCACCCCGTCTTCCCG 62.431 72.222 0.00 0.00 0.00 5.14
203 204 4.754667 GCGTCACCCCGTCTTCCC 62.755 72.222 0.00 0.00 0.00 3.97
247 248 1.220206 CAGCTTCTGCCCATCGTCT 59.780 57.895 0.00 0.00 40.80 4.18
252 253 3.664888 TGGCCAGCTTCTGCCCAT 61.665 61.111 0.00 0.00 40.80 4.00
277 278 0.599991 TACCACTGTTCAGCACGCAG 60.600 55.000 0.00 0.00 36.41 5.18
281 282 0.955919 GGGCTACCACTGTTCAGCAC 60.956 60.000 0.00 0.67 35.69 4.40
397 398 2.101965 CGCGCTCTCTGACAGGAG 59.898 66.667 5.56 13.61 34.88 3.69
468 469 0.321034 GACGAAGCCCTACCGGTTTT 60.321 55.000 15.04 0.00 34.72 2.43
472 473 2.183555 GTGACGAAGCCCTACCGG 59.816 66.667 0.00 0.00 0.00 5.28
482 483 3.047280 GCCGTGCATGGTGACGAA 61.047 61.111 25.67 0.00 37.81 3.85
566 567 0.698238 TCCCTCAACCTTGGGTCATG 59.302 55.000 0.00 0.00 43.74 3.07
567 568 0.995024 CTCCCTCAACCTTGGGTCAT 59.005 55.000 0.00 0.00 43.74 3.06
727 732 2.680370 GGACGAGGGAGGGCCATTT 61.680 63.158 6.18 0.00 35.15 2.32
764 769 0.650476 CAACAAGCGTGTCGTTGTCG 60.650 55.000 5.55 0.00 36.80 4.35
781 786 0.466543 ACGAACAGTGTAGGTGCCAA 59.533 50.000 0.00 0.00 0.00 4.52
782 787 0.466543 AACGAACAGTGTAGGTGCCA 59.533 50.000 0.00 0.00 0.00 4.92
783 788 2.064014 GTAACGAACAGTGTAGGTGCC 58.936 52.381 0.00 0.00 0.00 5.01
814 819 0.687354 GGAGAGGCCAAGAAGTGTGA 59.313 55.000 5.01 0.00 36.34 3.58
824 829 3.312736 AAACAAGAAAAGGAGAGGCCA 57.687 42.857 5.01 0.00 40.02 5.36
825 830 3.636764 TGAAAACAAGAAAAGGAGAGGCC 59.363 43.478 0.00 0.00 0.00 5.19
826 831 4.097892 TGTGAAAACAAGAAAAGGAGAGGC 59.902 41.667 0.00 0.00 0.00 4.70
827 832 5.358160 AGTGTGAAAACAAGAAAAGGAGAGG 59.642 40.000 0.00 0.00 0.00 3.69
828 833 6.442513 AGTGTGAAAACAAGAAAAGGAGAG 57.557 37.500 0.00 0.00 0.00 3.20
829 834 6.659242 AGAAGTGTGAAAACAAGAAAAGGAGA 59.341 34.615 0.00 0.00 0.00 3.71
830 835 6.856895 AGAAGTGTGAAAACAAGAAAAGGAG 58.143 36.000 0.00 0.00 0.00 3.69
831 836 6.834168 AGAAGTGTGAAAACAAGAAAAGGA 57.166 33.333 0.00 0.00 0.00 3.36
832 837 6.311200 CCAAGAAGTGTGAAAACAAGAAAAGG 59.689 38.462 0.00 0.00 0.00 3.11
833 838 6.183360 GCCAAGAAGTGTGAAAACAAGAAAAG 60.183 38.462 0.00 0.00 0.00 2.27
834 839 5.637387 GCCAAGAAGTGTGAAAACAAGAAAA 59.363 36.000 0.00 0.00 0.00 2.29
835 840 5.167845 GCCAAGAAGTGTGAAAACAAGAAA 58.832 37.500 0.00 0.00 0.00 2.52
836 841 4.381505 GGCCAAGAAGTGTGAAAACAAGAA 60.382 41.667 0.00 0.00 0.00 2.52
837 842 3.130340 GGCCAAGAAGTGTGAAAACAAGA 59.870 43.478 0.00 0.00 0.00 3.02
838 843 3.131046 AGGCCAAGAAGTGTGAAAACAAG 59.869 43.478 5.01 0.00 0.00 3.16
839 844 3.096092 AGGCCAAGAAGTGTGAAAACAA 58.904 40.909 5.01 0.00 0.00 2.83
840 845 2.687935 GAGGCCAAGAAGTGTGAAAACA 59.312 45.455 5.01 0.00 0.00 2.83
841 846 2.952310 AGAGGCCAAGAAGTGTGAAAAC 59.048 45.455 5.01 0.00 0.00 2.43
842 847 3.214328 GAGAGGCCAAGAAGTGTGAAAA 58.786 45.455 5.01 0.00 0.00 2.29
843 848 2.487265 GGAGAGGCCAAGAAGTGTGAAA 60.487 50.000 5.01 0.00 36.34 2.69
844 849 1.072331 GGAGAGGCCAAGAAGTGTGAA 59.928 52.381 5.01 0.00 36.34 3.18
845 850 0.687354 GGAGAGGCCAAGAAGTGTGA 59.313 55.000 5.01 0.00 36.34 3.58
846 851 0.689623 AGGAGAGGCCAAGAAGTGTG 59.310 55.000 5.01 0.00 40.02 3.82
847 852 1.439543 AAGGAGAGGCCAAGAAGTGT 58.560 50.000 5.01 0.00 40.02 3.55
848 853 2.575805 AAAGGAGAGGCCAAGAAGTG 57.424 50.000 5.01 0.00 40.02 3.16
849 854 2.713708 AGAAAAGGAGAGGCCAAGAAGT 59.286 45.455 5.01 0.00 40.02 3.01
850 855 3.431673 AGAAAAGGAGAGGCCAAGAAG 57.568 47.619 5.01 0.00 40.02 2.85
851 856 3.117512 ACAAGAAAAGGAGAGGCCAAGAA 60.118 43.478 5.01 0.00 40.02 2.52
852 857 2.443255 ACAAGAAAAGGAGAGGCCAAGA 59.557 45.455 5.01 0.00 40.02 3.02
853 858 2.868899 ACAAGAAAAGGAGAGGCCAAG 58.131 47.619 5.01 0.00 40.02 3.61
854 859 3.312736 AACAAGAAAAGGAGAGGCCAA 57.687 42.857 5.01 0.00 40.02 4.52
864 869 6.183360 GCCAAGAAGTGTGAAAACAAGAAAAG 60.183 38.462 0.00 0.00 0.00 2.27
896 901 2.485814 GTGCCATCTCAAGTTCTCAACC 59.514 50.000 0.00 0.00 0.00 3.77
898 903 2.106338 TGGTGCCATCTCAAGTTCTCAA 59.894 45.455 0.00 0.00 0.00 3.02
899 904 1.699083 TGGTGCCATCTCAAGTTCTCA 59.301 47.619 0.00 0.00 0.00 3.27
900 905 2.479566 TGGTGCCATCTCAAGTTCTC 57.520 50.000 0.00 0.00 0.00 2.87
901 906 2.996631 GATGGTGCCATCTCAAGTTCT 58.003 47.619 20.63 0.00 46.67 3.01
948 955 1.059098 ATGGTGCACTGAAGGAGACA 58.941 50.000 17.98 2.75 0.00 3.41
964 971 0.324614 TGGTGCACCAGTGACTATGG 59.675 55.000 34.74 0.00 42.01 2.74
1013 1020 3.839051 AGAAGAAGAAAAGAATGCGGC 57.161 42.857 0.00 0.00 0.00 6.53
1014 1021 5.619625 AGAAGAAGAAGAAAAGAATGCGG 57.380 39.130 0.00 0.00 0.00 5.69
1015 1022 6.896969 AGAAGAAGAAGAAGAAAAGAATGCG 58.103 36.000 0.00 0.00 0.00 4.73
1016 1023 8.567104 AGAAGAAGAAGAAGAAGAAAAGAATGC 58.433 33.333 0.00 0.00 0.00 3.56
1019 1026 9.898152 AGAAGAAGAAGAAGAAGAAGAAAAGAA 57.102 29.630 0.00 0.00 0.00 2.52
1020 1027 9.898152 AAGAAGAAGAAGAAGAAGAAGAAAAGA 57.102 29.630 0.00 0.00 0.00 2.52
1022 1029 9.898152 AGAAGAAGAAGAAGAAGAAGAAGAAAA 57.102 29.630 0.00 0.00 0.00 2.29
1023 1030 9.898152 AAGAAGAAGAAGAAGAAGAAGAAGAAA 57.102 29.630 0.00 0.00 0.00 2.52
1024 1031 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1025 1032 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1026 1033 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1027 1034 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1028 1035 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1029 1036 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1030 1037 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1031 1038 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1032 1039 9.196552 GAGAAGAAGAAGAAGAAGAAGAAGAAG 57.803 37.037 0.00 0.00 0.00 2.85
1033 1040 8.147704 GGAGAAGAAGAAGAAGAAGAAGAAGAA 58.852 37.037 0.00 0.00 0.00 2.52
1034 1041 7.256154 GGGAGAAGAAGAAGAAGAAGAAGAAGA 60.256 40.741 0.00 0.00 0.00 2.87
1035 1042 6.873605 GGGAGAAGAAGAAGAAGAAGAAGAAG 59.126 42.308 0.00 0.00 0.00 2.85
1036 1043 6.556874 AGGGAGAAGAAGAAGAAGAAGAAGAA 59.443 38.462 0.00 0.00 0.00 2.52
1037 1044 6.081356 AGGGAGAAGAAGAAGAAGAAGAAGA 58.919 40.000 0.00 0.00 0.00 2.87
1038 1045 6.358974 AGGGAGAAGAAGAAGAAGAAGAAG 57.641 41.667 0.00 0.00 0.00 2.85
1039 1046 5.247337 GGAGGGAGAAGAAGAAGAAGAAGAA 59.753 44.000 0.00 0.00 0.00 2.52
1066 1073 1.669440 GGTCTAGTGCGTGGTGGAA 59.331 57.895 0.00 0.00 0.00 3.53
1080 1087 4.287067 ACATTCAGTACATTGACTGGGTCT 59.713 41.667 12.99 0.00 45.79 3.85
1098 1105 7.537649 TCGCTCGAGACATTATATTGTACATTC 59.462 37.037 18.75 0.00 0.00 2.67
1104 1111 5.440234 AGTCGCTCGAGACATTATATTGT 57.560 39.130 18.75 0.00 43.24 2.71
1105 1112 5.983790 GAGTCGCTCGAGACATTATATTG 57.016 43.478 18.75 0.00 43.24 1.90
1169 1176 2.025418 GGTGGGTTGCGACTGTACG 61.025 63.158 3.59 0.00 0.00 3.67
1170 1177 1.070105 TGGTGGGTTGCGACTGTAC 59.930 57.895 3.59 1.08 0.00 2.90
1171 1178 1.070105 GTGGTGGGTTGCGACTGTA 59.930 57.895 3.59 0.00 0.00 2.74
1172 1179 2.203153 GTGGTGGGTTGCGACTGT 60.203 61.111 3.59 0.00 0.00 3.55
1173 1180 2.203139 TGTGGTGGGTTGCGACTG 60.203 61.111 3.59 0.00 0.00 3.51
1174 1181 2.111043 CTGTGGTGGGTTGCGACT 59.889 61.111 3.59 0.00 0.00 4.18
1175 1182 2.978010 CCTGTGGTGGGTTGCGAC 60.978 66.667 0.00 0.00 0.00 5.19
1176 1183 2.951475 GAACCTGTGGTGGGTTGCGA 62.951 60.000 2.70 0.00 45.78 5.10
1177 1184 2.518349 AACCTGTGGTGGGTTGCG 60.518 61.111 0.00 0.00 44.34 4.85
1178 1185 1.152756 AGAACCTGTGGTGGGTTGC 60.153 57.895 2.70 0.00 45.78 4.17
1179 1186 0.106719 ACAGAACCTGTGGTGGGTTG 60.107 55.000 2.70 0.00 45.78 3.77
1180 1187 0.629058 AACAGAACCTGTGGTGGGTT 59.371 50.000 0.00 0.00 44.62 4.11
1181 1188 0.106719 CAACAGAACCTGTGGTGGGT 60.107 55.000 0.00 0.00 44.62 4.51
1182 1189 1.455383 GCAACAGAACCTGTGGTGGG 61.455 60.000 0.00 0.00 44.62 4.61
1183 1190 1.785041 CGCAACAGAACCTGTGGTGG 61.785 60.000 7.05 0.00 44.62 4.61
1184 1191 1.648720 CGCAACAGAACCTGTGGTG 59.351 57.895 0.00 0.60 44.62 4.17
1185 1192 2.186826 GCGCAACAGAACCTGTGGT 61.187 57.895 0.30 0.00 44.62 4.16
1186 1193 2.186160 TGCGCAACAGAACCTGTGG 61.186 57.895 8.16 0.00 44.62 4.17
1187 1194 3.419828 TGCGCAACAGAACCTGTG 58.580 55.556 8.16 0.00 44.62 3.66
1195 1202 0.936297 GCAAGAAACCTGCGCAACAG 60.936 55.000 13.05 5.80 46.77 3.16
1196 1203 1.065600 GCAAGAAACCTGCGCAACA 59.934 52.632 13.05 0.00 0.00 3.33
1197 1204 1.661509 GGCAAGAAACCTGCGCAAC 60.662 57.895 13.05 0.64 0.00 4.17
1198 1205 2.727544 GGCAAGAAACCTGCGCAA 59.272 55.556 13.05 0.00 0.00 4.85
1199 1206 3.294493 GGGCAAGAAACCTGCGCA 61.294 61.111 10.98 10.98 40.52 6.09
1200 1207 4.056125 GGGGCAAGAAACCTGCGC 62.056 66.667 0.00 0.00 40.16 6.09
1201 1208 2.597217 TGGGGCAAGAAACCTGCG 60.597 61.111 0.00 0.00 0.00 5.18
1202 1209 2.919494 CGTGGGGCAAGAAACCTGC 61.919 63.158 0.00 0.00 0.00 4.85
1203 1210 2.268076 CCGTGGGGCAAGAAACCTG 61.268 63.158 0.00 0.00 0.00 4.00
1204 1211 2.115266 CCGTGGGGCAAGAAACCT 59.885 61.111 0.00 0.00 0.00 3.50
1218 1225 3.599285 TTCGAAATCAGGCCGCCGT 62.599 57.895 3.05 0.00 0.00 5.68
1219 1226 2.813179 CTTCGAAATCAGGCCGCCG 61.813 63.158 3.05 0.00 0.00 6.46
1225 1232 1.065126 AGGAAGGGCTTCGAAATCAGG 60.065 52.381 0.00 0.00 40.37 3.86
1228 1235 2.943690 GGTTAGGAAGGGCTTCGAAATC 59.056 50.000 0.00 0.00 40.37 2.17
1229 1236 2.679930 CGGTTAGGAAGGGCTTCGAAAT 60.680 50.000 0.00 0.00 40.37 2.17
1233 1240 1.153429 CCGGTTAGGAAGGGCTTCG 60.153 63.158 0.00 0.00 45.00 3.79
1234 1241 0.327259 AACCGGTTAGGAAGGGCTTC 59.673 55.000 20.78 0.00 45.00 3.86
1266 1273 0.040157 CAGGCACGTTGTCAACCATG 60.040 55.000 10.12 9.68 0.00 3.66
1335 1342 5.551233 CACTGGAGAGTGGTATCTTTGAAA 58.449 41.667 0.00 0.00 45.26 2.69
1411 1418 2.767505 CTCTGGGTAAGTGTGGTGAAC 58.232 52.381 0.00 0.00 0.00 3.18
1414 1421 0.687354 AGCTCTGGGTAAGTGTGGTG 59.313 55.000 0.00 0.00 0.00 4.17
1416 1423 1.625818 AGAAGCTCTGGGTAAGTGTGG 59.374 52.381 0.00 0.00 0.00 4.17
1420 1427 0.615850 GGCAGAAGCTCTGGGTAAGT 59.384 55.000 12.98 0.00 44.43 2.24
1421 1428 0.615331 TGGCAGAAGCTCTGGGTAAG 59.385 55.000 12.98 0.00 44.43 2.34
1429 1436 0.813821 GGGAACAATGGCAGAAGCTC 59.186 55.000 0.00 0.00 41.70 4.09
1431 1438 2.657297 TGGGAACAATGGCAGAAGC 58.343 52.632 0.00 0.00 37.44 3.86
1460 1467 1.335324 GCAGTTGCAGGTGTGACATTC 60.335 52.381 0.00 0.00 41.59 2.67
1463 1470 3.826221 GCAGTTGCAGGTGTGACA 58.174 55.556 0.00 0.00 41.59 3.58
1473 1480 2.939103 CAAGGGTACTAGATGCAGTTGC 59.061 50.000 0.00 0.00 42.50 4.17
1474 1481 3.535561 CCAAGGGTACTAGATGCAGTTG 58.464 50.000 0.00 0.00 0.00 3.16
1476 1483 2.119495 CCCAAGGGTACTAGATGCAGT 58.881 52.381 0.00 0.00 0.00 4.40
1480 1487 3.545703 CTTTGCCCAAGGGTACTAGATG 58.454 50.000 7.05 0.00 37.65 2.90
1483 1490 1.282157 AGCTTTGCCCAAGGGTACTAG 59.718 52.381 7.05 3.85 37.65 2.57
1484 1491 1.004277 CAGCTTTGCCCAAGGGTACTA 59.996 52.381 7.05 0.00 37.65 1.82
1488 1495 2.919328 GCAGCTTTGCCCAAGGGT 60.919 61.111 7.05 0.00 37.65 4.34
1512 1519 2.359478 AACGTCCGGAATGCACCC 60.359 61.111 5.23 0.00 0.00 4.61
1513 1520 2.686816 CCAACGTCCGGAATGCACC 61.687 63.158 5.23 0.00 0.00 5.01
1533 1540 3.454375 CGTGGTGCGAGGATTATAGTTT 58.546 45.455 0.00 0.00 44.77 2.66
1535 1542 1.269621 GCGTGGTGCGAGGATTATAGT 60.270 52.381 0.00 0.00 44.77 2.12
1572 1579 0.388907 TTAGTGTTACCAGCGCGGAC 60.389 55.000 22.10 12.53 38.63 4.79
1603 1610 5.233083 TGATCAAATCTGTGTCCTTCACT 57.767 39.130 0.00 0.00 46.27 3.41
1623 1630 3.568430 TCTTCAGTCGTCTGTTTAGCTGA 59.432 43.478 9.48 0.00 41.91 4.26
1660 1667 2.231215 AGCATGTAGATTGGTCGAGC 57.769 50.000 7.89 7.89 0.00 5.03
1663 1670 4.183865 TCTTCAAGCATGTAGATTGGTCG 58.816 43.478 0.00 0.00 43.65 4.79
1704 1711 0.321653 GAGACAGCGAACCCCAATGT 60.322 55.000 0.00 0.00 0.00 2.71
1707 1714 2.342279 CGAGACAGCGAACCCCAA 59.658 61.111 0.00 0.00 0.00 4.12
1753 1760 3.821841 GACTATTGGTCCAACTTTTGCG 58.178 45.455 6.41 0.00 38.93 4.85
1773 1780 2.885135 ATTCTGCAATGTCCTGTGGA 57.115 45.000 0.00 0.00 0.00 4.02
1774 1781 2.821378 TGAATTCTGCAATGTCCTGTGG 59.179 45.455 7.05 0.00 0.00 4.17
1775 1782 4.508461 TTGAATTCTGCAATGTCCTGTG 57.492 40.909 7.05 0.00 0.00 3.66
1777 1784 6.218019 TCTTTTTGAATTCTGCAATGTCCTG 58.782 36.000 7.05 0.00 0.00 3.86
1779 1786 6.312180 GGATCTTTTTGAATTCTGCAATGTCC 59.688 38.462 7.05 3.97 0.00 4.02
1786 1793 4.569564 GGCATGGATCTTTTTGAATTCTGC 59.430 41.667 7.05 3.38 0.00 4.26
1787 1794 5.726397 TGGCATGGATCTTTTTGAATTCTG 58.274 37.500 7.05 0.00 0.00 3.02
1795 1802 3.259123 GGACTGTTGGCATGGATCTTTTT 59.741 43.478 0.00 0.00 0.00 1.94
1797 1804 2.450476 GGACTGTTGGCATGGATCTTT 58.550 47.619 0.00 0.00 0.00 2.52
1815 1822 0.762082 CATCTCTAGCTGCCTGGGGA 60.762 60.000 0.00 0.00 33.20 4.81
1820 1827 2.913463 AGCACATCTCTAGCTGCCT 58.087 52.632 0.00 0.00 37.20 4.75
1883 1890 9.073475 TCTGGCTTAAATGTAAAACAACATAGT 57.927 29.630 0.00 0.00 39.16 2.12
1884 1891 9.559958 CTCTGGCTTAAATGTAAAACAACATAG 57.440 33.333 0.00 0.00 39.16 2.23
1971 1987 7.402054 TCCATACATTTCTTGATTGGTACACT 58.598 34.615 0.00 0.00 39.29 3.55
1977 1993 6.964807 TCCATCCATACATTTCTTGATTGG 57.035 37.500 0.00 0.00 34.35 3.16
1980 1996 6.208797 CAGCATCCATCCATACATTTCTTGAT 59.791 38.462 0.00 0.00 0.00 2.57
2208 2228 3.604772 CGGATTAATTCTAACAGCTGCGC 60.605 47.826 15.27 0.00 0.00 6.09
2210 2230 4.212214 CCTCGGATTAATTCTAACAGCTGC 59.788 45.833 15.27 0.00 0.00 5.25
2211 2231 5.360591 ACCTCGGATTAATTCTAACAGCTG 58.639 41.667 13.48 13.48 0.00 4.24
2220 2240 3.714391 ACAGCGTACCTCGGATTAATTC 58.286 45.455 0.00 0.00 40.26 2.17
2228 2248 0.456221 AGATCAACAGCGTACCTCGG 59.544 55.000 0.00 0.00 40.26 4.63
2230 2250 2.541178 CGGTAGATCAACAGCGTACCTC 60.541 54.545 0.00 0.00 32.45 3.85
2257 2277 4.218200 CCTGACCATGAATGTGTTTGCTTA 59.782 41.667 0.00 0.00 0.00 3.09
2264 2284 2.909006 AGAGTCCTGACCATGAATGTGT 59.091 45.455 0.00 0.00 0.00 3.72
2274 2294 2.427812 GGCAGTTACTAGAGTCCTGACC 59.572 54.545 11.49 8.90 32.22 4.02
2348 2368 9.530633 AATTAGAACTAGCCTATAGTTTCGTTG 57.469 33.333 0.00 0.00 37.83 4.10
2360 2380 9.131791 TGAAACTTGAAAAATTAGAACTAGCCT 57.868 29.630 0.00 0.00 0.00 4.58
2373 2393 7.978975 AGATTCGTTGGAATGAAACTTGAAAAA 59.021 29.630 0.00 0.00 42.86 1.94
2465 2485 1.194781 TCTTCCTCCTGCTCACCACC 61.195 60.000 0.00 0.00 0.00 4.61
2510 2533 4.585526 TGATGCCGGCGTCGATCC 62.586 66.667 36.51 19.08 39.00 3.36
2511 2534 3.330853 GTGATGCCGGCGTCGATC 61.331 66.667 36.51 26.30 39.00 3.69
2520 2543 2.819595 CCCAGAACCGTGATGCCG 60.820 66.667 0.00 0.00 0.00 5.69
2527 2550 2.203788 TGCCTCTCCCAGAACCGT 60.204 61.111 0.00 0.00 0.00 4.83
2529 2552 1.566298 ATGGTGCCTCTCCCAGAACC 61.566 60.000 0.00 0.00 33.39 3.62
2577 2600 1.218763 CTGAAGCATCTCCATCTGCG 58.781 55.000 0.00 0.00 43.17 5.18
2587 2610 5.715070 ACTGTAGTCTTACACTGAAGCATC 58.285 41.667 0.00 0.00 34.91 3.91
2600 2623 9.382275 GTAGACTAGCTAACTAACTGTAGTCTT 57.618 37.037 12.34 0.58 39.79 3.01
2618 2641 4.713824 TTTGATCACACCGGTAGACTAG 57.286 45.455 6.87 0.00 0.00 2.57
2722 2746 4.278669 TCAGACTAACAGCCGATCCTAATC 59.721 45.833 0.00 0.00 0.00 1.75
2741 2765 0.681564 GAGAGGGAGAAGGCGTCAGA 60.682 60.000 2.69 0.00 0.00 3.27
2742 2766 0.682855 AGAGAGGGAGAAGGCGTCAG 60.683 60.000 2.69 0.00 0.00 3.51
2743 2767 0.967887 CAGAGAGGGAGAAGGCGTCA 60.968 60.000 2.69 0.00 0.00 4.35
2744 2768 0.968393 ACAGAGAGGGAGAAGGCGTC 60.968 60.000 0.00 0.00 0.00 5.19
2745 2769 1.077625 ACAGAGAGGGAGAAGGCGT 59.922 57.895 0.00 0.00 0.00 5.68
2746 2770 1.254284 ACACAGAGAGGGAGAAGGCG 61.254 60.000 0.00 0.00 0.00 5.52
2747 2771 0.534873 GACACAGAGAGGGAGAAGGC 59.465 60.000 0.00 0.00 0.00 4.35
2748 2772 1.190643 GGACACAGAGAGGGAGAAGG 58.809 60.000 0.00 0.00 0.00 3.46
2749 2773 1.190643 GGGACACAGAGAGGGAGAAG 58.809 60.000 0.00 0.00 0.00 2.85
2750 2774 0.787084 AGGGACACAGAGAGGGAGAA 59.213 55.000 0.00 0.00 0.00 2.87
2751 2775 0.040351 CAGGGACACAGAGAGGGAGA 59.960 60.000 0.00 0.00 0.00 3.71
2752 2776 0.252012 ACAGGGACACAGAGAGGGAG 60.252 60.000 0.00 0.00 0.00 4.30
2753 2777 1.081481 TACAGGGACACAGAGAGGGA 58.919 55.000 0.00 0.00 0.00 4.20
2754 2778 2.035632 GATACAGGGACACAGAGAGGG 58.964 57.143 0.00 0.00 0.00 4.30
2755 2779 2.035632 GGATACAGGGACACAGAGAGG 58.964 57.143 0.00 0.00 0.00 3.69
2756 2780 2.035632 GGGATACAGGGACACAGAGAG 58.964 57.143 0.00 0.00 39.74 3.20
2757 2781 1.646447 AGGGATACAGGGACACAGAGA 59.354 52.381 0.00 0.00 39.74 3.10
2758 2782 2.166907 AGGGATACAGGGACACAGAG 57.833 55.000 0.00 0.00 39.74 3.35
2759 2783 2.467880 GAAGGGATACAGGGACACAGA 58.532 52.381 0.00 0.00 39.74 3.41
2760 2784 1.486726 GGAAGGGATACAGGGACACAG 59.513 57.143 0.00 0.00 39.74 3.66
2761 2785 1.580059 GGAAGGGATACAGGGACACA 58.420 55.000 0.00 0.00 39.74 3.72
2762 2786 0.837940 GGGAAGGGATACAGGGACAC 59.162 60.000 0.00 0.00 39.74 3.67
2763 2787 0.722676 AGGGAAGGGATACAGGGACA 59.277 55.000 0.00 0.00 39.74 4.02
2764 2788 1.894699 AAGGGAAGGGATACAGGGAC 58.105 55.000 0.00 0.00 39.74 4.46
2765 2789 4.311208 AATAAGGGAAGGGATACAGGGA 57.689 45.455 0.00 0.00 39.74 4.20
2766 2790 6.524545 TTAAATAAGGGAAGGGATACAGGG 57.475 41.667 0.00 0.00 39.74 4.45
2767 2791 8.224720 TGAATTAAATAAGGGAAGGGATACAGG 58.775 37.037 0.00 0.00 39.74 4.00
2768 2792 9.289782 CTGAATTAAATAAGGGAAGGGATACAG 57.710 37.037 0.00 0.00 39.74 2.74
2769 2793 8.787818 ACTGAATTAAATAAGGGAAGGGATACA 58.212 33.333 0.00 0.00 39.74 2.29
2770 2794 9.642343 AACTGAATTAAATAAGGGAAGGGATAC 57.358 33.333 0.00 0.00 0.00 2.24
2773 2797 9.695155 CTAAACTGAATTAAATAAGGGAAGGGA 57.305 33.333 0.00 0.00 0.00 4.20
2774 2798 8.414003 GCTAAACTGAATTAAATAAGGGAAGGG 58.586 37.037 0.00 0.00 0.00 3.95
2775 2799 9.190317 AGCTAAACTGAATTAAATAAGGGAAGG 57.810 33.333 0.00 0.00 0.00 3.46
2815 2839 4.727179 CGATTGACGCTGAATTGAAATCAG 59.273 41.667 5.90 5.90 45.65 2.90
2816 2840 4.391523 TCGATTGACGCTGAATTGAAATCA 59.608 37.500 0.00 0.00 42.26 2.57
2817 2841 4.897224 TCGATTGACGCTGAATTGAAATC 58.103 39.130 0.00 0.00 42.26 2.17
2818 2842 4.944962 TCGATTGACGCTGAATTGAAAT 57.055 36.364 0.00 0.00 42.26 2.17
2819 2843 4.944962 ATCGATTGACGCTGAATTGAAA 57.055 36.364 0.00 0.00 42.26 2.69
2820 2844 4.944962 AATCGATTGACGCTGAATTGAA 57.055 36.364 10.50 0.00 42.26 2.69
2821 2845 4.631377 AGAAATCGATTGACGCTGAATTGA 59.369 37.500 12.25 0.00 42.26 2.57
2822 2846 4.901814 AGAAATCGATTGACGCTGAATTG 58.098 39.130 12.25 0.00 42.26 2.32
2823 2847 6.662414 TTAGAAATCGATTGACGCTGAATT 57.338 33.333 12.25 0.00 42.26 2.17
2824 2848 6.662414 TTTAGAAATCGATTGACGCTGAAT 57.338 33.333 12.25 0.00 42.26 2.57
2825 2849 6.312672 TCATTTAGAAATCGATTGACGCTGAA 59.687 34.615 12.25 10.06 42.26 3.02
2826 2850 5.810074 TCATTTAGAAATCGATTGACGCTGA 59.190 36.000 12.25 8.20 42.26 4.26
2827 2851 6.036246 TCATTTAGAAATCGATTGACGCTG 57.964 37.500 12.25 6.05 42.26 5.18
2828 2852 5.235186 CCTCATTTAGAAATCGATTGACGCT 59.765 40.000 12.25 9.45 42.26 5.07
2829 2853 5.435557 CCTCATTTAGAAATCGATTGACGC 58.564 41.667 12.25 2.12 42.26 5.19
2830 2854 5.753438 TCCCTCATTTAGAAATCGATTGACG 59.247 40.000 12.25 0.00 44.09 4.35
2831 2855 7.495934 TCTTCCCTCATTTAGAAATCGATTGAC 59.504 37.037 12.25 9.27 0.00 3.18
2832 2856 7.564793 TCTTCCCTCATTTAGAAATCGATTGA 58.435 34.615 12.25 2.37 0.00 2.57
2833 2857 7.792374 TCTTCCCTCATTTAGAAATCGATTG 57.208 36.000 12.25 0.00 0.00 2.67
2834 2858 8.267894 TCTTCTTCCCTCATTTAGAAATCGATT 58.732 33.333 4.39 4.39 0.00 3.34
2835 2859 7.796054 TCTTCTTCCCTCATTTAGAAATCGAT 58.204 34.615 0.00 0.00 0.00 3.59
2836 2860 7.182817 TCTTCTTCCCTCATTTAGAAATCGA 57.817 36.000 0.00 0.00 0.00 3.59
2837 2861 7.550906 ACTTCTTCTTCCCTCATTTAGAAATCG 59.449 37.037 0.00 0.00 0.00 3.34
2838 2862 8.800370 ACTTCTTCTTCCCTCATTTAGAAATC 57.200 34.615 0.00 0.00 0.00 2.17
2840 2864 9.726438 CTTACTTCTTCTTCCCTCATTTAGAAA 57.274 33.333 0.00 0.00 0.00 2.52
2841 2865 8.322091 CCTTACTTCTTCTTCCCTCATTTAGAA 58.678 37.037 0.00 0.00 0.00 2.10
2842 2866 7.678598 TCCTTACTTCTTCTTCCCTCATTTAGA 59.321 37.037 0.00 0.00 0.00 2.10
2843 2867 7.852263 TCCTTACTTCTTCTTCCCTCATTTAG 58.148 38.462 0.00 0.00 0.00 1.85
2844 2868 7.678598 TCTCCTTACTTCTTCTTCCCTCATTTA 59.321 37.037 0.00 0.00 0.00 1.40
2845 2869 6.502158 TCTCCTTACTTCTTCTTCCCTCATTT 59.498 38.462 0.00 0.00 0.00 2.32
2846 2870 6.026186 TCTCCTTACTTCTTCTTCCCTCATT 58.974 40.000 0.00 0.00 0.00 2.57
2847 2871 5.594777 TCTCCTTACTTCTTCTTCCCTCAT 58.405 41.667 0.00 0.00 0.00 2.90
2848 2872 5.011982 TCTCCTTACTTCTTCTTCCCTCA 57.988 43.478 0.00 0.00 0.00 3.86
2849 2873 5.105106 CCTTCTCCTTACTTCTTCTTCCCTC 60.105 48.000 0.00 0.00 0.00 4.30
2850 2874 4.780554 CCTTCTCCTTACTTCTTCTTCCCT 59.219 45.833 0.00 0.00 0.00 4.20
2851 2875 4.080807 CCCTTCTCCTTACTTCTTCTTCCC 60.081 50.000 0.00 0.00 0.00 3.97
2852 2876 4.080807 CCCCTTCTCCTTACTTCTTCTTCC 60.081 50.000 0.00 0.00 0.00 3.46
2853 2877 5.092554 CCCCTTCTCCTTACTTCTTCTTC 57.907 47.826 0.00 0.00 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.