Multiple sequence alignment - TraesCS4D01G022700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G022700 chr4D 100.000 5197 0 0 1 5197 9561420 9566616 0.000000e+00 9598.0
1 TraesCS4D01G022700 chr4D 77.311 119 19 4 4610 4726 455738309 455738197 4.340000e-06 63.9
2 TraesCS4D01G022700 chr4A 93.244 2250 89 26 768 2999 593765446 593763242 0.000000e+00 3254.0
3 TraesCS4D01G022700 chr4A 89.428 1277 64 32 3967 5191 593762234 593760977 0.000000e+00 1544.0
4 TraesCS4D01G022700 chr4A 86.825 1351 92 52 2645 3966 593763596 593762303 0.000000e+00 1430.0
5 TraesCS4D01G022700 chr4A 94.667 450 19 4 197 644 593766139 593765693 0.000000e+00 693.0
6 TraesCS4D01G022700 chr4B 90.068 1480 81 30 196 1630 38614121 38615579 0.000000e+00 1858.0
7 TraesCS4D01G022700 chr4B 92.830 1311 47 12 1676 2973 18423969 18425245 0.000000e+00 1857.0
8 TraesCS4D01G022700 chr4B 90.028 1454 97 39 197 1630 18422543 18423968 0.000000e+00 1838.0
9 TraesCS4D01G022700 chr4B 95.460 771 23 8 1676 2441 38615580 38616343 0.000000e+00 1219.0
10 TraesCS4D01G022700 chr4B 86.585 820 60 17 3052 3828 18425243 18426055 0.000000e+00 859.0
11 TraesCS4D01G022700 chr4B 84.825 659 49 21 3967 4600 18426206 18426838 2.660000e-172 616.0
12 TraesCS4D01G022700 chr4B 95.455 88 4 0 3879 3966 18426055 18426142 1.950000e-29 141.0
13 TraesCS4D01G022700 chr5A 78.328 909 129 41 1731 2611 98034977 98035845 4.610000e-145 525.0
14 TraesCS4D01G022700 chr5A 81.395 172 26 3 3351 3516 98036801 98036972 9.080000e-28 135.0
15 TraesCS4D01G022700 chr5A 81.481 81 11 3 3171 3249 98036629 98036707 4.340000e-06 63.9
16 TraesCS4D01G022700 chr5A 96.875 32 1 0 1049 1080 98034250 98034281 3.000000e-03 54.7
17 TraesCS4D01G022700 chr5B 76.632 1057 169 53 1585 2611 111202657 111201649 3.590000e-141 512.0
18 TraesCS4D01G022700 chr5B 77.394 376 66 12 1047 1412 111203209 111202843 6.820000e-49 206.0
19 TraesCS4D01G022700 chr5B 81.977 172 25 3 3351 3516 111200666 111200495 1.950000e-29 141.0
20 TraesCS4D01G022700 chr5B 86.111 72 9 1 4661 4731 83701517 83701446 5.580000e-10 76.8
21 TraesCS4D01G022700 chr5B 81.481 81 11 3 3171 3249 111200841 111200763 4.340000e-06 63.9
22 TraesCS4D01G022700 chr5B 100.000 29 0 0 1052 1080 111203246 111203218 3.000000e-03 54.7
23 TraesCS4D01G022700 chr5D 77.560 918 132 48 1731 2617 102034184 102033310 2.180000e-133 486.0
24 TraesCS4D01G022700 chr5D 79.472 341 47 13 1047 1375 102034869 102034540 2.440000e-53 220.0
25 TraesCS4D01G022700 chr5D 81.395 172 26 3 3351 3516 102032353 102032182 9.080000e-28 135.0
26 TraesCS4D01G022700 chr5D 82.716 81 10 3 3171 3249 102032528 102032450 9.340000e-08 69.4
27 TraesCS4D01G022700 chr5D 100.000 29 0 0 1052 1080 102034906 102034878 3.000000e-03 54.7
28 TraesCS4D01G022700 chr3B 88.421 95 10 1 4633 4726 82824291 82824385 4.250000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G022700 chr4D 9561420 9566616 5196 False 9598.00 9598 100.0000 1 5197 1 chr4D.!!$F1 5196
1 TraesCS4D01G022700 chr4A 593760977 593766139 5162 True 1730.25 3254 91.0410 197 5191 4 chr4A.!!$R1 4994
2 TraesCS4D01G022700 chr4B 38614121 38616343 2222 False 1538.50 1858 92.7640 196 2441 2 chr4B.!!$F2 2245
3 TraesCS4D01G022700 chr4B 18422543 18426838 4295 False 1062.20 1857 89.9446 197 4600 5 chr4B.!!$F1 4403

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
265 267 0.038310 AGCAAGCCCACCCTTTCTAC 59.962 55.0 0.00 0.0 0.00 2.59 F
691 738 0.109597 GCATTGTCTGGAACTTGCCG 60.110 55.0 0.00 0.0 33.95 5.69 F
807 854 0.598065 GACAGCCATGACAAACACCC 59.402 55.0 0.00 0.0 0.00 4.61 F
2249 2398 1.123077 TGAGAGGCACACACACTCTT 58.877 50.0 0.00 0.0 41.38 2.85 F
3000 3166 0.035881 ATGGACAGAGTGCACCAGTG 59.964 55.0 14.63 11.1 36.59 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1393 1537 3.010200 AGGCCAAAATTGTTTGCCAAA 57.990 38.095 5.01 0.00 42.44 3.28 R
2322 2472 1.622607 CGGGGCTCCCTGTGATAACA 61.623 60.000 0.00 0.00 42.67 2.41 R
2600 2755 4.699735 TGACGTAAGGAAGTACCATAACGA 59.300 41.667 0.00 0.00 46.39 3.85 R
4066 4403 0.178891 AGATGGTGGTGACCTCCTGT 60.179 55.000 22.00 11.74 43.58 4.00 R
4865 5265 0.670546 CGTTTGGTGACCGAGCTCAT 60.671 55.000 15.40 0.00 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 108 9.543018 GGTAAACACTGAAAAATAAGAAGATCG 57.457 33.333 0.00 0.00 0.00 3.69
111 112 8.480643 ACACTGAAAAATAAGAAGATCGTAGG 57.519 34.615 0.00 0.00 0.00 3.18
112 113 8.311836 ACACTGAAAAATAAGAAGATCGTAGGA 58.688 33.333 0.00 0.00 0.00 2.94
113 114 9.151471 CACTGAAAAATAAGAAGATCGTAGGAA 57.849 33.333 0.00 0.00 0.00 3.36
114 115 9.720769 ACTGAAAAATAAGAAGATCGTAGGAAA 57.279 29.630 0.00 0.00 0.00 3.13
115 116 9.974750 CTGAAAAATAAGAAGATCGTAGGAAAC 57.025 33.333 0.00 0.00 0.00 2.78
126 127 2.333926 CGTAGGAAACGTTCATGCTCA 58.666 47.619 0.00 0.00 46.72 4.26
127 128 2.345641 CGTAGGAAACGTTCATGCTCAG 59.654 50.000 0.00 0.00 46.72 3.35
128 129 2.550830 AGGAAACGTTCATGCTCAGT 57.449 45.000 0.00 0.00 0.00 3.41
129 130 2.146342 AGGAAACGTTCATGCTCAGTG 58.854 47.619 0.00 0.00 0.00 3.66
130 131 1.400242 GGAAACGTTCATGCTCAGTGC 60.400 52.381 0.00 0.00 43.25 4.40
131 132 0.593128 AAACGTTCATGCTCAGTGCC 59.407 50.000 0.00 0.00 42.00 5.01
132 133 0.534877 AACGTTCATGCTCAGTGCCA 60.535 50.000 0.00 0.00 42.00 4.92
133 134 0.952497 ACGTTCATGCTCAGTGCCAG 60.952 55.000 0.00 0.00 42.00 4.85
134 135 1.505353 GTTCATGCTCAGTGCCAGC 59.495 57.895 0.00 0.00 42.00 4.85
135 136 2.036571 TTCATGCTCAGTGCCAGCG 61.037 57.895 0.00 0.00 40.01 5.18
136 137 2.435410 CATGCTCAGTGCCAGCGA 60.435 61.111 0.00 0.00 40.01 4.93
137 138 1.818363 CATGCTCAGTGCCAGCGAT 60.818 57.895 0.00 0.00 40.01 4.58
138 139 1.818363 ATGCTCAGTGCCAGCGATG 60.818 57.895 0.00 0.00 40.01 3.84
139 140 2.125391 GCTCAGTGCCAGCGATGA 60.125 61.111 0.06 0.00 35.15 2.92
140 141 1.742880 GCTCAGTGCCAGCGATGAA 60.743 57.895 0.06 0.00 35.15 2.57
141 142 1.975363 GCTCAGTGCCAGCGATGAAC 61.975 60.000 0.06 0.00 35.15 3.18
142 143 0.390866 CTCAGTGCCAGCGATGAACT 60.391 55.000 0.06 2.22 0.00 3.01
143 144 0.671472 TCAGTGCCAGCGATGAACTG 60.671 55.000 22.68 22.68 39.66 3.16
148 149 2.270205 CAGCGATGAACTGGGCCT 59.730 61.111 4.53 0.00 0.00 5.19
149 150 2.110967 CAGCGATGAACTGGGCCTG 61.111 63.158 9.11 9.11 0.00 4.85
150 151 3.512516 GCGATGAACTGGGCCTGC 61.513 66.667 10.71 0.00 0.00 4.85
151 152 3.197790 CGATGAACTGGGCCTGCG 61.198 66.667 10.71 1.66 0.00 5.18
152 153 3.512516 GATGAACTGGGCCTGCGC 61.513 66.667 10.71 0.00 0.00 6.09
153 154 4.349503 ATGAACTGGGCCTGCGCA 62.350 61.111 10.98 10.98 36.38 6.09
168 169 3.947841 GCACGCACGTCTGGCAAA 61.948 61.111 0.00 0.00 0.00 3.68
169 170 2.712539 CACGCACGTCTGGCAAAA 59.287 55.556 0.00 0.00 0.00 2.44
170 171 1.282570 CACGCACGTCTGGCAAAAT 59.717 52.632 0.00 0.00 0.00 1.82
171 172 0.317770 CACGCACGTCTGGCAAAATT 60.318 50.000 0.00 0.00 0.00 1.82
172 173 0.383949 ACGCACGTCTGGCAAAATTT 59.616 45.000 0.00 0.00 0.00 1.82
173 174 1.052287 CGCACGTCTGGCAAAATTTC 58.948 50.000 0.00 0.00 0.00 2.17
174 175 1.418373 GCACGTCTGGCAAAATTTCC 58.582 50.000 0.00 0.00 0.00 3.13
175 176 1.000274 GCACGTCTGGCAAAATTTCCT 60.000 47.619 0.00 0.00 0.00 3.36
176 177 2.664916 CACGTCTGGCAAAATTTCCTG 58.335 47.619 0.00 0.00 0.00 3.86
177 178 2.034558 CACGTCTGGCAAAATTTCCTGT 59.965 45.455 0.00 0.00 0.00 4.00
178 179 2.034558 ACGTCTGGCAAAATTTCCTGTG 59.965 45.455 0.00 0.00 0.00 3.66
179 180 2.607771 CGTCTGGCAAAATTTCCTGTGG 60.608 50.000 0.00 0.00 0.00 4.17
180 181 2.627699 GTCTGGCAAAATTTCCTGTGGA 59.372 45.455 0.00 0.00 0.00 4.02
181 182 2.627699 TCTGGCAAAATTTCCTGTGGAC 59.372 45.455 0.00 0.00 0.00 4.02
182 183 2.629617 CTGGCAAAATTTCCTGTGGACT 59.370 45.455 0.00 0.00 0.00 3.85
183 184 3.037549 TGGCAAAATTTCCTGTGGACTT 58.962 40.909 0.00 0.00 0.00 3.01
184 185 3.181467 TGGCAAAATTTCCTGTGGACTTG 60.181 43.478 0.00 0.00 0.00 3.16
185 186 2.802247 GCAAAATTTCCTGTGGACTTGC 59.198 45.455 0.00 0.00 31.26 4.01
186 187 3.052036 CAAAATTTCCTGTGGACTTGCG 58.948 45.455 0.00 0.00 0.00 4.85
187 188 1.981256 AATTTCCTGTGGACTTGCGT 58.019 45.000 0.00 0.00 0.00 5.24
188 189 1.238439 ATTTCCTGTGGACTTGCGTG 58.762 50.000 0.00 0.00 0.00 5.34
189 190 1.444119 TTTCCTGTGGACTTGCGTGC 61.444 55.000 0.00 0.00 0.00 5.34
190 191 2.591429 CCTGTGGACTTGCGTGCA 60.591 61.111 0.00 0.00 39.30 4.57
191 192 2.186160 CCTGTGGACTTGCGTGCAA 61.186 57.895 7.12 7.12 43.33 4.08
218 219 4.889409 AGCCAATCTGACTGAAACTCAAAA 59.111 37.500 0.00 0.00 0.00 2.44
229 230 7.444183 TGACTGAAACTCAAAATAGGGTTACAG 59.556 37.037 0.00 0.00 0.00 2.74
256 257 1.098050 CCACAAGATAGCAAGCCCAC 58.902 55.000 0.00 0.00 0.00 4.61
259 260 0.257039 CAAGATAGCAAGCCCACCCT 59.743 55.000 0.00 0.00 0.00 4.34
265 267 0.038310 AGCAAGCCCACCCTTTCTAC 59.962 55.000 0.00 0.00 0.00 2.59
455 466 3.124921 GCGTACGGGTGCTTGCAT 61.125 61.111 18.39 0.00 0.00 3.96
641 658 0.179225 CACGCTGTTCATGTTACGCC 60.179 55.000 0.00 0.00 0.00 5.68
644 661 1.352114 GCTGTTCATGTTACGCCGTA 58.648 50.000 0.00 0.00 0.00 4.02
646 663 2.602878 CTGTTCATGTTACGCCGTACT 58.397 47.619 0.00 0.00 0.00 2.73
691 738 0.109597 GCATTGTCTGGAACTTGCCG 60.110 55.000 0.00 0.00 33.95 5.69
692 739 1.238439 CATTGTCTGGAACTTGCCGT 58.762 50.000 0.00 0.00 0.00 5.68
757 804 4.264253 TCTTATGTGCTAACTTGCATGCT 58.736 39.130 20.33 0.00 45.23 3.79
764 811 3.209410 GCTAACTTGCATGCTAGTCCAT 58.791 45.455 30.30 19.49 31.33 3.41
807 854 0.598065 GACAGCCATGACAAACACCC 59.402 55.000 0.00 0.00 0.00 4.61
817 864 5.394443 CCATGACAAACACCCAATAATCCTG 60.394 44.000 0.00 0.00 0.00 3.86
868 1008 5.803118 GTGCGACCAAACACCTTATATAAC 58.197 41.667 0.00 0.00 0.00 1.89
937 1078 3.433598 GCCATAGCATCCAACTCCTACAA 60.434 47.826 0.00 0.00 39.53 2.41
947 1088 7.755373 GCATCCAACTCCTACAATTTTTAACTC 59.245 37.037 0.00 0.00 0.00 3.01
956 1097 7.387948 TCCTACAATTTTTAACTCTCTCTGTGC 59.612 37.037 0.00 0.00 0.00 4.57
966 1107 4.723309 ACTCTCTCTGTGCTTTTGGAATT 58.277 39.130 0.00 0.00 0.00 2.17
969 1110 4.758674 TCTCTCTGTGCTTTTGGAATTCTG 59.241 41.667 5.23 0.00 0.00 3.02
1340 1482 2.104967 CCTGTTCGGGATGTGTACCTA 58.895 52.381 0.00 0.00 0.00 3.08
1366 1508 4.976540 AGGATTATTACACCAGGTAGGC 57.023 45.455 0.00 0.00 43.14 3.93
1416 1561 2.404265 GCAAACAATTTTGGCCTTGC 57.596 45.000 3.32 5.18 42.22 4.01
1646 1792 5.879237 TCATGTGCTTCGGTGATTAATTTC 58.121 37.500 0.00 0.00 0.00 2.17
1687 1833 7.702348 GTGATTAACCAATCTGGAAATGCTTAC 59.298 37.037 0.00 0.00 40.96 2.34
1715 1861 4.024556 CCTTGTCTTGCGTATTCATCCATC 60.025 45.833 0.00 0.00 0.00 3.51
1716 1863 4.406648 TGTCTTGCGTATTCATCCATCT 57.593 40.909 0.00 0.00 0.00 2.90
1781 1930 4.148079 TGGTTTGATGCAAGTACAATCCA 58.852 39.130 17.10 17.10 39.48 3.41
1788 1937 7.878547 TGATGCAAGTACAATCCATTGATTA 57.121 32.000 6.29 0.00 39.20 1.75
1960 2109 7.265599 TGGGTAGTCCATGAGAAGATTAAAA 57.734 36.000 0.00 0.00 41.46 1.52
2249 2398 1.123077 TGAGAGGCACACACACTCTT 58.877 50.000 0.00 0.00 41.38 2.85
2251 2400 2.698274 TGAGAGGCACACACACTCTTTA 59.302 45.455 0.00 0.00 41.38 1.85
2252 2401 3.324846 TGAGAGGCACACACACTCTTTAT 59.675 43.478 0.00 0.00 41.38 1.40
2253 2402 3.668447 AGAGGCACACACACTCTTTATG 58.332 45.455 0.00 0.00 38.36 1.90
2254 2403 3.324846 AGAGGCACACACACTCTTTATGA 59.675 43.478 0.00 0.00 38.36 2.15
2256 2405 4.655963 AGGCACACACACTCTTTATGAAT 58.344 39.130 0.00 0.00 0.00 2.57
2257 2406 4.697352 AGGCACACACACTCTTTATGAATC 59.303 41.667 0.00 0.00 0.00 2.52
2259 2408 5.182001 GGCACACACACTCTTTATGAATCTT 59.818 40.000 0.00 0.00 0.00 2.40
2260 2409 6.310197 GCACACACACTCTTTATGAATCTTC 58.690 40.000 0.00 0.00 0.00 2.87
2261 2410 6.073058 GCACACACACTCTTTATGAATCTTCA 60.073 38.462 0.00 0.00 42.14 3.02
2263 2412 7.961283 CACACACACTCTTTATGAATCTTCATG 59.039 37.037 14.24 1.73 46.68 3.07
2268 2418 7.495279 ACACTCTTTATGAATCTTCATGCTCTC 59.505 37.037 14.24 0.00 46.68 3.20
2289 2439 7.500559 GCTCTCTTTTGTCTGTTATCCCATTAT 59.499 37.037 0.00 0.00 0.00 1.28
2318 2468 9.681062 TTTCCTTTATCCTACTTTGTCTAATGG 57.319 33.333 0.00 0.00 0.00 3.16
2448 2599 5.050091 CGAGAGATAACTGTTGTTGTTGCTT 60.050 40.000 2.69 0.00 37.59 3.91
2614 2769 4.206609 GCGTCATTCTCGTTATGGTACTTC 59.793 45.833 0.00 0.00 0.00 3.01
2618 2773 7.486647 GTCATTCTCGTTATGGTACTTCCTTA 58.513 38.462 0.00 0.00 37.07 2.69
2619 2774 7.434602 GTCATTCTCGTTATGGTACTTCCTTAC 59.565 40.741 0.00 0.00 37.07 2.34
2620 2775 5.490139 TCTCGTTATGGTACTTCCTTACG 57.510 43.478 0.00 0.00 36.80 3.18
2621 2776 4.943705 TCTCGTTATGGTACTTCCTTACGT 59.056 41.667 0.00 0.00 36.81 3.57
2622 2777 5.065218 TCTCGTTATGGTACTTCCTTACGTC 59.935 44.000 0.00 0.00 36.81 4.34
2623 2778 4.699735 TCGTTATGGTACTTCCTTACGTCA 59.300 41.667 0.00 0.00 36.81 4.35
2624 2779 5.357878 TCGTTATGGTACTTCCTTACGTCAT 59.642 40.000 0.00 0.00 36.81 3.06
2625 2780 6.038356 CGTTATGGTACTTCCTTACGTCATT 58.962 40.000 0.00 0.00 37.07 2.57
2626 2781 6.020121 CGTTATGGTACTTCCTTACGTCATTG 60.020 42.308 0.00 0.00 37.07 2.82
2627 2782 4.877378 TGGTACTTCCTTACGTCATTGT 57.123 40.909 0.00 0.00 37.07 2.71
2628 2783 5.217978 TGGTACTTCCTTACGTCATTGTT 57.782 39.130 0.00 0.00 37.07 2.83
2629 2784 5.613329 TGGTACTTCCTTACGTCATTGTTT 58.387 37.500 0.00 0.00 37.07 2.83
2630 2785 6.056884 TGGTACTTCCTTACGTCATTGTTTT 58.943 36.000 0.00 0.00 37.07 2.43
2631 2786 6.543100 TGGTACTTCCTTACGTCATTGTTTTT 59.457 34.615 0.00 0.00 37.07 1.94
2689 2844 1.009829 CCTGCGTACTCTGAAATGCC 58.990 55.000 0.00 0.00 0.00 4.40
2784 2947 9.466497 AGATAGACCAATTTAGATCTTTTTGCA 57.534 29.630 0.00 0.00 0.00 4.08
2786 2949 7.765695 AGACCAATTTAGATCTTTTTGCAGA 57.234 32.000 0.00 0.00 0.00 4.26
2787 2950 7.824672 AGACCAATTTAGATCTTTTTGCAGAG 58.175 34.615 0.00 0.00 0.00 3.35
2788 2951 7.667219 AGACCAATTTAGATCTTTTTGCAGAGA 59.333 33.333 0.00 0.00 0.00 3.10
2810 2976 5.464722 AGAAGAATGCATTATGTCTGCTACG 59.535 40.000 12.97 0.00 40.34 3.51
2865 3031 8.088365 AGTTGCTGGAAGTTATTTATTTGTTCC 58.912 33.333 0.00 0.00 35.30 3.62
2884 3050 7.709269 TGTTCCTAGCGTTCATATAATTGTC 57.291 36.000 0.00 0.00 0.00 3.18
2912 3078 4.891168 TGCATAGCATGTGATTTTGGATCT 59.109 37.500 0.00 0.00 31.71 2.75
2940 3106 6.403878 TGCACCCTCTAGTTAAGTAAACATC 58.596 40.000 0.00 0.00 40.83 3.06
2955 3121 4.483476 AAACATCGAGTACCTTGCAAAC 57.517 40.909 0.00 0.00 0.00 2.93
2957 3123 3.067106 ACATCGAGTACCTTGCAAACAG 58.933 45.455 0.00 0.00 0.00 3.16
2984 3150 5.684704 TCAGTTAGATGGAGGCTTTAATGG 58.315 41.667 0.00 0.00 0.00 3.16
2985 3151 5.428457 TCAGTTAGATGGAGGCTTTAATGGA 59.572 40.000 0.00 0.00 0.00 3.41
2986 3152 5.529060 CAGTTAGATGGAGGCTTTAATGGAC 59.471 44.000 0.00 0.00 0.00 4.02
2987 3153 5.191722 AGTTAGATGGAGGCTTTAATGGACA 59.808 40.000 0.00 0.00 0.00 4.02
2988 3154 4.162040 AGATGGAGGCTTTAATGGACAG 57.838 45.455 0.00 0.00 0.00 3.51
2990 3156 3.634397 TGGAGGCTTTAATGGACAGAG 57.366 47.619 0.00 0.00 0.00 3.35
2991 3157 2.912956 TGGAGGCTTTAATGGACAGAGT 59.087 45.455 0.00 0.00 0.00 3.24
2992 3158 3.274288 GGAGGCTTTAATGGACAGAGTG 58.726 50.000 0.00 0.00 0.00 3.51
2993 3159 2.680339 GAGGCTTTAATGGACAGAGTGC 59.320 50.000 0.00 0.00 0.00 4.40
2999 3165 0.767375 AATGGACAGAGTGCACCAGT 59.233 50.000 14.63 9.81 36.59 4.00
3000 3166 0.035881 ATGGACAGAGTGCACCAGTG 59.964 55.000 14.63 11.10 36.59 3.66
3016 3182 6.428385 CACCAGTGCTAAATCTTAGGAAAG 57.572 41.667 0.00 0.00 0.00 2.62
3017 3183 5.355350 CACCAGTGCTAAATCTTAGGAAAGG 59.645 44.000 0.00 5.78 33.22 3.11
3019 3185 5.189180 CAGTGCTAAATCTTAGGAAAGGCT 58.811 41.667 0.00 0.00 33.22 4.58
3020 3186 5.295540 CAGTGCTAAATCTTAGGAAAGGCTC 59.704 44.000 0.00 0.00 33.22 4.70
3021 3187 4.576873 GTGCTAAATCTTAGGAAAGGCTCC 59.423 45.833 0.00 0.00 45.81 4.70
3031 3197 2.378038 GGAAAGGCTCCATTATGCACA 58.622 47.619 0.00 0.00 44.67 4.57
3032 3198 2.760092 GGAAAGGCTCCATTATGCACAA 59.240 45.455 0.00 0.00 44.67 3.33
3033 3199 3.195396 GGAAAGGCTCCATTATGCACAAA 59.805 43.478 0.00 0.00 44.67 2.83
3034 3200 4.141869 GGAAAGGCTCCATTATGCACAAAT 60.142 41.667 0.00 0.00 44.67 2.32
3035 3201 4.660789 AAGGCTCCATTATGCACAAATC 57.339 40.909 0.00 0.00 0.00 2.17
3036 3202 3.907221 AGGCTCCATTATGCACAAATCT 58.093 40.909 0.00 0.00 0.00 2.40
3037 3203 4.284178 AGGCTCCATTATGCACAAATCTT 58.716 39.130 0.00 0.00 0.00 2.40
3038 3204 4.713321 AGGCTCCATTATGCACAAATCTTT 59.287 37.500 0.00 0.00 0.00 2.52
3039 3205 5.893255 AGGCTCCATTATGCACAAATCTTTA 59.107 36.000 0.00 0.00 0.00 1.85
3040 3206 6.552350 AGGCTCCATTATGCACAAATCTTTAT 59.448 34.615 0.00 0.00 0.00 1.40
3041 3207 7.070322 AGGCTCCATTATGCACAAATCTTTATT 59.930 33.333 0.00 0.00 0.00 1.40
3042 3208 7.712205 GGCTCCATTATGCACAAATCTTTATTT 59.288 33.333 0.00 0.00 35.65 1.40
3043 3209 9.101655 GCTCCATTATGCACAAATCTTTATTTT 57.898 29.630 0.00 0.00 32.87 1.82
3045 3211 8.881743 TCCATTATGCACAAATCTTTATTTTGC 58.118 29.630 0.00 0.00 38.36 3.68
3046 3212 7.847078 CCATTATGCACAAATCTTTATTTTGCG 59.153 33.333 0.00 0.00 39.41 4.85
3047 3213 8.593842 CATTATGCACAAATCTTTATTTTGCGA 58.406 29.630 0.00 0.00 39.41 5.10
3048 3214 8.700722 TTATGCACAAATCTTTATTTTGCGAT 57.299 26.923 0.00 0.00 39.41 4.58
3056 3222 9.438291 CAAATCTTTATTTTGCGATACTGGTAG 57.562 33.333 0.00 0.00 32.87 3.18
3105 3271 5.909610 GTGAAATCTGCAGTTTACTGTGTTC 59.090 40.000 14.67 5.04 45.45 3.18
3142 3320 4.853924 ATTTTTCCTGCAGTACCAGTTG 57.146 40.909 13.81 0.00 0.00 3.16
3143 3321 3.569194 TTTTCCTGCAGTACCAGTTGA 57.431 42.857 13.81 0.00 0.00 3.18
3152 3330 6.252967 TGCAGTACCAGTTGACAAATTATG 57.747 37.500 0.00 0.00 0.00 1.90
3154 3332 6.086222 GCAGTACCAGTTGACAAATTATGTG 58.914 40.000 0.00 0.00 44.12 3.21
3158 3336 6.463995 ACCAGTTGACAAATTATGTGTGTT 57.536 33.333 0.00 0.00 44.12 3.32
3259 3449 1.066358 GGTAGGGCAACAGTAGGTCAC 60.066 57.143 0.00 0.00 39.74 3.67
3263 3453 1.403780 GGGCAACAGTAGGTCACGTAG 60.404 57.143 0.00 0.00 39.74 3.51
3272 3462 4.150098 CAGTAGGTCACGTAGTTTTGCTTC 59.850 45.833 0.00 0.00 41.61 3.86
3285 3475 5.526115 AGTTTTGCTTCTCATGTGACATTG 58.474 37.500 0.00 0.00 0.00 2.82
3302 3492 3.209410 CATTGCTAAAGCTACTCCCCTG 58.791 50.000 3.26 0.00 42.66 4.45
3320 3510 4.466827 CCCTGTCATTCATGAATCCATCA 58.533 43.478 18.16 12.75 43.67 3.07
3496 3687 0.616111 CTCCTGCTGGTAGAGGTGGT 60.616 60.000 9.73 0.00 34.23 4.16
3499 3690 1.152118 TGCTGGTAGAGGTGGTGGT 60.152 57.895 0.00 0.00 0.00 4.16
3572 3763 8.157476 TGAAAGTAATGGATATTCTAGGCTTCC 58.843 37.037 0.00 0.00 0.00 3.46
3573 3764 6.287589 AGTAATGGATATTCTAGGCTTCCG 57.712 41.667 0.00 0.00 0.00 4.30
3658 3852 4.644685 AGCACCAAGTTTAGTGTTGTGAAT 59.355 37.500 5.04 0.00 36.35 2.57
3664 3858 8.567948 ACCAAGTTTAGTGTTGTGAATGAATAG 58.432 33.333 0.00 0.00 0.00 1.73
3693 3891 0.327867 ATGCCTCCATCTTCCTCCCA 60.328 55.000 0.00 0.00 0.00 4.37
3718 3916 2.914059 TGCTTTATAAACTCCGGAGCC 58.086 47.619 31.56 8.73 0.00 4.70
3726 3924 0.251341 AACTCCGGAGCCAATTTGCT 60.251 50.000 31.56 3.22 46.37 3.91
3740 3938 4.142491 CCAATTTGCTAGCACGTGGAATTA 60.142 41.667 26.03 5.41 0.00 1.40
3816 4027 4.706962 GTGCTGGATCCACCTTTATTTTCT 59.293 41.667 11.44 0.00 39.86 2.52
3819 4030 6.951198 TGCTGGATCCACCTTTATTTTCTTTA 59.049 34.615 11.44 0.00 39.86 1.85
3821 4032 7.759886 GCTGGATCCACCTTTATTTTCTTTAAC 59.240 37.037 11.44 0.00 39.86 2.01
3822 4033 8.713708 TGGATCCACCTTTATTTTCTTTAACA 57.286 30.769 11.44 0.00 39.86 2.41
3824 4035 9.419297 GGATCCACCTTTATTTTCTTTAACAAC 57.581 33.333 6.95 0.00 35.41 3.32
3825 4036 9.974980 GATCCACCTTTATTTTCTTTAACAACA 57.025 29.630 0.00 0.00 0.00 3.33
3826 4037 9.981114 ATCCACCTTTATTTTCTTTAACAACAG 57.019 29.630 0.00 0.00 0.00 3.16
3827 4038 7.923878 TCCACCTTTATTTTCTTTAACAACAGC 59.076 33.333 0.00 0.00 0.00 4.40
3828 4039 7.170828 CCACCTTTATTTTCTTTAACAACAGCC 59.829 37.037 0.00 0.00 0.00 4.85
3829 4040 6.921307 ACCTTTATTTTCTTTAACAACAGCCG 59.079 34.615 0.00 0.00 0.00 5.52
3830 4041 6.921307 CCTTTATTTTCTTTAACAACAGCCGT 59.079 34.615 0.00 0.00 0.00 5.68
3831 4042 7.436970 CCTTTATTTTCTTTAACAACAGCCGTT 59.563 33.333 0.00 0.00 35.01 4.44
3832 4043 8.705048 TTTATTTTCTTTAACAACAGCCGTTT 57.295 26.923 0.00 0.00 31.13 3.60
3833 4044 8.705048 TTATTTTCTTTAACAACAGCCGTTTT 57.295 26.923 0.00 0.00 31.13 2.43
3834 4045 7.603963 ATTTTCTTTAACAACAGCCGTTTTT 57.396 28.000 0.00 0.00 31.13 1.94
3835 4046 6.635166 TTTCTTTAACAACAGCCGTTTTTC 57.365 33.333 0.00 0.00 31.13 2.29
3836 4047 5.570234 TCTTTAACAACAGCCGTTTTTCT 57.430 34.783 0.00 0.00 31.13 2.52
3837 4048 5.956642 TCTTTAACAACAGCCGTTTTTCTT 58.043 33.333 0.00 0.00 31.13 2.52
3838 4049 6.391537 TCTTTAACAACAGCCGTTTTTCTTT 58.608 32.000 0.00 0.00 31.13 2.52
3839 4050 6.869388 TCTTTAACAACAGCCGTTTTTCTTTT 59.131 30.769 0.00 0.00 31.13 2.27
3840 4051 7.385478 TCTTTAACAACAGCCGTTTTTCTTTTT 59.615 29.630 0.00 0.00 31.13 1.94
3841 4052 5.524511 AACAACAGCCGTTTTTCTTTTTC 57.475 34.783 0.00 0.00 31.13 2.29
3842 4053 4.561105 ACAACAGCCGTTTTTCTTTTTCA 58.439 34.783 0.00 0.00 31.13 2.69
3843 4054 5.175127 ACAACAGCCGTTTTTCTTTTTCAT 58.825 33.333 0.00 0.00 31.13 2.57
3844 4055 6.334202 ACAACAGCCGTTTTTCTTTTTCATA 58.666 32.000 0.00 0.00 31.13 2.15
3845 4056 6.983890 ACAACAGCCGTTTTTCTTTTTCATAT 59.016 30.769 0.00 0.00 31.13 1.78
3846 4057 7.042791 ACAACAGCCGTTTTTCTTTTTCATATG 60.043 33.333 0.00 0.00 31.13 1.78
3847 4058 5.405269 ACAGCCGTTTTTCTTTTTCATATGC 59.595 36.000 0.00 0.00 0.00 3.14
3848 4059 4.929211 AGCCGTTTTTCTTTTTCATATGCC 59.071 37.500 0.00 0.00 0.00 4.40
3849 4060 4.688413 GCCGTTTTTCTTTTTCATATGCCA 59.312 37.500 0.00 0.00 0.00 4.92
3850 4061 5.178438 GCCGTTTTTCTTTTTCATATGCCAA 59.822 36.000 0.00 0.00 0.00 4.52
3851 4062 6.293135 GCCGTTTTTCTTTTTCATATGCCAAA 60.293 34.615 0.00 0.00 0.00 3.28
3852 4063 7.572910 GCCGTTTTTCTTTTTCATATGCCAAAT 60.573 33.333 0.00 0.00 0.00 2.32
3853 4064 8.288913 CCGTTTTTCTTTTTCATATGCCAAATT 58.711 29.630 0.00 0.00 0.00 1.82
3854 4065 9.105206 CGTTTTTCTTTTTCATATGCCAAATTG 57.895 29.630 0.00 0.00 0.00 2.32
3855 4066 9.949174 GTTTTTCTTTTTCATATGCCAAATTGT 57.051 25.926 0.00 0.00 0.00 2.71
3859 4070 9.558396 TTCTTTTTCATATGCCAAATTGTTTCT 57.442 25.926 0.00 0.00 0.00 2.52
3864 4075 8.422973 TTCATATGCCAAATTGTTTCTAATGC 57.577 30.769 0.00 0.00 0.00 3.56
3865 4076 6.696583 TCATATGCCAAATTGTTTCTAATGCG 59.303 34.615 0.00 0.00 0.00 4.73
3866 4077 2.992543 TGCCAAATTGTTTCTAATGCGC 59.007 40.909 0.00 0.00 0.00 6.09
3867 4078 2.992543 GCCAAATTGTTTCTAATGCGCA 59.007 40.909 14.96 14.96 0.00 6.09
3868 4079 3.181531 GCCAAATTGTTTCTAATGCGCAC 60.182 43.478 14.90 0.00 0.00 5.34
3869 4080 4.236935 CCAAATTGTTTCTAATGCGCACT 58.763 39.130 14.90 3.33 0.00 4.40
3870 4081 4.090354 CCAAATTGTTTCTAATGCGCACTG 59.910 41.667 14.90 5.94 0.00 3.66
3871 4082 4.503741 AATTGTTTCTAATGCGCACTGT 57.496 36.364 14.90 3.24 0.00 3.55
3872 4083 2.967459 TGTTTCTAATGCGCACTGTG 57.033 45.000 14.90 2.76 0.00 3.66
3873 4084 1.535028 TGTTTCTAATGCGCACTGTGG 59.465 47.619 14.90 2.97 0.00 4.17
3874 4085 1.804151 GTTTCTAATGCGCACTGTGGA 59.196 47.619 14.90 5.80 0.00 4.02
3875 4086 2.401583 TTCTAATGCGCACTGTGGAT 57.598 45.000 14.90 0.00 0.00 3.41
3876 4087 3.535280 TTCTAATGCGCACTGTGGATA 57.465 42.857 14.90 0.00 0.00 2.59
3877 4088 3.751479 TCTAATGCGCACTGTGGATAT 57.249 42.857 14.90 0.00 0.00 1.63
3935 4197 2.674852 CAGATTGTCTGTAATGCACGCT 59.325 45.455 0.00 0.00 39.58 5.07
3972 4303 8.043710 CCTATGAAATTCTAGTCAAGTTGTCCT 58.956 37.037 2.11 3.16 0.00 3.85
4038 4375 8.380099 AGTAAACCTGTGGTCATATAGTGAAAA 58.620 33.333 0.00 0.00 38.90 2.29
4055 4392 6.360618 AGTGAAAACTCTTCTCATTGGTTCT 58.639 36.000 0.00 0.00 0.00 3.01
4056 4393 7.509546 AGTGAAAACTCTTCTCATTGGTTCTA 58.490 34.615 0.00 0.00 0.00 2.10
4057 4394 8.160106 AGTGAAAACTCTTCTCATTGGTTCTAT 58.840 33.333 0.00 0.00 0.00 1.98
4058 4395 9.436957 GTGAAAACTCTTCTCATTGGTTCTATA 57.563 33.333 0.00 0.00 0.00 1.31
4090 4430 0.687354 AGGTCACCACCATCTGACAC 59.313 55.000 0.00 0.00 46.68 3.67
4094 4434 2.046292 TCACCACCATCTGACACTGAA 58.954 47.619 0.00 0.00 0.00 3.02
4423 4778 3.023119 ACTGAGCCACAATTGTGTTTGA 58.977 40.909 31.20 15.65 44.21 2.69
4475 4830 5.221126 GCCTTTAACTTGCTCCATGAATAGG 60.221 44.000 0.00 0.00 0.00 2.57
4481 4836 4.225942 ACTTGCTCCATGAATAGGTTCTCA 59.774 41.667 0.00 0.00 35.33 3.27
4484 4839 5.188434 TGCTCCATGAATAGGTTCTCAAAG 58.812 41.667 0.00 0.00 35.33 2.77
4538 4906 4.620982 TGTGATACACAATGCTATCGGAG 58.379 43.478 1.99 0.00 41.69 4.63
4600 4968 5.845391 TTTTGTTTGGAGGTAGGAAACTG 57.155 39.130 0.00 0.00 43.88 3.16
4652 5022 9.474920 TCATCAAAAGTCACATTTTTATGTTCC 57.525 29.630 6.18 0.00 36.14 3.62
4703 5073 4.517952 TGAAGGCATAAAACACATGTGG 57.482 40.909 28.64 11.54 34.19 4.17
4713 5083 8.227119 GCATAAAACACATGTGGGTAAATTTTC 58.773 33.333 28.64 10.09 34.19 2.29
4727 5097 6.034577 GGGTAAATTTTCAGAGCAAAATACGC 59.965 38.462 0.00 0.00 35.35 4.42
4732 5102 3.319137 TCAGAGCAAAATACGCTGACT 57.681 42.857 0.00 0.00 40.63 3.41
4733 5103 2.995939 TCAGAGCAAAATACGCTGACTG 59.004 45.455 0.00 0.00 40.63 3.51
4744 5114 0.167470 CGCTGACTGTGCCAAATCTG 59.833 55.000 0.00 0.00 0.00 2.90
4763 5133 4.352009 TCTGGGGCATTTTAACACATGAT 58.648 39.130 0.00 0.00 0.00 2.45
4764 5134 5.514169 TCTGGGGCATTTTAACACATGATA 58.486 37.500 0.00 0.00 0.00 2.15
4765 5135 6.135454 TCTGGGGCATTTTAACACATGATAT 58.865 36.000 0.00 0.00 0.00 1.63
4766 5136 6.610830 TCTGGGGCATTTTAACACATGATATT 59.389 34.615 0.00 0.00 0.00 1.28
4767 5137 6.815089 TGGGGCATTTTAACACATGATATTC 58.185 36.000 0.00 0.00 0.00 1.75
4768 5138 6.382282 TGGGGCATTTTAACACATGATATTCA 59.618 34.615 0.00 0.00 0.00 2.57
4769 5139 7.093156 TGGGGCATTTTAACACATGATATTCAA 60.093 33.333 0.00 0.00 0.00 2.69
4770 5140 7.439056 GGGGCATTTTAACACATGATATTCAAG 59.561 37.037 0.00 0.00 0.00 3.02
4771 5141 7.042523 GGGCATTTTAACACATGATATTCAAGC 60.043 37.037 0.00 0.00 0.00 4.01
4772 5142 7.042523 GGCATTTTAACACATGATATTCAAGCC 60.043 37.037 0.00 0.00 0.00 4.35
4773 5143 7.492020 GCATTTTAACACATGATATTCAAGCCA 59.508 33.333 0.00 0.00 0.00 4.75
4774 5144 9.537192 CATTTTAACACATGATATTCAAGCCAT 57.463 29.630 0.00 0.00 0.00 4.40
4775 5145 8.929827 TTTTAACACATGATATTCAAGCCATG 57.070 30.769 0.00 0.00 41.40 3.66
4776 5146 7.878547 TTAACACATGATATTCAAGCCATGA 57.121 32.000 0.00 0.00 38.83 3.07
4806 5176 4.367716 ACAAAACGCATTTTATTGCACG 57.632 36.364 0.00 0.00 42.91 5.34
4807 5177 3.799420 ACAAAACGCATTTTATTGCACGT 59.201 34.783 0.00 0.00 42.91 4.49
4808 5178 4.268884 ACAAAACGCATTTTATTGCACGTT 59.731 33.333 2.10 2.10 44.69 3.99
4891 5291 1.824272 CGGTCACCAAACGTCCGTTC 61.824 60.000 5.44 0.00 37.35 3.95
4892 5292 0.531311 GGTCACCAAACGTCCGTTCT 60.531 55.000 5.44 0.00 37.35 3.01
4893 5293 0.857287 GTCACCAAACGTCCGTTCTC 59.143 55.000 5.44 0.00 37.35 2.87
4894 5294 0.249573 TCACCAAACGTCCGTTCTCC 60.250 55.000 5.44 0.00 37.35 3.71
4952 5353 5.332743 AGAGATGCAACCCAATTCCTTTTA 58.667 37.500 0.00 0.00 0.00 1.52
4989 5390 9.109393 TCTATGCTTATTGTCCAATTTGTCTAC 57.891 33.333 0.00 0.00 32.50 2.59
5004 5405 3.628032 TTGTCTACGAACAAAATGGCACA 59.372 39.130 0.00 0.00 38.47 4.57
5030 5431 6.617371 AGAGGGTGTAGGATCAAAGATATTGT 59.383 38.462 0.00 0.00 0.00 2.71
5043 5444 8.189119 TCAAAGATATTGTTAAGGCCTTGTTT 57.811 30.769 28.77 7.19 0.00 2.83
5093 5494 1.152312 CCCGGTCTGCCCTATAGGT 60.152 63.158 17.72 0.00 38.26 3.08
5094 5495 1.472662 CCCGGTCTGCCCTATAGGTG 61.473 65.000 17.72 10.05 38.26 4.00
5109 5510 1.349067 AGGTGTCTTCGGTTAAGGCT 58.651 50.000 0.00 0.00 40.67 4.58
5139 5540 0.331616 GTTACCCTCCCAAGCCACAT 59.668 55.000 0.00 0.00 0.00 3.21
5145 5546 1.631405 CTCCCAAGCCACATGGAAAA 58.369 50.000 0.87 0.00 40.56 2.29
5146 5547 1.273327 CTCCCAAGCCACATGGAAAAC 59.727 52.381 0.87 0.00 40.56 2.43
5175 5576 3.462678 GCCCTCTCGTCTCACCCC 61.463 72.222 0.00 0.00 0.00 4.95
5191 5592 1.073199 CCCGTGGAAGCAAACCTCT 59.927 57.895 0.00 0.00 0.00 3.69
5192 5593 0.537371 CCCGTGGAAGCAAACCTCTT 60.537 55.000 0.00 0.00 0.00 2.85
5193 5594 0.593128 CCGTGGAAGCAAACCTCTTG 59.407 55.000 0.00 0.00 0.00 3.02
5194 5595 0.040067 CGTGGAAGCAAACCTCTTGC 60.040 55.000 1.19 1.19 45.22 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 82 9.543018 CGATCTTCTTATTTTTCAGTGTTTACC 57.457 33.333 0.00 0.00 0.00 2.85
85 86 8.936864 CCTACGATCTTCTTATTTTTCAGTGTT 58.063 33.333 0.00 0.00 0.00 3.32
86 87 8.311836 TCCTACGATCTTCTTATTTTTCAGTGT 58.688 33.333 0.00 0.00 0.00 3.55
87 88 8.703604 TCCTACGATCTTCTTATTTTTCAGTG 57.296 34.615 0.00 0.00 0.00 3.66
88 89 9.720769 TTTCCTACGATCTTCTTATTTTTCAGT 57.279 29.630 0.00 0.00 0.00 3.41
89 90 9.974750 GTTTCCTACGATCTTCTTATTTTTCAG 57.025 33.333 0.00 0.00 0.00 3.02
107 108 3.123621 CACTGAGCATGAACGTTTCCTAC 59.876 47.826 0.46 0.00 0.00 3.18
108 109 3.325870 CACTGAGCATGAACGTTTCCTA 58.674 45.455 0.46 0.00 0.00 2.94
109 110 2.146342 CACTGAGCATGAACGTTTCCT 58.854 47.619 0.46 0.00 0.00 3.36
110 111 1.400242 GCACTGAGCATGAACGTTTCC 60.400 52.381 0.46 0.00 44.79 3.13
111 112 1.955762 GCACTGAGCATGAACGTTTC 58.044 50.000 0.46 0.00 44.79 2.78
122 123 1.742880 TTCATCGCTGGCACTGAGC 60.743 57.895 0.00 0.00 44.65 4.26
123 124 0.390866 AGTTCATCGCTGGCACTGAG 60.391 55.000 0.00 0.00 0.00 3.35
124 125 0.671472 CAGTTCATCGCTGGCACTGA 60.671 55.000 11.79 0.00 36.74 3.41
125 126 1.642037 CCAGTTCATCGCTGGCACTG 61.642 60.000 10.73 10.73 45.72 3.66
126 127 1.376424 CCAGTTCATCGCTGGCACT 60.376 57.895 0.00 0.00 45.72 4.40
127 128 3.181367 CCAGTTCATCGCTGGCAC 58.819 61.111 0.00 0.00 45.72 5.01
131 132 2.110967 CAGGCCCAGTTCATCGCTG 61.111 63.158 0.00 0.00 0.00 5.18
132 133 2.270205 CAGGCCCAGTTCATCGCT 59.730 61.111 0.00 0.00 0.00 4.93
133 134 3.512516 GCAGGCCCAGTTCATCGC 61.513 66.667 0.00 0.00 0.00 4.58
134 135 3.197790 CGCAGGCCCAGTTCATCG 61.198 66.667 0.00 0.00 0.00 3.84
135 136 3.512516 GCGCAGGCCCAGTTCATC 61.513 66.667 0.30 0.00 0.00 2.92
136 137 4.349503 TGCGCAGGCCCAGTTCAT 62.350 61.111 5.66 0.00 38.85 2.57
151 152 2.731587 ATTTTGCCAGACGTGCGTGC 62.732 55.000 0.67 0.08 0.00 5.34
152 153 0.317770 AATTTTGCCAGACGTGCGTG 60.318 50.000 0.67 0.00 0.00 5.34
153 154 0.383949 AAATTTTGCCAGACGTGCGT 59.616 45.000 0.00 0.00 0.00 5.24
154 155 1.052287 GAAATTTTGCCAGACGTGCG 58.948 50.000 0.00 0.00 0.00 5.34
155 156 1.000274 AGGAAATTTTGCCAGACGTGC 60.000 47.619 0.00 0.00 0.00 5.34
156 157 2.034558 ACAGGAAATTTTGCCAGACGTG 59.965 45.455 0.00 0.00 0.00 4.49
157 158 2.034558 CACAGGAAATTTTGCCAGACGT 59.965 45.455 0.00 0.00 0.00 4.34
158 159 2.607771 CCACAGGAAATTTTGCCAGACG 60.608 50.000 0.00 0.00 0.00 4.18
159 160 2.627699 TCCACAGGAAATTTTGCCAGAC 59.372 45.455 0.00 0.00 0.00 3.51
160 161 2.627699 GTCCACAGGAAATTTTGCCAGA 59.372 45.455 0.00 0.00 31.38 3.86
161 162 2.629617 AGTCCACAGGAAATTTTGCCAG 59.370 45.455 0.00 0.00 31.38 4.85
162 163 2.676748 AGTCCACAGGAAATTTTGCCA 58.323 42.857 0.00 0.00 31.38 4.92
163 164 3.392882 CAAGTCCACAGGAAATTTTGCC 58.607 45.455 0.00 0.00 31.38 4.52
164 165 2.802247 GCAAGTCCACAGGAAATTTTGC 59.198 45.455 0.00 8.84 33.50 3.68
165 166 3.052036 CGCAAGTCCACAGGAAATTTTG 58.948 45.455 0.00 0.00 31.38 2.44
166 167 3.369546 CGCAAGTCCACAGGAAATTTT 57.630 42.857 0.00 0.00 31.38 1.82
182 183 0.958091 ATTGGCTAACTTGCACGCAA 59.042 45.000 4.12 4.12 34.04 4.85
183 184 0.521291 GATTGGCTAACTTGCACGCA 59.479 50.000 0.00 0.00 34.04 5.24
184 185 0.804989 AGATTGGCTAACTTGCACGC 59.195 50.000 0.00 0.00 34.04 5.34
185 186 2.076100 TCAGATTGGCTAACTTGCACG 58.924 47.619 0.00 0.00 34.04 5.34
186 187 3.077359 AGTCAGATTGGCTAACTTGCAC 58.923 45.455 0.00 0.00 25.47 4.57
187 188 3.076621 CAGTCAGATTGGCTAACTTGCA 58.923 45.455 0.00 0.00 26.99 4.08
188 189 3.338249 TCAGTCAGATTGGCTAACTTGC 58.662 45.455 0.00 0.00 26.99 4.01
189 190 5.471456 AGTTTCAGTCAGATTGGCTAACTTG 59.529 40.000 0.00 0.00 26.99 3.16
190 191 5.625150 AGTTTCAGTCAGATTGGCTAACTT 58.375 37.500 0.00 0.00 26.99 2.66
191 192 5.221722 TGAGTTTCAGTCAGATTGGCTAACT 60.222 40.000 7.98 7.98 26.99 2.24
192 193 4.997395 TGAGTTTCAGTCAGATTGGCTAAC 59.003 41.667 0.00 0.00 26.99 2.34
193 194 5.227569 TGAGTTTCAGTCAGATTGGCTAA 57.772 39.130 0.00 0.00 26.99 3.09
194 195 4.890158 TGAGTTTCAGTCAGATTGGCTA 57.110 40.909 0.00 0.00 26.99 3.93
218 219 2.293318 TGGGCCTGTACTGTAACCCTAT 60.293 50.000 17.81 0.00 38.23 2.57
229 230 1.209504 TGCTATCTTGTGGGCCTGTAC 59.790 52.381 4.53 0.00 0.00 2.90
256 257 2.296471 AGGACGCGATATGTAGAAAGGG 59.704 50.000 15.93 0.00 0.00 3.95
259 260 3.263602 CGAGGACGCGATATGTAGAAA 57.736 47.619 15.93 0.00 0.00 2.52
445 456 0.109597 CGAAAGACCATGCAAGCACC 60.110 55.000 0.00 0.00 0.00 5.01
454 465 0.958876 GGTTTCCGGCGAAAGACCAT 60.959 55.000 9.30 0.00 38.66 3.55
455 466 1.598685 GGTTTCCGGCGAAAGACCA 60.599 57.895 9.30 0.00 38.66 4.02
491 502 4.315941 CGCCGGGGATCTAAGCCC 62.316 72.222 14.46 0.00 45.25 5.19
622 639 0.179225 GGCGTAACATGAACAGCGTG 60.179 55.000 0.00 0.00 39.48 5.34
641 658 3.807622 CCAACCTATTGCCACATAGTACG 59.192 47.826 0.00 0.00 34.17 3.67
644 661 4.016444 CAACCAACCTATTGCCACATAGT 58.984 43.478 0.00 0.00 34.17 2.12
646 663 4.013728 GTCAACCAACCTATTGCCACATA 58.986 43.478 0.00 0.00 34.17 2.29
691 738 9.994432 CAATACCAAGAATCAAACAATCTCTAC 57.006 33.333 0.00 0.00 0.00 2.59
692 739 9.958180 TCAATACCAAGAATCAAACAATCTCTA 57.042 29.630 0.00 0.00 0.00 2.43
757 804 7.669722 AGACAAAGCAAAATTTCCTATGGACTA 59.330 33.333 0.00 0.00 0.00 2.59
764 811 7.867403 GTCATGAAGACAAAGCAAAATTTCCTA 59.133 33.333 0.00 0.00 46.77 2.94
807 854 8.600625 CACATGAATTTTCTTGCAGGATTATTG 58.399 33.333 0.00 0.00 36.22 1.90
817 864 7.599998 ACAGGAATAACACATGAATTTTCTTGC 59.400 33.333 0.00 0.00 36.22 4.01
876 1016 8.517878 AGATTGAAAACACTGAAGATGGTAATG 58.482 33.333 0.00 0.00 0.00 1.90
883 1023 9.512588 AAGTCATAGATTGAAAACACTGAAGAT 57.487 29.630 0.00 0.00 35.70 2.40
937 1078 7.285401 TCCAAAAGCACAGAGAGAGTTAAAAAT 59.715 33.333 0.00 0.00 0.00 1.82
947 1088 4.758674 TCAGAATTCCAAAAGCACAGAGAG 59.241 41.667 0.65 0.00 0.00 3.20
956 1097 7.601508 CCCTCTTTGATTTCAGAATTCCAAAAG 59.398 37.037 0.65 9.55 0.00 2.27
966 1107 1.351017 ACGGCCCTCTTTGATTTCAGA 59.649 47.619 0.00 0.00 0.00 3.27
969 1110 3.078837 TGTTACGGCCCTCTTTGATTTC 58.921 45.455 0.00 0.00 0.00 2.17
999 1140 8.512966 TTGCTTTGCCTGTAATTACATACATA 57.487 30.769 18.35 12.84 35.37 2.29
1200 1341 7.494625 TCTTTCGTGAAAAACTAAGTCATCAGT 59.505 33.333 0.00 0.00 0.00 3.41
1340 1482 5.530176 ACCTGGTGTAATAATCCTTTGGT 57.470 39.130 0.00 0.00 0.00 3.67
1393 1537 3.010200 AGGCCAAAATTGTTTGCCAAA 57.990 38.095 5.01 0.00 42.44 3.28
1646 1792 6.873605 TGGTTAATCACACATTCTAGTGACAG 59.126 38.462 0.57 0.00 46.38 3.51
1687 1833 5.794687 TGAATACGCAAGACAAGGTAATG 57.205 39.130 0.00 0.00 43.62 1.90
1810 1959 9.603921 CCAAGCAAATGAATTGTTAGGAATATT 57.396 29.630 0.00 0.00 41.32 1.28
1960 2109 5.992217 AGTACTTGAAATGAACTTCGCTTCT 59.008 36.000 0.00 0.00 0.00 2.85
2238 2387 7.361542 GCATGAAGATTCATAAAGAGTGTGTGT 60.362 37.037 7.71 0.00 45.62 3.72
2249 2398 8.571461 ACAAAAGAGAGCATGAAGATTCATAA 57.429 30.769 7.71 0.00 45.62 1.90
2252 2401 6.148976 CAGACAAAAGAGAGCATGAAGATTCA 59.851 38.462 0.00 0.00 42.14 2.57
2253 2402 6.149142 ACAGACAAAAGAGAGCATGAAGATTC 59.851 38.462 0.00 0.00 0.00 2.52
2254 2403 6.002704 ACAGACAAAAGAGAGCATGAAGATT 58.997 36.000 0.00 0.00 0.00 2.40
2256 2405 4.965814 ACAGACAAAAGAGAGCATGAAGA 58.034 39.130 0.00 0.00 0.00 2.87
2257 2406 5.686159 AACAGACAAAAGAGAGCATGAAG 57.314 39.130 0.00 0.00 0.00 3.02
2259 2408 5.877012 GGATAACAGACAAAAGAGAGCATGA 59.123 40.000 0.00 0.00 0.00 3.07
2260 2409 5.065731 GGGATAACAGACAAAAGAGAGCATG 59.934 44.000 0.00 0.00 0.00 4.06
2261 2410 5.189180 GGGATAACAGACAAAAGAGAGCAT 58.811 41.667 0.00 0.00 0.00 3.79
2262 2411 4.041567 TGGGATAACAGACAAAAGAGAGCA 59.958 41.667 0.00 0.00 0.00 4.26
2263 2412 4.579869 TGGGATAACAGACAAAAGAGAGC 58.420 43.478 0.00 0.00 0.00 4.09
2318 2468 2.952310 GGGCTCCCTGTGATAACAATTC 59.048 50.000 0.00 0.00 0.00 2.17
2322 2472 1.622607 CGGGGCTCCCTGTGATAACA 61.623 60.000 0.00 0.00 42.67 2.41
2600 2755 4.699735 TGACGTAAGGAAGTACCATAACGA 59.300 41.667 0.00 0.00 46.39 3.85
2689 2844 9.719279 GAATGAAGCTTTCAGAATTCTAGATTG 57.281 33.333 7.86 0.00 43.98 2.67
2765 2928 8.517878 TCTTCTCTGCAAAAAGATCTAAATTGG 58.482 33.333 13.70 2.77 0.00 3.16
2784 2947 5.682659 AGCAGACATAATGCATTCTTCTCT 58.317 37.500 16.86 8.87 46.31 3.10
2786 2949 5.464722 CGTAGCAGACATAATGCATTCTTCT 59.535 40.000 16.86 12.76 46.31 2.85
2787 2950 5.674008 CGTAGCAGACATAATGCATTCTTC 58.326 41.667 16.86 10.65 46.31 2.87
2788 2951 5.663795 CGTAGCAGACATAATGCATTCTT 57.336 39.130 16.86 1.71 46.31 2.52
2810 2976 1.602920 GCAAGTTGCAACCTGTTAGGC 60.603 52.381 25.62 14.34 44.26 3.93
2845 3011 7.608761 ACGCTAGGAACAAATAAATAACTTCCA 59.391 33.333 0.00 0.00 31.28 3.53
2865 3031 7.587757 GCAAAAGGACAATTATATGAACGCTAG 59.412 37.037 0.00 0.00 0.00 3.42
2884 3050 5.064198 CCAAAATCACATGCTATGCAAAAGG 59.936 40.000 0.00 0.00 43.62 3.11
2912 3078 7.556996 TGTTTACTTAACTAGAGGGTGCAAAAA 59.443 33.333 0.00 0.00 37.64 1.94
2940 3106 2.479837 TGTCTGTTTGCAAGGTACTCG 58.520 47.619 0.00 0.00 38.49 4.18
2979 3145 1.977854 ACTGGTGCACTCTGTCCATTA 59.022 47.619 17.98 0.00 0.00 1.90
2981 3147 0.035881 CACTGGTGCACTCTGTCCAT 59.964 55.000 17.98 0.00 0.00 3.41
2982 3148 1.447217 CACTGGTGCACTCTGTCCA 59.553 57.895 17.98 3.83 0.00 4.02
2983 3149 4.368391 CACTGGTGCACTCTGTCC 57.632 61.111 17.98 0.00 0.00 4.02
2990 3156 9.427079 CTTTCCTAAGATTTAGCACTGGTGCAC 62.427 44.444 24.57 8.80 45.23 4.57
2991 3157 7.518697 CTTTCCTAAGATTTAGCACTGGTGCA 61.519 42.308 24.57 10.27 45.23 4.57
2992 3158 5.163713 CTTTCCTAAGATTTAGCACTGGTGC 60.164 44.000 16.81 16.81 44.16 5.01
2993 3159 5.355350 CCTTTCCTAAGATTTAGCACTGGTG 59.645 44.000 0.00 0.00 32.92 4.17
2999 3165 4.227300 TGGAGCCTTTCCTAAGATTTAGCA 59.773 41.667 0.00 0.00 46.92 3.49
3000 3166 4.781934 TGGAGCCTTTCCTAAGATTTAGC 58.218 43.478 0.00 0.00 46.92 3.09
3001 3167 9.007901 CATAATGGAGCCTTTCCTAAGATTTAG 57.992 37.037 0.00 0.00 46.92 1.85
3003 3169 6.266330 GCATAATGGAGCCTTTCCTAAGATTT 59.734 38.462 0.00 0.00 46.92 2.17
3004 3170 5.772169 GCATAATGGAGCCTTTCCTAAGATT 59.228 40.000 0.00 0.00 46.92 2.40
3006 3172 4.165950 TGCATAATGGAGCCTTTCCTAAGA 59.834 41.667 0.00 0.00 46.92 2.10
3008 3174 4.207165 GTGCATAATGGAGCCTTTCCTAA 58.793 43.478 0.00 0.00 46.92 2.69
3011 3177 2.378038 TGTGCATAATGGAGCCTTTCC 58.622 47.619 0.00 0.00 46.98 3.13
3013 3179 4.713321 AGATTTGTGCATAATGGAGCCTTT 59.287 37.500 0.00 0.00 0.00 3.11
3014 3180 4.284178 AGATTTGTGCATAATGGAGCCTT 58.716 39.130 0.00 0.00 0.00 4.35
3015 3181 3.907221 AGATTTGTGCATAATGGAGCCT 58.093 40.909 0.00 0.00 0.00 4.58
3016 3182 4.660789 AAGATTTGTGCATAATGGAGCC 57.339 40.909 0.00 0.00 0.00 4.70
3017 3183 8.652810 AAATAAAGATTTGTGCATAATGGAGC 57.347 30.769 0.00 0.00 33.86 4.70
3019 3185 8.881743 GCAAAATAAAGATTTGTGCATAATGGA 58.118 29.630 0.00 0.00 39.42 3.41
3020 3186 7.847078 CGCAAAATAAAGATTTGTGCATAATGG 59.153 33.333 0.00 0.00 40.21 3.16
3021 3187 8.593842 TCGCAAAATAAAGATTTGTGCATAATG 58.406 29.630 0.00 0.00 44.11 1.90
3023 3189 8.700722 ATCGCAAAATAAAGATTTGTGCATAA 57.299 26.923 7.48 0.00 44.11 1.90
3024 3190 9.232082 GTATCGCAAAATAAAGATTTGTGCATA 57.768 29.630 7.48 0.00 44.11 3.14
3025 3191 7.975616 AGTATCGCAAAATAAAGATTTGTGCAT 59.024 29.630 7.48 5.65 44.11 3.96
3026 3192 7.273164 CAGTATCGCAAAATAAAGATTTGTGCA 59.727 33.333 7.48 0.00 44.11 4.57
3027 3193 7.253750 CCAGTATCGCAAAATAAAGATTTGTGC 60.254 37.037 7.48 6.64 44.11 4.57
3028 3194 7.754924 ACCAGTATCGCAAAATAAAGATTTGTG 59.245 33.333 6.28 6.28 45.19 3.33
3029 3195 7.826690 ACCAGTATCGCAAAATAAAGATTTGT 58.173 30.769 0.00 0.00 39.42 2.83
3030 3196 9.438291 CTACCAGTATCGCAAAATAAAGATTTG 57.562 33.333 0.00 0.00 40.04 2.32
3031 3197 8.129211 GCTACCAGTATCGCAAAATAAAGATTT 58.871 33.333 0.00 0.00 36.82 2.17
3032 3198 7.499232 AGCTACCAGTATCGCAAAATAAAGATT 59.501 33.333 0.00 0.00 0.00 2.40
3033 3199 6.992715 AGCTACCAGTATCGCAAAATAAAGAT 59.007 34.615 0.00 0.00 0.00 2.40
3034 3200 6.257849 CAGCTACCAGTATCGCAAAATAAAGA 59.742 38.462 0.00 0.00 0.00 2.52
3035 3201 6.422223 CAGCTACCAGTATCGCAAAATAAAG 58.578 40.000 0.00 0.00 0.00 1.85
3036 3202 5.220777 GCAGCTACCAGTATCGCAAAATAAA 60.221 40.000 0.00 0.00 0.00 1.40
3037 3203 4.272504 GCAGCTACCAGTATCGCAAAATAA 59.727 41.667 0.00 0.00 0.00 1.40
3038 3204 3.807622 GCAGCTACCAGTATCGCAAAATA 59.192 43.478 0.00 0.00 0.00 1.40
3039 3205 2.614057 GCAGCTACCAGTATCGCAAAAT 59.386 45.455 0.00 0.00 0.00 1.82
3040 3206 2.006888 GCAGCTACCAGTATCGCAAAA 58.993 47.619 0.00 0.00 0.00 2.44
3041 3207 1.651987 GCAGCTACCAGTATCGCAAA 58.348 50.000 0.00 0.00 0.00 3.68
3042 3208 0.179084 GGCAGCTACCAGTATCGCAA 60.179 55.000 0.00 0.00 0.00 4.85
3043 3209 1.043116 AGGCAGCTACCAGTATCGCA 61.043 55.000 5.58 0.00 0.00 5.10
3044 3210 0.959553 TAGGCAGCTACCAGTATCGC 59.040 55.000 5.58 0.00 0.00 4.58
3045 3211 3.579709 CAATAGGCAGCTACCAGTATCG 58.420 50.000 5.58 0.00 0.00 2.92
3046 3212 3.330267 GCAATAGGCAGCTACCAGTATC 58.670 50.000 5.58 0.00 43.97 2.24
3047 3213 3.409026 GCAATAGGCAGCTACCAGTAT 57.591 47.619 5.58 0.00 43.97 2.12
3048 3214 2.910688 GCAATAGGCAGCTACCAGTA 57.089 50.000 5.58 0.00 43.97 2.74
3142 3320 6.223138 TCGTGAGAACACACATAATTTGTC 57.777 37.500 0.00 0.00 46.20 3.18
3143 3321 6.612247 TTCGTGAGAACACACATAATTTGT 57.388 33.333 0.00 0.00 46.92 2.83
3158 3336 2.233922 GACCTCCCTGAAATTCGTGAGA 59.766 50.000 7.50 0.00 39.20 3.27
3259 3449 4.211164 TGTCACATGAGAAGCAAAACTACG 59.789 41.667 0.00 0.00 0.00 3.51
3263 3453 4.149396 GCAATGTCACATGAGAAGCAAAAC 59.851 41.667 0.00 0.00 0.00 2.43
3272 3462 4.959596 AGCTTTAGCAATGTCACATGAG 57.040 40.909 0.00 0.00 45.16 2.90
3285 3475 1.831736 TGACAGGGGAGTAGCTTTAGC 59.168 52.381 0.00 0.00 42.49 3.09
3302 3492 6.766944 AGAGAGTTGATGGATTCATGAATGAC 59.233 38.462 25.37 17.19 36.36 3.06
3445 3636 1.092345 GCTCGTCTTCTTCATGCCCC 61.092 60.000 0.00 0.00 0.00 5.80
3545 3736 9.561069 GAAGCCTAGAATATCCATTACTTTCAA 57.439 33.333 0.00 0.00 0.00 2.69
3572 3763 5.462398 AGCTACAGTAAACTTGAAACACTCG 59.538 40.000 0.00 0.00 0.00 4.18
3573 3764 6.702282 AGAGCTACAGTAAACTTGAAACACTC 59.298 38.462 0.00 0.00 0.00 3.51
3658 3852 9.905713 GATGGAGGCATATAAAATACCTATTCA 57.094 33.333 0.00 0.00 0.00 2.57
3664 3858 7.406104 AGGAAGATGGAGGCATATAAAATACC 58.594 38.462 0.00 0.00 0.00 2.73
3670 3865 3.846588 GGGAGGAAGATGGAGGCATATAA 59.153 47.826 0.00 0.00 0.00 0.98
3681 3876 7.771927 ATAAAGCAAATATGGGAGGAAGATG 57.228 36.000 0.00 0.00 0.00 2.90
3693 3891 6.206829 GGCTCCGGAGTTTATAAAGCAAATAT 59.793 38.462 31.43 0.00 0.00 1.28
3718 3916 2.987413 TTCCACGTGCTAGCAAATTG 57.013 45.000 21.29 15.87 0.00 2.32
3726 3924 6.146216 CACAAAACAATAATTCCACGTGCTA 58.854 36.000 10.91 0.00 0.00 3.49
3740 3938 7.616313 TCCTTGTAAAAGGAACACAAAACAAT 58.384 30.769 12.32 0.00 45.45 2.71
3775 3985 5.221224 CCAGCACTTCCTAGTCTCTAATGAG 60.221 48.000 0.00 0.00 41.51 2.90
3787 3998 1.204146 GGTGGATCCAGCACTTCCTA 58.796 55.000 33.83 0.00 43.20 2.94
3816 4027 7.170998 TGAAAAAGAAAAACGGCTGTTGTTAAA 59.829 29.630 13.94 0.00 35.64 1.52
3819 4030 4.991687 TGAAAAAGAAAAACGGCTGTTGTT 59.008 33.333 13.85 13.85 38.25 2.83
3821 4032 5.717038 ATGAAAAAGAAAAACGGCTGTTG 57.283 34.783 12.68 0.00 38.62 3.33
3822 4033 6.073819 GCATATGAAAAAGAAAAACGGCTGTT 60.074 34.615 4.68 4.68 40.98 3.16
3824 4035 5.163963 GGCATATGAAAAAGAAAAACGGCTG 60.164 40.000 6.97 0.00 0.00 4.85
3825 4036 4.929211 GGCATATGAAAAAGAAAAACGGCT 59.071 37.500 6.97 0.00 0.00 5.52
3826 4037 4.688413 TGGCATATGAAAAAGAAAAACGGC 59.312 37.500 6.97 0.00 0.00 5.68
3827 4038 6.777526 TTGGCATATGAAAAAGAAAAACGG 57.222 33.333 6.97 0.00 0.00 4.44
3828 4039 9.105206 CAATTTGGCATATGAAAAAGAAAAACG 57.895 29.630 6.97 0.00 0.00 3.60
3829 4040 9.949174 ACAATTTGGCATATGAAAAAGAAAAAC 57.051 25.926 6.97 0.00 0.00 2.43
3833 4044 9.558396 AGAAACAATTTGGCATATGAAAAAGAA 57.442 25.926 6.97 0.00 0.00 2.52
3838 4049 8.881743 GCATTAGAAACAATTTGGCATATGAAA 58.118 29.630 6.97 0.00 0.00 2.69
3839 4050 7.222417 CGCATTAGAAACAATTTGGCATATGAA 59.778 33.333 6.97 0.00 0.00 2.57
3840 4051 6.696583 CGCATTAGAAACAATTTGGCATATGA 59.303 34.615 6.97 0.00 0.00 2.15
3841 4052 6.562640 GCGCATTAGAAACAATTTGGCATATG 60.563 38.462 0.30 0.00 0.00 1.78
3842 4053 5.463061 GCGCATTAGAAACAATTTGGCATAT 59.537 36.000 0.30 0.00 0.00 1.78
3843 4054 4.803088 GCGCATTAGAAACAATTTGGCATA 59.197 37.500 0.30 0.00 0.00 3.14
3844 4055 3.618150 GCGCATTAGAAACAATTTGGCAT 59.382 39.130 0.30 0.00 0.00 4.40
3845 4056 2.992543 GCGCATTAGAAACAATTTGGCA 59.007 40.909 0.30 0.00 0.00 4.92
3846 4057 2.992543 TGCGCATTAGAAACAATTTGGC 59.007 40.909 5.66 0.00 0.00 4.52
3847 4058 4.090354 CAGTGCGCATTAGAAACAATTTGG 59.910 41.667 15.91 0.00 0.00 3.28
3848 4059 4.681025 ACAGTGCGCATTAGAAACAATTTG 59.319 37.500 15.91 0.00 0.00 2.32
3849 4060 4.681025 CACAGTGCGCATTAGAAACAATTT 59.319 37.500 15.91 0.00 0.00 1.82
3850 4061 4.229096 CACAGTGCGCATTAGAAACAATT 58.771 39.130 15.91 0.00 0.00 2.32
3851 4062 3.366273 CCACAGTGCGCATTAGAAACAAT 60.366 43.478 15.91 0.00 0.00 2.71
3852 4063 2.031245 CCACAGTGCGCATTAGAAACAA 60.031 45.455 15.91 0.00 0.00 2.83
3853 4064 1.535028 CCACAGTGCGCATTAGAAACA 59.465 47.619 15.91 0.00 0.00 2.83
3854 4065 1.804151 TCCACAGTGCGCATTAGAAAC 59.196 47.619 15.91 0.00 0.00 2.78
3855 4066 2.177394 TCCACAGTGCGCATTAGAAA 57.823 45.000 15.91 0.00 0.00 2.52
3856 4067 2.401583 ATCCACAGTGCGCATTAGAA 57.598 45.000 15.91 0.00 0.00 2.10
3857 4068 3.321968 AGATATCCACAGTGCGCATTAGA 59.678 43.478 15.91 7.69 0.00 2.10
3858 4069 3.431233 CAGATATCCACAGTGCGCATTAG 59.569 47.826 15.91 9.44 0.00 1.73
3859 4070 3.392882 CAGATATCCACAGTGCGCATTA 58.607 45.455 15.91 0.00 0.00 1.90
3860 4071 2.216046 CAGATATCCACAGTGCGCATT 58.784 47.619 15.91 6.43 0.00 3.56
3861 4072 1.875009 CAGATATCCACAGTGCGCAT 58.125 50.000 15.91 0.00 0.00 4.73
3862 4073 0.811219 GCAGATATCCACAGTGCGCA 60.811 55.000 5.66 5.66 0.00 6.09
3863 4074 1.502163 GGCAGATATCCACAGTGCGC 61.502 60.000 0.00 0.00 34.86 6.09
3864 4075 0.882042 GGGCAGATATCCACAGTGCG 60.882 60.000 0.00 0.00 34.86 5.34
3865 4076 0.471617 AGGGCAGATATCCACAGTGC 59.528 55.000 0.00 2.16 0.00 4.40
3866 4077 1.764723 TGAGGGCAGATATCCACAGTG 59.235 52.381 0.00 0.00 0.00 3.66
3867 4078 2.180946 TGAGGGCAGATATCCACAGT 57.819 50.000 0.00 0.00 0.00 3.55
3868 4079 2.905085 AGATGAGGGCAGATATCCACAG 59.095 50.000 0.00 0.00 0.00 3.66
3869 4080 2.902486 GAGATGAGGGCAGATATCCACA 59.098 50.000 0.00 0.00 0.00 4.17
3870 4081 2.235898 GGAGATGAGGGCAGATATCCAC 59.764 54.545 0.00 0.00 0.00 4.02
3871 4082 2.113233 AGGAGATGAGGGCAGATATCCA 59.887 50.000 0.00 0.00 0.00 3.41
3872 4083 2.831565 AGGAGATGAGGGCAGATATCC 58.168 52.381 0.00 0.00 0.00 2.59
3873 4084 4.906747 AAAGGAGATGAGGGCAGATATC 57.093 45.455 0.00 0.00 0.00 1.63
3874 4085 4.224818 GCTAAAGGAGATGAGGGCAGATAT 59.775 45.833 0.00 0.00 0.00 1.63
3875 4086 3.580458 GCTAAAGGAGATGAGGGCAGATA 59.420 47.826 0.00 0.00 0.00 1.98
3876 4087 2.371510 GCTAAAGGAGATGAGGGCAGAT 59.628 50.000 0.00 0.00 0.00 2.90
3877 4088 1.765314 GCTAAAGGAGATGAGGGCAGA 59.235 52.381 0.00 0.00 0.00 4.26
3935 4197 6.313519 AGAATTTCATAGGGTAACTCTGCA 57.686 37.500 0.00 0.00 0.00 4.41
4001 4337 3.009143 CACAGGTTTACTCTAGGGCCTTT 59.991 47.826 13.45 0.00 0.00 3.11
4055 4392 6.041637 GTGGTGACCTCCTGTGAACATATATA 59.958 42.308 2.11 0.00 27.82 0.86
4056 4393 4.968719 TGGTGACCTCCTGTGAACATATAT 59.031 41.667 2.11 0.00 0.00 0.86
4057 4394 4.161565 GTGGTGACCTCCTGTGAACATATA 59.838 45.833 2.11 0.00 27.82 0.86
4058 4395 3.055094 GTGGTGACCTCCTGTGAACATAT 60.055 47.826 2.11 0.00 27.82 1.78
4066 4403 0.178891 AGATGGTGGTGACCTCCTGT 60.179 55.000 22.00 11.74 43.58 4.00
4703 5073 6.806739 AGCGTATTTTGCTCTGAAAATTTACC 59.193 34.615 0.00 0.00 38.62 2.85
4713 5083 2.738846 ACAGTCAGCGTATTTTGCTCTG 59.261 45.455 3.11 3.11 41.72 3.35
4727 5097 1.171308 CCCAGATTTGGCACAGTCAG 58.829 55.000 0.00 0.00 43.58 3.51
4744 5114 6.815089 TGAATATCATGTGTTAAAATGCCCC 58.185 36.000 0.00 0.00 0.00 5.80
4852 5252 3.691118 CCGAGCTCATTGGATCTCAAAAA 59.309 43.478 15.40 0.00 36.34 1.94
4865 5265 0.670546 CGTTTGGTGACCGAGCTCAT 60.671 55.000 15.40 0.00 0.00 2.90
4891 5291 7.364585 CCCTCAATATATCAAGCTTCCTAGGAG 60.365 44.444 12.26 7.66 0.00 3.69
4892 5292 6.441924 CCCTCAATATATCAAGCTTCCTAGGA 59.558 42.308 7.62 7.62 0.00 2.94
4893 5293 6.352565 CCCCTCAATATATCAAGCTTCCTAGG 60.353 46.154 0.82 0.82 0.00 3.02
4894 5294 6.441924 TCCCCTCAATATATCAAGCTTCCTAG 59.558 42.308 0.00 0.00 0.00 3.02
4952 5353 9.807649 GGACAATAAGCATAGATGACAAAATTT 57.192 29.630 0.00 0.00 0.00 1.82
4989 5390 2.607771 CCCTCTTGTGCCATTTTGTTCG 60.608 50.000 0.00 0.00 0.00 3.95
5004 5405 7.127955 ACAATATCTTTGATCCTACACCCTCTT 59.872 37.037 0.00 0.00 0.00 2.85
5030 5431 4.707934 GGGCATAACTAAACAAGGCCTTAA 59.292 41.667 20.00 3.18 39.79 1.85
5043 5444 4.347000 GGATCAGTAGGTTGGGCATAACTA 59.653 45.833 0.00 0.00 0.00 2.24
5093 5494 1.344065 TCCAGCCTTAACCGAAGACA 58.656 50.000 0.00 0.00 37.33 3.41
5094 5495 2.678336 CAATCCAGCCTTAACCGAAGAC 59.322 50.000 0.00 0.00 37.33 3.01
5139 5540 2.031465 GGCTCCCGACGTTTTCCA 59.969 61.111 0.00 0.00 0.00 3.53
5165 5566 2.261671 CTTCCACGGGGTGAGACG 59.738 66.667 2.12 0.00 35.23 4.18
5175 5576 0.040067 GCAAGAGGTTTGCTTCCACG 60.040 55.000 4.73 0.00 41.87 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.