Multiple sequence alignment - TraesCS4D01G022200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G022200 chr4D 100.000 2739 0 0 1 2739 9339085 9336347 0.000000e+00 5059.0
1 TraesCS4D01G022200 chr4D 84.638 345 42 10 23 363 288431219 288431556 1.570000e-87 333.0
2 TraesCS4D01G022200 chr4A 85.439 1401 104 43 670 2002 594127821 594129189 0.000000e+00 1365.0
3 TraesCS4D01G022200 chr4A 92.627 434 26 4 2310 2739 594129787 594130218 1.080000e-173 619.0
4 TraesCS4D01G022200 chr4A 81.890 127 9 11 2203 2328 594129632 594129745 8.070000e-16 95.3
5 TraesCS4D01G022200 chr4B 83.578 816 70 38 728 1491 17380340 17379537 0.000000e+00 706.0
6 TraesCS4D01G022200 chr4B 84.097 698 52 30 1617 2287 17379528 17378863 1.080000e-173 619.0
7 TraesCS4D01G022200 chr4B 92.584 418 26 3 2327 2739 17378780 17378363 1.820000e-166 595.0
8 TraesCS4D01G022200 chr4B 84.679 483 33 22 536 998 17441622 17441161 6.960000e-121 444.0
9 TraesCS4D01G022200 chr4B 84.639 319 35 10 52 363 281733710 281733399 3.430000e-79 305.0
10 TraesCS4D01G022200 chr4B 90.090 111 10 1 1218 1328 17439393 17439284 2.840000e-30 143.0
11 TraesCS4D01G022200 chr5B 87.066 317 36 4 1 315 396620723 396621036 1.210000e-93 353.0
12 TraesCS4D01G022200 chr5B 84.953 319 38 8 47 363 554591820 554591510 5.690000e-82 315.0
13 TraesCS4D01G022200 chr5A 85.627 327 36 9 47 369 169820749 169820430 1.570000e-87 333.0
14 TraesCS4D01G022200 chr7D 86.622 299 31 5 31 324 45932588 45932882 3.400000e-84 322.0
15 TraesCS4D01G022200 chrUn 87.500 280 28 6 47 324 42208692 42208966 1.580000e-82 316.0
16 TraesCS4D01G022200 chr2D 83.544 316 45 5 1 314 9649359 9649049 3.450000e-74 289.0
17 TraesCS4D01G022200 chr2D 84.127 315 33 11 51 363 311655266 311655565 3.450000e-74 289.0
18 TraesCS4D01G022200 chr2B 83.333 72 10 2 374 444 452595137 452595207 6.330000e-07 65.8
19 TraesCS4D01G022200 chr6B 94.872 39 2 0 340 378 437845792 437845754 8.190000e-06 62.1
20 TraesCS4D01G022200 chr6A 97.059 34 1 0 1786 1819 117054995 117055028 1.060000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G022200 chr4D 9336347 9339085 2738 True 5059.0 5059 100.0000 1 2739 1 chr4D.!!$R1 2738
1 TraesCS4D01G022200 chr4A 594127821 594130218 2397 False 693.1 1365 86.6520 670 2739 3 chr4A.!!$F1 2069
2 TraesCS4D01G022200 chr4B 17378363 17380340 1977 True 640.0 706 86.7530 728 2739 3 chr4B.!!$R2 2011
3 TraesCS4D01G022200 chr4B 17439284 17441622 2338 True 293.5 444 87.3845 536 1328 2 chr4B.!!$R3 792

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
106 107 0.036858 GAGTGCAGGAGTGTCTTCCC 60.037 60.0 0.00 0.0 38.02 3.97 F
531 532 0.111398 GAACGAACGAAACCTGACGC 60.111 55.0 0.14 0.0 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1034 1108 0.174617 CTCGTGCCTCTTCTCCCTTC 59.825 60.0 0.0 0.0 0.0 3.46 R
2101 4199 0.468226 TGTGATTCTATGGGCCGGTC 59.532 55.0 1.9 0.0 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.121974 GTTATCATTATCCCATCTGACAACG 57.878 40.000 0.00 0.00 0.00 4.10
25 26 5.551305 ATCATTATCCCATCTGACAACGA 57.449 39.130 0.00 0.00 0.00 3.85
26 27 4.948847 TCATTATCCCATCTGACAACGAG 58.051 43.478 0.00 0.00 0.00 4.18
27 28 3.819564 TTATCCCATCTGACAACGAGG 57.180 47.619 0.00 0.00 0.00 4.63
28 29 1.573108 ATCCCATCTGACAACGAGGT 58.427 50.000 0.00 0.00 0.00 3.85
29 30 0.895530 TCCCATCTGACAACGAGGTC 59.104 55.000 0.00 0.00 38.29 3.85
30 31 0.458543 CCCATCTGACAACGAGGTCG 60.459 60.000 0.00 0.00 46.33 4.79
31 32 0.526211 CCATCTGACAACGAGGTCGA 59.474 55.000 6.35 0.00 43.02 4.20
32 33 1.067846 CCATCTGACAACGAGGTCGAA 60.068 52.381 6.35 0.00 43.02 3.71
33 34 2.254459 CATCTGACAACGAGGTCGAAG 58.746 52.381 6.35 0.52 43.02 3.79
34 35 0.596577 TCTGACAACGAGGTCGAAGG 59.403 55.000 6.35 0.00 43.02 3.46
35 36 1.006571 TGACAACGAGGTCGAAGGC 60.007 57.895 6.35 0.62 43.02 4.35
36 37 2.049433 ACAACGAGGTCGAAGGCG 60.049 61.111 6.35 0.00 43.02 5.52
37 38 2.809601 CAACGAGGTCGAAGGCGG 60.810 66.667 6.35 0.00 43.02 6.13
38 39 4.736896 AACGAGGTCGAAGGCGGC 62.737 66.667 6.35 0.00 43.02 6.53
41 42 4.856607 GAGGTCGAAGGCGGCGAG 62.857 72.222 12.98 0.00 44.61 5.03
44 45 4.208686 GTCGAAGGCGGCGAGGAT 62.209 66.667 12.98 0.00 38.59 3.24
45 46 2.517638 TCGAAGGCGGCGAGGATA 60.518 61.111 12.98 0.00 38.28 2.59
46 47 2.049985 CGAAGGCGGCGAGGATAG 60.050 66.667 12.98 0.00 0.00 2.08
47 48 2.356433 GAAGGCGGCGAGGATAGC 60.356 66.667 12.98 0.00 35.30 2.97
48 49 4.286320 AAGGCGGCGAGGATAGCG 62.286 66.667 12.98 0.00 37.72 4.26
53 54 4.708968 GGCGAGGATAGCGGCGAG 62.709 72.222 12.98 0.00 44.17 5.03
54 55 4.708968 GCGAGGATAGCGGCGAGG 62.709 72.222 12.98 0.00 0.00 4.63
55 56 3.288290 CGAGGATAGCGGCGAGGT 61.288 66.667 12.98 0.00 0.00 3.85
56 57 2.336809 GAGGATAGCGGCGAGGTG 59.663 66.667 12.98 0.00 0.00 4.00
57 58 3.214250 GAGGATAGCGGCGAGGTGG 62.214 68.421 12.98 0.00 0.00 4.61
58 59 4.301027 GGATAGCGGCGAGGTGGG 62.301 72.222 12.98 0.00 0.00 4.61
59 60 3.537874 GATAGCGGCGAGGTGGGT 61.538 66.667 12.98 0.00 0.00 4.51
60 61 3.792053 GATAGCGGCGAGGTGGGTG 62.792 68.421 12.98 0.00 0.00 4.61
67 68 3.770040 CGAGGTGGGTGGCGATGA 61.770 66.667 0.00 0.00 0.00 2.92
68 69 2.911143 GAGGTGGGTGGCGATGAT 59.089 61.111 0.00 0.00 0.00 2.45
69 70 1.524621 GAGGTGGGTGGCGATGATG 60.525 63.158 0.00 0.00 0.00 3.07
70 71 1.971505 GAGGTGGGTGGCGATGATGA 61.972 60.000 0.00 0.00 0.00 2.92
71 72 1.524621 GGTGGGTGGCGATGATGAG 60.525 63.158 0.00 0.00 0.00 2.90
72 73 1.524621 GTGGGTGGCGATGATGAGG 60.525 63.158 0.00 0.00 0.00 3.86
73 74 1.688884 TGGGTGGCGATGATGAGGA 60.689 57.895 0.00 0.00 0.00 3.71
74 75 1.070445 GGGTGGCGATGATGAGGAG 59.930 63.158 0.00 0.00 0.00 3.69
75 76 1.402896 GGGTGGCGATGATGAGGAGA 61.403 60.000 0.00 0.00 0.00 3.71
76 77 0.683973 GGTGGCGATGATGAGGAGAT 59.316 55.000 0.00 0.00 0.00 2.75
77 78 1.071385 GGTGGCGATGATGAGGAGATT 59.929 52.381 0.00 0.00 0.00 2.40
78 79 2.141517 GTGGCGATGATGAGGAGATTG 58.858 52.381 0.00 0.00 0.00 2.67
79 80 2.041701 TGGCGATGATGAGGAGATTGA 58.958 47.619 0.00 0.00 0.00 2.57
80 81 2.224137 TGGCGATGATGAGGAGATTGAC 60.224 50.000 0.00 0.00 0.00 3.18
81 82 2.224137 GGCGATGATGAGGAGATTGACA 60.224 50.000 0.00 0.00 0.00 3.58
82 83 3.556633 GGCGATGATGAGGAGATTGACAT 60.557 47.826 0.00 0.00 0.00 3.06
83 84 3.679025 GCGATGATGAGGAGATTGACATC 59.321 47.826 0.00 0.00 39.35 3.06
84 85 3.919197 CGATGATGAGGAGATTGACATCG 59.081 47.826 0.00 0.00 45.21 3.84
85 86 5.131594 GATGATGAGGAGATTGACATCGA 57.868 43.478 0.00 0.00 41.04 3.59
86 87 5.536260 GATGATGAGGAGATTGACATCGAA 58.464 41.667 0.00 0.00 41.04 3.71
87 88 4.941657 TGATGAGGAGATTGACATCGAAG 58.058 43.478 0.00 0.00 41.04 3.79
88 89 4.646492 TGATGAGGAGATTGACATCGAAGA 59.354 41.667 0.00 0.00 41.04 2.87
89 90 4.645762 TGAGGAGATTGACATCGAAGAG 57.354 45.455 0.00 0.00 43.63 2.85
90 91 4.019858 TGAGGAGATTGACATCGAAGAGT 58.980 43.478 0.00 0.00 43.63 3.24
91 92 4.142293 TGAGGAGATTGACATCGAAGAGTG 60.142 45.833 0.00 0.00 43.63 3.51
92 93 2.863137 GGAGATTGACATCGAAGAGTGC 59.137 50.000 0.00 0.00 43.63 4.40
93 94 3.515630 GAGATTGACATCGAAGAGTGCA 58.484 45.455 0.00 0.00 43.63 4.57
94 95 3.519579 AGATTGACATCGAAGAGTGCAG 58.480 45.455 0.00 0.00 43.63 4.41
95 96 2.084610 TTGACATCGAAGAGTGCAGG 57.915 50.000 0.00 0.00 43.63 4.85
96 97 1.256812 TGACATCGAAGAGTGCAGGA 58.743 50.000 0.00 0.00 43.63 3.86
97 98 1.203287 TGACATCGAAGAGTGCAGGAG 59.797 52.381 0.00 0.00 43.63 3.69
98 99 1.203523 GACATCGAAGAGTGCAGGAGT 59.796 52.381 0.00 0.00 43.63 3.85
99 100 1.067283 ACATCGAAGAGTGCAGGAGTG 60.067 52.381 0.00 0.00 43.63 3.51
100 101 1.067283 CATCGAAGAGTGCAGGAGTGT 60.067 52.381 0.00 0.00 43.63 3.55
101 102 0.598562 TCGAAGAGTGCAGGAGTGTC 59.401 55.000 0.00 0.00 0.00 3.67
102 103 0.600557 CGAAGAGTGCAGGAGTGTCT 59.399 55.000 0.00 0.00 0.00 3.41
103 104 1.000283 CGAAGAGTGCAGGAGTGTCTT 60.000 52.381 0.00 0.00 0.00 3.01
104 105 2.682836 GAAGAGTGCAGGAGTGTCTTC 58.317 52.381 0.00 0.00 37.17 2.87
105 106 0.972883 AGAGTGCAGGAGTGTCTTCC 59.027 55.000 0.00 0.00 37.52 3.46
106 107 0.036858 GAGTGCAGGAGTGTCTTCCC 60.037 60.000 0.00 0.00 38.02 3.97
107 108 1.003233 GTGCAGGAGTGTCTTCCCC 60.003 63.158 0.00 0.00 38.02 4.81
108 109 1.461268 TGCAGGAGTGTCTTCCCCA 60.461 57.895 0.00 0.00 38.02 4.96
109 110 1.059584 TGCAGGAGTGTCTTCCCCAA 61.060 55.000 0.00 0.00 38.02 4.12
110 111 0.606673 GCAGGAGTGTCTTCCCCAAC 60.607 60.000 0.00 0.00 38.02 3.77
111 112 0.320771 CAGGAGTGTCTTCCCCAACG 60.321 60.000 0.00 0.00 38.02 4.10
112 113 0.471211 AGGAGTGTCTTCCCCAACGA 60.471 55.000 0.00 0.00 38.02 3.85
113 114 0.320508 GGAGTGTCTTCCCCAACGAC 60.321 60.000 0.00 0.00 0.00 4.34
114 115 0.320508 GAGTGTCTTCCCCAACGACC 60.321 60.000 0.00 0.00 0.00 4.79
115 116 1.302271 GTGTCTTCCCCAACGACCC 60.302 63.158 0.00 0.00 0.00 4.46
116 117 2.350134 GTCTTCCCCAACGACCCC 59.650 66.667 0.00 0.00 0.00 4.95
117 118 3.315949 TCTTCCCCAACGACCCCG 61.316 66.667 0.00 0.00 42.50 5.73
118 119 4.404098 CTTCCCCAACGACCCCGG 62.404 72.222 0.00 0.00 40.78 5.73
175 176 3.166489 GTACCTGACGAGGAAGGATTG 57.834 52.381 0.00 0.00 42.93 2.67
176 177 0.905357 ACCTGACGAGGAAGGATTGG 59.095 55.000 0.00 0.00 42.93 3.16
177 178 0.462759 CCTGACGAGGAAGGATTGGC 60.463 60.000 0.00 0.00 42.93 4.52
178 179 0.539051 CTGACGAGGAAGGATTGGCT 59.461 55.000 0.00 0.00 0.00 4.75
179 180 0.537188 TGACGAGGAAGGATTGGCTC 59.463 55.000 0.00 0.00 0.00 4.70
180 181 0.528684 GACGAGGAAGGATTGGCTCG 60.529 60.000 0.00 0.00 39.77 5.03
181 182 0.970937 ACGAGGAAGGATTGGCTCGA 60.971 55.000 0.00 0.00 37.69 4.04
182 183 0.528684 CGAGGAAGGATTGGCTCGAC 60.529 60.000 0.00 0.00 36.57 4.20
183 184 0.179070 GAGGAAGGATTGGCTCGACC 60.179 60.000 0.00 0.00 39.84 4.79
184 185 0.618968 AGGAAGGATTGGCTCGACCT 60.619 55.000 5.77 0.00 40.22 3.85
185 186 0.179070 GGAAGGATTGGCTCGACCTC 60.179 60.000 5.77 0.00 40.22 3.85
186 187 0.179070 GAAGGATTGGCTCGACCTCC 60.179 60.000 5.77 5.33 40.22 4.30
187 188 0.909610 AAGGATTGGCTCGACCTCCA 60.910 55.000 11.96 4.36 35.58 3.86
188 189 1.153349 GGATTGGCTCGACCTCCAC 60.153 63.158 5.77 0.00 40.22 4.02
189 190 1.617947 GGATTGGCTCGACCTCCACT 61.618 60.000 5.77 0.00 40.22 4.00
190 191 0.250513 GATTGGCTCGACCTCCACTT 59.749 55.000 5.77 0.00 40.22 3.16
191 192 0.250513 ATTGGCTCGACCTCCACTTC 59.749 55.000 5.77 0.00 40.22 3.01
192 193 2.154798 TTGGCTCGACCTCCACTTCG 62.155 60.000 5.77 0.00 40.22 3.79
193 194 2.341101 GGCTCGACCTCCACTTCGA 61.341 63.158 0.00 0.00 41.83 3.71
194 195 1.153997 GCTCGACCTCCACTTCGAC 60.154 63.158 0.00 0.00 39.29 4.20
195 196 1.507174 CTCGACCTCCACTTCGACC 59.493 63.158 0.00 0.00 39.29 4.79
196 197 2.178521 CGACCTCCACTTCGACCG 59.821 66.667 0.00 0.00 37.43 4.79
197 198 2.572284 GACCTCCACTTCGACCGG 59.428 66.667 0.00 0.00 0.00 5.28
198 199 1.975407 GACCTCCACTTCGACCGGA 60.975 63.158 9.46 0.00 0.00 5.14
199 200 1.530013 GACCTCCACTTCGACCGGAA 61.530 60.000 9.46 0.00 0.00 4.30
209 210 4.431661 CTTCGACCGGAAGTAGTTTAGT 57.568 45.455 9.46 0.00 45.82 2.24
210 211 4.802999 CTTCGACCGGAAGTAGTTTAGTT 58.197 43.478 9.46 0.00 45.82 2.24
211 212 4.164822 TCGACCGGAAGTAGTTTAGTTG 57.835 45.455 9.46 0.00 0.00 3.16
212 213 2.665052 CGACCGGAAGTAGTTTAGTTGC 59.335 50.000 9.46 0.00 0.00 4.17
213 214 3.613432 CGACCGGAAGTAGTTTAGTTGCT 60.613 47.826 9.46 0.00 0.00 3.91
214 215 4.313282 GACCGGAAGTAGTTTAGTTGCTT 58.687 43.478 9.46 0.00 0.00 3.91
215 216 4.711399 ACCGGAAGTAGTTTAGTTGCTTT 58.289 39.130 9.46 0.00 0.00 3.51
216 217 5.128205 ACCGGAAGTAGTTTAGTTGCTTTT 58.872 37.500 9.46 0.00 0.00 2.27
217 218 6.290605 ACCGGAAGTAGTTTAGTTGCTTTTA 58.709 36.000 9.46 0.00 0.00 1.52
218 219 6.426025 ACCGGAAGTAGTTTAGTTGCTTTTAG 59.574 38.462 9.46 0.00 0.00 1.85
219 220 6.426025 CCGGAAGTAGTTTAGTTGCTTTTAGT 59.574 38.462 0.00 0.00 0.00 2.24
220 221 7.041576 CCGGAAGTAGTTTAGTTGCTTTTAGTT 60.042 37.037 0.00 0.00 0.00 2.24
221 222 8.340443 CGGAAGTAGTTTAGTTGCTTTTAGTTT 58.660 33.333 0.00 0.00 0.00 2.66
252 253 7.764695 ACTTTATGTTTTAGTTTGGTTGTGC 57.235 32.000 0.00 0.00 0.00 4.57
253 254 7.324178 ACTTTATGTTTTAGTTTGGTTGTGCA 58.676 30.769 0.00 0.00 0.00 4.57
254 255 7.819900 ACTTTATGTTTTAGTTTGGTTGTGCAA 59.180 29.630 0.00 0.00 0.00 4.08
255 256 8.547967 TTTATGTTTTAGTTTGGTTGTGCAAA 57.452 26.923 0.00 0.00 0.00 3.68
256 257 8.547967 TTATGTTTTAGTTTGGTTGTGCAAAA 57.452 26.923 0.00 0.00 0.00 2.44
257 258 6.861065 TGTTTTAGTTTGGTTGTGCAAAAA 57.139 29.167 0.00 0.00 0.00 1.94
258 259 6.659776 TGTTTTAGTTTGGTTGTGCAAAAAC 58.340 32.000 0.00 0.00 31.60 2.43
259 260 6.483640 TGTTTTAGTTTGGTTGTGCAAAAACT 59.516 30.769 6.16 14.95 33.46 2.66
260 261 7.656137 TGTTTTAGTTTGGTTGTGCAAAAACTA 59.344 29.630 6.16 10.14 33.46 2.24
261 262 8.661257 GTTTTAGTTTGGTTGTGCAAAAACTAT 58.339 29.630 6.16 0.00 33.46 2.12
262 263 7.995463 TTAGTTTGGTTGTGCAAAAACTATC 57.005 32.000 6.16 0.00 33.46 2.08
263 264 6.220726 AGTTTGGTTGTGCAAAAACTATCT 57.779 33.333 6.16 0.00 33.46 1.98
264 265 7.341445 AGTTTGGTTGTGCAAAAACTATCTA 57.659 32.000 6.16 0.00 33.46 1.98
265 266 7.200455 AGTTTGGTTGTGCAAAAACTATCTAC 58.800 34.615 6.16 0.00 33.46 2.59
266 267 5.351233 TGGTTGTGCAAAAACTATCTACG 57.649 39.130 6.16 0.00 33.46 3.51
267 268 4.817464 TGGTTGTGCAAAAACTATCTACGT 59.183 37.500 6.16 0.00 33.46 3.57
268 269 5.297278 TGGTTGTGCAAAAACTATCTACGTT 59.703 36.000 6.16 0.00 33.46 3.99
269 270 6.183360 TGGTTGTGCAAAAACTATCTACGTTT 60.183 34.615 6.16 0.00 33.46 3.60
270 271 7.012138 TGGTTGTGCAAAAACTATCTACGTTTA 59.988 33.333 6.16 0.00 33.46 2.01
271 272 8.019094 GGTTGTGCAAAAACTATCTACGTTTAT 58.981 33.333 11.99 0.00 33.46 1.40
272 273 8.837059 GTTGTGCAAAAACTATCTACGTTTATG 58.163 33.333 0.00 0.00 33.76 1.90
273 274 8.090250 TGTGCAAAAACTATCTACGTTTATGT 57.910 30.769 0.00 0.00 33.76 2.29
274 275 8.561212 TGTGCAAAAACTATCTACGTTTATGTT 58.439 29.630 0.00 0.00 33.76 2.71
275 276 9.389570 GTGCAAAAACTATCTACGTTTATGTTT 57.610 29.630 0.00 0.00 33.76 2.83
276 277 9.388346 TGCAAAAACTATCTACGTTTATGTTTG 57.612 29.630 0.00 0.00 33.76 2.93
277 278 9.601971 GCAAAAACTATCTACGTTTATGTTTGA 57.398 29.630 0.00 0.00 33.76 2.69
281 282 9.769093 AAACTATCTACGTTTATGTTTGAATGC 57.231 29.630 0.00 0.00 33.17 3.56
282 283 8.487313 ACTATCTACGTTTATGTTTGAATGCA 57.513 30.769 0.00 0.00 0.00 3.96
283 284 9.109393 ACTATCTACGTTTATGTTTGAATGCAT 57.891 29.630 0.00 0.00 0.00 3.96
284 285 9.373750 CTATCTACGTTTATGTTTGAATGCATG 57.626 33.333 0.00 0.00 0.00 4.06
285 286 7.139896 TCTACGTTTATGTTTGAATGCATGT 57.860 32.000 0.00 0.00 0.00 3.21
286 287 7.589395 TCTACGTTTATGTTTGAATGCATGTT 58.411 30.769 0.00 0.00 0.00 2.71
287 288 8.722394 TCTACGTTTATGTTTGAATGCATGTTA 58.278 29.630 0.00 0.00 0.00 2.41
288 289 7.561237 ACGTTTATGTTTGAATGCATGTTAC 57.439 32.000 0.00 0.00 0.00 2.50
289 290 7.367285 ACGTTTATGTTTGAATGCATGTTACT 58.633 30.769 0.00 0.00 0.00 2.24
290 291 7.865385 ACGTTTATGTTTGAATGCATGTTACTT 59.135 29.630 0.00 0.00 0.00 2.24
291 292 8.698854 CGTTTATGTTTGAATGCATGTTACTTT 58.301 29.630 0.00 0.00 0.00 2.66
294 295 6.841443 TGTTTGAATGCATGTTACTTTTGG 57.159 33.333 0.00 0.00 0.00 3.28
295 296 6.344500 TGTTTGAATGCATGTTACTTTTGGT 58.656 32.000 0.00 0.00 0.00 3.67
296 297 6.820656 TGTTTGAATGCATGTTACTTTTGGTT 59.179 30.769 0.00 0.00 0.00 3.67
297 298 7.010923 TGTTTGAATGCATGTTACTTTTGGTTC 59.989 33.333 0.00 0.00 0.00 3.62
298 299 6.154203 TGAATGCATGTTACTTTTGGTTCA 57.846 33.333 0.00 0.00 0.00 3.18
299 300 6.577103 TGAATGCATGTTACTTTTGGTTCAA 58.423 32.000 0.00 0.00 0.00 2.69
300 301 7.044181 TGAATGCATGTTACTTTTGGTTCAAA 58.956 30.769 0.00 0.00 0.00 2.69
301 302 7.714377 TGAATGCATGTTACTTTTGGTTCAAAT 59.286 29.630 0.00 0.00 33.19 2.32
302 303 8.449251 AATGCATGTTACTTTTGGTTCAAATT 57.551 26.923 0.00 0.00 33.19 1.82
303 304 7.244166 TGCATGTTACTTTTGGTTCAAATTG 57.756 32.000 0.00 0.00 33.19 2.32
304 305 6.135400 GCATGTTACTTTTGGTTCAAATTGC 58.865 36.000 0.00 0.00 33.19 3.56
305 306 6.018016 GCATGTTACTTTTGGTTCAAATTGCT 60.018 34.615 0.00 0.00 33.19 3.91
306 307 7.467131 GCATGTTACTTTTGGTTCAAATTGCTT 60.467 33.333 0.00 0.00 33.19 3.91
307 308 7.913674 TGTTACTTTTGGTTCAAATTGCTTT 57.086 28.000 0.00 0.00 33.19 3.51
308 309 7.746929 TGTTACTTTTGGTTCAAATTGCTTTG 58.253 30.769 0.00 0.00 42.60 2.77
309 310 7.604164 TGTTACTTTTGGTTCAAATTGCTTTGA 59.396 29.630 0.00 0.00 46.92 2.69
331 332 6.635030 GAACTTGGTTCAAATTAGTGGAGT 57.365 37.500 5.65 0.00 41.62 3.85
332 333 7.739498 GAACTTGGTTCAAATTAGTGGAGTA 57.261 36.000 5.65 0.00 41.62 2.59
333 334 8.336801 GAACTTGGTTCAAATTAGTGGAGTAT 57.663 34.615 5.65 0.00 41.62 2.12
334 335 9.444600 GAACTTGGTTCAAATTAGTGGAGTATA 57.555 33.333 5.65 0.00 41.62 1.47
335 336 9.975218 AACTTGGTTCAAATTAGTGGAGTATAT 57.025 29.630 0.00 0.00 0.00 0.86
359 360 4.790718 ACTAATTTTTAGGGGATCGGCT 57.209 40.909 0.00 0.00 0.00 5.52
360 361 5.899631 ACTAATTTTTAGGGGATCGGCTA 57.100 39.130 0.00 0.00 0.00 3.93
361 362 5.866207 ACTAATTTTTAGGGGATCGGCTAG 58.134 41.667 0.00 0.00 0.00 3.42
362 363 5.605488 ACTAATTTTTAGGGGATCGGCTAGA 59.395 40.000 0.00 0.00 0.00 2.43
363 364 4.625607 ATTTTTAGGGGATCGGCTAGAG 57.374 45.455 0.00 0.00 0.00 2.43
364 365 3.323774 TTTTAGGGGATCGGCTAGAGA 57.676 47.619 0.00 0.00 0.00 3.10
365 366 3.544698 TTTAGGGGATCGGCTAGAGAT 57.455 47.619 0.00 0.00 0.00 2.75
366 367 2.516227 TAGGGGATCGGCTAGAGATG 57.484 55.000 5.96 0.00 0.00 2.90
367 368 0.902516 AGGGGATCGGCTAGAGATGC 60.903 60.000 10.29 10.29 36.00 3.91
368 369 1.594310 GGGATCGGCTAGAGATGCC 59.406 63.158 18.32 18.32 46.51 4.40
369 370 1.893919 GGGATCGGCTAGAGATGCCC 61.894 65.000 20.83 17.24 46.70 5.36
376 377 1.275010 GGCTAGAGATGCCCTTAGAGC 59.725 57.143 0.00 0.00 44.32 4.09
377 378 1.967066 GCTAGAGATGCCCTTAGAGCA 59.033 52.381 0.00 0.00 45.94 4.26
378 379 2.029110 GCTAGAGATGCCCTTAGAGCAG 60.029 54.545 0.00 0.00 44.90 4.24
379 380 0.758123 AGAGATGCCCTTAGAGCAGC 59.242 55.000 0.00 0.00 46.77 5.25
381 382 3.483954 GATGCCCTTAGAGCAGCAA 57.516 52.632 0.00 0.00 45.72 3.91
382 383 1.978454 GATGCCCTTAGAGCAGCAAT 58.022 50.000 0.00 0.00 45.72 3.56
383 384 1.878734 GATGCCCTTAGAGCAGCAATC 59.121 52.381 0.00 0.00 45.72 2.67
384 385 0.620030 TGCCCTTAGAGCAGCAATCA 59.380 50.000 0.00 0.00 34.69 2.57
385 386 1.004628 TGCCCTTAGAGCAGCAATCAA 59.995 47.619 0.00 0.00 34.69 2.57
386 387 2.305009 GCCCTTAGAGCAGCAATCAAT 58.695 47.619 0.00 0.00 0.00 2.57
387 388 3.117926 TGCCCTTAGAGCAGCAATCAATA 60.118 43.478 0.00 0.00 34.69 1.90
388 389 3.501445 GCCCTTAGAGCAGCAATCAATAG 59.499 47.826 0.00 0.00 0.00 1.73
389 390 3.501445 CCCTTAGAGCAGCAATCAATAGC 59.499 47.826 0.00 0.00 0.00 2.97
390 391 3.501445 CCTTAGAGCAGCAATCAATAGCC 59.499 47.826 0.00 0.00 0.00 3.93
391 392 2.723322 AGAGCAGCAATCAATAGCCA 57.277 45.000 0.00 0.00 0.00 4.75
392 393 3.008835 AGAGCAGCAATCAATAGCCAA 57.991 42.857 0.00 0.00 0.00 4.52
393 394 3.359033 AGAGCAGCAATCAATAGCCAAA 58.641 40.909 0.00 0.00 0.00 3.28
394 395 3.765511 AGAGCAGCAATCAATAGCCAAAA 59.234 39.130 0.00 0.00 0.00 2.44
395 396 4.221262 AGAGCAGCAATCAATAGCCAAAAA 59.779 37.500 0.00 0.00 0.00 1.94
418 419 9.554395 AAAAATCGACTGACCCAAATTTAATTT 57.446 25.926 0.00 0.00 0.00 1.82
419 420 9.554395 AAAATCGACTGACCCAAATTTAATTTT 57.446 25.926 0.00 0.00 0.00 1.82
420 421 8.757164 AATCGACTGACCCAAATTTAATTTTC 57.243 30.769 0.00 0.00 0.00 2.29
421 422 7.278461 TCGACTGACCCAAATTTAATTTTCA 57.722 32.000 0.00 2.25 0.00 2.69
422 423 7.717568 TCGACTGACCCAAATTTAATTTTCAA 58.282 30.769 0.00 0.00 0.00 2.69
423 424 7.865385 TCGACTGACCCAAATTTAATTTTCAAG 59.135 33.333 0.00 1.14 0.00 3.02
424 425 7.359181 CGACTGACCCAAATTTAATTTTCAAGC 60.359 37.037 0.00 0.00 0.00 4.01
425 426 6.423604 ACTGACCCAAATTTAATTTTCAAGCG 59.576 34.615 0.00 0.00 0.00 4.68
426 427 6.516718 TGACCCAAATTTAATTTTCAAGCGA 58.483 32.000 0.00 0.00 0.00 4.93
427 428 6.422400 TGACCCAAATTTAATTTTCAAGCGAC 59.578 34.615 0.00 0.00 0.00 5.19
428 429 6.521162 ACCCAAATTTAATTTTCAAGCGACT 58.479 32.000 0.00 0.00 0.00 4.18
429 430 6.989759 ACCCAAATTTAATTTTCAAGCGACTT 59.010 30.769 0.00 0.00 0.00 3.01
430 431 8.145122 ACCCAAATTTAATTTTCAAGCGACTTA 58.855 29.630 0.00 0.00 0.00 2.24
431 432 9.150348 CCCAAATTTAATTTTCAAGCGACTTAT 57.850 29.630 0.00 0.00 0.00 1.73
449 450 8.370711 CGACTTATCGTATAGCTAAAGTGATG 57.629 38.462 10.26 0.00 43.66 3.07
450 451 8.228464 CGACTTATCGTATAGCTAAAGTGATGA 58.772 37.037 10.26 3.05 43.66 2.92
455 456 8.809468 ATCGTATAGCTAAAGTGATGATAGGA 57.191 34.615 0.00 0.00 0.00 2.94
456 457 8.631480 TCGTATAGCTAAAGTGATGATAGGAA 57.369 34.615 0.00 0.00 0.00 3.36
457 458 9.074576 TCGTATAGCTAAAGTGATGATAGGAAA 57.925 33.333 0.00 0.00 0.00 3.13
458 459 9.692749 CGTATAGCTAAAGTGATGATAGGAAAA 57.307 33.333 0.00 0.00 0.00 2.29
463 464 9.520515 AGCTAAAGTGATGATAGGAAAAGAAAA 57.479 29.630 0.00 0.00 0.00 2.29
469 470 9.690913 AGTGATGATAGGAAAAGAAAATGATGA 57.309 29.630 0.00 0.00 0.00 2.92
470 471 9.947669 GTGATGATAGGAAAAGAAAATGATGAG 57.052 33.333 0.00 0.00 0.00 2.90
471 472 9.128404 TGATGATAGGAAAAGAAAATGATGAGG 57.872 33.333 0.00 0.00 0.00 3.86
472 473 7.886629 TGATAGGAAAAGAAAATGATGAGGG 57.113 36.000 0.00 0.00 0.00 4.30
473 474 7.642186 TGATAGGAAAAGAAAATGATGAGGGA 58.358 34.615 0.00 0.00 0.00 4.20
474 475 8.115384 TGATAGGAAAAGAAAATGATGAGGGAA 58.885 33.333 0.00 0.00 0.00 3.97
475 476 6.847421 AGGAAAAGAAAATGATGAGGGAAG 57.153 37.500 0.00 0.00 0.00 3.46
476 477 6.555711 AGGAAAAGAAAATGATGAGGGAAGA 58.444 36.000 0.00 0.00 0.00 2.87
477 478 7.187676 AGGAAAAGAAAATGATGAGGGAAGAT 58.812 34.615 0.00 0.00 0.00 2.40
478 479 8.339247 AGGAAAAGAAAATGATGAGGGAAGATA 58.661 33.333 0.00 0.00 0.00 1.98
479 480 9.140874 GGAAAAGAAAATGATGAGGGAAGATAT 57.859 33.333 0.00 0.00 0.00 1.63
480 481 9.962783 GAAAAGAAAATGATGAGGGAAGATATG 57.037 33.333 0.00 0.00 0.00 1.78
481 482 7.521871 AAGAAAATGATGAGGGAAGATATGC 57.478 36.000 0.00 0.00 0.00 3.14
482 483 6.008960 AGAAAATGATGAGGGAAGATATGCC 58.991 40.000 0.00 0.00 40.55 4.40
483 484 4.313020 AATGATGAGGGAAGATATGCCC 57.687 45.455 0.00 0.00 41.34 5.36
490 491 2.640316 GGAAGATATGCCCTTCCGTT 57.360 50.000 6.21 0.00 46.88 4.44
491 492 2.222027 GGAAGATATGCCCTTCCGTTG 58.778 52.381 6.21 0.00 46.88 4.10
492 493 2.222027 GAAGATATGCCCTTCCGTTGG 58.778 52.381 0.00 0.00 35.26 3.77
493 494 1.507140 AGATATGCCCTTCCGTTGGA 58.493 50.000 0.00 0.00 0.00 3.53
494 495 2.057922 AGATATGCCCTTCCGTTGGAT 58.942 47.619 0.00 0.00 0.00 3.41
495 496 2.039084 AGATATGCCCTTCCGTTGGATC 59.961 50.000 0.00 0.00 0.00 3.36
496 497 0.472471 TATGCCCTTCCGTTGGATCC 59.528 55.000 4.20 4.20 0.00 3.36
497 498 1.570857 ATGCCCTTCCGTTGGATCCA 61.571 55.000 11.44 11.44 0.00 3.41
498 499 1.227383 GCCCTTCCGTTGGATCCAT 59.773 57.895 17.06 0.00 0.00 3.41
499 500 0.395724 GCCCTTCCGTTGGATCCATT 60.396 55.000 17.06 0.00 0.00 3.16
500 501 1.959989 GCCCTTCCGTTGGATCCATTT 60.960 52.381 17.06 0.00 0.00 2.32
501 502 2.685522 GCCCTTCCGTTGGATCCATTTA 60.686 50.000 17.06 0.00 0.00 1.40
502 503 3.832527 CCCTTCCGTTGGATCCATTTAT 58.167 45.455 17.06 0.00 0.00 1.40
503 504 3.569701 CCCTTCCGTTGGATCCATTTATG 59.430 47.826 17.06 6.20 0.00 1.90
504 505 4.460263 CCTTCCGTTGGATCCATTTATGA 58.540 43.478 17.06 5.61 0.00 2.15
505 506 4.275936 CCTTCCGTTGGATCCATTTATGAC 59.724 45.833 17.06 8.66 0.00 3.06
506 507 4.771114 TCCGTTGGATCCATTTATGACT 57.229 40.909 17.06 0.00 0.00 3.41
507 508 4.703897 TCCGTTGGATCCATTTATGACTC 58.296 43.478 17.06 0.00 0.00 3.36
508 509 3.815401 CCGTTGGATCCATTTATGACTCC 59.185 47.826 17.06 0.00 0.00 3.85
509 510 4.444876 CCGTTGGATCCATTTATGACTCCT 60.445 45.833 17.06 0.00 32.65 3.69
510 511 5.126067 CGTTGGATCCATTTATGACTCCTT 58.874 41.667 17.06 0.00 32.65 3.36
511 512 5.008019 CGTTGGATCCATTTATGACTCCTTG 59.992 44.000 17.06 0.00 32.65 3.61
512 513 5.052693 TGGATCCATTTATGACTCCTTGG 57.947 43.478 11.44 0.00 32.65 3.61
513 514 4.726317 TGGATCCATTTATGACTCCTTGGA 59.274 41.667 11.44 0.00 37.63 3.53
514 515 5.193527 TGGATCCATTTATGACTCCTTGGAA 59.806 40.000 11.44 0.00 36.87 3.53
515 516 5.532779 GGATCCATTTATGACTCCTTGGAAC 59.467 44.000 6.95 0.00 36.87 3.62
516 517 4.513442 TCCATTTATGACTCCTTGGAACG 58.487 43.478 0.00 0.00 30.62 3.95
517 518 4.224147 TCCATTTATGACTCCTTGGAACGA 59.776 41.667 0.00 0.00 30.62 3.85
518 519 4.941263 CCATTTATGACTCCTTGGAACGAA 59.059 41.667 0.00 0.00 0.00 3.85
519 520 5.163754 CCATTTATGACTCCTTGGAACGAAC 60.164 44.000 0.00 0.00 0.00 3.95
520 521 2.080286 ATGACTCCTTGGAACGAACG 57.920 50.000 0.00 0.00 0.00 3.95
521 522 1.034356 TGACTCCTTGGAACGAACGA 58.966 50.000 0.14 0.00 0.00 3.85
522 523 1.409790 TGACTCCTTGGAACGAACGAA 59.590 47.619 0.14 0.00 0.00 3.85
523 524 2.159071 TGACTCCTTGGAACGAACGAAA 60.159 45.455 0.14 0.00 0.00 3.46
524 525 2.207590 ACTCCTTGGAACGAACGAAAC 58.792 47.619 0.14 0.00 0.00 2.78
525 526 1.529865 CTCCTTGGAACGAACGAAACC 59.470 52.381 0.14 2.29 0.00 3.27
526 527 1.139455 TCCTTGGAACGAACGAAACCT 59.861 47.619 0.14 0.00 0.00 3.50
527 528 1.263217 CCTTGGAACGAACGAAACCTG 59.737 52.381 0.14 0.48 0.00 4.00
528 529 2.206750 CTTGGAACGAACGAAACCTGA 58.793 47.619 0.14 0.00 0.00 3.86
529 530 1.574134 TGGAACGAACGAAACCTGAC 58.426 50.000 0.14 0.00 0.00 3.51
530 531 0.505655 GGAACGAACGAAACCTGACG 59.494 55.000 0.14 0.00 0.00 4.35
531 532 0.111398 GAACGAACGAAACCTGACGC 60.111 55.000 0.14 0.00 0.00 5.19
532 533 1.814211 AACGAACGAAACCTGACGCG 61.814 55.000 3.53 3.53 0.00 6.01
533 534 2.170273 GAACGAAACCTGACGCGC 59.830 61.111 5.73 0.00 0.00 6.86
534 535 3.609422 GAACGAAACCTGACGCGCG 62.609 63.158 30.96 30.96 0.00 6.86
558 559 0.880278 TCTTTGAGCACACCGAGCAC 60.880 55.000 0.00 0.00 0.00 4.40
598 599 4.329545 GCGAGGCAGGTTGGTGGA 62.330 66.667 0.00 0.00 0.00 4.02
599 600 2.046892 CGAGGCAGGTTGGTGGAG 60.047 66.667 0.00 0.00 0.00 3.86
600 601 2.352805 GAGGCAGGTTGGTGGAGG 59.647 66.667 0.00 0.00 0.00 4.30
601 602 3.927481 GAGGCAGGTTGGTGGAGGC 62.927 68.421 0.00 0.00 0.00 4.70
602 603 3.971702 GGCAGGTTGGTGGAGGCT 61.972 66.667 0.00 0.00 0.00 4.58
603 604 2.116125 GCAGGTTGGTGGAGGCTT 59.884 61.111 0.00 0.00 0.00 4.35
604 605 2.270986 GCAGGTTGGTGGAGGCTTG 61.271 63.158 0.00 0.00 0.00 4.01
605 606 1.604593 CAGGTTGGTGGAGGCTTGG 60.605 63.158 0.00 0.00 0.00 3.61
606 607 2.991540 GGTTGGTGGAGGCTTGGC 60.992 66.667 0.00 0.00 0.00 4.52
607 608 2.203480 GTTGGTGGAGGCTTGGCA 60.203 61.111 0.00 0.00 0.00 4.92
608 609 1.607467 GTTGGTGGAGGCTTGGCAT 60.607 57.895 0.00 0.00 0.00 4.40
609 610 1.155859 TTGGTGGAGGCTTGGCATT 59.844 52.632 0.00 0.00 0.00 3.56
610 611 0.899717 TTGGTGGAGGCTTGGCATTC 60.900 55.000 0.00 0.00 0.00 2.67
611 612 1.304381 GGTGGAGGCTTGGCATTCA 60.304 57.895 0.00 0.00 0.00 2.57
612 613 0.899717 GGTGGAGGCTTGGCATTCAA 60.900 55.000 0.00 0.00 26.63 2.69
624 625 2.299582 TGGCATTCAAAATGTGACCCTG 59.700 45.455 1.99 0.00 35.39 4.45
635 636 2.214216 TGACCCTGTCCGGACTTGG 61.214 63.158 33.39 31.40 33.16 3.61
636 637 3.607370 GACCCTGTCCGGACTTGGC 62.607 68.421 33.39 20.45 33.16 4.52
651 652 2.044053 GGCAATGGTAGCCCTGCA 60.044 61.111 14.87 0.00 46.50 4.41
653 654 2.764314 GCAATGGTAGCCCTGCACG 61.764 63.158 9.70 0.00 33.34 5.34
654 655 2.438434 AATGGTAGCCCTGCACGC 60.438 61.111 0.00 0.00 0.00 5.34
655 656 3.266686 AATGGTAGCCCTGCACGCA 62.267 57.895 3.97 0.00 0.00 5.24
656 657 2.556840 AATGGTAGCCCTGCACGCAT 62.557 55.000 3.97 0.00 0.00 4.73
657 658 3.204827 GGTAGCCCTGCACGCATG 61.205 66.667 3.97 0.00 0.00 4.06
772 778 1.396607 AAAACCAAAGTGGCCGGGAC 61.397 55.000 2.18 0.00 42.67 4.46
787 797 1.448540 GGACGGATGACACTGGCTG 60.449 63.158 0.00 0.00 0.00 4.85
790 800 2.439156 GGATGACACTGGCTGGCC 60.439 66.667 4.43 4.43 0.00 5.36
792 802 1.303561 GATGACACTGGCTGGCCAA 60.304 57.895 15.47 0.55 46.63 4.52
793 803 1.589716 GATGACACTGGCTGGCCAAC 61.590 60.000 15.47 0.65 46.63 3.77
794 804 3.357079 GACACTGGCTGGCCAACG 61.357 66.667 15.47 11.28 46.63 4.10
795 805 4.189580 ACACTGGCTGGCCAACGT 62.190 61.111 15.47 11.89 46.63 3.99
907 969 1.734117 GCTTTGCATGACGCCAACC 60.734 57.895 0.00 0.00 41.33 3.77
976 1038 2.421424 CCTCCTAAAGCACTACGTACGT 59.579 50.000 25.98 25.98 0.00 3.57
980 1042 4.023279 TCCTAAAGCACTACGTACGTCAAA 60.023 41.667 26.53 6.69 0.00 2.69
1034 1108 1.449246 ACCGAGACGTACGAGGAGG 60.449 63.158 24.41 20.22 0.00 4.30
1055 1129 0.682855 AGGGAGAAGAGGCACGAGAG 60.683 60.000 0.00 0.00 0.00 3.20
1154 1231 2.711922 CGTAAGCTCCAGGTCGCCT 61.712 63.158 0.00 0.00 0.00 5.52
1379 3159 2.281208 CCCCGCGGTTCTTGTGAA 60.281 61.111 26.12 0.00 0.00 3.18
1402 3205 1.602237 CCGGGCAGAGCTTTTAGGA 59.398 57.895 0.00 0.00 0.00 2.94
1404 3207 0.462759 CGGGCAGAGCTTTTAGGAGG 60.463 60.000 0.00 0.00 0.00 4.30
1410 3213 0.824759 GAGCTTTTAGGAGGAGCCGA 59.175 55.000 0.00 0.00 43.43 5.54
1477 3286 1.003580 TGATTCCTGTCCTTGCTGTCC 59.996 52.381 0.00 0.00 0.00 4.02
1505 3314 2.574322 CGTTTGGACGCAAAATGAGAG 58.426 47.619 0.00 0.00 43.03 3.20
1539 3348 9.866655 ATGTAAAATCAGTATATGAATGGGTGT 57.133 29.630 0.00 0.00 42.53 4.16
1540 3349 9.693739 TGTAAAATCAGTATATGAATGGGTGTT 57.306 29.630 0.00 0.00 42.53 3.32
1562 3371 4.581868 TCTTCCCTTGTAATTAACCACCG 58.418 43.478 0.00 0.00 0.00 4.94
1569 3378 1.600485 GTAATTAACCACCGGCCATCG 59.400 52.381 0.00 0.00 38.88 3.84
1592 3405 8.578308 TCGATAAGTTTCTTCGTTTTTCTGTA 57.422 30.769 0.00 0.00 34.60 2.74
1594 3407 7.739043 CGATAAGTTTCTTCGTTTTTCTGTACC 59.261 37.037 0.00 0.00 0.00 3.34
1627 3440 2.475519 CGCATATGTTGTTCCCGTTGTC 60.476 50.000 4.29 0.00 0.00 3.18
1628 3441 2.486203 GCATATGTTGTTCCCGTTGTCA 59.514 45.455 4.29 0.00 0.00 3.58
1647 3460 9.055248 CGTTGTCATCTCAAATTTCTCAATAAC 57.945 33.333 0.00 0.00 0.00 1.89
1675 3499 7.007099 CGCTTTAAACAAATACTCATTCGAACC 59.993 37.037 0.00 0.00 0.00 3.62
1728 3554 8.378421 CGGTTCAAAAGTACTACTATAAAGTGC 58.622 37.037 0.00 0.00 36.36 4.40
1819 3650 0.955428 CTGGCCGCTGCTTCTACAAA 60.955 55.000 0.00 0.00 37.74 2.83
1942 3781 9.726438 ATGGTTTATGCTAGTTAATATGTCCTC 57.274 33.333 0.00 0.00 0.00 3.71
1944 3783 9.780186 GGTTTATGCTAGTTAATATGTCCTCTT 57.220 33.333 0.00 0.00 0.00 2.85
2060 4158 2.414161 GCATTTCAAAGAGTACCGTGCC 60.414 50.000 0.00 0.00 0.00 5.01
2061 4159 2.623878 TTTCAAAGAGTACCGTGCCA 57.376 45.000 0.00 0.00 0.00 4.92
2065 4163 3.093814 TCAAAGAGTACCGTGCCATAGA 58.906 45.455 0.00 0.00 0.00 1.98
2066 4164 3.512329 TCAAAGAGTACCGTGCCATAGAA 59.488 43.478 0.00 0.00 0.00 2.10
2067 4165 4.161565 TCAAAGAGTACCGTGCCATAGAAT 59.838 41.667 0.00 0.00 0.00 2.40
2068 4166 4.323553 AAGAGTACCGTGCCATAGAATC 57.676 45.455 0.00 0.00 0.00 2.52
2069 4167 3.296854 AGAGTACCGTGCCATAGAATCA 58.703 45.455 0.00 0.00 0.00 2.57
2070 4168 3.068307 AGAGTACCGTGCCATAGAATCAC 59.932 47.826 0.00 0.00 0.00 3.06
2071 4169 2.764010 AGTACCGTGCCATAGAATCACA 59.236 45.455 0.00 0.00 0.00 3.58
2072 4170 2.315925 ACCGTGCCATAGAATCACAG 57.684 50.000 0.00 0.00 0.00 3.66
2073 4171 1.134401 ACCGTGCCATAGAATCACAGG 60.134 52.381 0.00 0.00 33.71 4.00
2074 4172 1.586422 CGTGCCATAGAATCACAGGG 58.414 55.000 0.00 0.00 0.00 4.45
2075 4173 1.811558 CGTGCCATAGAATCACAGGGG 60.812 57.143 0.00 0.00 0.00 4.79
2076 4174 0.846015 TGCCATAGAATCACAGGGGG 59.154 55.000 0.00 0.00 0.00 5.40
2096 4194 3.092301 GGGAAATCAAACTCTTCAGGGG 58.908 50.000 0.00 0.00 0.00 4.79
2098 4196 3.245264 GGAAATCAAACTCTTCAGGGGGA 60.245 47.826 0.00 0.00 0.00 4.81
2101 4199 3.508845 TCAAACTCTTCAGGGGGAAAG 57.491 47.619 0.00 0.00 34.44 2.62
2106 4204 1.198759 TCTTCAGGGGGAAAGACCGG 61.199 60.000 0.00 0.00 40.11 5.28
2114 4212 1.342672 GGGAAAGACCGGCCCATAGA 61.343 60.000 0.00 0.00 41.64 1.98
2132 4230 3.383620 AGAATCACATCTCAGATCGCC 57.616 47.619 0.00 0.00 0.00 5.54
2138 4236 2.099756 CACATCTCAGATCGCCACAGTA 59.900 50.000 0.00 0.00 0.00 2.74
2140 4238 0.733150 TCTCAGATCGCCACAGTACG 59.267 55.000 0.00 0.00 0.00 3.67
2150 4248 1.134521 GCCACAGTACGGGATCAATCA 60.135 52.381 5.58 0.00 0.00 2.57
2175 4273 1.938657 ATCCTCGAGAGCACACCACG 61.939 60.000 15.71 0.00 0.00 4.94
2193 4291 2.855963 CACGTAAATAGGACGCGAACAT 59.144 45.455 15.93 6.80 44.14 2.71
2201 4299 1.006832 GGACGCGAACATGTTAGCAT 58.993 50.000 33.32 24.61 40.49 3.79
2218 4347 2.099921 AGCATGTCACGGATAGTCTGAC 59.900 50.000 0.00 0.00 0.00 3.51
2293 4458 2.128771 ACCAAGGGTCATGTGTATGC 57.871 50.000 0.00 0.00 34.21 3.14
2306 4471 2.165437 TGTGTATGCATGAGCGTCTACA 59.835 45.455 10.16 0.00 46.23 2.74
2332 4514 2.818432 ACTCTACACAGGTTCCACTACG 59.182 50.000 0.00 0.00 0.00 3.51
2349 4531 4.919168 CACTACGAAACTACGATCAAACCA 59.081 41.667 0.00 0.00 37.03 3.67
2425 4607 3.366396 ACCTAATCTGTGGACTCGATGT 58.634 45.455 0.00 0.00 0.00 3.06
2436 4618 0.976641 ACTCGATGTTTCCTCCAGCA 59.023 50.000 0.00 0.00 0.00 4.41
2499 4681 4.348168 ACAGAAGGGTATCAGTCAAACACT 59.652 41.667 0.00 0.00 34.67 3.55
2519 4701 6.662616 ACACTCATGAGAAATTGAAACTTCG 58.337 36.000 29.27 0.00 0.00 3.79
2610 4794 1.134098 GGGGAGGCGAATGAGAAATGA 60.134 52.381 0.00 0.00 0.00 2.57
2660 4844 7.330454 AGCTTCTGCAAGATATATATGTTGTCG 59.670 37.037 25.30 18.64 46.36 4.35
2711 4897 1.227674 TATGTGTGCGTGTGGTGCA 60.228 52.632 0.00 0.00 40.70 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.929049 TCGTTGTCAGATGGGATAATGATAAC 59.071 38.462 0.00 0.00 39.18 1.89
1 2 7.061566 TCGTTGTCAGATGGGATAATGATAA 57.938 36.000 0.00 0.00 31.56 1.75
2 3 6.295292 CCTCGTTGTCAGATGGGATAATGATA 60.295 42.308 0.00 0.00 34.69 2.15
3 4 5.512060 CCTCGTTGTCAGATGGGATAATGAT 60.512 44.000 0.00 0.00 34.69 2.45
4 5 4.202253 CCTCGTTGTCAGATGGGATAATGA 60.202 45.833 0.00 0.00 34.24 2.57
5 6 4.060900 CCTCGTTGTCAGATGGGATAATG 58.939 47.826 0.00 0.00 0.00 1.90
6 7 3.711704 ACCTCGTTGTCAGATGGGATAAT 59.288 43.478 0.00 0.00 0.00 1.28
7 8 3.104512 ACCTCGTTGTCAGATGGGATAA 58.895 45.455 0.00 0.00 0.00 1.75
8 9 2.693591 GACCTCGTTGTCAGATGGGATA 59.306 50.000 2.86 0.00 35.29 2.59
9 10 1.482593 GACCTCGTTGTCAGATGGGAT 59.517 52.381 2.86 0.00 35.29 3.85
10 11 0.895530 GACCTCGTTGTCAGATGGGA 59.104 55.000 2.86 0.00 35.29 4.37
11 12 0.458543 CGACCTCGTTGTCAGATGGG 60.459 60.000 7.61 0.00 34.88 4.00
12 13 0.526211 TCGACCTCGTTGTCAGATGG 59.474 55.000 7.61 0.00 40.80 3.51
13 14 2.254459 CTTCGACCTCGTTGTCAGATG 58.746 52.381 7.61 5.02 40.80 2.90
14 15 1.202582 CCTTCGACCTCGTTGTCAGAT 59.797 52.381 7.61 0.00 40.80 2.90
15 16 0.596577 CCTTCGACCTCGTTGTCAGA 59.403 55.000 7.61 3.82 40.80 3.27
16 17 1.009389 GCCTTCGACCTCGTTGTCAG 61.009 60.000 7.61 0.00 40.80 3.51
17 18 1.006571 GCCTTCGACCTCGTTGTCA 60.007 57.895 7.61 0.00 40.80 3.58
18 19 2.087009 CGCCTTCGACCTCGTTGTC 61.087 63.158 0.00 0.00 40.80 3.18
19 20 2.049433 CGCCTTCGACCTCGTTGT 60.049 61.111 0.00 0.00 40.80 3.32
20 21 2.809601 CCGCCTTCGACCTCGTTG 60.810 66.667 0.00 0.00 40.80 4.10
21 22 4.736896 GCCGCCTTCGACCTCGTT 62.737 66.667 0.00 0.00 40.80 3.85
24 25 4.856607 CTCGCCGCCTTCGACCTC 62.857 72.222 0.00 0.00 38.10 3.85
27 28 2.734756 CTATCCTCGCCGCCTTCGAC 62.735 65.000 0.00 0.00 38.10 4.20
28 29 2.517638 TATCCTCGCCGCCTTCGA 60.518 61.111 0.00 0.00 38.10 3.71
29 30 2.049985 CTATCCTCGCCGCCTTCG 60.050 66.667 0.00 0.00 0.00 3.79
30 31 2.356433 GCTATCCTCGCCGCCTTC 60.356 66.667 0.00 0.00 0.00 3.46
31 32 4.286320 CGCTATCCTCGCCGCCTT 62.286 66.667 0.00 0.00 0.00 4.35
36 37 4.708968 CTCGCCGCTATCCTCGCC 62.709 72.222 0.00 0.00 0.00 5.54
37 38 4.708968 CCTCGCCGCTATCCTCGC 62.709 72.222 0.00 0.00 0.00 5.03
38 39 3.288290 ACCTCGCCGCTATCCTCG 61.288 66.667 0.00 0.00 0.00 4.63
39 40 2.336809 CACCTCGCCGCTATCCTC 59.663 66.667 0.00 0.00 0.00 3.71
40 41 3.227276 CCACCTCGCCGCTATCCT 61.227 66.667 0.00 0.00 0.00 3.24
41 42 4.301027 CCCACCTCGCCGCTATCC 62.301 72.222 0.00 0.00 0.00 2.59
42 43 3.537874 ACCCACCTCGCCGCTATC 61.538 66.667 0.00 0.00 0.00 2.08
43 44 3.849951 CACCCACCTCGCCGCTAT 61.850 66.667 0.00 0.00 0.00 2.97
50 51 3.094062 ATCATCGCCACCCACCTCG 62.094 63.158 0.00 0.00 0.00 4.63
51 52 1.524621 CATCATCGCCACCCACCTC 60.525 63.158 0.00 0.00 0.00 3.85
52 53 1.976132 CTCATCATCGCCACCCACCT 61.976 60.000 0.00 0.00 0.00 4.00
53 54 1.524621 CTCATCATCGCCACCCACC 60.525 63.158 0.00 0.00 0.00 4.61
54 55 1.524621 CCTCATCATCGCCACCCAC 60.525 63.158 0.00 0.00 0.00 4.61
55 56 1.688884 TCCTCATCATCGCCACCCA 60.689 57.895 0.00 0.00 0.00 4.51
56 57 1.070445 CTCCTCATCATCGCCACCC 59.930 63.158 0.00 0.00 0.00 4.61
57 58 0.683973 ATCTCCTCATCATCGCCACC 59.316 55.000 0.00 0.00 0.00 4.61
58 59 2.141517 CAATCTCCTCATCATCGCCAC 58.858 52.381 0.00 0.00 0.00 5.01
59 60 2.041701 TCAATCTCCTCATCATCGCCA 58.958 47.619 0.00 0.00 0.00 5.69
60 61 2.224137 TGTCAATCTCCTCATCATCGCC 60.224 50.000 0.00 0.00 0.00 5.54
61 62 3.103447 TGTCAATCTCCTCATCATCGC 57.897 47.619 0.00 0.00 0.00 4.58
62 63 3.919197 CGATGTCAATCTCCTCATCATCG 59.081 47.826 9.52 9.52 43.80 3.84
63 64 5.131594 TCGATGTCAATCTCCTCATCATC 57.868 43.478 0.00 0.00 37.21 2.92
64 65 5.303845 TCTTCGATGTCAATCTCCTCATCAT 59.696 40.000 0.00 0.00 37.21 2.45
65 66 4.646492 TCTTCGATGTCAATCTCCTCATCA 59.354 41.667 0.00 0.00 37.21 3.07
66 67 5.193663 TCTTCGATGTCAATCTCCTCATC 57.806 43.478 0.00 0.00 34.98 2.92
67 68 4.648762 ACTCTTCGATGTCAATCTCCTCAT 59.351 41.667 0.00 0.00 0.00 2.90
68 69 4.019858 ACTCTTCGATGTCAATCTCCTCA 58.980 43.478 0.00 0.00 0.00 3.86
69 70 4.358851 CACTCTTCGATGTCAATCTCCTC 58.641 47.826 0.00 0.00 0.00 3.71
70 71 3.430098 GCACTCTTCGATGTCAATCTCCT 60.430 47.826 0.00 0.00 0.00 3.69
71 72 2.863137 GCACTCTTCGATGTCAATCTCC 59.137 50.000 0.00 0.00 0.00 3.71
72 73 3.515630 TGCACTCTTCGATGTCAATCTC 58.484 45.455 0.00 0.00 0.00 2.75
73 74 3.519579 CTGCACTCTTCGATGTCAATCT 58.480 45.455 0.00 0.00 0.00 2.40
74 75 2.606725 CCTGCACTCTTCGATGTCAATC 59.393 50.000 0.00 0.00 0.00 2.67
75 76 2.234661 TCCTGCACTCTTCGATGTCAAT 59.765 45.455 0.00 0.00 0.00 2.57
76 77 1.618343 TCCTGCACTCTTCGATGTCAA 59.382 47.619 0.00 0.00 0.00 3.18
77 78 1.203287 CTCCTGCACTCTTCGATGTCA 59.797 52.381 0.00 0.00 0.00 3.58
78 79 1.203523 ACTCCTGCACTCTTCGATGTC 59.796 52.381 0.00 0.00 0.00 3.06
79 80 1.067283 CACTCCTGCACTCTTCGATGT 60.067 52.381 0.00 0.00 0.00 3.06
80 81 1.067283 ACACTCCTGCACTCTTCGATG 60.067 52.381 0.00 0.00 0.00 3.84
81 82 1.203523 GACACTCCTGCACTCTTCGAT 59.796 52.381 0.00 0.00 0.00 3.59
82 83 0.598562 GACACTCCTGCACTCTTCGA 59.401 55.000 0.00 0.00 0.00 3.71
83 84 0.600557 AGACACTCCTGCACTCTTCG 59.399 55.000 0.00 0.00 0.00 3.79
84 85 2.611722 GGAAGACACTCCTGCACTCTTC 60.612 54.545 0.00 0.00 37.29 2.87
85 86 1.346068 GGAAGACACTCCTGCACTCTT 59.654 52.381 0.00 0.00 32.21 2.85
86 87 0.972883 GGAAGACACTCCTGCACTCT 59.027 55.000 0.00 0.00 32.21 3.24
87 88 0.036858 GGGAAGACACTCCTGCACTC 60.037 60.000 0.00 0.00 35.63 3.51
88 89 1.484444 GGGGAAGACACTCCTGCACT 61.484 60.000 0.00 0.00 35.63 4.40
89 90 1.003233 GGGGAAGACACTCCTGCAC 60.003 63.158 0.00 0.00 35.63 4.57
90 91 1.059584 TTGGGGAAGACACTCCTGCA 61.060 55.000 0.00 0.00 35.63 4.41
91 92 0.606673 GTTGGGGAAGACACTCCTGC 60.607 60.000 0.00 0.00 35.63 4.85
92 93 0.320771 CGTTGGGGAAGACACTCCTG 60.321 60.000 0.00 0.00 35.63 3.86
93 94 0.471211 TCGTTGGGGAAGACACTCCT 60.471 55.000 0.00 0.00 35.63 3.69
94 95 0.320508 GTCGTTGGGGAAGACACTCC 60.321 60.000 0.00 0.00 36.84 3.85
95 96 0.320508 GGTCGTTGGGGAAGACACTC 60.321 60.000 0.00 0.00 38.34 3.51
96 97 1.752833 GGTCGTTGGGGAAGACACT 59.247 57.895 0.00 0.00 38.34 3.55
97 98 1.302271 GGGTCGTTGGGGAAGACAC 60.302 63.158 0.00 0.00 38.34 3.67
98 99 2.522367 GGGGTCGTTGGGGAAGACA 61.522 63.158 0.00 0.00 38.34 3.41
99 100 2.350134 GGGGTCGTTGGGGAAGAC 59.650 66.667 0.00 0.00 36.21 3.01
100 101 3.315949 CGGGGTCGTTGGGGAAGA 61.316 66.667 0.00 0.00 0.00 2.87
101 102 4.404098 CCGGGGTCGTTGGGGAAG 62.404 72.222 0.00 0.00 33.95 3.46
155 156 2.159085 CCAATCCTTCCTCGTCAGGTAC 60.159 54.545 0.00 0.00 41.28 3.34
156 157 2.108168 CCAATCCTTCCTCGTCAGGTA 58.892 52.381 0.00 0.00 41.28 3.08
157 158 0.905357 CCAATCCTTCCTCGTCAGGT 59.095 55.000 0.00 0.00 41.28 4.00
158 159 0.462759 GCCAATCCTTCCTCGTCAGG 60.463 60.000 0.00 0.00 42.01 3.86
159 160 0.539051 AGCCAATCCTTCCTCGTCAG 59.461 55.000 0.00 0.00 0.00 3.51
160 161 0.537188 GAGCCAATCCTTCCTCGTCA 59.463 55.000 0.00 0.00 0.00 4.35
161 162 0.528684 CGAGCCAATCCTTCCTCGTC 60.529 60.000 0.00 0.00 41.47 4.20
162 163 0.970937 TCGAGCCAATCCTTCCTCGT 60.971 55.000 8.48 0.00 45.27 4.18
163 164 0.528684 GTCGAGCCAATCCTTCCTCG 60.529 60.000 2.78 2.78 46.11 4.63
164 165 0.179070 GGTCGAGCCAATCCTTCCTC 60.179 60.000 2.39 0.00 37.17 3.71
165 166 0.618968 AGGTCGAGCCAATCCTTCCT 60.619 55.000 11.73 0.00 40.61 3.36
166 167 0.179070 GAGGTCGAGCCAATCCTTCC 60.179 60.000 11.73 0.00 40.61 3.46
167 168 0.179070 GGAGGTCGAGCCAATCCTTC 60.179 60.000 11.73 0.00 40.61 3.46
168 169 0.909610 TGGAGGTCGAGCCAATCCTT 60.910 55.000 18.68 0.00 40.61 3.36
169 170 1.306141 TGGAGGTCGAGCCAATCCT 60.306 57.895 18.68 6.35 40.61 3.24
170 171 1.153349 GTGGAGGTCGAGCCAATCC 60.153 63.158 11.73 12.47 40.61 3.01
171 172 0.250513 AAGTGGAGGTCGAGCCAATC 59.749 55.000 11.73 2.14 40.61 2.67
172 173 0.250513 GAAGTGGAGGTCGAGCCAAT 59.749 55.000 11.73 3.41 40.61 3.16
173 174 1.671742 GAAGTGGAGGTCGAGCCAA 59.328 57.895 11.73 0.00 40.61 4.52
174 175 2.636412 CGAAGTGGAGGTCGAGCCA 61.636 63.158 11.73 4.11 39.64 4.75
175 176 2.182030 CGAAGTGGAGGTCGAGCC 59.818 66.667 11.73 3.31 39.64 4.70
176 177 1.153997 GTCGAAGTGGAGGTCGAGC 60.154 63.158 6.48 6.48 46.18 5.03
177 178 1.507174 GGTCGAAGTGGAGGTCGAG 59.493 63.158 0.00 0.00 46.18 4.04
178 179 2.330372 CGGTCGAAGTGGAGGTCGA 61.330 63.158 0.00 0.00 43.61 4.20
179 180 2.178521 CGGTCGAAGTGGAGGTCG 59.821 66.667 0.00 0.00 38.62 4.79
180 181 1.530013 TTCCGGTCGAAGTGGAGGTC 61.530 60.000 0.00 0.00 32.39 3.85
181 182 1.532316 TTCCGGTCGAAGTGGAGGT 60.532 57.895 0.00 0.00 32.39 3.85
182 183 1.215647 CTTCCGGTCGAAGTGGAGG 59.784 63.158 0.00 0.00 42.74 4.30
183 184 4.891566 CTTCCGGTCGAAGTGGAG 57.108 61.111 0.00 0.00 42.74 3.86
189 190 4.549458 CAACTAAACTACTTCCGGTCGAA 58.451 43.478 0.00 0.00 0.00 3.71
190 191 3.612479 GCAACTAAACTACTTCCGGTCGA 60.612 47.826 0.00 0.00 0.00 4.20
191 192 2.665052 GCAACTAAACTACTTCCGGTCG 59.335 50.000 0.00 0.00 0.00 4.79
192 193 3.922910 AGCAACTAAACTACTTCCGGTC 58.077 45.455 0.00 0.00 0.00 4.79
193 194 4.347360 AAGCAACTAAACTACTTCCGGT 57.653 40.909 0.00 0.00 0.00 5.28
194 195 5.684550 AAAAGCAACTAAACTACTTCCGG 57.315 39.130 0.00 0.00 0.00 5.14
195 196 7.417496 ACTAAAAGCAACTAAACTACTTCCG 57.583 36.000 0.00 0.00 0.00 4.30
226 227 9.303537 GCACAACCAAACTAAAACATAAAGTTA 57.696 29.630 0.00 0.00 40.26 2.24
227 228 7.819900 TGCACAACCAAACTAAAACATAAAGTT 59.180 29.630 0.00 0.00 43.89 2.66
228 229 7.324178 TGCACAACCAAACTAAAACATAAAGT 58.676 30.769 0.00 0.00 0.00 2.66
229 230 7.763172 TGCACAACCAAACTAAAACATAAAG 57.237 32.000 0.00 0.00 0.00 1.85
230 231 8.547967 TTTGCACAACCAAACTAAAACATAAA 57.452 26.923 0.00 0.00 30.28 1.40
231 232 8.547967 TTTTGCACAACCAAACTAAAACATAA 57.452 26.923 0.00 0.00 34.68 1.90
232 233 8.443937 GTTTTTGCACAACCAAACTAAAACATA 58.556 29.630 9.86 0.00 37.54 2.29
233 234 7.174080 AGTTTTTGCACAACCAAACTAAAACAT 59.826 29.630 14.81 2.52 38.96 2.71
234 235 6.483640 AGTTTTTGCACAACCAAACTAAAACA 59.516 30.769 14.81 0.00 38.96 2.83
235 236 6.893759 AGTTTTTGCACAACCAAACTAAAAC 58.106 32.000 10.13 7.60 37.63 2.43
236 237 8.779354 ATAGTTTTTGCACAACCAAACTAAAA 57.221 26.923 17.67 5.07 42.25 1.52
237 238 8.254508 AGATAGTTTTTGCACAACCAAACTAAA 58.745 29.630 17.67 5.58 42.25 1.85
238 239 7.777095 AGATAGTTTTTGCACAACCAAACTAA 58.223 30.769 17.67 7.69 42.25 2.24
239 240 7.341445 AGATAGTTTTTGCACAACCAAACTA 57.659 32.000 16.72 16.72 42.82 2.24
240 241 6.220726 AGATAGTTTTTGCACAACCAAACT 57.779 33.333 14.35 14.35 41.33 2.66
241 242 6.141685 CGTAGATAGTTTTTGCACAACCAAAC 59.858 38.462 4.62 3.54 34.68 2.93
242 243 6.183360 ACGTAGATAGTTTTTGCACAACCAAA 60.183 34.615 4.62 0.00 33.21 3.28
243 244 5.297278 ACGTAGATAGTTTTTGCACAACCAA 59.703 36.000 4.62 0.00 0.00 3.67
244 245 4.817464 ACGTAGATAGTTTTTGCACAACCA 59.183 37.500 4.62 0.00 0.00 3.67
245 246 5.352643 ACGTAGATAGTTTTTGCACAACC 57.647 39.130 4.62 0.00 0.00 3.77
246 247 8.837059 CATAAACGTAGATAGTTTTTGCACAAC 58.163 33.333 0.00 0.00 41.44 3.32
247 248 8.561212 ACATAAACGTAGATAGTTTTTGCACAA 58.439 29.630 10.53 0.00 41.15 3.33
248 249 8.090250 ACATAAACGTAGATAGTTTTTGCACA 57.910 30.769 10.53 0.00 41.15 4.57
249 250 8.944212 AACATAAACGTAGATAGTTTTTGCAC 57.056 30.769 10.53 0.00 41.15 4.57
250 251 9.388346 CAAACATAAACGTAGATAGTTTTTGCA 57.612 29.630 10.53 0.00 41.15 4.08
251 252 9.601971 TCAAACATAAACGTAGATAGTTTTTGC 57.398 29.630 10.53 0.00 41.15 3.68
255 256 9.769093 GCATTCAAACATAAACGTAGATAGTTT 57.231 29.630 0.00 0.00 43.34 2.66
256 257 8.941977 TGCATTCAAACATAAACGTAGATAGTT 58.058 29.630 0.00 0.00 0.00 2.24
257 258 8.487313 TGCATTCAAACATAAACGTAGATAGT 57.513 30.769 0.00 0.00 0.00 2.12
258 259 9.373750 CATGCATTCAAACATAAACGTAGATAG 57.626 33.333 0.00 0.00 0.00 2.08
259 260 8.888716 ACATGCATTCAAACATAAACGTAGATA 58.111 29.630 0.00 0.00 0.00 1.98
260 261 7.761409 ACATGCATTCAAACATAAACGTAGAT 58.239 30.769 0.00 0.00 0.00 1.98
261 262 7.139896 ACATGCATTCAAACATAAACGTAGA 57.860 32.000 0.00 0.00 0.00 2.59
262 263 7.795431 AACATGCATTCAAACATAAACGTAG 57.205 32.000 0.00 0.00 0.00 3.51
263 264 8.508062 AGTAACATGCATTCAAACATAAACGTA 58.492 29.630 0.00 0.00 0.00 3.57
264 265 7.367285 AGTAACATGCATTCAAACATAAACGT 58.633 30.769 0.00 0.00 0.00 3.99
265 266 7.795431 AGTAACATGCATTCAAACATAAACG 57.205 32.000 0.00 0.00 0.00 3.60
268 269 8.986847 CCAAAAGTAACATGCATTCAAACATAA 58.013 29.630 0.00 0.00 0.00 1.90
269 270 8.147058 ACCAAAAGTAACATGCATTCAAACATA 58.853 29.630 0.00 0.00 0.00 2.29
270 271 6.991531 ACCAAAAGTAACATGCATTCAAACAT 59.008 30.769 0.00 0.00 0.00 2.71
271 272 6.344500 ACCAAAAGTAACATGCATTCAAACA 58.656 32.000 0.00 0.00 0.00 2.83
272 273 6.843069 ACCAAAAGTAACATGCATTCAAAC 57.157 33.333 0.00 0.00 0.00 2.93
273 274 7.044181 TGAACCAAAAGTAACATGCATTCAAA 58.956 30.769 0.00 0.00 0.00 2.69
274 275 6.577103 TGAACCAAAAGTAACATGCATTCAA 58.423 32.000 0.00 0.00 0.00 2.69
275 276 6.154203 TGAACCAAAAGTAACATGCATTCA 57.846 33.333 0.00 0.00 0.00 2.57
276 277 7.475771 TTTGAACCAAAAGTAACATGCATTC 57.524 32.000 0.00 0.00 29.89 2.67
277 278 8.344098 CAATTTGAACCAAAAGTAACATGCATT 58.656 29.630 0.00 0.00 36.90 3.56
278 279 7.520292 GCAATTTGAACCAAAAGTAACATGCAT 60.520 33.333 0.00 0.00 36.90 3.96
279 280 6.238320 GCAATTTGAACCAAAAGTAACATGCA 60.238 34.615 0.00 0.00 36.90 3.96
280 281 6.018016 AGCAATTTGAACCAAAAGTAACATGC 60.018 34.615 0.00 0.00 36.90 4.06
281 282 7.481275 AGCAATTTGAACCAAAAGTAACATG 57.519 32.000 0.00 0.00 36.90 3.21
282 283 8.397148 CAAAGCAATTTGAACCAAAAGTAACAT 58.603 29.630 0.00 0.00 36.90 2.71
283 284 7.604164 TCAAAGCAATTTGAACCAAAAGTAACA 59.396 29.630 0.00 0.00 37.93 2.41
284 285 7.969314 TCAAAGCAATTTGAACCAAAAGTAAC 58.031 30.769 0.00 0.00 37.93 2.50
285 286 8.553459 TTCAAAGCAATTTGAACCAAAAGTAA 57.447 26.923 11.11 0.00 43.58 2.24
295 296 6.660887 GAACCAAGTTCAAAGCAATTTGAA 57.339 33.333 11.11 11.11 45.48 2.69
308 309 6.635030 ACTCCACTAATTTGAACCAAGTTC 57.365 37.500 0.47 0.47 42.26 3.01
309 310 9.975218 ATATACTCCACTAATTTGAACCAAGTT 57.025 29.630 0.00 0.00 0.00 2.66
333 334 9.275572 AGCCGATCCCCTAAAAATTAGTATATA 57.724 33.333 0.00 0.00 0.00 0.86
334 335 8.159229 AGCCGATCCCCTAAAAATTAGTATAT 57.841 34.615 0.00 0.00 0.00 0.86
335 336 7.563724 AGCCGATCCCCTAAAAATTAGTATA 57.436 36.000 0.00 0.00 0.00 1.47
336 337 6.449830 AGCCGATCCCCTAAAAATTAGTAT 57.550 37.500 0.00 0.00 0.00 2.12
337 338 5.899631 AGCCGATCCCCTAAAAATTAGTA 57.100 39.130 0.00 0.00 0.00 1.82
338 339 4.790718 AGCCGATCCCCTAAAAATTAGT 57.209 40.909 0.00 0.00 0.00 2.24
339 340 6.014499 TCTCTAGCCGATCCCCTAAAAATTAG 60.014 42.308 0.00 0.00 0.00 1.73
340 341 5.842328 TCTCTAGCCGATCCCCTAAAAATTA 59.158 40.000 0.00 0.00 0.00 1.40
341 342 4.658901 TCTCTAGCCGATCCCCTAAAAATT 59.341 41.667 0.00 0.00 0.00 1.82
342 343 4.232091 TCTCTAGCCGATCCCCTAAAAAT 58.768 43.478 0.00 0.00 0.00 1.82
343 344 3.649843 TCTCTAGCCGATCCCCTAAAAA 58.350 45.455 0.00 0.00 0.00 1.94
344 345 3.323774 TCTCTAGCCGATCCCCTAAAA 57.676 47.619 0.00 0.00 0.00 1.52
345 346 3.165875 CATCTCTAGCCGATCCCCTAAA 58.834 50.000 0.00 0.00 0.00 1.85
346 347 2.808919 CATCTCTAGCCGATCCCCTAA 58.191 52.381 0.00 0.00 0.00 2.69
347 348 1.617263 GCATCTCTAGCCGATCCCCTA 60.617 57.143 0.00 0.00 0.00 3.53
348 349 0.902516 GCATCTCTAGCCGATCCCCT 60.903 60.000 0.00 0.00 0.00 4.79
349 350 1.594310 GCATCTCTAGCCGATCCCC 59.406 63.158 0.00 0.00 0.00 4.81
350 351 1.594310 GGCATCTCTAGCCGATCCC 59.406 63.158 0.00 0.00 43.15 3.85
357 358 1.967066 TGCTCTAAGGGCATCTCTAGC 59.033 52.381 0.00 0.00 34.56 3.42
358 359 2.029110 GCTGCTCTAAGGGCATCTCTAG 60.029 54.545 0.00 0.00 39.07 2.43
359 360 1.967066 GCTGCTCTAAGGGCATCTCTA 59.033 52.381 0.00 0.00 39.07 2.43
360 361 0.758123 GCTGCTCTAAGGGCATCTCT 59.242 55.000 0.00 0.00 39.07 3.10
361 362 0.467384 TGCTGCTCTAAGGGCATCTC 59.533 55.000 0.00 0.00 39.07 2.75
362 363 0.914644 TTGCTGCTCTAAGGGCATCT 59.085 50.000 0.00 0.00 39.07 2.90
363 364 1.878734 GATTGCTGCTCTAAGGGCATC 59.121 52.381 0.00 0.00 39.07 3.91
364 365 1.213678 TGATTGCTGCTCTAAGGGCAT 59.786 47.619 0.00 0.00 39.07 4.40
365 366 0.620030 TGATTGCTGCTCTAAGGGCA 59.380 50.000 0.00 0.00 38.10 5.36
366 367 1.755179 TTGATTGCTGCTCTAAGGGC 58.245 50.000 0.00 0.00 0.00 5.19
367 368 3.501445 GCTATTGATTGCTGCTCTAAGGG 59.499 47.826 0.00 0.00 0.00 3.95
368 369 3.501445 GGCTATTGATTGCTGCTCTAAGG 59.499 47.826 0.00 0.00 0.00 2.69
369 370 4.132336 TGGCTATTGATTGCTGCTCTAAG 58.868 43.478 0.00 0.00 0.00 2.18
370 371 4.155063 TGGCTATTGATTGCTGCTCTAA 57.845 40.909 0.00 0.00 0.00 2.10
371 372 3.843893 TGGCTATTGATTGCTGCTCTA 57.156 42.857 0.00 0.00 0.00 2.43
372 373 2.723322 TGGCTATTGATTGCTGCTCT 57.277 45.000 0.00 0.00 0.00 4.09
373 374 3.788333 TTTGGCTATTGATTGCTGCTC 57.212 42.857 0.00 0.00 0.00 4.26
374 375 4.540359 TTTTTGGCTATTGATTGCTGCT 57.460 36.364 0.00 0.00 0.00 4.24
392 393 9.554395 AAATTAAATTTGGGTCAGTCGATTTTT 57.446 25.926 0.00 0.00 0.00 1.94
393 394 9.554395 AAAATTAAATTTGGGTCAGTCGATTTT 57.446 25.926 0.00 0.00 31.77 1.82
394 395 9.203421 GAAAATTAAATTTGGGTCAGTCGATTT 57.797 29.630 0.00 0.00 31.77 2.17
395 396 8.364142 TGAAAATTAAATTTGGGTCAGTCGATT 58.636 29.630 0.00 0.00 31.77 3.34
396 397 7.891561 TGAAAATTAAATTTGGGTCAGTCGAT 58.108 30.769 0.00 0.00 31.77 3.59
397 398 7.278461 TGAAAATTAAATTTGGGTCAGTCGA 57.722 32.000 0.00 0.00 31.77 4.20
398 399 7.359181 GCTTGAAAATTAAATTTGGGTCAGTCG 60.359 37.037 0.00 0.00 31.77 4.18
399 400 7.359181 CGCTTGAAAATTAAATTTGGGTCAGTC 60.359 37.037 0.00 0.00 31.77 3.51
400 401 6.423604 CGCTTGAAAATTAAATTTGGGTCAGT 59.576 34.615 0.00 0.00 31.77 3.41
401 402 6.644592 TCGCTTGAAAATTAAATTTGGGTCAG 59.355 34.615 0.00 0.00 31.77 3.51
402 403 6.422400 GTCGCTTGAAAATTAAATTTGGGTCA 59.578 34.615 0.00 0.00 31.77 4.02
403 404 6.645003 AGTCGCTTGAAAATTAAATTTGGGTC 59.355 34.615 0.00 0.00 31.77 4.46
404 405 6.521162 AGTCGCTTGAAAATTAAATTTGGGT 58.479 32.000 0.00 0.00 31.77 4.51
405 406 7.420184 AAGTCGCTTGAAAATTAAATTTGGG 57.580 32.000 0.00 0.00 31.77 4.12
407 408 9.871359 CGATAAGTCGCTTGAAAATTAAATTTG 57.129 29.630 0.00 0.00 41.49 2.32
429 430 9.901172 TCCTATCATCACTTTAGCTATACGATA 57.099 33.333 0.00 0.00 0.00 2.92
430 431 8.809468 TCCTATCATCACTTTAGCTATACGAT 57.191 34.615 0.00 0.00 0.00 3.73
431 432 8.631480 TTCCTATCATCACTTTAGCTATACGA 57.369 34.615 0.00 0.00 0.00 3.43
432 433 9.692749 TTTTCCTATCATCACTTTAGCTATACG 57.307 33.333 0.00 0.00 0.00 3.06
437 438 9.520515 TTTTCTTTTCCTATCATCACTTTAGCT 57.479 29.630 0.00 0.00 0.00 3.32
443 444 9.690913 TCATCATTTTCTTTTCCTATCATCACT 57.309 29.630 0.00 0.00 0.00 3.41
444 445 9.947669 CTCATCATTTTCTTTTCCTATCATCAC 57.052 33.333 0.00 0.00 0.00 3.06
445 446 9.128404 CCTCATCATTTTCTTTTCCTATCATCA 57.872 33.333 0.00 0.00 0.00 3.07
446 447 8.574737 CCCTCATCATTTTCTTTTCCTATCATC 58.425 37.037 0.00 0.00 0.00 2.92
447 448 8.284435 TCCCTCATCATTTTCTTTTCCTATCAT 58.716 33.333 0.00 0.00 0.00 2.45
448 449 7.642186 TCCCTCATCATTTTCTTTTCCTATCA 58.358 34.615 0.00 0.00 0.00 2.15
449 450 8.525290 TTCCCTCATCATTTTCTTTTCCTATC 57.475 34.615 0.00 0.00 0.00 2.08
450 451 8.339247 TCTTCCCTCATCATTTTCTTTTCCTAT 58.661 33.333 0.00 0.00 0.00 2.57
451 452 7.698912 TCTTCCCTCATCATTTTCTTTTCCTA 58.301 34.615 0.00 0.00 0.00 2.94
452 453 6.555711 TCTTCCCTCATCATTTTCTTTTCCT 58.444 36.000 0.00 0.00 0.00 3.36
453 454 6.840780 TCTTCCCTCATCATTTTCTTTTCC 57.159 37.500 0.00 0.00 0.00 3.13
454 455 9.962783 CATATCTTCCCTCATCATTTTCTTTTC 57.037 33.333 0.00 0.00 0.00 2.29
455 456 8.419442 GCATATCTTCCCTCATCATTTTCTTTT 58.581 33.333 0.00 0.00 0.00 2.27
456 457 7.015001 GGCATATCTTCCCTCATCATTTTCTTT 59.985 37.037 0.00 0.00 0.00 2.52
457 458 6.492772 GGCATATCTTCCCTCATCATTTTCTT 59.507 38.462 0.00 0.00 0.00 2.52
458 459 6.008960 GGCATATCTTCCCTCATCATTTTCT 58.991 40.000 0.00 0.00 0.00 2.52
459 460 5.184671 GGGCATATCTTCCCTCATCATTTTC 59.815 44.000 0.00 0.00 39.46 2.29
460 461 5.082425 GGGCATATCTTCCCTCATCATTTT 58.918 41.667 0.00 0.00 39.46 1.82
461 462 4.670765 GGGCATATCTTCCCTCATCATTT 58.329 43.478 0.00 0.00 39.46 2.32
462 463 4.313020 GGGCATATCTTCCCTCATCATT 57.687 45.455 0.00 0.00 39.46 2.57
472 473 2.158813 TCCAACGGAAGGGCATATCTTC 60.159 50.000 0.00 0.00 39.73 2.87
473 474 1.843851 TCCAACGGAAGGGCATATCTT 59.156 47.619 0.00 0.00 0.00 2.40
474 475 1.507140 TCCAACGGAAGGGCATATCT 58.493 50.000 0.00 0.00 0.00 1.98
475 476 2.427506 GATCCAACGGAAGGGCATATC 58.572 52.381 0.00 0.00 34.34 1.63
476 477 1.073923 GGATCCAACGGAAGGGCATAT 59.926 52.381 6.95 0.00 34.34 1.78
477 478 0.472471 GGATCCAACGGAAGGGCATA 59.528 55.000 6.95 0.00 34.34 3.14
478 479 1.227383 GGATCCAACGGAAGGGCAT 59.773 57.895 6.95 0.00 34.34 4.40
479 480 1.570857 ATGGATCCAACGGAAGGGCA 61.571 55.000 20.67 0.00 34.34 5.36
480 481 0.395724 AATGGATCCAACGGAAGGGC 60.396 55.000 20.67 0.00 34.34 5.19
481 482 2.143876 AAATGGATCCAACGGAAGGG 57.856 50.000 20.67 0.00 34.34 3.95
482 483 4.275936 GTCATAAATGGATCCAACGGAAGG 59.724 45.833 20.67 5.73 34.34 3.46
483 484 5.126067 AGTCATAAATGGATCCAACGGAAG 58.874 41.667 20.67 7.78 34.34 3.46
484 485 5.110814 AGTCATAAATGGATCCAACGGAA 57.889 39.130 20.67 3.24 34.34 4.30
485 486 4.444306 GGAGTCATAAATGGATCCAACGGA 60.444 45.833 20.67 9.52 34.77 4.69
486 487 3.815401 GGAGTCATAAATGGATCCAACGG 59.185 47.826 20.67 7.20 34.77 4.44
487 488 4.708177 AGGAGTCATAAATGGATCCAACG 58.292 43.478 20.67 5.73 36.14 4.10
488 489 5.300286 CCAAGGAGTCATAAATGGATCCAAC 59.700 44.000 20.67 11.34 36.14 3.77
489 490 5.193527 TCCAAGGAGTCATAAATGGATCCAA 59.806 40.000 20.67 2.02 36.14 3.53
490 491 4.726317 TCCAAGGAGTCATAAATGGATCCA 59.274 41.667 18.88 18.88 36.14 3.41
491 492 5.310409 TCCAAGGAGTCATAAATGGATCC 57.690 43.478 4.20 4.20 32.28 3.36
492 493 5.237344 CGTTCCAAGGAGTCATAAATGGATC 59.763 44.000 0.00 0.00 36.87 3.36
493 494 5.104527 TCGTTCCAAGGAGTCATAAATGGAT 60.105 40.000 0.00 0.00 36.87 3.41
494 495 4.224147 TCGTTCCAAGGAGTCATAAATGGA 59.776 41.667 0.00 0.00 35.27 3.41
495 496 4.513442 TCGTTCCAAGGAGTCATAAATGG 58.487 43.478 0.00 0.00 0.00 3.16
496 497 5.445939 CGTTCGTTCCAAGGAGTCATAAATG 60.446 44.000 0.00 0.00 0.00 2.32
497 498 4.630069 CGTTCGTTCCAAGGAGTCATAAAT 59.370 41.667 0.00 0.00 0.00 1.40
498 499 3.991773 CGTTCGTTCCAAGGAGTCATAAA 59.008 43.478 0.00 0.00 0.00 1.40
499 500 3.256383 TCGTTCGTTCCAAGGAGTCATAA 59.744 43.478 0.00 0.00 0.00 1.90
500 501 2.821378 TCGTTCGTTCCAAGGAGTCATA 59.179 45.455 0.00 0.00 0.00 2.15
501 502 1.616865 TCGTTCGTTCCAAGGAGTCAT 59.383 47.619 0.00 0.00 0.00 3.06
502 503 1.034356 TCGTTCGTTCCAAGGAGTCA 58.966 50.000 0.00 0.00 0.00 3.41
503 504 2.144482 TTCGTTCGTTCCAAGGAGTC 57.856 50.000 0.00 0.00 0.00 3.36
504 505 2.207590 GTTTCGTTCGTTCCAAGGAGT 58.792 47.619 0.00 0.00 0.00 3.85
505 506 1.529865 GGTTTCGTTCGTTCCAAGGAG 59.470 52.381 0.00 0.00 0.00 3.69
506 507 1.139455 AGGTTTCGTTCGTTCCAAGGA 59.861 47.619 0.00 0.00 0.00 3.36
507 508 1.263217 CAGGTTTCGTTCGTTCCAAGG 59.737 52.381 0.00 0.00 0.00 3.61
508 509 2.033151 GTCAGGTTTCGTTCGTTCCAAG 60.033 50.000 0.00 0.00 0.00 3.61
509 510 1.935199 GTCAGGTTTCGTTCGTTCCAA 59.065 47.619 0.00 0.00 0.00 3.53
510 511 1.574134 GTCAGGTTTCGTTCGTTCCA 58.426 50.000 0.00 0.00 0.00 3.53
511 512 0.505655 CGTCAGGTTTCGTTCGTTCC 59.494 55.000 0.00 0.00 0.00 3.62
512 513 0.111398 GCGTCAGGTTTCGTTCGTTC 60.111 55.000 0.00 0.00 0.00 3.95
513 514 1.814211 CGCGTCAGGTTTCGTTCGTT 61.814 55.000 0.00 0.00 0.00 3.85
514 515 2.297912 CGCGTCAGGTTTCGTTCGT 61.298 57.895 0.00 0.00 0.00 3.85
515 516 2.464189 CGCGTCAGGTTTCGTTCG 59.536 61.111 0.00 0.00 0.00 3.95
516 517 2.170273 GCGCGTCAGGTTTCGTTC 59.830 61.111 8.43 0.00 0.00 3.95
517 518 3.698463 CGCGCGTCAGGTTTCGTT 61.698 61.111 24.19 0.00 0.00 3.85
520 521 4.135493 GAGCGCGCGTCAGGTTTC 62.135 66.667 32.35 11.48 0.00 2.78
529 530 4.183526 CTCAAAGACGAGCGCGCG 62.184 66.667 31.62 31.62 42.48 6.86
539 540 0.880278 GTGCTCGGTGTGCTCAAAGA 60.880 55.000 0.00 0.00 0.00 2.52
558 559 2.549282 CAACTTCGTCGCCAACCG 59.451 61.111 0.00 0.00 38.61 4.44
583 584 2.352805 CCTCCACCAACCTGCCTC 59.647 66.667 0.00 0.00 0.00 4.70
588 589 2.846532 CCAAGCCTCCACCAACCT 59.153 61.111 0.00 0.00 0.00 3.50
595 596 1.714541 TTTTGAATGCCAAGCCTCCA 58.285 45.000 0.00 0.00 35.94 3.86
596 597 2.027837 ACATTTTGAATGCCAAGCCTCC 60.028 45.455 0.80 0.00 35.94 4.30
597 598 2.997986 CACATTTTGAATGCCAAGCCTC 59.002 45.455 0.80 0.00 35.94 4.70
598 599 2.633967 TCACATTTTGAATGCCAAGCCT 59.366 40.909 0.80 0.00 35.94 4.58
599 600 2.738314 GTCACATTTTGAATGCCAAGCC 59.262 45.455 0.80 0.00 35.39 4.35
600 601 2.738314 GGTCACATTTTGAATGCCAAGC 59.262 45.455 0.80 0.00 35.39 4.01
601 602 3.007182 AGGGTCACATTTTGAATGCCAAG 59.993 43.478 0.80 0.00 35.39 3.61
602 603 2.971330 AGGGTCACATTTTGAATGCCAA 59.029 40.909 0.80 0.00 35.39 4.52
603 604 2.299582 CAGGGTCACATTTTGAATGCCA 59.700 45.455 0.80 0.00 35.39 4.92
604 605 2.299867 ACAGGGTCACATTTTGAATGCC 59.700 45.455 0.80 0.00 35.39 4.40
605 606 3.578688 GACAGGGTCACATTTTGAATGC 58.421 45.455 0.80 0.00 35.39 3.56
606 607 3.366273 CGGACAGGGTCACATTTTGAATG 60.366 47.826 0.00 0.00 35.39 2.67
607 608 2.819608 CGGACAGGGTCACATTTTGAAT 59.180 45.455 0.00 0.00 35.39 2.57
608 609 2.226330 CGGACAGGGTCACATTTTGAA 58.774 47.619 0.00 0.00 35.39 2.69
609 610 1.544537 CCGGACAGGGTCACATTTTGA 60.545 52.381 0.00 0.00 33.68 2.69
610 611 0.881118 CCGGACAGGGTCACATTTTG 59.119 55.000 0.00 0.00 33.68 2.44
611 612 0.768622 TCCGGACAGGGTCACATTTT 59.231 50.000 0.00 0.00 41.52 1.82
612 613 0.036306 GTCCGGACAGGGTCACATTT 59.964 55.000 29.75 0.00 41.52 2.32
624 625 0.035820 TACCATTGCCAAGTCCGGAC 60.036 55.000 27.67 27.67 0.00 4.79
635 636 2.764314 CGTGCAGGGCTACCATTGC 61.764 63.158 0.00 5.65 40.13 3.56
636 637 2.764314 GCGTGCAGGGCTACCATTG 61.764 63.158 8.72 0.00 40.13 2.82
772 778 2.821366 GCCAGCCAGTGTCATCCG 60.821 66.667 0.00 0.00 0.00 4.18
790 800 0.387622 TCTTTCTCGGGCGTACGTTG 60.388 55.000 17.90 7.15 34.94 4.10
792 802 1.211190 GTCTTTCTCGGGCGTACGT 59.789 57.895 17.90 0.00 34.94 3.57
793 803 1.866496 CGTCTTTCTCGGGCGTACG 60.866 63.158 11.84 11.84 0.00 3.67
794 804 0.522915 CTCGTCTTTCTCGGGCGTAC 60.523 60.000 0.00 0.00 0.00 3.67
795 805 1.798735 CTCGTCTTTCTCGGGCGTA 59.201 57.895 0.00 0.00 0.00 4.42
799 828 2.202623 CGGCTCGTCTTTCTCGGG 60.203 66.667 0.00 0.00 0.00 5.14
976 1038 1.004560 CCTGCAGCCTCGTCTTTGA 60.005 57.895 8.66 0.00 0.00 2.69
1034 1108 0.174617 CTCGTGCCTCTTCTCCCTTC 59.825 60.000 0.00 0.00 0.00 3.46
1365 3145 2.556287 GGCTTCACAAGAACCGCG 59.444 61.111 0.00 0.00 0.00 6.46
1368 3148 2.954611 GGCGGCTTCACAAGAACC 59.045 61.111 0.00 0.00 0.00 3.62
1410 3213 1.153369 CAAGATCACGGCCATCGGT 60.153 57.895 2.24 0.00 44.45 4.69
1536 3345 6.294342 GGTGGTTAATTACAAGGGAAGAACAC 60.294 42.308 0.00 0.00 0.00 3.32
1538 3347 5.106436 CGGTGGTTAATTACAAGGGAAGAAC 60.106 44.000 0.00 0.00 0.00 3.01
1539 3348 5.005094 CGGTGGTTAATTACAAGGGAAGAA 58.995 41.667 0.00 0.00 0.00 2.52
1540 3349 4.566070 CCGGTGGTTAATTACAAGGGAAGA 60.566 45.833 0.00 0.00 0.00 2.87
1562 3371 3.195661 ACGAAGAAACTTATCGATGGCC 58.804 45.455 8.54 0.00 39.73 5.36
1569 3378 7.739043 CGGTACAGAAAAACGAAGAAACTTATC 59.261 37.037 0.00 0.00 0.00 1.75
1608 3421 4.635765 AGATGACAACGGGAACAACATATG 59.364 41.667 0.00 0.00 0.00 1.78
1610 3423 4.250464 GAGATGACAACGGGAACAACATA 58.750 43.478 0.00 0.00 0.00 2.29
1611 3424 3.074412 GAGATGACAACGGGAACAACAT 58.926 45.455 0.00 0.00 0.00 2.71
1612 3425 2.158885 TGAGATGACAACGGGAACAACA 60.159 45.455 0.00 0.00 0.00 3.33
1613 3426 2.489971 TGAGATGACAACGGGAACAAC 58.510 47.619 0.00 0.00 0.00 3.32
1614 3427 2.920724 TGAGATGACAACGGGAACAA 57.079 45.000 0.00 0.00 0.00 2.83
1627 3440 7.692088 AGCGAGTTATTGAGAAATTTGAGATG 58.308 34.615 0.00 0.00 0.00 2.90
1628 3441 7.856145 AGCGAGTTATTGAGAAATTTGAGAT 57.144 32.000 0.00 0.00 0.00 2.75
1647 3460 7.453034 TCGAATGAGTATTTGTTTAAAGCGAG 58.547 34.615 0.00 0.00 0.00 5.03
1703 3529 9.211485 TGCACTTTATAGTAGTACTTTTGAACC 57.789 33.333 8.40 0.00 31.96 3.62
1781 3612 4.142381 GCCAGGAAGTTGTCAATGTAATCC 60.142 45.833 0.00 0.00 0.00 3.01
1794 3625 3.497884 AAGCAGCGGCCAGGAAGTT 62.498 57.895 4.82 0.00 42.56 2.66
1819 3650 6.649155 AGCAAACTTGTTTAAACCCAGAAAT 58.351 32.000 15.59 2.40 0.00 2.17
1905 3742 9.700831 AACTAGCATAAACCATTAGGAAAAGAT 57.299 29.630 0.00 0.00 38.69 2.40
1969 3808 4.216042 CCTTTTGAAAATCCCACAATTGCC 59.784 41.667 5.05 0.00 0.00 4.52
2002 3841 2.435372 ATGTGGATTGCAATACCGGT 57.565 45.000 19.12 13.98 0.00 5.28
2003 3842 3.130164 TCAAATGTGGATTGCAATACCGG 59.870 43.478 19.12 0.00 0.00 5.28
2036 4134 3.074412 ACGGTACTCTTTGAAATGCCAG 58.926 45.455 0.00 0.00 0.00 4.85
2037 4135 2.811431 CACGGTACTCTTTGAAATGCCA 59.189 45.455 0.00 0.00 0.00 4.92
2038 4136 2.414161 GCACGGTACTCTTTGAAATGCC 60.414 50.000 0.00 0.00 0.00 4.40
2039 4137 2.414161 GGCACGGTACTCTTTGAAATGC 60.414 50.000 0.00 0.00 0.00 3.56
2073 4171 3.092301 CCTGAAGAGTTTGATTTCCCCC 58.908 50.000 0.00 0.00 0.00 5.40
2074 4172 3.092301 CCCTGAAGAGTTTGATTTCCCC 58.908 50.000 0.00 0.00 0.00 4.81
2075 4173 3.092301 CCCCTGAAGAGTTTGATTTCCC 58.908 50.000 0.00 0.00 0.00 3.97
2076 4174 3.092301 CCCCCTGAAGAGTTTGATTTCC 58.908 50.000 0.00 0.00 0.00 3.13
2077 4175 4.034285 TCCCCCTGAAGAGTTTGATTTC 57.966 45.455 0.00 0.00 0.00 2.17
2078 4176 4.469469 TTCCCCCTGAAGAGTTTGATTT 57.531 40.909 0.00 0.00 0.00 2.17
2079 4177 4.106341 TCTTTCCCCCTGAAGAGTTTGATT 59.894 41.667 0.00 0.00 33.63 2.57
2080 4178 3.657727 TCTTTCCCCCTGAAGAGTTTGAT 59.342 43.478 0.00 0.00 33.63 2.57
2081 4179 3.053077 TCTTTCCCCCTGAAGAGTTTGA 58.947 45.455 0.00 0.00 33.63 2.69
2082 4180 3.149981 GTCTTTCCCCCTGAAGAGTTTG 58.850 50.000 0.00 0.00 33.63 2.93
2083 4181 2.108425 GGTCTTTCCCCCTGAAGAGTTT 59.892 50.000 0.00 0.00 33.63 2.66
2084 4182 1.705745 GGTCTTTCCCCCTGAAGAGTT 59.294 52.381 0.00 0.00 33.63 3.01
2085 4183 1.363246 GGTCTTTCCCCCTGAAGAGT 58.637 55.000 0.00 0.00 33.63 3.24
2096 4194 0.544697 TTCTATGGGCCGGTCTTTCC 59.455 55.000 5.77 0.00 0.00 3.13
2098 4196 1.843851 TGATTCTATGGGCCGGTCTTT 59.156 47.619 5.77 0.00 0.00 2.52
2101 4199 0.468226 TGTGATTCTATGGGCCGGTC 59.532 55.000 1.90 0.00 0.00 4.79
2106 4204 4.613925 TCTGAGATGTGATTCTATGGGC 57.386 45.455 0.00 0.00 0.00 5.36
2114 4212 2.169144 TGTGGCGATCTGAGATGTGATT 59.831 45.455 0.00 0.00 0.00 2.57
2132 4230 2.936498 GGTTGATTGATCCCGTACTGTG 59.064 50.000 0.00 0.00 0.00 3.66
2138 4236 2.372172 GGATAGGGTTGATTGATCCCGT 59.628 50.000 0.00 0.00 45.27 5.28
2140 4238 3.307059 CGAGGATAGGGTTGATTGATCCC 60.307 52.174 0.00 0.00 37.39 3.85
2150 4248 1.342076 TGTGCTCTCGAGGATAGGGTT 60.342 52.381 13.56 0.00 0.00 4.11
2175 4273 4.852609 AACATGTTCGCGTCCTATTTAC 57.147 40.909 4.92 0.00 0.00 2.01
2193 4291 3.699538 AGACTATCCGTGACATGCTAACA 59.300 43.478 0.00 0.00 0.00 2.41
2218 4347 9.329913 GTCAAATGCAACTAAAGTTACACTATG 57.670 33.333 0.00 0.00 34.48 2.23
2230 4360 3.500680 GTCGAAGGGTCAAATGCAACTAA 59.499 43.478 0.00 0.00 0.00 2.24
2293 4458 4.428209 AGAGTTTGATGTAGACGCTCATG 58.572 43.478 0.00 0.00 0.00 3.07
2306 4471 4.348168 AGTGGAACCTGTGTAGAGTTTGAT 59.652 41.667 0.00 0.00 37.80 2.57
2332 4514 3.319755 TCGGTGGTTTGATCGTAGTTTC 58.680 45.455 0.00 0.00 0.00 2.78
2349 4531 4.630069 CGTTCCTTTTGATTCTGTATCGGT 59.370 41.667 0.00 0.00 35.94 4.69
2425 4607 1.340405 GGATCAAGCTGCTGGAGGAAA 60.340 52.381 12.99 0.00 0.00 3.13
2436 4618 2.012673 GCGATGTCAAAGGATCAAGCT 58.987 47.619 0.00 0.00 0.00 3.74
2499 4681 8.567104 TCAATTCGAAGTTTCAATTTCTCATGA 58.433 29.630 3.35 0.00 0.00 3.07
2519 4701 6.571150 GCATACAGCCCTCCATTATTCAATTC 60.571 42.308 0.00 0.00 37.23 2.17
2562 4744 2.509422 GGGATAACACCCTCGGCC 59.491 66.667 0.00 0.00 45.90 6.13
2592 4774 1.594862 CGTCATTTCTCATTCGCCTCC 59.405 52.381 0.00 0.00 0.00 4.30
2593 4775 2.540515 TCGTCATTTCTCATTCGCCTC 58.459 47.619 0.00 0.00 0.00 4.70
2610 4794 8.251721 GCTTGGGAGTATATTTGTATCTATCGT 58.748 37.037 0.00 0.00 0.00 3.73
2632 4816 8.781196 ACAACATATATATCTTGCAGAAGCTTG 58.219 33.333 2.10 0.00 42.74 4.01
2660 4844 4.572909 TGATCTGTGCAGCATATATCCAC 58.427 43.478 13.01 0.00 0.00 4.02
2711 4897 2.364324 ACATGACCACTAACACGTCAGT 59.636 45.455 0.00 0.00 39.72 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.