Multiple sequence alignment - TraesCS4D01G022500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G022500 chr4D 100.000 3798 0 0 1 3798 9446575 9442778 0.000000e+00 7014.0
1 TraesCS4D01G022500 chr4D 98.361 61 1 0 2682 2742 497895593 497895533 1.440000e-19 108.0
2 TraesCS4D01G022500 chr4D 97.727 44 1 0 3331 3374 9443201 9443158 4.070000e-10 76.8
3 TraesCS4D01G022500 chr4D 97.727 44 1 0 3375 3418 9443245 9443202 4.070000e-10 76.8
4 TraesCS4D01G022500 chr4A 90.304 1186 65 23 932 2093 594002570 594003729 0.000000e+00 1507.0
5 TraesCS4D01G022500 chr4A 81.127 816 74 42 2244 3021 594003817 594004590 7.070000e-162 580.0
6 TraesCS4D01G022500 chr4A 87.143 420 38 2 3379 3798 594004895 594005298 2.670000e-126 462.0
7 TraesCS4D01G022500 chr4A 84.615 494 24 18 442 903 594002032 594002505 9.680000e-121 444.0
8 TraesCS4D01G022500 chr4A 83.742 326 27 16 1 312 594001235 594001548 6.210000e-73 285.0
9 TraesCS4D01G022500 chr4A 90.909 99 3 4 316 414 594001956 594002048 1.110000e-25 128.0
10 TraesCS4D01G022500 chr4A 85.586 111 9 5 2003 2113 594017564 594017667 4.010000e-20 110.0
11 TraesCS4D01G022500 chr4B 89.615 1194 69 28 925 2096 18094061 18092901 0.000000e+00 1467.0
12 TraesCS4D01G022500 chr4B 91.315 426 18 10 3385 3798 17999485 17999067 7.120000e-157 564.0
13 TraesCS4D01G022500 chr4B 84.387 538 43 24 318 840 18094591 18094080 1.230000e-134 490.0
14 TraesCS4D01G022500 chr4B 82.057 418 33 20 2979 3369 17999859 17999457 6.120000e-83 318.0
15 TraesCS4D01G022500 chr4B 87.868 272 16 13 2579 2842 18092130 18091868 1.710000e-78 303.0
16 TraesCS4D01G022500 chr4B 84.804 204 15 9 3530 3723 18091276 18091079 1.390000e-44 191.0
17 TraesCS4D01G022500 chr4B 95.041 121 4 1 1 119 18095073 18094953 5.010000e-44 189.0
18 TraesCS4D01G022500 chr4B 98.361 61 1 0 2682 2742 639123329 639123269 1.440000e-19 108.0
19 TraesCS4D01G022500 chr4B 86.517 89 6 3 192 280 18094661 18094579 4.040000e-15 93.5
20 TraesCS4D01G022500 chr5A 98.361 61 1 0 2682 2742 678202743 678202683 1.440000e-19 108.0
21 TraesCS4D01G022500 chr1D 96.970 33 1 0 2179 2211 409816860 409816828 5.300000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G022500 chr4D 9442778 9446575 3797 True 2389.200000 7014 98.484667 1 3798 3 chr4D.!!$R2 3797
1 TraesCS4D01G022500 chr4A 594001235 594005298 4063 False 567.666667 1507 86.306667 1 3798 6 chr4A.!!$F2 3797
2 TraesCS4D01G022500 chr4B 18091079 18095073 3994 True 455.583333 1467 88.038667 1 3723 6 chr4B.!!$R3 3722
3 TraesCS4D01G022500 chr4B 17999067 17999859 792 True 441.000000 564 86.686000 2979 3798 2 chr4B.!!$R2 819

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
167 183 0.381445 CCATGTGTGTGTGTGTGTGG 59.619 55.0 0.00 0.0 0.00 4.17 F
1596 2355 0.034059 CTCGGCTAGCTAACCCCATG 59.966 60.0 15.72 0.0 0.00 3.66 F
2099 2876 0.034380 AAGCTCTGTCTGCCATGCAT 60.034 50.0 0.00 0.0 38.13 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1866 2629 0.436531 GTACTCGTCGTCGTCTTCGT 59.563 55.0 1.33 0.0 38.33 3.85 R
2458 3401 0.179205 CGACCGTACTCGACTGTTCC 60.179 60.0 0.00 0.0 39.71 3.62 R
3145 4387 0.321564 CGAGGAAGGCATTGGTGTCA 60.322 55.0 0.00 0.0 30.45 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.979197 GCACAGAAGCTGCAGGCAG 61.979 63.158 17.12 16.68 46.15 4.85
70 71 6.040955 TCCATAGATTAGGACAGCTACACAAG 59.959 42.308 0.00 0.00 0.00 3.16
106 107 4.645136 AGCATTGAGGTCGATTCTACTACA 59.355 41.667 0.00 0.00 0.00 2.74
107 108 4.740695 GCATTGAGGTCGATTCTACTACAC 59.259 45.833 0.00 0.00 0.00 2.90
108 109 5.450688 GCATTGAGGTCGATTCTACTACACT 60.451 44.000 0.00 0.00 0.00 3.55
109 110 6.238676 GCATTGAGGTCGATTCTACTACACTA 60.239 42.308 0.00 0.00 0.00 2.74
110 111 6.674694 TTGAGGTCGATTCTACTACACTAC 57.325 41.667 0.00 0.00 0.00 2.73
111 112 4.807834 TGAGGTCGATTCTACTACACTACG 59.192 45.833 0.00 0.00 0.00 3.51
112 113 3.559242 AGGTCGATTCTACTACACTACGC 59.441 47.826 0.00 0.00 0.00 4.42
131 147 3.072468 TCTACCAAGGCCGGACCG 61.072 66.667 1.76 6.99 46.52 4.79
132 148 3.072468 CTACCAAGGCCGGACCGA 61.072 66.667 17.49 0.00 46.52 4.69
133 149 3.072468 TACCAAGGCCGGACCGAG 61.072 66.667 17.49 6.74 46.52 4.63
144 160 4.791069 GACCGAGGGCCCCTACCA 62.791 72.222 21.43 0.00 31.76 3.25
167 183 0.381445 CCATGTGTGTGTGTGTGTGG 59.619 55.000 0.00 0.00 0.00 4.17
203 435 4.378356 GCCAACACACATACACATACACAG 60.378 45.833 0.00 0.00 0.00 3.66
209 441 6.032717 CACACATACACATACACAGAGAGAG 58.967 44.000 0.00 0.00 0.00 3.20
214 446 5.172687 ACACATACACAGAGAGAGAGAGA 57.827 43.478 0.00 0.00 0.00 3.10
215 447 5.185454 ACACATACACAGAGAGAGAGAGAG 58.815 45.833 0.00 0.00 0.00 3.20
219 451 1.935873 CACAGAGAGAGAGAGAGCTCG 59.064 57.143 8.37 0.00 45.98 5.03
220 452 0.940126 CAGAGAGAGAGAGAGCTCGC 59.060 60.000 9.76 9.76 45.98 5.03
223 455 2.368548 AGAGAGAGAGAGAGCTCGCATA 59.631 50.000 20.08 0.00 45.98 3.14
224 456 3.008375 AGAGAGAGAGAGAGCTCGCATAT 59.992 47.826 20.08 4.90 45.98 1.78
226 458 3.073678 GAGAGAGAGAGCTCGCATATGA 58.926 50.000 20.08 0.00 45.98 2.15
229 461 3.156293 AGAGAGAGCTCGCATATGACAT 58.844 45.455 20.08 0.00 45.98 3.06
230 462 3.057386 AGAGAGAGCTCGCATATGACATG 60.057 47.826 20.08 0.00 45.98 3.21
231 463 2.889678 AGAGAGCTCGCATATGACATGA 59.110 45.455 20.08 0.00 34.09 3.07
232 464 3.057386 AGAGAGCTCGCATATGACATGAG 60.057 47.826 20.08 8.39 34.09 2.90
233 465 2.029200 AGAGCTCGCATATGACATGAGG 60.029 50.000 8.37 0.00 0.00 3.86
234 466 0.795085 GCTCGCATATGACATGAGGC 59.205 55.000 6.97 0.00 0.00 4.70
235 467 1.875157 GCTCGCATATGACATGAGGCA 60.875 52.381 6.97 0.00 0.00 4.75
236 468 2.696506 CTCGCATATGACATGAGGCAT 58.303 47.619 6.97 2.71 0.00 4.40
281 513 1.751924 GCTGGGCTAGATAGATACCCG 59.248 57.143 0.43 0.00 44.00 5.28
316 548 4.015406 CTGTGGGCTGTGGCGGTA 62.015 66.667 0.00 0.00 39.81 4.02
317 549 4.323477 TGTGGGCTGTGGCGGTAC 62.323 66.667 0.00 0.00 39.81 3.34
318 550 4.016706 GTGGGCTGTGGCGGTACT 62.017 66.667 0.00 0.00 39.81 2.73
320 552 2.355986 TGGGCTGTGGCGGTACTAG 61.356 63.158 0.00 0.00 39.81 2.57
321 553 2.056223 GGGCTGTGGCGGTACTAGA 61.056 63.158 0.00 0.00 39.81 2.43
399 1033 3.964031 GAGGAGACAGGAGGACATGTAAT 59.036 47.826 0.00 0.00 41.15 1.89
413 1047 6.071952 AGGACATGTAATTACAGTGCCAAAAG 60.072 38.462 22.03 7.16 39.92 2.27
426 1060 1.335689 GCCAAAAGACAGAGCTTGCTG 60.336 52.381 0.00 0.99 41.63 4.41
440 1074 4.712425 GCTGGCTTGCTTGCACCG 62.712 66.667 0.00 0.00 34.04 4.94
475 1109 1.831940 AAGCCTCTTCCCTCCCTCCT 61.832 60.000 0.00 0.00 0.00 3.69
506 1149 1.778591 CCGTCGTTTCAATGCAAACAC 59.221 47.619 0.00 0.00 36.23 3.32
537 1188 1.134037 ACGGAGGCTCCTCTACACTAG 60.134 57.143 29.81 14.04 42.38 2.57
563 1229 0.605083 CAGTAGAGCTGTGGAGTGCA 59.395 55.000 0.00 0.00 40.27 4.57
567 1233 1.566211 AGAGCTGTGGAGTGCAGTAT 58.434 50.000 0.00 0.00 36.42 2.12
568 1234 2.739943 AGAGCTGTGGAGTGCAGTATA 58.260 47.619 0.00 0.00 36.42 1.47
569 1235 2.428890 AGAGCTGTGGAGTGCAGTATAC 59.571 50.000 0.00 0.00 36.42 1.47
570 1236 2.166459 GAGCTGTGGAGTGCAGTATACA 59.834 50.000 5.50 9.29 36.42 2.29
571 1237 2.167281 AGCTGTGGAGTGCAGTATACAG 59.833 50.000 23.53 23.53 38.74 2.74
573 1239 1.831106 TGTGGAGTGCAGTATACAGGG 59.169 52.381 5.50 0.00 0.00 4.45
574 1240 0.830648 TGGAGTGCAGTATACAGGGC 59.169 55.000 5.50 6.46 0.00 5.19
575 1241 0.830648 GGAGTGCAGTATACAGGGCA 59.169 55.000 5.50 9.02 0.00 5.36
656 1345 8.760980 ACCACTCTATATATATCTTCTCCTGC 57.239 38.462 0.00 0.00 0.00 4.85
657 1346 7.782644 ACCACTCTATATATATCTTCTCCTGCC 59.217 40.741 0.00 0.00 0.00 4.85
658 1347 7.782168 CCACTCTATATATATCTTCTCCTGCCA 59.218 40.741 0.00 0.00 0.00 4.92
659 1348 9.194972 CACTCTATATATATCTTCTCCTGCCAA 57.805 37.037 0.00 0.00 0.00 4.52
702 1391 1.306568 AACCTGCCTCCCTCTCTCC 60.307 63.158 0.00 0.00 0.00 3.71
716 1405 2.370189 CTCTCTCCCTCTCTCTCTCTCC 59.630 59.091 0.00 0.00 0.00 3.71
730 1419 2.995258 CTCTCTCCGGTAGCTCGTATAC 59.005 54.545 0.00 0.00 0.00 1.47
743 1432 3.246226 GCTCGTATACCATTGTGCTTCTG 59.754 47.826 0.00 0.00 0.00 3.02
870 1559 2.813754 ACACATTTACGCTGATGCTTGT 59.186 40.909 0.00 0.00 36.97 3.16
903 1595 7.981789 TCATGTACTAATCAGTTCAGTTCATCC 59.018 37.037 0.00 0.00 35.78 3.51
904 1596 7.482169 TGTACTAATCAGTTCAGTTCATCCT 57.518 36.000 0.00 0.00 36.14 3.24
906 1598 6.611613 ACTAATCAGTTCAGTTCATCCTCA 57.388 37.500 0.00 0.00 0.00 3.86
907 1599 7.192852 ACTAATCAGTTCAGTTCATCCTCAT 57.807 36.000 0.00 0.00 0.00 2.90
908 1600 7.046652 ACTAATCAGTTCAGTTCATCCTCATG 58.953 38.462 0.00 0.00 0.00 3.07
910 1602 3.008266 TCAGTTCAGTTCATCCTCATGCA 59.992 43.478 0.00 0.00 0.00 3.96
911 1603 3.126514 CAGTTCAGTTCATCCTCATGCAC 59.873 47.826 0.00 0.00 0.00 4.57
912 1604 3.008813 AGTTCAGTTCATCCTCATGCACT 59.991 43.478 0.00 0.00 37.00 4.40
913 1605 4.223700 AGTTCAGTTCATCCTCATGCACTA 59.776 41.667 0.00 0.00 34.60 2.74
914 1606 4.824479 TCAGTTCATCCTCATGCACTAA 57.176 40.909 0.00 0.00 34.60 2.24
915 1607 5.363562 TCAGTTCATCCTCATGCACTAAT 57.636 39.130 0.00 0.00 34.60 1.73
916 1608 5.363101 TCAGTTCATCCTCATGCACTAATC 58.637 41.667 0.00 0.00 34.60 1.75
917 1609 5.104817 TCAGTTCATCCTCATGCACTAATCA 60.105 40.000 0.00 0.00 34.60 2.57
918 1610 5.236695 CAGTTCATCCTCATGCACTAATCAG 59.763 44.000 0.00 0.00 34.60 2.90
919 1611 5.104610 AGTTCATCCTCATGCACTAATCAGT 60.105 40.000 0.00 0.00 35.03 3.41
922 1614 4.824479 TCCTCATGCACTAATCAGTTCA 57.176 40.909 0.00 0.00 32.32 3.18
923 1615 4.763073 TCCTCATGCACTAATCAGTTCAG 58.237 43.478 0.00 0.00 31.25 3.02
927 1619 6.595326 CCTCATGCACTAATCAGTTCAGTTTA 59.405 38.462 0.00 0.00 31.25 2.01
965 1696 8.946085 TGTTTTCTTGATAAGCTAATGAACGAT 58.054 29.630 0.00 0.00 0.00 3.73
975 1709 1.453155 AATGAACGATGGTCAGTGGC 58.547 50.000 0.00 0.00 0.00 5.01
1093 1837 3.260483 CGCTGATGCTGCTCCGTC 61.260 66.667 0.00 0.00 36.97 4.79
1368 2112 4.149970 GACGACGACGAGAGCGCT 62.150 66.667 11.27 11.27 42.48 5.92
1466 2210 2.507944 CGGGATCCAAGCCAGGAG 59.492 66.667 15.23 0.00 41.90 3.69
1522 2266 2.650116 GGCCTTCTCAGCGAGGTCA 61.650 63.158 0.00 0.00 0.00 4.02
1543 2287 1.949525 GTCCGCACTATTCCATTGCAT 59.050 47.619 0.00 0.00 35.93 3.96
1544 2288 2.358898 GTCCGCACTATTCCATTGCATT 59.641 45.455 0.00 0.00 35.93 3.56
1547 2291 4.455533 TCCGCACTATTCCATTGCATTATC 59.544 41.667 0.00 0.00 35.93 1.75
1549 2293 5.388111 CGCACTATTCCATTGCATTATCAG 58.612 41.667 0.00 0.00 35.93 2.90
1551 2295 5.048224 GCACTATTCCATTGCATTATCAGCT 60.048 40.000 0.00 0.00 36.22 4.24
1552 2296 6.149973 GCACTATTCCATTGCATTATCAGCTA 59.850 38.462 0.00 0.00 36.22 3.32
1553 2297 7.625817 GCACTATTCCATTGCATTATCAGCTAG 60.626 40.741 0.00 0.00 36.22 3.42
1554 2298 7.389884 CACTATTCCATTGCATTATCAGCTAGT 59.610 37.037 0.00 0.00 0.00 2.57
1555 2299 6.570672 ATTCCATTGCATTATCAGCTAGTG 57.429 37.500 0.00 0.00 0.00 2.74
1556 2300 5.294734 TCCATTGCATTATCAGCTAGTGA 57.705 39.130 0.00 0.00 40.38 3.41
1558 2302 7.008021 TCCATTGCATTATCAGCTAGTGATA 57.992 36.000 9.58 9.58 44.69 2.15
1559 2303 7.627311 TCCATTGCATTATCAGCTAGTGATAT 58.373 34.615 12.73 4.79 45.74 1.63
1565 2324 9.813446 TGCATTATCAGCTAGTGATATAATCTG 57.187 33.333 12.73 0.56 45.74 2.90
1588 2347 1.214673 TCTTCTTCCCTCGGCTAGCTA 59.785 52.381 15.72 2.23 0.00 3.32
1590 2349 1.400737 TCTTCCCTCGGCTAGCTAAC 58.599 55.000 15.72 0.00 0.00 2.34
1591 2350 0.389757 CTTCCCTCGGCTAGCTAACC 59.610 60.000 15.72 2.83 0.00 2.85
1592 2351 1.047034 TTCCCTCGGCTAGCTAACCC 61.047 60.000 15.72 4.00 0.00 4.11
1593 2352 2.508751 CCCTCGGCTAGCTAACCCC 61.509 68.421 15.72 1.55 0.00 4.95
1594 2353 1.760875 CCTCGGCTAGCTAACCCCA 60.761 63.158 15.72 0.00 0.00 4.96
1595 2354 1.122019 CCTCGGCTAGCTAACCCCAT 61.122 60.000 15.72 0.00 0.00 4.00
1596 2355 0.034059 CTCGGCTAGCTAACCCCATG 59.966 60.000 15.72 0.00 0.00 3.66
1597 2356 1.071471 CGGCTAGCTAACCCCATGG 59.929 63.158 15.72 4.14 37.80 3.66
1615 2374 3.642755 CCATGGCGGCTAATCGAC 58.357 61.111 11.43 0.00 38.91 4.20
1862 2625 2.043450 ACAGCGAGGAGGAGGAGG 60.043 66.667 0.00 0.00 0.00 4.30
1863 2626 2.277072 CAGCGAGGAGGAGGAGGA 59.723 66.667 0.00 0.00 0.00 3.71
1864 2627 1.827789 CAGCGAGGAGGAGGAGGAG 60.828 68.421 0.00 0.00 0.00 3.69
1865 2628 2.520741 GCGAGGAGGAGGAGGAGG 60.521 72.222 0.00 0.00 0.00 4.30
1866 2629 3.063197 GCGAGGAGGAGGAGGAGGA 62.063 68.421 0.00 0.00 0.00 3.71
1867 2630 1.152839 CGAGGAGGAGGAGGAGGAC 60.153 68.421 0.00 0.00 0.00 3.85
1868 2631 1.152839 GAGGAGGAGGAGGAGGACG 60.153 68.421 0.00 0.00 0.00 4.79
1869 2632 1.619975 AGGAGGAGGAGGAGGACGA 60.620 63.158 0.00 0.00 0.00 4.20
1870 2633 1.215679 AGGAGGAGGAGGAGGACGAA 61.216 60.000 0.00 0.00 0.00 3.85
1916 2688 4.436998 CGGAGGACGTGGTGAGCC 62.437 72.222 0.00 0.00 37.93 4.70
2057 2829 1.043116 CCTAGATCCGTGAGTGCCCA 61.043 60.000 0.00 0.00 0.00 5.36
2059 2831 1.327690 TAGATCCGTGAGTGCCCACC 61.328 60.000 0.00 0.00 33.67 4.61
2063 2840 2.579201 CGTGAGTGCCCACCCTAG 59.421 66.667 0.00 0.00 33.67 3.02
2071 2848 1.147153 GCCCACCCTAGCTGCTTAG 59.853 63.158 7.79 3.36 0.00 2.18
2076 2853 1.757118 CACCCTAGCTGCTTAGCACTA 59.243 52.381 7.79 9.26 37.25 2.74
2096 2873 1.531423 ACAAAGCTCTGTCTGCCATG 58.469 50.000 0.00 0.00 0.00 3.66
2098 2875 0.251033 AAAGCTCTGTCTGCCATGCA 60.251 50.000 0.00 0.00 36.92 3.96
2099 2876 0.034380 AAGCTCTGTCTGCCATGCAT 60.034 50.000 0.00 0.00 38.13 3.96
2100 2877 0.464013 AGCTCTGTCTGCCATGCATC 60.464 55.000 0.00 0.00 38.13 3.91
2102 2879 0.818445 CTCTGTCTGCCATGCATCCC 60.818 60.000 0.00 0.00 38.13 3.85
2103 2880 2.124612 TGTCTGCCATGCATCCCG 60.125 61.111 0.00 0.00 38.13 5.14
2105 2882 2.182842 GTCTGCCATGCATCCCGAC 61.183 63.158 0.00 0.00 38.13 4.79
2107 2884 1.527611 CTGCCATGCATCCCGACAT 60.528 57.895 0.00 0.00 38.13 3.06
2109 2886 0.250424 TGCCATGCATCCCGACATAG 60.250 55.000 0.00 0.00 31.71 2.23
2110 2887 0.250467 GCCATGCATCCCGACATAGT 60.250 55.000 0.00 0.00 0.00 2.12
2111 2888 1.001974 GCCATGCATCCCGACATAGTA 59.998 52.381 0.00 0.00 0.00 1.82
2112 2889 2.355108 GCCATGCATCCCGACATAGTAT 60.355 50.000 0.00 0.00 0.00 2.12
2113 2890 3.118775 GCCATGCATCCCGACATAGTATA 60.119 47.826 0.00 0.00 0.00 1.47
2114 2891 4.622933 GCCATGCATCCCGACATAGTATAA 60.623 45.833 0.00 0.00 0.00 0.98
2115 2892 4.870426 CCATGCATCCCGACATAGTATAAC 59.130 45.833 0.00 0.00 0.00 1.89
2116 2893 4.530710 TGCATCCCGACATAGTATAACC 57.469 45.455 0.00 0.00 0.00 2.85
2117 2894 4.157246 TGCATCCCGACATAGTATAACCT 58.843 43.478 0.00 0.00 0.00 3.50
2118 2895 5.326900 TGCATCCCGACATAGTATAACCTA 58.673 41.667 0.00 0.00 0.00 3.08
2119 2896 5.955959 TGCATCCCGACATAGTATAACCTAT 59.044 40.000 0.00 0.00 0.00 2.57
2120 2897 7.120716 TGCATCCCGACATAGTATAACCTATA 58.879 38.462 0.00 0.00 0.00 1.31
2121 2898 7.616542 TGCATCCCGACATAGTATAACCTATAA 59.383 37.037 0.00 0.00 0.00 0.98
2122 2899 8.472413 GCATCCCGACATAGTATAACCTATAAA 58.528 37.037 0.00 0.00 0.00 1.40
2123 2900 9.798994 CATCCCGACATAGTATAACCTATAAAC 57.201 37.037 0.00 0.00 0.00 2.01
2124 2901 9.765295 ATCCCGACATAGTATAACCTATAAACT 57.235 33.333 0.00 0.00 0.00 2.66
2125 2902 9.592196 TCCCGACATAGTATAACCTATAAACTT 57.408 33.333 0.00 0.00 0.00 2.66
2136 2913 5.161943 ACCTATAAACTTTTGACGCTCCT 57.838 39.130 0.00 0.00 0.00 3.69
2140 2917 2.341846 AACTTTTGACGCTCCTTCCA 57.658 45.000 0.00 0.00 0.00 3.53
2142 2919 2.863809 ACTTTTGACGCTCCTTCCATT 58.136 42.857 0.00 0.00 0.00 3.16
2144 2921 3.253432 ACTTTTGACGCTCCTTCCATTTC 59.747 43.478 0.00 0.00 0.00 2.17
2151 2928 5.475220 TGACGCTCCTTCCATTTCAAAATAA 59.525 36.000 0.00 0.00 0.00 1.40
2152 2929 6.152661 TGACGCTCCTTCCATTTCAAAATAAT 59.847 34.615 0.00 0.00 0.00 1.28
2153 2930 6.935167 ACGCTCCTTCCATTTCAAAATAATT 58.065 32.000 0.00 0.00 0.00 1.40
2154 2931 8.062065 ACGCTCCTTCCATTTCAAAATAATTA 57.938 30.769 0.00 0.00 0.00 1.40
2155 2932 8.527810 ACGCTCCTTCCATTTCAAAATAATTAA 58.472 29.630 0.00 0.00 0.00 1.40
2156 2933 9.364989 CGCTCCTTCCATTTCAAAATAATTAAA 57.635 29.630 0.00 0.00 0.00 1.52
2180 3074 9.946165 AAAGTTTTAGATTTGTCCTTCGTTAAG 57.054 29.630 0.00 0.00 0.00 1.85
2183 3077 9.726232 GTTTTAGATTTGTCCTTCGTTAAGTTT 57.274 29.630 0.00 0.00 0.00 2.66
2190 3084 3.427863 GTCCTTCGTTAAGTTTGACCGAG 59.572 47.826 0.00 0.00 0.00 4.63
2191 3085 3.068590 TCCTTCGTTAAGTTTGACCGAGT 59.931 43.478 0.00 0.00 0.00 4.18
2192 3086 3.805971 CCTTCGTTAAGTTTGACCGAGTT 59.194 43.478 0.00 0.00 0.00 3.01
2197 3091 7.566858 TCGTTAAGTTTGACCGAGTTTATAC 57.433 36.000 0.00 0.00 0.00 1.47
2198 3092 7.144661 TCGTTAAGTTTGACCGAGTTTATACA 58.855 34.615 0.00 0.00 0.00 2.29
2281 3195 9.102757 CTGTATGTGTAGATCTTAGCACATTTT 57.897 33.333 28.63 17.41 46.49 1.82
2316 3232 6.762661 ACTTGGTCAAAATTCAAACAGATTGG 59.237 34.615 0.00 0.00 39.62 3.16
2328 3244 7.391148 TCAAACAGATTGGCTTAATTAGGAC 57.609 36.000 0.00 0.00 39.62 3.85
2330 3246 7.450014 TCAAACAGATTGGCTTAATTAGGACAA 59.550 33.333 17.29 17.29 39.62 3.18
2357 3273 7.873505 TCCTAAAATTTGGGTTATTTTGGAACG 59.126 33.333 7.99 0.00 36.26 3.95
2366 3282 5.831525 GGGTTATTTTGGAACGAAGGGATAT 59.168 40.000 0.00 0.00 0.00 1.63
2372 3288 6.995511 TTTGGAACGAAGGGATATTTGTAG 57.004 37.500 0.00 0.00 0.00 2.74
2374 3290 6.494666 TGGAACGAAGGGATATTTGTAGAT 57.505 37.500 0.00 0.00 0.00 1.98
2376 3292 8.202461 TGGAACGAAGGGATATTTGTAGATAT 57.798 34.615 0.00 0.00 0.00 1.63
2377 3293 8.656806 TGGAACGAAGGGATATTTGTAGATATT 58.343 33.333 0.00 0.00 0.00 1.28
2473 3421 1.974680 GTTTCGGAACAGTCGAGTACG 59.025 52.381 0.38 0.00 37.93 3.67
2480 3428 0.236711 ACAGTCGAGTACGGTCGTTG 59.763 55.000 0.16 7.13 40.93 4.10
2485 3433 2.788786 GTCGAGTACGGTCGTTGAAAAA 59.211 45.455 0.16 0.00 40.93 1.94
2486 3434 2.788786 TCGAGTACGGTCGTTGAAAAAC 59.211 45.455 0.16 0.00 40.93 2.43
2487 3435 2.535166 CGAGTACGGTCGTTGAAAAACA 59.465 45.455 0.16 0.00 35.14 2.83
2488 3436 3.182972 CGAGTACGGTCGTTGAAAAACAT 59.817 43.478 0.16 0.00 35.14 2.71
2489 3437 4.318263 CGAGTACGGTCGTTGAAAAACATT 60.318 41.667 0.16 0.00 35.14 2.71
2490 3438 5.488645 AGTACGGTCGTTGAAAAACATTT 57.511 34.783 0.16 0.00 0.00 2.32
2491 3439 6.561902 CGAGTACGGTCGTTGAAAAACATTTA 60.562 38.462 0.16 0.00 35.14 1.40
2492 3440 6.652245 AGTACGGTCGTTGAAAAACATTTAG 58.348 36.000 0.16 0.00 0.00 1.85
2493 3441 5.738118 ACGGTCGTTGAAAAACATTTAGA 57.262 34.783 0.00 0.00 0.00 2.10
2494 3442 6.308371 ACGGTCGTTGAAAAACATTTAGAT 57.692 33.333 0.00 0.00 0.00 1.98
2495 3443 6.731164 ACGGTCGTTGAAAAACATTTAGATT 58.269 32.000 0.00 0.00 0.00 2.40
2496 3444 6.854381 ACGGTCGTTGAAAAACATTTAGATTC 59.146 34.615 0.00 0.00 0.00 2.52
2497 3445 6.853872 CGGTCGTTGAAAAACATTTAGATTCA 59.146 34.615 0.00 0.00 0.00 2.57
2498 3446 7.377397 CGGTCGTTGAAAAACATTTAGATTCAA 59.623 33.333 0.00 0.00 37.59 2.69
2499 3447 9.026074 GGTCGTTGAAAAACATTTAGATTCAAA 57.974 29.630 0.00 0.00 40.48 2.69
2520 3468 5.437289 AAAAAGCATCACTCGAAACATGA 57.563 34.783 0.00 0.00 0.00 3.07
2521 3469 5.437289 AAAAGCATCACTCGAAACATGAA 57.563 34.783 0.00 0.00 0.00 2.57
2522 3470 4.675190 AAGCATCACTCGAAACATGAAG 57.325 40.909 0.00 0.00 0.00 3.02
2523 3471 3.930336 AGCATCACTCGAAACATGAAGA 58.070 40.909 0.00 0.00 0.00 2.87
2528 3476 6.849811 GCATCACTCGAAACATGAAGATATTG 59.150 38.462 0.00 0.00 0.00 1.90
2536 3484 9.038803 TCGAAACATGAAGATATTGAGATTCAG 57.961 33.333 0.00 0.00 35.31 3.02
2557 3505 7.525688 TCAGTAATTGAAAGTAGCATTCGAG 57.474 36.000 0.00 0.00 31.34 4.04
2562 3510 6.595772 ATTGAAAGTAGCATTCGAGACATC 57.404 37.500 0.00 0.00 0.00 3.06
2589 3739 0.032678 AGTTGACAGACACTCGGCTG 59.967 55.000 0.00 0.00 38.10 4.85
2631 3799 2.579201 CAGGTACCCCAGCGACAG 59.421 66.667 8.74 0.00 0.00 3.51
2797 3983 4.838152 GCGGCGCCCTCTCAATGA 62.838 66.667 23.58 0.00 0.00 2.57
2798 3984 2.587194 CGGCGCCCTCTCAATGAG 60.587 66.667 23.46 3.38 42.30 2.90
2799 3985 2.899339 GGCGCCCTCTCAATGAGC 60.899 66.667 18.11 0.00 41.35 4.26
2849 4036 3.320626 GCAAGATTCAGTTTTCCTTGGC 58.679 45.455 0.00 0.00 35.90 4.52
2850 4037 3.862264 GCAAGATTCAGTTTTCCTTGGCC 60.862 47.826 0.00 0.00 35.90 5.36
2863 4050 4.770362 TGGCCGGAGATGGGTCGA 62.770 66.667 5.05 0.00 29.54 4.20
2869 4066 0.315568 CGGAGATGGGTCGATCTTCC 59.684 60.000 0.00 0.00 32.57 3.46
2872 4069 1.001158 GAGATGGGTCGATCTTCCGTC 60.001 57.143 0.00 3.65 36.97 4.79
2875 4072 0.245539 TGGGTCGATCTTCCGTCAAC 59.754 55.000 0.00 0.00 0.00 3.18
2879 4076 3.367703 GGGTCGATCTTCCGTCAACTTAA 60.368 47.826 0.00 0.00 0.00 1.85
2884 4081 1.962807 TCTTCCGTCAACTTAACCCGA 59.037 47.619 0.00 0.00 0.00 5.14
2885 4082 2.364970 TCTTCCGTCAACTTAACCCGAA 59.635 45.455 0.00 0.00 0.00 4.30
2892 4089 4.913345 CGTCAACTTAACCCGAATTTTTCC 59.087 41.667 0.00 0.00 0.00 3.13
2977 4177 2.682856 ACTGTTCATCGTGTTGCTGTTT 59.317 40.909 0.00 0.00 0.00 2.83
3021 4226 0.034476 TGCCAGAGCTTGAGTGAGTG 59.966 55.000 0.00 0.00 40.80 3.51
3114 4355 6.549061 CATGTAATGTCACTTGTGATTCCAG 58.451 40.000 6.74 0.00 40.20 3.86
3145 4387 6.889177 TGAGATGAGATGTCTCTAGTTCAACT 59.111 38.462 11.03 0.00 43.25 3.16
3150 4392 6.019779 AGATGTCTCTAGTTCAACTGACAC 57.980 41.667 10.53 6.29 33.41 3.67
3164 4406 0.321564 TGACACCAATGCCTTCCTCG 60.322 55.000 0.00 0.00 0.00 4.63
3214 4457 7.230712 AGCAAACTAAACTGCTAACTGGTTATT 59.769 33.333 0.00 0.00 46.92 1.40
3215 4458 8.508875 GCAAACTAAACTGCTAACTGGTTATTA 58.491 33.333 0.00 0.00 35.62 0.98
3219 4462 9.379791 ACTAAACTGCTAACTGGTTATTATGAC 57.620 33.333 0.00 0.00 0.00 3.06
3299 4580 3.809374 CTACCCCGGGCAGCGATTC 62.809 68.421 17.73 0.00 0.00 2.52
3305 4586 2.268920 GGGCAGCGATTCAGGTCA 59.731 61.111 0.00 0.00 0.00 4.02
3306 4587 1.817099 GGGCAGCGATTCAGGTCAG 60.817 63.158 0.00 0.00 0.00 3.51
3307 4588 1.219124 GGCAGCGATTCAGGTCAGA 59.781 57.895 0.00 0.00 0.00 3.27
3308 4589 0.809241 GGCAGCGATTCAGGTCAGAG 60.809 60.000 0.00 0.00 0.00 3.35
3309 4590 0.809241 GCAGCGATTCAGGTCAGAGG 60.809 60.000 0.00 0.00 0.00 3.69
3310 4591 0.820226 CAGCGATTCAGGTCAGAGGA 59.180 55.000 0.00 0.00 0.00 3.71
3311 4592 1.411977 CAGCGATTCAGGTCAGAGGAT 59.588 52.381 0.00 0.00 0.00 3.24
3312 4593 2.114616 AGCGATTCAGGTCAGAGGATT 58.885 47.619 0.00 0.00 0.00 3.01
3313 4594 2.503356 AGCGATTCAGGTCAGAGGATTT 59.497 45.455 0.00 0.00 0.00 2.17
3314 4595 3.706594 AGCGATTCAGGTCAGAGGATTTA 59.293 43.478 0.00 0.00 0.00 1.40
3315 4596 3.804873 GCGATTCAGGTCAGAGGATTTAC 59.195 47.826 0.00 0.00 0.00 2.01
3316 4597 4.372656 CGATTCAGGTCAGAGGATTTACC 58.627 47.826 0.00 0.00 39.35 2.85
3317 4598 4.141937 CGATTCAGGTCAGAGGATTTACCA 60.142 45.833 0.00 0.00 42.04 3.25
3318 4599 5.453903 CGATTCAGGTCAGAGGATTTACCAT 60.454 44.000 0.00 0.00 42.04 3.55
3319 4600 5.779241 TTCAGGTCAGAGGATTTACCATT 57.221 39.130 0.00 0.00 42.04 3.16
3320 4601 5.359194 TCAGGTCAGAGGATTTACCATTC 57.641 43.478 0.00 0.00 42.04 2.67
3321 4602 4.164221 TCAGGTCAGAGGATTTACCATTCC 59.836 45.833 0.00 0.00 42.04 3.01
3322 4603 3.134804 AGGTCAGAGGATTTACCATTCCG 59.865 47.826 0.00 0.00 42.04 4.30
3323 4604 3.467803 GTCAGAGGATTTACCATTCCGG 58.532 50.000 0.00 0.00 42.04 5.14
3333 4614 3.085208 CCATTCCGGTCAGTCCATG 57.915 57.895 0.00 0.00 35.57 3.66
3365 4673 9.549078 GTTTTCAAAATTGGGGTACAGAAATAA 57.451 29.630 0.00 0.00 0.00 1.40
3369 4677 4.601406 ATTGGGGTACAGAAATAAGCCA 57.399 40.909 0.00 0.00 32.32 4.75
3374 4682 4.820173 GGGGTACAGAAATAAGCCACATAC 59.180 45.833 0.00 0.00 32.32 2.39
3375 4683 5.433526 GGGTACAGAAATAAGCCACATACA 58.566 41.667 0.00 0.00 0.00 2.29
3376 4684 6.062095 GGGTACAGAAATAAGCCACATACAT 58.938 40.000 0.00 0.00 0.00 2.29
3377 4685 6.017109 GGGTACAGAAATAAGCCACATACATG 60.017 42.308 0.00 0.00 0.00 3.21
3378 4686 6.765989 GGTACAGAAATAAGCCACATACATGA 59.234 38.462 0.00 0.00 0.00 3.07
3380 4688 6.418101 ACAGAAATAAGCCACATACATGACT 58.582 36.000 0.00 0.00 0.00 3.41
3381 4689 6.540189 ACAGAAATAAGCCACATACATGACTC 59.460 38.462 0.00 0.00 0.00 3.36
3382 4690 6.765036 CAGAAATAAGCCACATACATGACTCT 59.235 38.462 0.00 0.00 0.00 3.24
3383 4691 6.989169 AGAAATAAGCCACATACATGACTCTC 59.011 38.462 0.00 0.00 0.00 3.20
3384 4692 6.491714 AATAAGCCACATACATGACTCTCT 57.508 37.500 0.00 0.00 0.00 3.10
3385 4693 4.833478 AAGCCACATACATGACTCTCTT 57.167 40.909 0.00 0.00 0.00 2.85
3386 4694 4.833478 AGCCACATACATGACTCTCTTT 57.167 40.909 0.00 0.00 0.00 2.52
3387 4695 5.171339 AGCCACATACATGACTCTCTTTT 57.829 39.130 0.00 0.00 0.00 2.27
3388 4696 5.181748 AGCCACATACATGACTCTCTTTTC 58.818 41.667 0.00 0.00 0.00 2.29
3392 4700 7.522073 GCCACATACATGACTCTCTTTTCAAAA 60.522 37.037 0.00 0.00 0.00 2.44
3393 4701 8.517878 CCACATACATGACTCTCTTTTCAAAAT 58.482 33.333 0.00 0.00 0.00 1.82
3394 4702 9.903682 CACATACATGACTCTCTTTTCAAAATT 57.096 29.630 0.00 0.00 0.00 1.82
3395 4703 9.903682 ACATACATGACTCTCTTTTCAAAATTG 57.096 29.630 0.00 0.00 0.00 2.32
3396 4704 9.350357 CATACATGACTCTCTTTTCAAAATTGG 57.650 33.333 0.00 0.00 0.00 3.16
3397 4705 6.752168 ACATGACTCTCTTTTCAAAATTGGG 58.248 36.000 0.00 0.00 0.00 4.12
3398 4706 5.789643 TGACTCTCTTTTCAAAATTGGGG 57.210 39.130 0.00 0.00 0.00 4.96
3399 4707 5.208121 TGACTCTCTTTTCAAAATTGGGGT 58.792 37.500 0.00 0.00 0.00 4.95
3400 4708 6.369629 TGACTCTCTTTTCAAAATTGGGGTA 58.630 36.000 0.00 0.00 0.00 3.69
3401 4709 6.264518 TGACTCTCTTTTCAAAATTGGGGTAC 59.735 38.462 0.00 0.00 0.00 3.34
3402 4710 6.133356 ACTCTCTTTTCAAAATTGGGGTACA 58.867 36.000 0.00 0.00 0.00 2.90
3403 4711 6.265422 ACTCTCTTTTCAAAATTGGGGTACAG 59.735 38.462 0.00 0.00 0.00 2.74
3404 4712 6.369629 TCTCTTTTCAAAATTGGGGTACAGA 58.630 36.000 0.00 0.00 0.00 3.41
3407 4715 8.028652 TCTTTTCAAAATTGGGGTACAGAAAT 57.971 30.769 0.00 0.00 0.00 2.17
3409 4717 9.771534 CTTTTCAAAATTGGGGTACAGAAATAA 57.228 29.630 0.00 0.00 0.00 1.40
3410 4718 9.771534 TTTTCAAAATTGGGGTACAGAAATAAG 57.228 29.630 0.00 0.00 0.00 1.73
3411 4719 6.930731 TCAAAATTGGGGTACAGAAATAAGC 58.069 36.000 0.00 0.00 0.00 3.09
3412 4720 5.932619 AAATTGGGGTACAGAAATAAGCC 57.067 39.130 0.00 0.00 0.00 4.35
3414 4722 3.359695 TGGGGTACAGAAATAAGCCAC 57.640 47.619 0.00 0.00 32.32 5.01
3415 4723 2.645297 TGGGGTACAGAAATAAGCCACA 59.355 45.455 0.00 0.00 32.32 4.17
3416 4724 3.268334 TGGGGTACAGAAATAAGCCACAT 59.732 43.478 0.00 0.00 32.32 3.21
3417 4725 4.475381 TGGGGTACAGAAATAAGCCACATA 59.525 41.667 0.00 0.00 32.32 2.29
3424 4732 5.192927 CAGAAATAAGCCACATAAGGGTGA 58.807 41.667 0.00 0.00 41.32 4.02
3430 4738 0.537188 CCACATAAGGGTGAGCGAGT 59.463 55.000 0.00 0.00 41.32 4.18
3451 4759 0.390860 CATCTTCGCCTACAGGAGGG 59.609 60.000 0.00 0.00 46.81 4.30
3582 4901 3.245284 CACGACAGAAGGTACACAAACTG 59.755 47.826 0.00 0.00 0.00 3.16
3602 4921 0.396695 AAGGAGCAATGCCCATCCAG 60.397 55.000 13.41 0.00 34.08 3.86
3603 4922 1.228228 GGAGCAATGCCCATCCAGA 59.772 57.895 0.00 0.00 0.00 3.86
3604 4923 0.178970 GGAGCAATGCCCATCCAGAT 60.179 55.000 0.00 0.00 0.00 2.90
3682 5001 4.091549 TCCACTACACCTAGGGTTTACTG 58.908 47.826 14.81 3.30 31.02 2.74
3696 5021 0.461870 TTACTGCGGCATTCTGCGAT 60.462 50.000 1.75 0.00 46.21 4.58
3724 5053 0.108585 TGACAGGCAAACCAGAGTCC 59.891 55.000 0.00 0.00 39.06 3.85
3768 5097 4.755123 ACGGTACCAAAAAGAAGATGAGTG 59.245 41.667 13.54 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 2.927580 AATGCTGTGCTGTGCTGCC 61.928 57.895 0.00 0.00 0.00 4.85
112 113 2.732619 GGTCCGGCCTTGGTAGAGG 61.733 68.421 0.00 0.00 39.93 3.69
131 147 3.468140 GTCGTGGTAGGGGCCCTC 61.468 72.222 32.78 20.42 34.61 4.30
134 150 3.087906 ATGGTCGTGGTAGGGGCC 61.088 66.667 0.00 0.00 0.00 5.80
135 151 2.189521 CATGGTCGTGGTAGGGGC 59.810 66.667 0.00 0.00 0.00 5.80
136 152 1.220749 CACATGGTCGTGGTAGGGG 59.779 63.158 0.00 0.00 33.05 4.79
137 153 0.391130 CACACATGGTCGTGGTAGGG 60.391 60.000 0.00 0.00 41.38 3.53
138 154 0.320374 ACACACATGGTCGTGGTAGG 59.680 55.000 14.32 0.00 41.38 3.18
139 155 1.270094 ACACACACATGGTCGTGGTAG 60.270 52.381 14.32 7.94 41.38 3.18
140 156 0.753867 ACACACACATGGTCGTGGTA 59.246 50.000 14.32 0.00 41.38 3.25
141 157 0.813610 CACACACACATGGTCGTGGT 60.814 55.000 14.32 8.12 41.38 4.16
142 158 0.813610 ACACACACACATGGTCGTGG 60.814 55.000 14.32 7.65 41.38 4.94
143 159 0.304401 CACACACACACATGGTCGTG 59.696 55.000 9.78 9.78 42.81 4.35
144 160 0.107897 ACACACACACACATGGTCGT 60.108 50.000 0.00 0.00 0.00 4.34
145 161 0.304401 CACACACACACACATGGTCG 59.696 55.000 0.00 0.00 0.00 4.79
146 162 1.063912 CACACACACACACACATGGTC 59.936 52.381 0.00 0.00 0.00 4.02
167 183 3.618750 TTGGCCTGGCTGCAAAGC 61.619 61.111 19.68 0.00 0.00 3.51
203 435 1.597742 ATGCGAGCTCTCTCTCTCTC 58.402 55.000 12.85 0.00 37.19 3.20
209 441 3.057666 TCATGTCATATGCGAGCTCTCTC 60.058 47.826 12.85 1.33 35.99 3.20
214 446 1.607509 GCCTCATGTCATATGCGAGCT 60.608 52.381 0.00 0.00 0.00 4.09
215 447 0.795085 GCCTCATGTCATATGCGAGC 59.205 55.000 0.00 0.00 0.00 5.03
219 451 2.511659 ACCATGCCTCATGTCATATGC 58.488 47.619 0.00 0.00 39.94 3.14
220 452 4.499037 CAACCATGCCTCATGTCATATG 57.501 45.455 0.00 0.00 39.94 1.78
234 466 0.251297 TCTTGGGGAGTGCAACCATG 60.251 55.000 12.29 9.55 37.80 3.66
235 467 0.482446 TTCTTGGGGAGTGCAACCAT 59.518 50.000 12.29 0.00 37.80 3.55
236 468 0.260230 TTTCTTGGGGAGTGCAACCA 59.740 50.000 12.29 5.25 37.80 3.67
281 513 1.443828 GCCTCTGCTACTACTGGCC 59.556 63.158 0.00 0.00 34.81 5.36
305 537 2.228059 TCTATCTAGTACCGCCACAGC 58.772 52.381 0.00 0.00 0.00 4.40
312 544 8.965819 TCTACTACTGGTATCTATCTAGTACCG 58.034 40.741 2.93 1.44 40.57 4.02
317 549 9.607988 CCATGTCTACTACTGGTATCTATCTAG 57.392 40.741 0.00 0.00 0.00 2.43
318 550 9.335211 TCCATGTCTACTACTGGTATCTATCTA 57.665 37.037 0.00 0.00 31.81 1.98
320 552 7.554835 CCTCCATGTCTACTACTGGTATCTATC 59.445 44.444 0.00 0.00 31.81 2.08
321 553 7.406916 CCTCCATGTCTACTACTGGTATCTAT 58.593 42.308 0.00 0.00 31.81 1.98
399 1033 2.878406 GCTCTGTCTTTTGGCACTGTAA 59.122 45.455 0.00 0.00 0.00 2.41
413 1047 1.874562 CAAGCCAGCAAGCTCTGTC 59.125 57.895 0.51 0.00 44.11 3.51
426 1060 2.256461 CTTCGGTGCAAGCAAGCC 59.744 61.111 0.00 0.00 0.00 4.35
440 1074 1.269257 GGCTTTTGGCACTGTGACTTC 60.269 52.381 15.76 0.00 45.26 3.01
475 1109 0.250381 AAACGACGGCACCAACCATA 60.250 50.000 0.00 0.00 0.00 2.74
506 1149 0.606401 AGCCTCCGTTGGACAATGTG 60.606 55.000 0.00 0.00 0.00 3.21
563 1229 4.342378 CAGTGTGTATCTGCCCTGTATACT 59.658 45.833 4.17 0.00 0.00 2.12
574 1240 2.377004 CGCAGGCAGTGTGTATCTG 58.623 57.895 0.00 0.00 36.18 2.90
575 1241 4.919653 CGCAGGCAGTGTGTATCT 57.080 55.556 0.00 0.00 31.43 1.98
655 1344 4.383861 GGCTTGGCTTGGCTTGGC 62.384 66.667 0.00 0.00 0.00 4.52
656 1345 2.444700 CTTGGCTTGGCTTGGCTTGG 62.445 60.000 5.64 0.00 0.00 3.61
657 1346 1.005394 CTTGGCTTGGCTTGGCTTG 60.005 57.895 5.64 0.00 0.00 4.01
658 1347 2.875804 GCTTGGCTTGGCTTGGCTT 61.876 57.895 5.64 0.00 0.00 4.35
659 1348 3.308705 GCTTGGCTTGGCTTGGCT 61.309 61.111 5.64 0.00 0.00 4.75
702 1391 1.542547 GCTACCGGAGAGAGAGAGAGG 60.543 61.905 9.46 0.00 0.00 3.69
716 1405 3.305964 CACAATGGTATACGAGCTACCG 58.694 50.000 0.00 0.00 41.35 4.02
775 1464 2.517998 AGAGAGGTGAGTGGTAGACC 57.482 55.000 0.00 0.00 0.00 3.85
840 1529 2.097954 AGCGTAAATGTGTCCATGCATG 59.902 45.455 20.19 20.19 0.00 4.06
841 1530 2.097954 CAGCGTAAATGTGTCCATGCAT 59.902 45.455 0.00 0.00 0.00 3.96
843 1532 1.737236 TCAGCGTAAATGTGTCCATGC 59.263 47.619 0.00 0.00 0.00 4.06
846 1535 1.737236 GCATCAGCGTAAATGTGTCCA 59.263 47.619 0.00 0.00 0.00 4.02
870 1559 9.538508 CTGAACTGATTAGTACATGATGATGAA 57.461 33.333 0.00 0.00 35.69 2.57
877 1566 7.981789 GGATGAACTGAACTGATTAGTACATGA 59.018 37.037 0.00 0.00 35.69 3.07
878 1567 7.984050 AGGATGAACTGAACTGATTAGTACATG 59.016 37.037 0.00 0.00 35.69 3.21
879 1568 8.083828 AGGATGAACTGAACTGATTAGTACAT 57.916 34.615 0.00 0.00 35.69 2.29
880 1569 7.178451 TGAGGATGAACTGAACTGATTAGTACA 59.822 37.037 0.00 0.00 35.69 2.90
881 1570 7.548097 TGAGGATGAACTGAACTGATTAGTAC 58.452 38.462 0.00 0.00 35.69 2.73
882 1571 7.718334 TGAGGATGAACTGAACTGATTAGTA 57.282 36.000 0.00 0.00 35.69 1.82
903 1595 6.492007 AAACTGAACTGATTAGTGCATGAG 57.508 37.500 0.00 0.00 41.66 2.90
904 1596 6.090763 CGTAAACTGAACTGATTAGTGCATGA 59.909 38.462 0.00 0.00 41.66 3.07
906 1598 6.163476 TCGTAAACTGAACTGATTAGTGCAT 58.837 36.000 0.00 0.00 41.66 3.96
907 1599 5.534407 TCGTAAACTGAACTGATTAGTGCA 58.466 37.500 0.00 0.00 40.26 4.57
908 1600 6.310467 TCATCGTAAACTGAACTGATTAGTGC 59.690 38.462 0.00 0.00 37.19 4.40
910 1602 8.251026 TCATCATCGTAAACTGAACTGATTAGT 58.749 33.333 0.00 0.00 39.32 2.24
911 1603 8.634475 TCATCATCGTAAACTGAACTGATTAG 57.366 34.615 0.00 0.00 0.00 1.73
913 1605 9.770097 ATATCATCATCGTAAACTGAACTGATT 57.230 29.630 0.00 0.00 28.94 2.57
914 1606 9.201127 CATATCATCATCGTAAACTGAACTGAT 57.799 33.333 0.00 0.00 30.35 2.90
915 1607 8.197439 ACATATCATCATCGTAAACTGAACTGA 58.803 33.333 0.00 0.00 0.00 3.41
916 1608 8.357796 ACATATCATCATCGTAAACTGAACTG 57.642 34.615 0.00 0.00 0.00 3.16
917 1609 8.948631 AACATATCATCATCGTAAACTGAACT 57.051 30.769 0.00 0.00 0.00 3.01
918 1610 9.988350 AAAACATATCATCATCGTAAACTGAAC 57.012 29.630 0.00 0.00 0.00 3.18
959 1690 2.100631 CCGCCACTGACCATCGTTC 61.101 63.158 0.00 0.00 0.00 3.95
965 1696 4.248842 CACCACCGCCACTGACCA 62.249 66.667 0.00 0.00 0.00 4.02
975 1709 1.610554 CCTACCTACCACCACCACCG 61.611 65.000 0.00 0.00 0.00 4.94
1347 2091 2.394912 CTCTCGTCGTCGTCGTCC 59.605 66.667 11.41 0.00 38.33 4.79
1349 2093 4.131581 CGCTCTCGTCGTCGTCGT 62.132 66.667 11.41 0.00 38.33 4.34
1522 2266 1.668419 GCAATGGAATAGTGCGGACT 58.332 50.000 15.78 15.78 40.87 3.85
1547 2291 9.013229 AGAAGAGACAGATTATATCACTAGCTG 57.987 37.037 0.00 0.00 0.00 4.24
1549 2293 9.840427 GAAGAAGAGACAGATTATATCACTAGC 57.160 37.037 0.00 0.00 0.00 3.42
1551 2295 9.303116 GGGAAGAAGAGACAGATTATATCACTA 57.697 37.037 0.00 0.00 0.00 2.74
1552 2296 8.010105 AGGGAAGAAGAGACAGATTATATCACT 58.990 37.037 0.00 0.00 0.00 3.41
1553 2297 8.189119 AGGGAAGAAGAGACAGATTATATCAC 57.811 38.462 0.00 0.00 0.00 3.06
1554 2298 7.175816 CGAGGGAAGAAGAGACAGATTATATCA 59.824 40.741 0.00 0.00 0.00 2.15
1555 2299 7.362574 CCGAGGGAAGAAGAGACAGATTATATC 60.363 44.444 0.00 0.00 0.00 1.63
1556 2300 6.435904 CCGAGGGAAGAAGAGACAGATTATAT 59.564 42.308 0.00 0.00 0.00 0.86
1557 2301 5.770663 CCGAGGGAAGAAGAGACAGATTATA 59.229 44.000 0.00 0.00 0.00 0.98
1558 2302 4.586841 CCGAGGGAAGAAGAGACAGATTAT 59.413 45.833 0.00 0.00 0.00 1.28
1559 2303 3.954904 CCGAGGGAAGAAGAGACAGATTA 59.045 47.826 0.00 0.00 0.00 1.75
1562 2321 1.840737 CCGAGGGAAGAAGAGACAGA 58.159 55.000 0.00 0.00 0.00 3.41
1565 2324 1.679153 CTAGCCGAGGGAAGAAGAGAC 59.321 57.143 0.00 0.00 0.00 3.36
1615 2374 2.186384 CCCTCCAGCTGCGAGAAG 59.814 66.667 25.15 15.88 0.00 2.85
1792 2555 3.499737 GCCGGCCTTGTGATGACG 61.500 66.667 18.11 0.00 0.00 4.35
1862 2625 1.225691 CGTCGTCGTCTTCGTCCTC 60.226 63.158 0.00 0.00 38.33 3.71
1863 2626 1.624865 CTCGTCGTCGTCTTCGTCCT 61.625 60.000 1.33 0.00 38.33 3.85
1864 2627 1.225691 CTCGTCGTCGTCTTCGTCC 60.226 63.158 1.33 0.00 38.33 4.79
1865 2628 0.710567 TACTCGTCGTCGTCTTCGTC 59.289 55.000 1.33 0.00 38.33 4.20
1866 2629 0.436531 GTACTCGTCGTCGTCTTCGT 59.563 55.000 1.33 0.00 38.33 3.85
1867 2630 0.580198 CGTACTCGTCGTCGTCTTCG 60.580 60.000 1.33 0.86 38.33 3.79
1868 2631 0.710567 TCGTACTCGTCGTCGTCTTC 59.289 55.000 1.33 0.00 38.33 2.87
1869 2632 0.436531 GTCGTACTCGTCGTCGTCTT 59.563 55.000 1.33 0.00 38.33 3.01
1870 2633 1.347817 GGTCGTACTCGTCGTCGTCT 61.348 60.000 1.33 0.00 38.33 4.18
2063 2840 2.485814 AGCTTTGTTAGTGCTAAGCAGC 59.514 45.455 12.82 0.00 45.11 5.25
2071 2848 2.096019 GCAGACAGAGCTTTGTTAGTGC 60.096 50.000 18.31 18.31 0.00 4.40
2076 2853 1.884579 CATGGCAGACAGAGCTTTGTT 59.115 47.619 11.71 0.00 0.00 2.83
2096 2873 4.803098 AGGTTATACTATGTCGGGATGC 57.197 45.455 0.00 0.00 0.00 3.91
2098 2875 9.765295 AGTTTATAGGTTATACTATGTCGGGAT 57.235 33.333 0.00 0.00 35.41 3.85
2099 2876 9.592196 AAGTTTATAGGTTATACTATGTCGGGA 57.408 33.333 0.00 0.00 35.41 5.14
2109 2886 8.546244 GGAGCGTCAAAAGTTTATAGGTTATAC 58.454 37.037 0.00 0.00 0.00 1.47
2110 2887 8.480501 AGGAGCGTCAAAAGTTTATAGGTTATA 58.519 33.333 0.00 0.00 0.00 0.98
2111 2888 7.336396 AGGAGCGTCAAAAGTTTATAGGTTAT 58.664 34.615 0.00 0.00 0.00 1.89
2112 2889 6.704310 AGGAGCGTCAAAAGTTTATAGGTTA 58.296 36.000 0.00 0.00 0.00 2.85
2113 2890 5.557866 AGGAGCGTCAAAAGTTTATAGGTT 58.442 37.500 0.00 0.00 0.00 3.50
2114 2891 5.161943 AGGAGCGTCAAAAGTTTATAGGT 57.838 39.130 0.00 0.00 0.00 3.08
2115 2892 5.064834 GGAAGGAGCGTCAAAAGTTTATAGG 59.935 44.000 0.00 0.00 0.00 2.57
2116 2893 5.642063 TGGAAGGAGCGTCAAAAGTTTATAG 59.358 40.000 0.00 0.00 0.00 1.31
2117 2894 5.553123 TGGAAGGAGCGTCAAAAGTTTATA 58.447 37.500 0.00 0.00 0.00 0.98
2118 2895 4.394729 TGGAAGGAGCGTCAAAAGTTTAT 58.605 39.130 0.00 0.00 0.00 1.40
2119 2896 3.811083 TGGAAGGAGCGTCAAAAGTTTA 58.189 40.909 0.00 0.00 0.00 2.01
2120 2897 2.650322 TGGAAGGAGCGTCAAAAGTTT 58.350 42.857 0.00 0.00 0.00 2.66
2121 2898 2.341846 TGGAAGGAGCGTCAAAAGTT 57.658 45.000 0.00 0.00 0.00 2.66
2122 2899 2.568623 ATGGAAGGAGCGTCAAAAGT 57.431 45.000 0.00 0.00 0.00 2.66
2123 2900 3.253188 TGAAATGGAAGGAGCGTCAAAAG 59.747 43.478 0.00 0.00 0.00 2.27
2124 2901 3.218453 TGAAATGGAAGGAGCGTCAAAA 58.782 40.909 0.00 0.00 0.00 2.44
2125 2902 2.857483 TGAAATGGAAGGAGCGTCAAA 58.143 42.857 0.00 0.00 0.00 2.69
2126 2903 2.559698 TGAAATGGAAGGAGCGTCAA 57.440 45.000 0.00 0.00 0.00 3.18
2127 2904 2.559698 TTGAAATGGAAGGAGCGTCA 57.440 45.000 0.00 0.00 0.00 4.35
2128 2905 3.915437 TTTTGAAATGGAAGGAGCGTC 57.085 42.857 0.00 0.00 0.00 5.19
2129 2906 5.975693 TTATTTTGAAATGGAAGGAGCGT 57.024 34.783 0.00 0.00 0.00 5.07
2130 2907 8.925161 TTAATTATTTTGAAATGGAAGGAGCG 57.075 30.769 0.00 0.00 0.00 5.03
2154 2931 9.946165 CTTAACGAAGGACAAATCTAAAACTTT 57.054 29.630 0.00 0.00 0.00 2.66
2155 2932 9.117183 ACTTAACGAAGGACAAATCTAAAACTT 57.883 29.630 0.00 0.00 36.95 2.66
2156 2933 8.672823 ACTTAACGAAGGACAAATCTAAAACT 57.327 30.769 0.00 0.00 36.95 2.66
2159 2936 9.111613 TCAAACTTAACGAAGGACAAATCTAAA 57.888 29.630 0.00 0.00 36.95 1.85
2161 2938 7.172019 GGTCAAACTTAACGAAGGACAAATCTA 59.828 37.037 0.00 0.00 36.95 1.98
2164 2941 5.277634 CGGTCAAACTTAACGAAGGACAAAT 60.278 40.000 0.00 0.00 36.95 2.32
2168 2945 3.383761 TCGGTCAAACTTAACGAAGGAC 58.616 45.455 0.00 0.00 36.95 3.85
2170 2947 3.387397 ACTCGGTCAAACTTAACGAAGG 58.613 45.455 0.00 0.00 36.95 3.46
2171 2948 5.399604 AAACTCGGTCAAACTTAACGAAG 57.600 39.130 0.00 0.00 38.76 3.79
2174 2951 7.337150 TGTATAAACTCGGTCAAACTTAACG 57.663 36.000 0.00 0.00 0.00 3.18
2183 3077 9.887629 TGGTATATTTTTGTATAAACTCGGTCA 57.112 29.630 0.00 0.00 0.00 4.02
2281 3195 8.160521 TGAATTTTGACCAAGTCTATTCGAAA 57.839 30.769 0.00 0.00 33.19 3.46
2284 3198 7.860373 TGTTTGAATTTTGACCAAGTCTATTCG 59.140 33.333 0.00 0.00 33.19 3.34
2285 3199 9.185192 CTGTTTGAATTTTGACCAAGTCTATTC 57.815 33.333 0.00 4.30 33.15 1.75
2286 3200 8.912988 TCTGTTTGAATTTTGACCAAGTCTATT 58.087 29.630 0.00 0.00 33.15 1.73
2293 3209 5.526846 GCCAATCTGTTTGAATTTTGACCAA 59.473 36.000 0.12 0.00 37.53 3.67
2325 3241 9.733556 AAAATAACCCAAATTTTAGGATTGTCC 57.266 29.630 10.38 0.00 35.35 4.02
2328 3244 9.732130 TCCAAAATAACCCAAATTTTAGGATTG 57.268 29.630 10.38 7.28 35.35 2.67
2330 3246 9.733556 GTTCCAAAATAACCCAAATTTTAGGAT 57.266 29.630 10.38 2.27 35.35 3.24
2332 3248 7.873505 TCGTTCCAAAATAACCCAAATTTTAGG 59.126 33.333 2.96 2.96 35.35 2.69
2334 3250 9.262358 CTTCGTTCCAAAATAACCCAAATTTTA 57.738 29.630 0.00 0.00 35.35 1.52
2339 3255 4.039366 CCCTTCGTTCCAAAATAACCCAAA 59.961 41.667 0.00 0.00 0.00 3.28
2342 3258 3.423749 TCCCTTCGTTCCAAAATAACCC 58.576 45.455 0.00 0.00 0.00 4.11
2348 3264 7.169591 TCTACAAATATCCCTTCGTTCCAAAA 58.830 34.615 0.00 0.00 0.00 2.44
2378 3294 9.898152 TTGACCAAGGTTATTGAGAAAATTTTT 57.102 25.926 4.63 0.00 0.00 1.94
2383 3299 8.700051 TGAATTTGACCAAGGTTATTGAGAAAA 58.300 29.630 0.00 0.00 0.00 2.29
2384 3300 8.243961 TGAATTTGACCAAGGTTATTGAGAAA 57.756 30.769 0.00 0.00 0.00 2.52
2385 3301 7.831691 TGAATTTGACCAAGGTTATTGAGAA 57.168 32.000 0.00 0.00 0.00 2.87
2386 3302 7.831691 TTGAATTTGACCAAGGTTATTGAGA 57.168 32.000 0.00 0.00 0.00 3.27
2439 3382 6.231951 TGTTCCGAAACATAAGGTGTATTGA 58.768 36.000 0.00 0.00 41.14 2.57
2440 3383 6.148811 ACTGTTCCGAAACATAAGGTGTATTG 59.851 38.462 0.00 0.00 44.18 1.90
2444 3387 4.062991 GACTGTTCCGAAACATAAGGTGT 58.937 43.478 0.00 0.00 44.18 4.16
2453 3396 1.974680 CGTACTCGACTGTTCCGAAAC 59.025 52.381 0.00 0.00 39.71 2.78
2458 3401 0.179205 CGACCGTACTCGACTGTTCC 60.179 60.000 0.00 0.00 39.71 3.62
2465 3408 2.772568 TTTTCAACGACCGTACTCGA 57.227 45.000 11.08 0.00 39.71 4.04
2473 3421 8.568732 TTGAATCTAAATGTTTTTCAACGACC 57.431 30.769 0.00 0.00 35.40 4.79
2498 3446 5.437289 TCATGTTTCGAGTGATGCTTTTT 57.563 34.783 0.00 0.00 0.00 1.94
2499 3447 5.239306 TCTTCATGTTTCGAGTGATGCTTTT 59.761 36.000 0.00 0.00 0.00 2.27
2500 3448 4.756642 TCTTCATGTTTCGAGTGATGCTTT 59.243 37.500 0.00 0.00 0.00 3.51
2501 3449 4.318332 TCTTCATGTTTCGAGTGATGCTT 58.682 39.130 0.00 0.00 0.00 3.91
2502 3450 3.930336 TCTTCATGTTTCGAGTGATGCT 58.070 40.909 0.00 0.00 0.00 3.79
2503 3451 4.871993 ATCTTCATGTTTCGAGTGATGC 57.128 40.909 0.00 0.00 0.00 3.91
2504 3452 8.134905 TCAATATCTTCATGTTTCGAGTGATG 57.865 34.615 0.00 0.00 0.00 3.07
2505 3453 8.200120 TCTCAATATCTTCATGTTTCGAGTGAT 58.800 33.333 0.00 0.00 0.00 3.06
2506 3454 7.547227 TCTCAATATCTTCATGTTTCGAGTGA 58.453 34.615 0.00 0.00 0.00 3.41
2507 3455 7.761651 TCTCAATATCTTCATGTTTCGAGTG 57.238 36.000 0.00 0.00 0.00 3.51
2508 3456 8.954950 AATCTCAATATCTTCATGTTTCGAGT 57.045 30.769 0.00 0.00 0.00 4.18
2509 3457 9.038803 TGAATCTCAATATCTTCATGTTTCGAG 57.961 33.333 0.00 0.00 0.00 4.04
2510 3458 8.947055 TGAATCTCAATATCTTCATGTTTCGA 57.053 30.769 0.00 0.00 0.00 3.71
2511 3459 8.824781 ACTGAATCTCAATATCTTCATGTTTCG 58.175 33.333 0.00 0.00 0.00 3.46
2528 3476 9.928236 GAATGCTACTTTCAATTACTGAATCTC 57.072 33.333 0.00 0.00 43.64 2.75
2536 3484 7.290857 TGTCTCGAATGCTACTTTCAATTAC 57.709 36.000 0.00 0.00 0.00 1.89
2539 3487 5.525378 GGATGTCTCGAATGCTACTTTCAAT 59.475 40.000 0.00 0.00 0.00 2.57
2557 3505 4.390297 GTCTGTCAACTAGCTTTGGATGTC 59.610 45.833 0.00 0.00 0.00 3.06
2562 3510 3.733337 AGTGTCTGTCAACTAGCTTTGG 58.267 45.455 0.00 0.00 0.00 3.28
2589 3739 0.639756 CGTTGCAGCAAAACACACAC 59.360 50.000 10.11 0.00 0.00 3.82
2590 3740 0.242286 ACGTTGCAGCAAAACACACA 59.758 45.000 10.11 0.00 0.00 3.72
2667 3835 4.163078 ACCAGTTGGATATCTGTCTTCTGG 59.837 45.833 18.40 18.40 43.51 3.86
2786 3972 0.540454 TGCTCAGCTCATTGAGAGGG 59.460 55.000 17.87 9.61 45.95 4.30
2798 3984 1.376553 GGAAGGAGGTGTGCTCAGC 60.377 63.158 9.87 9.87 41.73 4.26
2799 3985 0.689623 AAGGAAGGAGGTGTGCTCAG 59.310 55.000 0.00 0.00 0.00 3.35
2849 4036 0.315568 GAAGATCGACCCATCTCCGG 59.684 60.000 0.00 0.00 31.44 5.14
2850 4037 0.315568 GGAAGATCGACCCATCTCCG 59.684 60.000 0.00 0.00 31.44 4.63
2863 4050 2.564062 TCGGGTTAAGTTGACGGAAGAT 59.436 45.455 0.00 0.00 0.00 2.40
2869 4066 4.913345 GGAAAAATTCGGGTTAAGTTGACG 59.087 41.667 0.00 0.00 0.00 4.35
2872 4069 7.780008 AAAAGGAAAAATTCGGGTTAAGTTG 57.220 32.000 0.00 0.00 0.00 3.16
2875 4072 8.495148 CATCAAAAAGGAAAAATTCGGGTTAAG 58.505 33.333 0.00 0.00 0.00 1.85
2879 4076 5.757808 CACATCAAAAAGGAAAAATTCGGGT 59.242 36.000 0.00 0.00 0.00 5.28
2892 4089 6.672147 ACCGAAGAAAGATCACATCAAAAAG 58.328 36.000 0.00 0.00 0.00 2.27
2977 4177 3.507411 AGAGCTTCACTACCCAACTACA 58.493 45.455 0.00 0.00 0.00 2.74
3077 4318 4.632153 ACATTACATGCCGTAGAATCTCC 58.368 43.478 0.00 0.00 0.00 3.71
3078 4319 5.175856 GTGACATTACATGCCGTAGAATCTC 59.824 44.000 0.00 0.00 0.00 2.75
3109 4350 4.259356 CATCTCATCTCAAACAGCTGGAA 58.741 43.478 19.93 0.00 0.00 3.53
3112 4353 4.505808 AGACATCTCATCTCAAACAGCTG 58.494 43.478 13.48 13.48 0.00 4.24
3114 4355 4.757594 AGAGACATCTCATCTCAAACAGC 58.242 43.478 11.39 0.00 44.34 4.40
3145 4387 0.321564 CGAGGAAGGCATTGGTGTCA 60.322 55.000 0.00 0.00 30.45 3.58
3150 4392 1.533625 TTGTTCGAGGAAGGCATTGG 58.466 50.000 0.00 0.00 0.00 3.16
3214 4457 9.851686 ACATGATTAAGCTGAATTTAGGTCATA 57.148 29.630 0.00 0.00 0.00 2.15
3215 4458 8.757982 ACATGATTAAGCTGAATTTAGGTCAT 57.242 30.769 0.00 0.00 0.00 3.06
3216 4459 9.851686 ATACATGATTAAGCTGAATTTAGGTCA 57.148 29.630 0.00 0.00 0.00 4.02
3233 4495 7.454380 TCCCCAGTTTCAAAAAGATACATGATT 59.546 33.333 0.00 0.00 31.46 2.57
3243 4505 3.295973 TCCTGTCCCCAGTTTCAAAAAG 58.704 45.455 0.00 0.00 36.95 2.27
3299 4580 4.455606 GGAATGGTAAATCCTCTGACCTG 58.544 47.826 0.00 0.00 37.07 4.00
3315 4596 0.541392 TCATGGACTGACCGGAATGG 59.459 55.000 9.46 0.00 46.41 3.16
3324 4605 4.687901 TGAAAACAGAGTCATGGACTGA 57.312 40.909 16.87 0.00 43.53 3.41
3325 4606 5.756195 TTTGAAAACAGAGTCATGGACTG 57.244 39.130 3.21 11.16 43.53 3.51
3326 4607 6.966534 ATTTTGAAAACAGAGTCATGGACT 57.033 33.333 0.00 0.00 46.42 3.85
3327 4608 6.421801 CCAATTTTGAAAACAGAGTCATGGAC 59.578 38.462 0.00 0.00 0.00 4.02
3328 4609 6.462768 CCCAATTTTGAAAACAGAGTCATGGA 60.463 38.462 0.00 0.00 0.00 3.41
3329 4610 5.697633 CCCAATTTTGAAAACAGAGTCATGG 59.302 40.000 0.00 0.00 0.00 3.66
3330 4611 5.697633 CCCCAATTTTGAAAACAGAGTCATG 59.302 40.000 0.00 0.00 0.00 3.07
3331 4612 5.366477 ACCCCAATTTTGAAAACAGAGTCAT 59.634 36.000 0.00 0.00 0.00 3.06
3332 4613 4.714308 ACCCCAATTTTGAAAACAGAGTCA 59.286 37.500 0.00 0.00 0.00 3.41
3333 4614 5.276461 ACCCCAATTTTGAAAACAGAGTC 57.724 39.130 0.00 0.00 0.00 3.36
3365 4673 4.833478 AAAGAGAGTCATGTATGTGGCT 57.167 40.909 0.00 0.00 36.61 4.75
3369 4677 9.903682 CAATTTTGAAAAGAGAGTCATGTATGT 57.096 29.630 0.00 0.00 0.00 2.29
3374 4682 6.161381 CCCCAATTTTGAAAAGAGAGTCATG 58.839 40.000 0.00 0.00 0.00 3.07
3375 4683 5.840693 ACCCCAATTTTGAAAAGAGAGTCAT 59.159 36.000 0.00 0.00 0.00 3.06
3376 4684 5.208121 ACCCCAATTTTGAAAAGAGAGTCA 58.792 37.500 0.00 0.00 0.00 3.41
3377 4685 5.791336 ACCCCAATTTTGAAAAGAGAGTC 57.209 39.130 0.00 0.00 0.00 3.36
3378 4686 6.133356 TGTACCCCAATTTTGAAAAGAGAGT 58.867 36.000 0.00 0.00 0.00 3.24
3380 4688 6.369629 TCTGTACCCCAATTTTGAAAAGAGA 58.630 36.000 0.00 0.00 0.00 3.10
3381 4689 6.648879 TCTGTACCCCAATTTTGAAAAGAG 57.351 37.500 0.00 0.00 0.00 2.85
3382 4690 7.425224 TTTCTGTACCCCAATTTTGAAAAGA 57.575 32.000 0.00 0.00 0.00 2.52
3383 4691 9.771534 TTATTTCTGTACCCCAATTTTGAAAAG 57.228 29.630 0.00 0.00 0.00 2.27
3384 4692 9.771534 CTTATTTCTGTACCCCAATTTTGAAAA 57.228 29.630 0.00 0.00 0.00 2.29
3385 4693 7.875554 GCTTATTTCTGTACCCCAATTTTGAAA 59.124 33.333 0.00 0.00 0.00 2.69
3386 4694 7.382898 GCTTATTTCTGTACCCCAATTTTGAA 58.617 34.615 0.00 0.00 0.00 2.69
3387 4695 6.071051 GGCTTATTTCTGTACCCCAATTTTGA 60.071 38.462 0.00 0.00 0.00 2.69
3388 4696 6.106003 GGCTTATTTCTGTACCCCAATTTTG 58.894 40.000 0.00 0.00 0.00 2.44
3392 4700 4.264172 TGTGGCTTATTTCTGTACCCCAAT 60.264 41.667 0.00 0.00 0.00 3.16
3393 4701 3.074687 TGTGGCTTATTTCTGTACCCCAA 59.925 43.478 0.00 0.00 0.00 4.12
3394 4702 2.645297 TGTGGCTTATTTCTGTACCCCA 59.355 45.455 0.00 0.00 0.00 4.96
3395 4703 3.359695 TGTGGCTTATTTCTGTACCCC 57.640 47.619 0.00 0.00 0.00 4.95
3396 4704 5.531287 CCTTATGTGGCTTATTTCTGTACCC 59.469 44.000 0.00 0.00 0.00 3.69
3397 4705 5.531287 CCCTTATGTGGCTTATTTCTGTACC 59.469 44.000 0.00 0.00 0.00 3.34
3398 4706 6.038271 CACCCTTATGTGGCTTATTTCTGTAC 59.962 42.308 0.00 0.00 32.50 2.90
3399 4707 6.069905 TCACCCTTATGTGGCTTATTTCTGTA 60.070 38.462 0.00 0.00 36.87 2.74
3400 4708 4.949856 CACCCTTATGTGGCTTATTTCTGT 59.050 41.667 0.00 0.00 32.50 3.41
3401 4709 5.192927 TCACCCTTATGTGGCTTATTTCTG 58.807 41.667 0.00 0.00 36.87 3.02
3402 4710 5.440610 CTCACCCTTATGTGGCTTATTTCT 58.559 41.667 0.00 0.00 36.87 2.52
3403 4711 4.036852 GCTCACCCTTATGTGGCTTATTTC 59.963 45.833 0.00 0.00 36.87 2.17
3404 4712 3.954258 GCTCACCCTTATGTGGCTTATTT 59.046 43.478 0.00 0.00 36.87 1.40
3407 4715 1.134521 CGCTCACCCTTATGTGGCTTA 60.135 52.381 0.00 0.00 36.87 3.09
3409 4717 1.221840 CGCTCACCCTTATGTGGCT 59.778 57.895 0.00 0.00 36.87 4.75
3410 4718 0.811616 CTCGCTCACCCTTATGTGGC 60.812 60.000 0.00 0.00 36.87 5.01
3411 4719 0.537188 ACTCGCTCACCCTTATGTGG 59.463 55.000 0.00 0.00 36.87 4.17
3412 4720 2.165641 TGTACTCGCTCACCCTTATGTG 59.834 50.000 0.00 0.00 37.59 3.21
3414 4722 3.319405 AGATGTACTCGCTCACCCTTATG 59.681 47.826 0.00 0.00 0.00 1.90
3415 4723 3.567397 AGATGTACTCGCTCACCCTTAT 58.433 45.455 0.00 0.00 0.00 1.73
3416 4724 3.014304 AGATGTACTCGCTCACCCTTA 57.986 47.619 0.00 0.00 0.00 2.69
3417 4725 1.853963 AGATGTACTCGCTCACCCTT 58.146 50.000 0.00 0.00 0.00 3.95
3430 4738 2.307768 CCTCCTGTAGGCGAAGATGTA 58.692 52.381 0.00 0.00 38.97 2.29
3451 4759 0.720027 GGTAGAAGCTTCGAAACCGC 59.280 55.000 23.82 8.62 0.00 5.68
3582 4901 0.396139 TGGATGGGCATTGCTCCTTC 60.396 55.000 5.96 13.14 0.00 3.46
3618 4937 2.383527 GCAGCGAAAGAGGACCACG 61.384 63.158 0.00 0.00 0.00 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.