Multiple sequence alignment - TraesCS4D01G021500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G021500 chr4D 100.000 6575 0 0 1 6575 9222415 9228989 0.000000e+00 12142.0
1 TraesCS4D01G021500 chr4D 91.931 756 56 5 2097 2851 9241347 9242098 0.000000e+00 1053.0
2 TraesCS4D01G021500 chr4D 85.877 701 60 16 3658 4331 9242495 9243183 0.000000e+00 710.0
3 TraesCS4D01G021500 chr4D 91.051 257 21 2 4387 4641 9243409 9243665 4.880000e-91 346.0
4 TraesCS4D01G021500 chr4D 85.890 326 37 8 1658 1979 9240965 9241285 8.170000e-89 339.0
5 TraesCS4D01G021500 chr4D 83.934 361 30 14 3189 3540 9242111 9242452 2.960000e-83 320.0
6 TraesCS4D01G021500 chr4D 100.000 79 0 0 2952 3030 9225329 9225407 5.310000e-31 147.0
7 TraesCS4D01G021500 chr4D 100.000 79 0 0 2915 2993 9225366 9225444 5.310000e-31 147.0
8 TraesCS4D01G021500 chr4D 91.176 102 7 1 5488 5589 9246368 9246467 3.200000e-28 137.0
9 TraesCS4D01G021500 chr4D 83.212 137 22 1 5191 5326 9246025 9246161 2.490000e-24 124.0
10 TraesCS4D01G021500 chr4D 100.000 42 0 0 2989 3030 9225329 9225370 1.970000e-10 78.7
11 TraesCS4D01G021500 chr4D 100.000 42 0 0 2915 2956 9225403 9225444 1.970000e-10 78.7
12 TraesCS4D01G021500 chr4D 100.000 41 0 0 1305 1345 9240596 9240636 7.070000e-10 76.8
13 TraesCS4D01G021500 chr4D 90.566 53 4 1 710 761 9239438 9239490 1.180000e-07 69.4
14 TraesCS4D01G021500 chr4A 94.918 1771 47 14 1206 2956 594185756 594184009 0.000000e+00 2732.0
15 TraesCS4D01G021500 chr4A 93.806 1566 57 10 4349 5905 594181730 594180196 0.000000e+00 2318.0
16 TraesCS4D01G021500 chr4A 96.358 1373 41 6 2990 4354 594184049 594182678 0.000000e+00 2250.0
17 TraesCS4D01G021500 chr4A 89.447 995 87 15 1968 2956 594176870 594175888 0.000000e+00 1240.0
18 TraesCS4D01G021500 chr4A 93.981 432 20 3 5896 6326 594180014 594179588 0.000000e+00 649.0
19 TraesCS4D01G021500 chr4A 85.374 629 58 15 3718 4322 594175307 594174689 7.240000e-174 621.0
20 TraesCS4D01G021500 chr4A 84.821 560 52 10 2991 3540 594175926 594175390 3.490000e-147 532.0
21 TraesCS4D01G021500 chr4A 88.248 468 18 8 746 1204 594186845 594186406 5.840000e-145 525.0
22 TraesCS4D01G021500 chr4A 91.732 254 18 3 4387 4637 594174450 594174197 3.770000e-92 350.0
23 TraesCS4D01G021500 chr4A 92.797 236 17 0 4764 4999 594173692 594173457 6.310000e-90 342.0
24 TraesCS4D01G021500 chr4A 79.428 559 47 20 1437 1933 594177424 594176872 3.800000e-87 333.0
25 TraesCS4D01G021500 chr4A 92.553 188 14 0 4 191 594206218 594206031 3.020000e-68 270.0
26 TraesCS4D01G021500 chr4A 94.872 117 6 0 6459 6575 594179308 594179192 4.050000e-42 183.0
27 TraesCS4D01G021500 chr4A 100.000 41 0 0 2953 2993 594184049 594184009 7.070000e-10 76.8
28 TraesCS4D01G021500 chr4B 94.519 1715 50 11 1264 2956 17103969 17105661 0.000000e+00 2606.0
29 TraesCS4D01G021500 chr4B 95.317 1516 54 9 4349 5850 17106813 17108325 0.000000e+00 2390.0
30 TraesCS4D01G021500 chr4B 97.297 518 14 0 3837 4354 17105773 17106290 0.000000e+00 880.0
31 TraesCS4D01G021500 chr4B 86.309 745 69 15 2990 3718 17250246 17250973 0.000000e+00 780.0
32 TraesCS4D01G021500 chr4B 80.573 978 119 42 1425 2359 17248772 17249721 0.000000e+00 688.0
33 TraesCS4D01G021500 chr4B 82.895 836 70 38 393 1204 17102551 17103337 0.000000e+00 684.0
34 TraesCS4D01G021500 chr4B 87.958 573 50 10 2398 2956 17249719 17250286 0.000000e+00 658.0
35 TraesCS4D01G021500 chr4B 74.715 878 107 58 5099 5900 17251236 17252074 1.080000e-72 285.0
36 TraesCS4D01G021500 chr4B 89.756 205 6 1 5852 6056 17108424 17108613 1.420000e-61 248.0
37 TraesCS4D01G021500 chr4B 96.503 143 5 0 2989 3131 17105620 17105762 3.060000e-58 237.0
38 TraesCS4D01G021500 chr4B 87.879 66 4 2 714 775 17242738 17242803 2.540000e-09 75.0
39 TraesCS4D01G021500 chr5D 77.605 643 89 31 3 601 479446179 479446810 8.170000e-89 339.0
40 TraesCS4D01G021500 chr5D 90.541 74 6 1 6010 6083 537902153 537902081 5.430000e-16 97.1
41 TraesCS4D01G021500 chr5D 93.220 59 4 0 6345 6403 487403605 487403547 3.270000e-13 87.9
42 TraesCS4D01G021500 chr5D 91.935 62 3 2 6352 6411 418431148 418431087 1.170000e-12 86.1
43 TraesCS4D01G021500 chr2B 94.915 59 3 0 6347 6405 730560853 730560911 7.020000e-15 93.5
44 TraesCS4D01G021500 chr7B 93.333 60 4 0 6346 6405 438379364 438379423 9.080000e-14 89.8
45 TraesCS4D01G021500 chrUn 93.333 60 2 2 6354 6411 43583010 43582951 3.270000e-13 87.9
46 TraesCS4D01G021500 chrUn 88.732 71 5 3 6343 6411 1181914 1181983 4.220000e-12 84.2
47 TraesCS4D01G021500 chr3D 90.769 65 4 2 6349 6411 508385199 508385263 1.170000e-12 86.1
48 TraesCS4D01G021500 chr5A 89.552 67 4 3 6347 6411 640692680 640692745 1.520000e-11 82.4
49 TraesCS4D01G021500 chr1B 88.571 70 5 3 6344 6411 524160441 524160509 1.520000e-11 82.4
50 TraesCS4D01G021500 chr1A 85.246 61 7 2 619 678 372911560 372911501 1.980000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G021500 chr4D 9222415 9228989 6574 False 2518.680000 12142 100.00000 1 6575 5 chr4D.!!$F1 6574
1 TraesCS4D01G021500 chr4D 9239438 9246467 7029 False 352.800000 1053 89.29300 710 5589 9 chr4D.!!$F2 4879
2 TraesCS4D01G021500 chr4A 594173457 594186845 13388 True 934.753846 2732 91.21400 746 6575 13 chr4A.!!$R2 5829
3 TraesCS4D01G021500 chr4B 17102551 17108613 6062 False 1174.166667 2606 92.71450 393 6056 6 chr4B.!!$F2 5663
4 TraesCS4D01G021500 chr4B 17248772 17252074 3302 False 602.750000 780 82.38875 1425 5900 4 chr4B.!!$F3 4475
5 TraesCS4D01G021500 chr5D 479446179 479446810 631 False 339.000000 339 77.60500 3 601 1 chr5D.!!$F1 598

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
405 450 0.030235 CATGCCATGTCCAAGATGCG 59.970 55.000 0.00 0.00 0.00 4.73 F
437 482 0.041047 CAATGATGTACGCCGGCATG 60.041 55.000 28.98 14.14 0.00 4.06 F
569 622 0.323629 CTGGTTGGACGGCCTAGAAA 59.676 55.000 9.82 0.00 34.31 2.52 F
573 626 0.326595 TTGGACGGCCTAGAAATGCA 59.673 50.000 9.82 0.00 34.31 3.96 F
574 627 0.392461 TGGACGGCCTAGAAATGCAC 60.392 55.000 9.82 0.00 34.31 4.57 F
708 761 0.734942 CCACGCTTGGTCGTTCGTAT 60.735 55.000 0.00 0.00 41.21 3.06 F
712 765 0.997196 GCTTGGTCGTTCGTATCACC 59.003 55.000 0.00 0.00 0.00 4.02 F
1376 2197 1.003839 CTGCTCGTGTTAGGGCCAA 60.004 57.895 6.18 0.00 0.00 4.52 F
2949 3878 1.482182 TGCTCCTTCAGTGCATATCGT 59.518 47.619 0.00 0.00 39.96 3.73 F
4884 6784 0.889186 TTCGAACAGGAGCCTTTGCC 60.889 55.000 0.00 0.00 38.69 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1353 2174 0.537188 CCCTAACACGAGCAGATGGT 59.463 55.000 0.00 0.00 0.00 3.55 R
1722 2619 1.843368 CAGCAGTCATTTCCCCATGT 58.157 50.000 0.00 0.00 0.00 3.21 R
1956 2854 2.252072 TTATCACTCCCGGGCTGCAC 62.252 60.000 18.49 0.00 0.00 4.57 R
2496 3420 2.408050 AGTTTCACGCACTCTAAGCAG 58.592 47.619 0.00 0.00 0.00 4.24 R
2784 3710 9.965824 AAGTATCAAGGTTTAAGAACAAACATG 57.034 29.630 0.00 0.00 39.65 3.21 R
2879 3808 6.351711 CACTCCAAGATTTCCATGAGACATA 58.648 40.000 0.00 0.00 0.00 2.29 R
2938 3867 8.718102 AAACAAGAAATACTACGATATGCACT 57.282 30.769 0.00 0.00 0.00 4.40 R
3134 4063 0.252057 TTCCGTCCAGATGACCTCCA 60.252 55.000 0.00 0.00 41.18 3.86 R
4973 6873 1.140252 GACATAAGGGCGGCTCCTTTA 59.860 52.381 22.16 7.37 44.14 1.85 R
6416 8624 0.264955 TGGTGGATCCTACTCCCTCC 59.735 60.000 14.23 3.57 37.07 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.810852 GCCCAAGTGAAAGTGAGAAGAG 59.189 50.000 0.00 0.00 0.00 2.85
30 31 3.470709 CAAGTGAAAGTGAGAAGAGGCA 58.529 45.455 0.00 0.00 0.00 4.75
33 34 3.389329 AGTGAAAGTGAGAAGAGGCAGAA 59.611 43.478 0.00 0.00 0.00 3.02
36 37 2.317371 AGTGAGAAGAGGCAGAAGGA 57.683 50.000 0.00 0.00 0.00 3.36
37 38 2.614259 AGTGAGAAGAGGCAGAAGGAA 58.386 47.619 0.00 0.00 0.00 3.36
46 47 3.117512 AGAGGCAGAAGGAAAAGACCAAA 60.118 43.478 0.00 0.00 0.00 3.28
82 83 1.704582 GCGTGATGCTTCGACACTC 59.295 57.895 0.00 0.00 41.73 3.51
85 86 1.008875 GTGATGCTTCGACACTCGCA 61.009 55.000 0.00 0.00 40.21 5.10
99 100 2.975851 CACTCGCATTGCAAGAAACTTC 59.024 45.455 9.69 0.00 0.00 3.01
106 107 2.631160 TGCAAGAAACTTCGAAGGGA 57.369 45.000 27.86 8.42 0.00 4.20
110 111 3.424962 GCAAGAAACTTCGAAGGGATTCG 60.425 47.826 27.86 16.46 45.09 3.34
113 114 3.006537 AGAAACTTCGAAGGGATTCGTGA 59.993 43.478 27.86 0.96 44.18 4.35
142 143 4.163427 AGGAGGTGTCAATTGAGAAGAGA 58.837 43.478 8.80 0.00 0.00 3.10
143 144 4.222588 AGGAGGTGTCAATTGAGAAGAGAG 59.777 45.833 8.80 0.00 0.00 3.20
144 145 4.221703 GGAGGTGTCAATTGAGAAGAGAGA 59.778 45.833 8.80 0.00 0.00 3.10
145 146 5.279708 GGAGGTGTCAATTGAGAAGAGAGAA 60.280 44.000 8.80 0.00 0.00 2.87
146 147 5.792741 AGGTGTCAATTGAGAAGAGAGAAG 58.207 41.667 8.80 0.00 0.00 2.85
147 148 5.541868 AGGTGTCAATTGAGAAGAGAGAAGA 59.458 40.000 8.80 0.00 0.00 2.87
148 149 5.868801 GGTGTCAATTGAGAAGAGAGAAGAG 59.131 44.000 8.80 0.00 0.00 2.85
149 150 6.295011 GGTGTCAATTGAGAAGAGAGAAGAGA 60.295 42.308 8.80 0.00 0.00 3.10
150 151 6.808212 GTGTCAATTGAGAAGAGAGAAGAGAG 59.192 42.308 8.80 0.00 0.00 3.20
151 152 6.718912 TGTCAATTGAGAAGAGAGAAGAGAGA 59.281 38.462 8.80 0.00 0.00 3.10
164 165 4.273318 AGAAGAGAGAGAAGAGAGGAAGC 58.727 47.826 0.00 0.00 0.00 3.86
166 167 2.238646 AGAGAGAGAAGAGAGGAAGCGA 59.761 50.000 0.00 0.00 0.00 4.93
170 171 2.491693 AGAGAAGAGAGGAAGCGACAAG 59.508 50.000 0.00 0.00 0.00 3.16
179 180 2.630580 AGGAAGCGACAAGAGAAAGAGT 59.369 45.455 0.00 0.00 0.00 3.24
186 187 4.499183 CGACAAGAGAAAGAGTAGGCAAT 58.501 43.478 0.00 0.00 0.00 3.56
187 188 4.328440 CGACAAGAGAAAGAGTAGGCAATG 59.672 45.833 0.00 0.00 0.00 2.82
191 192 5.096443 AGAGAAAGAGTAGGCAATGAAGG 57.904 43.478 0.00 0.00 0.00 3.46
192 193 4.780021 AGAGAAAGAGTAGGCAATGAAGGA 59.220 41.667 0.00 0.00 0.00 3.36
194 195 4.287067 AGAAAGAGTAGGCAATGAAGGACA 59.713 41.667 0.00 0.00 0.00 4.02
195 196 4.640771 AAGAGTAGGCAATGAAGGACAA 57.359 40.909 0.00 0.00 0.00 3.18
197 198 4.521146 AGAGTAGGCAATGAAGGACAATG 58.479 43.478 0.00 0.00 33.02 2.82
201 202 2.288961 GCAATGAAGGACAATGCCTG 57.711 50.000 0.00 0.00 46.19 4.85
202 203 1.820519 GCAATGAAGGACAATGCCTGA 59.179 47.619 0.00 0.00 46.19 3.86
239 282 3.422061 AGCTCGCGCTAATCTCGA 58.578 55.556 5.56 0.00 46.79 4.04
241 284 0.592754 AGCTCGCGCTAATCTCGAAC 60.593 55.000 5.56 0.00 46.79 3.95
245 288 0.224005 CGCGCTAATCTCGAACGAAC 59.776 55.000 5.56 0.00 0.00 3.95
247 290 2.713011 GCGCTAATCTCGAACGAACTA 58.287 47.619 0.00 0.00 0.00 2.24
255 298 6.627395 AATCTCGAACGAACTAGAGATCAT 57.373 37.500 7.19 0.00 46.21 2.45
257 300 5.116882 TCTCGAACGAACTAGAGATCATGA 58.883 41.667 0.00 0.00 35.13 3.07
258 301 5.235401 TCTCGAACGAACTAGAGATCATGAG 59.765 44.000 0.09 0.00 35.13 2.90
260 303 4.295051 GAACGAACTAGAGATCATGAGGC 58.705 47.826 0.09 0.00 0.00 4.70
262 305 2.625314 CGAACTAGAGATCATGAGGCCA 59.375 50.000 5.01 0.00 0.00 5.36
263 306 3.068732 CGAACTAGAGATCATGAGGCCAA 59.931 47.826 5.01 0.00 0.00 4.52
264 307 4.376146 GAACTAGAGATCATGAGGCCAAC 58.624 47.826 5.01 0.00 0.00 3.77
271 316 0.035725 TCATGAGGCCAACTGAGCAG 60.036 55.000 5.01 0.00 0.00 4.24
286 331 4.672251 CAGGATGCCCCCAAGAAG 57.328 61.111 0.00 0.00 34.66 2.85
288 333 0.332632 CAGGATGCCCCCAAGAAGAA 59.667 55.000 0.00 0.00 34.66 2.52
289 334 1.084018 AGGATGCCCCCAAGAAGAAA 58.916 50.000 0.00 0.00 34.66 2.52
291 336 2.158173 AGGATGCCCCCAAGAAGAAAAA 60.158 45.455 0.00 0.00 34.66 1.94
313 358 4.391405 AAAGGTTTGGTTGCAGAAGAAG 57.609 40.909 0.00 0.00 0.00 2.85
359 404 3.001228 TGCGCGATCATCTTATGTTTGTC 59.999 43.478 12.10 0.00 0.00 3.18
361 406 3.362014 CGCGATCATCTTATGTTTGTCCG 60.362 47.826 0.00 0.00 0.00 4.79
372 417 7.598278 TCTTATGTTTGTCCGTTTTGCATAAT 58.402 30.769 0.00 0.00 0.00 1.28
375 420 7.810766 ATGTTTGTCCGTTTTGCATAATTAG 57.189 32.000 0.00 0.00 0.00 1.73
384 429 3.788227 TTGCATAATTAGGGCCGAGAT 57.212 42.857 0.00 0.00 0.00 2.75
385 430 3.057969 TGCATAATTAGGGCCGAGATG 57.942 47.619 0.00 0.13 0.00 2.90
386 431 1.740025 GCATAATTAGGGCCGAGATGC 59.260 52.381 13.43 13.43 0.00 3.91
387 432 2.875672 GCATAATTAGGGCCGAGATGCA 60.876 50.000 19.87 0.00 38.43 3.96
388 433 3.614092 CATAATTAGGGCCGAGATGCAT 58.386 45.455 0.00 0.00 0.00 3.96
389 434 1.901591 AATTAGGGCCGAGATGCATG 58.098 50.000 2.46 0.00 0.00 4.06
390 435 0.607489 ATTAGGGCCGAGATGCATGC 60.607 55.000 11.82 11.82 0.00 4.06
391 436 2.680974 TTAGGGCCGAGATGCATGCC 62.681 60.000 16.68 15.65 43.26 4.40
395 440 2.191513 GCCGAGATGCATGCCATGT 61.192 57.895 16.68 7.34 33.29 3.21
398 443 0.816421 CGAGATGCATGCCATGTCCA 60.816 55.000 16.68 0.00 40.22 4.02
405 450 0.030235 CATGCCATGTCCAAGATGCG 59.970 55.000 0.00 0.00 0.00 4.73
409 454 1.268896 GCCATGTCCAAGATGCGATTG 60.269 52.381 0.00 0.00 0.00 2.67
414 459 5.392919 CCATGTCCAAGATGCGATTGTTTTA 60.393 40.000 0.00 0.00 0.00 1.52
415 460 5.697473 TGTCCAAGATGCGATTGTTTTAA 57.303 34.783 0.00 0.00 0.00 1.52
433 478 1.701545 AACGCAATGATGTACGCCGG 61.702 55.000 0.00 0.00 0.00 6.13
435 480 2.468670 GCAATGATGTACGCCGGCA 61.469 57.895 28.98 7.02 0.00 5.69
437 482 0.041047 CAATGATGTACGCCGGCATG 60.041 55.000 28.98 14.14 0.00 4.06
438 483 1.165907 AATGATGTACGCCGGCATGG 61.166 55.000 28.98 13.29 42.50 3.66
478 526 7.746034 GCAACAATTTTCTAGCTTTATTTTGCC 59.254 33.333 0.00 0.00 0.00 4.52
482 530 8.606602 CAATTTTCTAGCTTTATTTTGCCATCC 58.393 33.333 0.00 0.00 0.00 3.51
483 531 5.499139 TTCTAGCTTTATTTTGCCATCCG 57.501 39.130 0.00 0.00 0.00 4.18
484 532 2.584492 AGCTTTATTTTGCCATCCGC 57.416 45.000 0.00 0.00 38.31 5.54
486 534 2.497273 AGCTTTATTTTGCCATCCGCTT 59.503 40.909 0.00 0.00 38.78 4.68
487 535 2.604462 GCTTTATTTTGCCATCCGCTTG 59.396 45.455 0.00 0.00 38.78 4.01
488 536 2.292103 TTATTTTGCCATCCGCTTGC 57.708 45.000 0.00 0.00 38.78 4.01
490 538 1.473258 ATTTTGCCATCCGCTTGCTA 58.527 45.000 0.00 0.00 38.78 3.49
491 539 1.473258 TTTTGCCATCCGCTTGCTAT 58.527 45.000 0.00 0.00 38.78 2.97
505 557 5.806502 CCGCTTGCTATTTTGATGATGAAAA 59.193 36.000 0.00 0.00 0.00 2.29
530 583 4.070716 TGTTTATTAGAAAACCGGCCGAA 58.929 39.130 30.73 11.76 38.35 4.30
531 584 4.518211 TGTTTATTAGAAAACCGGCCGAAA 59.482 37.500 30.73 12.19 38.35 3.46
536 589 0.815095 GAAAACCGGCCGAAATGGAT 59.185 50.000 30.73 5.48 42.00 3.41
551 604 1.227383 GGATCAAATGGGTCGGCCT 59.773 57.895 5.77 0.00 34.45 5.19
553 606 1.076777 ATCAAATGGGTCGGCCTGG 60.077 57.895 5.77 0.00 34.45 4.45
555 608 1.606313 CAAATGGGTCGGCCTGGTT 60.606 57.895 5.77 0.00 34.45 3.67
556 609 1.606313 AAATGGGTCGGCCTGGTTG 60.606 57.895 5.77 0.00 34.45 3.77
557 610 3.583882 AATGGGTCGGCCTGGTTGG 62.584 63.158 5.77 0.00 39.35 3.77
559 612 4.717313 GGGTCGGCCTGGTTGGAC 62.717 72.222 5.77 0.00 41.70 4.02
565 618 3.712907 GCCTGGTTGGACGGCCTA 61.713 66.667 9.82 0.00 37.86 3.93
566 619 2.584608 CCTGGTTGGACGGCCTAG 59.415 66.667 9.82 1.17 38.35 3.02
567 620 1.987855 CCTGGTTGGACGGCCTAGA 60.988 63.158 9.82 0.00 38.35 2.43
568 621 1.550130 CCTGGTTGGACGGCCTAGAA 61.550 60.000 9.82 0.00 38.35 2.10
569 622 0.323629 CTGGTTGGACGGCCTAGAAA 59.676 55.000 9.82 0.00 34.31 2.52
570 623 0.988832 TGGTTGGACGGCCTAGAAAT 59.011 50.000 9.82 0.00 34.31 2.17
571 624 1.339631 TGGTTGGACGGCCTAGAAATG 60.340 52.381 9.82 0.00 34.31 2.32
572 625 0.733150 GTTGGACGGCCTAGAAATGC 59.267 55.000 9.82 0.00 34.31 3.56
573 626 0.326595 TTGGACGGCCTAGAAATGCA 59.673 50.000 9.82 0.00 34.31 3.96
574 627 0.392461 TGGACGGCCTAGAAATGCAC 60.392 55.000 9.82 0.00 34.31 4.57
575 628 1.429148 GGACGGCCTAGAAATGCACG 61.429 60.000 0.00 0.00 0.00 5.34
576 629 1.429148 GACGGCCTAGAAATGCACGG 61.429 60.000 0.00 0.00 0.00 4.94
577 630 1.153449 CGGCCTAGAAATGCACGGA 60.153 57.895 0.00 0.00 0.00 4.69
578 631 1.429148 CGGCCTAGAAATGCACGGAC 61.429 60.000 0.00 0.00 0.00 4.79
579 632 0.392461 GGCCTAGAAATGCACGGACA 60.392 55.000 0.00 0.00 0.00 4.02
580 633 1.448985 GCCTAGAAATGCACGGACAA 58.551 50.000 0.00 0.00 0.00 3.18
581 634 1.398390 GCCTAGAAATGCACGGACAAG 59.602 52.381 0.00 0.00 0.00 3.16
587 640 2.449031 AATGCACGGACAAGGAGCGA 62.449 55.000 0.00 0.00 0.00 4.93
590 643 2.049433 ACGGACAAGGAGCGAACG 60.049 61.111 0.00 0.00 0.00 3.95
602 655 4.124351 CGAACGCCGCCTCTACCA 62.124 66.667 0.00 0.00 0.00 3.25
603 656 2.263540 GAACGCCGCCTCTACCAA 59.736 61.111 0.00 0.00 0.00 3.67
605 658 2.775032 GAACGCCGCCTCTACCAACA 62.775 60.000 0.00 0.00 0.00 3.33
607 660 1.449601 CGCCGCCTCTACCAACAAT 60.450 57.895 0.00 0.00 0.00 2.71
611 664 1.656652 CGCCTCTACCAACAATCCAG 58.343 55.000 0.00 0.00 0.00 3.86
614 667 2.893637 CCTCTACCAACAATCCAGACG 58.106 52.381 0.00 0.00 0.00 4.18
617 670 4.383118 CCTCTACCAACAATCCAGACGAAT 60.383 45.833 0.00 0.00 0.00 3.34
622 675 6.254281 ACCAACAATCCAGACGAATAAAAG 57.746 37.500 0.00 0.00 0.00 2.27
624 677 6.072673 ACCAACAATCCAGACGAATAAAAGAC 60.073 38.462 0.00 0.00 0.00 3.01
625 678 5.779806 ACAATCCAGACGAATAAAAGACG 57.220 39.130 0.00 0.00 0.00 4.18
627 680 5.929992 ACAATCCAGACGAATAAAAGACGAA 59.070 36.000 0.00 0.00 0.00 3.85
628 681 6.594159 ACAATCCAGACGAATAAAAGACGAAT 59.406 34.615 0.00 0.00 0.00 3.34
632 685 8.537049 TCCAGACGAATAAAAGACGAATAAAA 57.463 30.769 0.00 0.00 0.00 1.52
633 686 9.158233 TCCAGACGAATAAAAGACGAATAAAAT 57.842 29.630 0.00 0.00 0.00 1.82
638 691 9.365311 ACGAATAAAAGACGAATAAAATATGCG 57.635 29.630 0.00 0.00 0.00 4.73
643 696 4.703899 GACGAATAAAATATGCGTCCGT 57.296 40.909 16.54 0.00 43.80 4.69
644 697 5.074430 GACGAATAAAATATGCGTCCGTT 57.926 39.130 16.54 0.00 43.80 4.44
647 700 4.144051 CGAATAAAATATGCGTCCGTTTGC 59.856 41.667 0.00 0.00 0.00 3.68
648 701 2.999507 AAAATATGCGTCCGTTTGCA 57.000 40.000 0.00 0.00 46.51 4.08
653 706 4.811761 GCGTCCGTTTGCATCGGC 62.812 66.667 21.03 15.95 46.49 5.54
654 707 4.499023 CGTCCGTTTGCATCGGCG 62.499 66.667 21.03 21.33 46.49 6.46
655 708 4.811761 GTCCGTTTGCATCGGCGC 62.812 66.667 21.03 0.00 46.49 6.53
662 715 2.778551 TTTGCATCGGCGCGTTGAAG 62.779 55.000 8.43 4.19 45.35 3.02
663 716 3.788766 GCATCGGCGCGTTGAAGT 61.789 61.111 8.43 0.00 0.00 3.01
664 717 2.860293 CATCGGCGCGTTGAAGTT 59.140 55.556 8.43 0.00 0.00 2.66
665 718 1.509787 CATCGGCGCGTTGAAGTTG 60.510 57.895 8.43 0.00 0.00 3.16
666 719 1.666553 ATCGGCGCGTTGAAGTTGA 60.667 52.632 8.43 0.00 0.00 3.18
667 720 1.897398 ATCGGCGCGTTGAAGTTGAC 61.897 55.000 8.43 0.00 0.00 3.18
668 721 2.251371 GGCGCGTTGAAGTTGACC 59.749 61.111 8.43 0.00 0.00 4.02
669 722 2.251642 GGCGCGTTGAAGTTGACCT 61.252 57.895 8.43 0.00 0.00 3.85
670 723 0.947180 GGCGCGTTGAAGTTGACCTA 60.947 55.000 8.43 0.00 0.00 3.08
671 724 0.863144 GCGCGTTGAAGTTGACCTAA 59.137 50.000 8.43 0.00 0.00 2.69
673 726 2.095919 GCGCGTTGAAGTTGACCTAATT 60.096 45.455 8.43 0.00 0.00 1.40
674 727 3.732943 CGCGTTGAAGTTGACCTAATTC 58.267 45.455 0.00 0.00 0.00 2.17
675 728 3.185594 CGCGTTGAAGTTGACCTAATTCA 59.814 43.478 0.00 0.00 0.00 2.57
676 729 4.319190 CGCGTTGAAGTTGACCTAATTCAA 60.319 41.667 0.00 3.74 38.85 2.69
700 753 2.870372 GTGATGCCACGCTTGGTC 59.130 61.111 11.38 1.97 45.98 4.02
703 756 2.281484 ATGCCACGCTTGGTCGTT 60.281 55.556 11.38 0.00 45.98 3.85
704 757 2.240612 GATGCCACGCTTGGTCGTTC 62.241 60.000 11.38 0.00 45.98 3.95
705 758 4.072088 GCCACGCTTGGTCGTTCG 62.072 66.667 11.38 0.00 45.98 3.95
706 759 2.660552 CCACGCTTGGTCGTTCGT 60.661 61.111 0.00 0.00 41.21 3.85
707 760 1.372004 CCACGCTTGGTCGTTCGTA 60.372 57.895 0.00 0.00 41.21 3.43
708 761 0.734942 CCACGCTTGGTCGTTCGTAT 60.735 55.000 0.00 0.00 41.21 3.06
712 765 0.997196 GCTTGGTCGTTCGTATCACC 59.003 55.000 0.00 0.00 0.00 4.02
721 781 2.610976 CGTTCGTATCACCTGGAAACCA 60.611 50.000 0.00 0.00 0.00 3.67
796 857 3.336715 GATTCCGCACGGCCAAACC 62.337 63.158 2.24 0.00 34.68 3.27
858 919 4.194720 GCGTCGAGCGATCCACCT 62.195 66.667 10.82 0.00 44.77 4.00
863 924 2.413765 GAGCGATCCACCTCGTCC 59.586 66.667 0.00 0.00 40.73 4.79
982 1068 1.841277 ACCCTTCTCGAGCTCTCTCTA 59.159 52.381 12.85 0.00 37.19 2.43
1214 2035 2.673893 GCCATTTCGGGTTCCAATGTTC 60.674 50.000 0.00 0.00 34.06 3.18
1257 2078 5.656213 GGAACCAAGCTACTACTACTTCA 57.344 43.478 0.00 0.00 0.00 3.02
1258 2079 6.223351 GGAACCAAGCTACTACTACTTCAT 57.777 41.667 0.00 0.00 0.00 2.57
1259 2080 7.344095 GGAACCAAGCTACTACTACTTCATA 57.656 40.000 0.00 0.00 0.00 2.15
1261 2082 8.422566 GGAACCAAGCTACTACTACTTCATAAT 58.577 37.037 0.00 0.00 0.00 1.28
1262 2083 9.465985 GAACCAAGCTACTACTACTTCATAATC 57.534 37.037 0.00 0.00 0.00 1.75
1296 2117 2.030457 GCAATTCGTAGATGGAACGTGG 59.970 50.000 0.00 0.00 41.08 4.94
1353 2174 4.813750 TGTTTCATCTCTCATGCTCTGA 57.186 40.909 0.00 0.00 0.00 3.27
1376 2197 1.003839 CTGCTCGTGTTAGGGCCAA 60.004 57.895 6.18 0.00 0.00 4.52
1382 2203 3.003378 GCTCGTGTTAGGGCCAATTAATC 59.997 47.826 6.18 0.00 0.00 1.75
1388 2209 7.339721 TCGTGTTAGGGCCAATTAATCAAATTA 59.660 33.333 6.18 0.00 35.54 1.40
1495 2338 7.015682 TGAGACCTGATGACTATAAGATTTCCC 59.984 40.741 0.00 0.00 0.00 3.97
1516 2361 4.460382 CCCTCTAAACATGCTTGTGAATGT 59.540 41.667 5.94 0.00 44.04 2.71
1722 2619 2.203084 TTGTCTTTCGCGGTGGCA 60.203 55.556 6.13 1.11 39.92 4.92
1744 2641 1.675641 GGGGAAATGACTGCTGCGT 60.676 57.895 0.00 0.00 0.00 5.24
1758 2655 2.225491 TGCTGCGTGGTATTTTCTTGAC 59.775 45.455 0.00 0.00 0.00 3.18
1909 2807 1.762370 TCTCTGTTGAGTTGCTGTCCA 59.238 47.619 0.00 0.00 40.98 4.02
1956 2854 5.237048 CCAACTTTGTGTTTATGATTGGGG 58.763 41.667 0.00 0.00 36.63 4.96
2144 3068 2.241160 AGGCTGTGATGAAATTGCACA 58.759 42.857 0.00 0.00 39.95 4.57
2380 3304 5.966853 TGTTCAACATATATGGGACCTGA 57.033 39.130 16.96 8.22 0.00 3.86
2496 3420 3.937706 CTGACAGAATGAATGAGTCCACC 59.062 47.826 0.00 0.00 39.69 4.61
2879 3808 5.819991 ACTTGTCCTGGTGATGATTATGTT 58.180 37.500 0.00 0.00 0.00 2.71
2938 3867 6.147164 CGTATTTCTTGTTTACTGCTCCTTCA 59.853 38.462 0.00 0.00 0.00 3.02
2939 3868 6.566197 ATTTCTTGTTTACTGCTCCTTCAG 57.434 37.500 0.00 0.00 39.86 3.02
2941 3870 4.380531 TCTTGTTTACTGCTCCTTCAGTG 58.619 43.478 6.67 0.00 45.95 3.66
2942 3871 2.494059 TGTTTACTGCTCCTTCAGTGC 58.506 47.619 6.67 0.00 45.95 4.40
2943 3872 2.158827 TGTTTACTGCTCCTTCAGTGCA 60.159 45.455 6.67 0.00 45.95 4.57
2944 3873 3.077359 GTTTACTGCTCCTTCAGTGCAT 58.923 45.455 6.67 0.00 45.95 3.96
2945 3874 4.253685 GTTTACTGCTCCTTCAGTGCATA 58.746 43.478 6.67 0.00 45.95 3.14
2946 3875 4.760530 TTACTGCTCCTTCAGTGCATAT 57.239 40.909 6.67 0.00 45.95 1.78
2947 3876 3.191078 ACTGCTCCTTCAGTGCATATC 57.809 47.619 0.00 0.00 44.88 1.63
2948 3877 2.133553 CTGCTCCTTCAGTGCATATCG 58.866 52.381 0.00 0.00 43.63 2.92
2949 3878 1.482182 TGCTCCTTCAGTGCATATCGT 59.518 47.619 0.00 0.00 39.96 3.73
2950 3879 2.693074 TGCTCCTTCAGTGCATATCGTA 59.307 45.455 0.00 0.00 39.96 3.43
2951 3880 3.243535 TGCTCCTTCAGTGCATATCGTAG 60.244 47.826 0.00 0.00 39.96 3.51
2952 3881 3.243569 GCTCCTTCAGTGCATATCGTAGT 60.244 47.826 0.00 0.00 35.02 2.73
2953 3882 4.023107 GCTCCTTCAGTGCATATCGTAGTA 60.023 45.833 0.00 0.00 35.02 1.82
2954 3883 5.336055 GCTCCTTCAGTGCATATCGTAGTAT 60.336 44.000 0.00 0.00 35.02 2.12
2955 3884 6.650427 TCCTTCAGTGCATATCGTAGTATT 57.350 37.500 0.00 0.00 0.00 1.89
2956 3885 7.050970 TCCTTCAGTGCATATCGTAGTATTT 57.949 36.000 0.00 0.00 0.00 1.40
2957 3886 7.145985 TCCTTCAGTGCATATCGTAGTATTTC 58.854 38.462 0.00 0.00 0.00 2.17
2958 3887 7.014326 TCCTTCAGTGCATATCGTAGTATTTCT 59.986 37.037 0.00 0.00 0.00 2.52
2959 3888 7.653713 CCTTCAGTGCATATCGTAGTATTTCTT 59.346 37.037 0.00 0.00 0.00 2.52
2960 3889 7.930513 TCAGTGCATATCGTAGTATTTCTTG 57.069 36.000 0.00 0.00 0.00 3.02
2961 3890 7.489160 TCAGTGCATATCGTAGTATTTCTTGT 58.511 34.615 0.00 0.00 0.00 3.16
2962 3891 7.979537 TCAGTGCATATCGTAGTATTTCTTGTT 59.020 33.333 0.00 0.00 0.00 2.83
2963 3892 8.604035 CAGTGCATATCGTAGTATTTCTTGTTT 58.396 33.333 0.00 0.00 0.00 2.83
2964 3893 9.811995 AGTGCATATCGTAGTATTTCTTGTTTA 57.188 29.630 0.00 0.00 0.00 2.01
2965 3894 9.845305 GTGCATATCGTAGTATTTCTTGTTTAC 57.155 33.333 0.00 0.00 0.00 2.01
2966 3895 9.811995 TGCATATCGTAGTATTTCTTGTTTACT 57.188 29.630 0.00 0.00 0.00 2.24
2970 3899 7.807687 TCGTAGTATTTCTTGTTTACTGCTC 57.192 36.000 0.00 0.00 0.00 4.26
2971 3900 6.810182 TCGTAGTATTTCTTGTTTACTGCTCC 59.190 38.462 0.00 0.00 0.00 4.70
2972 3901 6.812160 CGTAGTATTTCTTGTTTACTGCTCCT 59.188 38.462 0.00 0.00 0.00 3.69
2973 3902 7.331193 CGTAGTATTTCTTGTTTACTGCTCCTT 59.669 37.037 0.00 0.00 0.00 3.36
2974 3903 7.674471 AGTATTTCTTGTTTACTGCTCCTTC 57.326 36.000 0.00 0.00 0.00 3.46
2975 3904 7.224297 AGTATTTCTTGTTTACTGCTCCTTCA 58.776 34.615 0.00 0.00 0.00 3.02
2976 3905 6.566197 ATTTCTTGTTTACTGCTCCTTCAG 57.434 37.500 0.00 0.00 39.86 3.02
2978 3907 4.380531 TCTTGTTTACTGCTCCTTCAGTG 58.619 43.478 6.67 0.00 45.95 3.66
2979 3908 2.494059 TGTTTACTGCTCCTTCAGTGC 58.506 47.619 6.67 0.00 45.95 4.40
2980 3909 2.158827 TGTTTACTGCTCCTTCAGTGCA 60.159 45.455 6.67 0.00 45.95 4.57
2981 3910 3.077359 GTTTACTGCTCCTTCAGTGCAT 58.923 45.455 6.67 0.00 45.95 3.96
2982 3911 4.253685 GTTTACTGCTCCTTCAGTGCATA 58.746 43.478 6.67 0.00 45.95 3.14
2983 3912 4.760530 TTACTGCTCCTTCAGTGCATAT 57.239 40.909 6.67 0.00 45.95 1.78
2984 3913 3.191078 ACTGCTCCTTCAGTGCATATC 57.809 47.619 0.00 0.00 44.88 1.63
2985 3914 2.133553 CTGCTCCTTCAGTGCATATCG 58.866 52.381 0.00 0.00 43.63 2.92
2986 3915 1.482182 TGCTCCTTCAGTGCATATCGT 59.518 47.619 0.00 0.00 39.96 3.73
2987 3916 2.693074 TGCTCCTTCAGTGCATATCGTA 59.307 45.455 0.00 0.00 39.96 3.43
2988 3917 3.243535 TGCTCCTTCAGTGCATATCGTAG 60.244 47.826 0.00 0.00 39.96 3.51
2989 3918 3.243569 GCTCCTTCAGTGCATATCGTAGT 60.244 47.826 0.00 0.00 35.02 2.73
2990 3919 4.023107 GCTCCTTCAGTGCATATCGTAGTA 60.023 45.833 0.00 0.00 35.02 1.82
2991 3920 5.336055 GCTCCTTCAGTGCATATCGTAGTAT 60.336 44.000 0.00 0.00 35.02 2.12
2992 3921 6.650427 TCCTTCAGTGCATATCGTAGTATT 57.350 37.500 0.00 0.00 0.00 1.89
2993 3922 7.050970 TCCTTCAGTGCATATCGTAGTATTT 57.949 36.000 0.00 0.00 0.00 1.40
2994 3923 7.145985 TCCTTCAGTGCATATCGTAGTATTTC 58.854 38.462 0.00 0.00 0.00 2.17
2995 3924 7.014326 TCCTTCAGTGCATATCGTAGTATTTCT 59.986 37.037 0.00 0.00 0.00 2.52
2996 3925 7.653713 CCTTCAGTGCATATCGTAGTATTTCTT 59.346 37.037 0.00 0.00 0.00 2.52
2997 3926 7.930513 TCAGTGCATATCGTAGTATTTCTTG 57.069 36.000 0.00 0.00 0.00 3.02
2998 3927 7.489160 TCAGTGCATATCGTAGTATTTCTTGT 58.511 34.615 0.00 0.00 0.00 3.16
2999 3928 7.979537 TCAGTGCATATCGTAGTATTTCTTGTT 59.020 33.333 0.00 0.00 0.00 2.83
3000 3929 8.604035 CAGTGCATATCGTAGTATTTCTTGTTT 58.396 33.333 0.00 0.00 0.00 2.83
3001 3930 9.811995 AGTGCATATCGTAGTATTTCTTGTTTA 57.188 29.630 0.00 0.00 0.00 2.01
3002 3931 9.845305 GTGCATATCGTAGTATTTCTTGTTTAC 57.155 33.333 0.00 0.00 0.00 2.01
3003 3932 9.811995 TGCATATCGTAGTATTTCTTGTTTACT 57.188 29.630 0.00 0.00 0.00 2.24
3007 3936 7.807687 TCGTAGTATTTCTTGTTTACTGCTC 57.192 36.000 0.00 0.00 0.00 4.26
3008 3937 6.810182 TCGTAGTATTTCTTGTTTACTGCTCC 59.190 38.462 0.00 0.00 0.00 4.70
3009 3938 6.812160 CGTAGTATTTCTTGTTTACTGCTCCT 59.188 38.462 0.00 0.00 0.00 3.69
3010 3939 7.331193 CGTAGTATTTCTTGTTTACTGCTCCTT 59.669 37.037 0.00 0.00 0.00 3.36
3011 3940 7.674471 AGTATTTCTTGTTTACTGCTCCTTC 57.326 36.000 0.00 0.00 0.00 3.46
3122 4051 5.191722 TCCTATCCAAAAAGTAGGTGCTGAT 59.808 40.000 0.00 0.00 37.01 2.90
3167 4096 2.614057 GGACGGAATGAACCTATTGCTG 59.386 50.000 0.00 0.00 0.00 4.41
3293 4222 5.107220 ACGTTTTTACTAGTTCCATGCGAAG 60.107 40.000 0.00 0.00 0.00 3.79
3303 4232 3.071874 TCCATGCGAAGTTTTGGATCT 57.928 42.857 0.00 0.00 33.40 2.75
3380 4309 8.588472 TGTCATGACATTATGTTATAGAGGAGG 58.412 37.037 24.56 0.00 36.21 4.30
3580 4510 2.107204 ACAAGAAACTGTCAGCTGGGAT 59.893 45.455 15.13 0.00 0.00 3.85
3585 4515 3.515602 AACTGTCAGCTGGGATTTTCT 57.484 42.857 15.13 0.00 0.00 2.52
3625 4555 5.793030 TGGGGACATTTATTTGTTCGTTT 57.207 34.783 0.00 0.00 33.40 3.60
3666 4603 1.694150 TGGTATCAGCCTATCAGGTGC 59.306 52.381 0.00 0.00 37.80 5.01
3734 4671 8.390354 CAATCAGACGCAATAATCAAACTCTAA 58.610 33.333 0.00 0.00 0.00 2.10
3829 4766 8.986929 ATAGTTTCCTAGATCCTTCCATTTTG 57.013 34.615 0.00 0.00 0.00 2.44
3844 4781 7.782644 CCTTCCATTTTGGGGACATAACTATAA 59.217 37.037 0.00 0.00 42.32 0.98
3908 4845 2.752903 GCCACACCTTTCCGATAAATGT 59.247 45.455 0.00 0.00 0.00 2.71
3990 4927 8.126700 GTGGGTAATTTATGGAAGTAATTCGTG 58.873 37.037 0.00 0.00 0.00 4.35
4211 5148 1.285078 AGGGGGAAGAACTATGTTGCC 59.715 52.381 0.00 0.00 39.29 4.52
4262 5199 5.366460 TGTTGTGCAATCATTTTCAATGGT 58.634 33.333 0.00 0.00 0.00 3.55
4302 5239 5.106515 GCTGTTGGGAGAGAACTGTTATTTC 60.107 44.000 0.00 0.00 0.00 2.17
4331 5268 4.099419 TGCTAATACATCACAGTCGTGGAT 59.901 41.667 0.00 0.00 43.79 3.41
4429 6328 3.456280 TGCTGTTTGAAGAAAACCATGC 58.544 40.909 0.00 2.38 46.47 4.06
4444 6343 8.474831 AGAAAACCATGCTTTTTGTACTAGTTT 58.525 29.630 0.00 0.00 0.00 2.66
4481 6380 3.375922 CCGTTATTCCGGCATTTTACAGT 59.624 43.478 0.00 0.00 41.78 3.55
4502 6401 4.999950 AGTCTGTGGCATCTTACTTTTCTG 59.000 41.667 0.00 0.00 0.00 3.02
4533 6433 7.766219 TTGGTACGAGTTCTCTTAATAATGC 57.234 36.000 0.00 0.00 0.00 3.56
4686 6586 2.645802 ACGCTGTTACTGAAAACCCAA 58.354 42.857 0.00 0.00 0.00 4.12
4687 6587 2.356695 ACGCTGTTACTGAAAACCCAAC 59.643 45.455 0.00 0.00 0.00 3.77
4689 6589 2.356695 GCTGTTACTGAAAACCCAACGT 59.643 45.455 0.00 0.00 0.00 3.99
4705 6605 8.774890 AACCCAACGTAAAACACTTTTATTTT 57.225 26.923 0.00 0.00 37.44 1.82
4790 6690 7.762588 TCTTGTTTTATCCCGGAATAAACAA 57.237 32.000 25.96 25.96 32.30 2.83
4884 6784 0.889186 TTCGAACAGGAGCCTTTGCC 60.889 55.000 0.00 0.00 38.69 4.52
5128 7029 0.960364 TCGGCTGGAATGAAACTGGC 60.960 55.000 0.00 0.00 0.00 4.85
5137 7038 1.453155 ATGAAACTGGCGCCTAACAG 58.547 50.000 29.70 19.16 40.48 3.16
5187 7088 7.013369 GGTATTACAATCCAGTTCATTCCTTCC 59.987 40.741 0.00 0.00 0.00 3.46
5354 7257 7.120285 GCATATTGTACTGTGGCATATCATTCT 59.880 37.037 0.00 0.00 0.00 2.40
5364 7267 3.725740 GGCATATCATTCTTTTTGCGACG 59.274 43.478 0.00 0.00 0.00 5.12
5414 7317 5.047377 TCAAACAAAGGGACTATGAAATGGC 60.047 40.000 0.00 0.00 38.49 4.40
5467 7372 0.937304 ATACCATTGCATCGCGTCAC 59.063 50.000 5.77 0.00 0.00 3.67
5520 7429 1.250154 TTGGCAATTTCAGGGAGGCG 61.250 55.000 0.00 0.00 0.00 5.52
5688 7606 3.818210 AGTGGTTTTGCATGTTACGATCA 59.182 39.130 0.00 0.00 0.00 2.92
5947 8154 2.030805 GGTTGAAGGCAAACACAGCTAG 60.031 50.000 0.00 0.00 41.42 3.42
5955 8162 2.749621 GCAAACACAGCTAGCAAGGTAT 59.250 45.455 18.83 0.00 0.00 2.73
6069 8276 9.653287 ATGTTTACAGGTATTACATATGGATCG 57.347 33.333 7.80 0.00 0.00 3.69
6077 8284 4.521130 TTACATATGGATCGTGAGGAGC 57.479 45.455 7.80 0.00 0.00 4.70
6098 8305 3.439129 GCACCTAACCACAAATGTCTACC 59.561 47.826 0.00 0.00 0.00 3.18
6190 8398 8.134905 ACAAAAGAGCATGAAACAAAAGATTC 57.865 30.769 0.00 0.00 0.00 2.52
6214 8422 5.547276 CCTCCATCTCCTTAATCTCCTTGAT 59.453 44.000 0.00 0.00 36.89 2.57
6235 8443 2.693591 TGACGACACCATAAGATCCTCC 59.306 50.000 0.00 0.00 0.00 4.30
6236 8444 2.959707 GACGACACCATAAGATCCTCCT 59.040 50.000 0.00 0.00 0.00 3.69
6265 8473 8.702438 CACACAATTGATATTTTTCACCACTTC 58.298 33.333 13.59 0.00 0.00 3.01
6266 8474 8.641541 ACACAATTGATATTTTTCACCACTTCT 58.358 29.630 13.59 0.00 0.00 2.85
6267 8475 9.480053 CACAATTGATATTTTTCACCACTTCTT 57.520 29.630 13.59 0.00 0.00 2.52
6270 8478 7.945033 TTGATATTTTTCACCACTTCTTTGC 57.055 32.000 0.00 0.00 0.00 3.68
6271 8479 7.048629 TGATATTTTTCACCACTTCTTTGCA 57.951 32.000 0.00 0.00 0.00 4.08
6272 8480 7.495901 TGATATTTTTCACCACTTCTTTGCAA 58.504 30.769 0.00 0.00 0.00 4.08
6273 8481 8.149647 TGATATTTTTCACCACTTCTTTGCAAT 58.850 29.630 0.00 0.00 0.00 3.56
6274 8482 8.907222 ATATTTTTCACCACTTCTTTGCAATT 57.093 26.923 0.00 0.00 0.00 2.32
6275 8483 6.660887 TTTTTCACCACTTCTTTGCAATTC 57.339 33.333 0.00 0.00 0.00 2.17
6276 8484 3.624326 TCACCACTTCTTTGCAATTCG 57.376 42.857 0.00 0.00 0.00 3.34
6293 8501 6.147581 GCAATTCGATGCAATATGAAGATGT 58.852 36.000 6.13 0.00 45.70 3.06
6294 8502 6.639686 GCAATTCGATGCAATATGAAGATGTT 59.360 34.615 6.13 0.00 45.70 2.71
6302 8510 3.956199 CAATATGAAGATGTTGCACCCCT 59.044 43.478 0.00 0.00 0.00 4.79
6315 8523 0.984230 CACCCCTAAGTCTTCAGCCA 59.016 55.000 0.00 0.00 0.00 4.75
6318 8526 1.351017 CCCCTAAGTCTTCAGCCAACA 59.649 52.381 0.00 0.00 0.00 3.33
6320 8528 2.814336 CCCTAAGTCTTCAGCCAACAAC 59.186 50.000 0.00 0.00 0.00 3.32
6326 8534 1.141657 TCTTCAGCCAACAACAGAGCT 59.858 47.619 0.00 0.00 35.52 4.09
6328 8536 1.597742 TCAGCCAACAACAGAGCTTC 58.402 50.000 0.00 0.00 31.93 3.86
6329 8537 1.141657 TCAGCCAACAACAGAGCTTCT 59.858 47.619 0.00 0.00 31.93 2.85
6330 8538 1.534595 CAGCCAACAACAGAGCTTCTC 59.465 52.381 0.00 0.00 31.93 2.87
6331 8539 1.419387 AGCCAACAACAGAGCTTCTCT 59.581 47.619 0.00 0.00 42.11 3.10
6340 8548 2.421751 AGAGCTTCTCTGCATGCAAT 57.578 45.000 22.88 1.55 39.62 3.56
6343 8551 1.135083 AGCTTCTCTGCATGCAATTGC 60.135 47.619 23.69 23.69 43.07 3.56
6344 8552 1.922570 CTTCTCTGCATGCAATTGCC 58.077 50.000 26.94 12.70 42.06 4.52
6345 8553 1.476891 CTTCTCTGCATGCAATTGCCT 59.523 47.619 26.94 15.36 42.06 4.75
6346 8554 1.100510 TCTCTGCATGCAATTGCCTC 58.899 50.000 26.94 15.77 42.06 4.70
6347 8555 1.103803 CTCTGCATGCAATTGCCTCT 58.896 50.000 26.94 9.55 42.06 3.69
6348 8556 2.092807 TCTCTGCATGCAATTGCCTCTA 60.093 45.455 26.94 9.36 42.06 2.43
6350 8558 2.022195 CTGCATGCAATTGCCTCTAGT 58.978 47.619 26.94 4.07 42.06 2.57
6351 8559 1.746787 TGCATGCAATTGCCTCTAGTG 59.253 47.619 26.94 15.76 42.06 2.74
6352 8560 2.019249 GCATGCAATTGCCTCTAGTGA 58.981 47.619 26.94 6.63 41.18 3.41
6353 8561 2.424601 GCATGCAATTGCCTCTAGTGAA 59.575 45.455 26.94 5.86 41.18 3.18
6354 8562 3.488721 GCATGCAATTGCCTCTAGTGAAG 60.489 47.826 26.94 4.60 41.18 3.02
6355 8563 3.423539 TGCAATTGCCTCTAGTGAAGT 57.576 42.857 26.94 0.00 41.18 3.01
6356 8564 4.551702 TGCAATTGCCTCTAGTGAAGTA 57.448 40.909 26.94 0.87 41.18 2.24
6357 8565 4.253685 TGCAATTGCCTCTAGTGAAGTAC 58.746 43.478 26.94 0.00 41.18 2.73
6358 8566 4.020218 TGCAATTGCCTCTAGTGAAGTACT 60.020 41.667 26.94 0.00 41.02 2.73
6359 8567 4.568760 GCAATTGCCTCTAGTGAAGTACTC 59.431 45.833 20.06 0.00 36.57 2.59
6360 8568 5.112686 CAATTGCCTCTAGTGAAGTACTCC 58.887 45.833 0.00 0.00 40.89 3.85
6361 8569 2.736347 TGCCTCTAGTGAAGTACTCCC 58.264 52.381 0.00 0.00 40.89 4.30
6362 8570 2.312140 TGCCTCTAGTGAAGTACTCCCT 59.688 50.000 0.00 0.00 40.89 4.20
6363 8571 2.953648 GCCTCTAGTGAAGTACTCCCTC 59.046 54.545 0.00 0.00 40.89 4.30
6364 8572 3.558033 CCTCTAGTGAAGTACTCCCTCC 58.442 54.545 0.00 0.00 40.89 4.30
6365 8573 3.207778 CTCTAGTGAAGTACTCCCTCCG 58.792 54.545 0.00 0.00 40.89 4.63
6366 8574 2.575279 TCTAGTGAAGTACTCCCTCCGT 59.425 50.000 0.00 0.00 40.89 4.69
6367 8575 2.305858 AGTGAAGTACTCCCTCCGTT 57.694 50.000 0.00 0.00 33.17 4.44
6368 8576 2.606378 AGTGAAGTACTCCCTCCGTTT 58.394 47.619 0.00 0.00 33.17 3.60
6369 8577 2.561858 AGTGAAGTACTCCCTCCGTTTC 59.438 50.000 0.00 0.00 33.17 2.78
6370 8578 2.298163 GTGAAGTACTCCCTCCGTTTCA 59.702 50.000 0.00 0.00 0.00 2.69
6371 8579 2.967201 TGAAGTACTCCCTCCGTTTCAA 59.033 45.455 0.00 0.00 0.00 2.69
6372 8580 3.388676 TGAAGTACTCCCTCCGTTTCAAA 59.611 43.478 0.00 0.00 0.00 2.69
6373 8581 4.141665 TGAAGTACTCCCTCCGTTTCAAAA 60.142 41.667 0.00 0.00 0.00 2.44
6374 8582 4.635699 AGTACTCCCTCCGTTTCAAAAT 57.364 40.909 0.00 0.00 0.00 1.82
6375 8583 5.750352 AGTACTCCCTCCGTTTCAAAATA 57.250 39.130 0.00 0.00 0.00 1.40
6376 8584 5.731591 AGTACTCCCTCCGTTTCAAAATAG 58.268 41.667 0.00 0.00 0.00 1.73
6377 8585 4.903045 ACTCCCTCCGTTTCAAAATAGA 57.097 40.909 0.00 0.00 0.00 1.98
6378 8586 5.437191 ACTCCCTCCGTTTCAAAATAGAT 57.563 39.130 0.00 0.00 0.00 1.98
6379 8587 5.186198 ACTCCCTCCGTTTCAAAATAGATG 58.814 41.667 0.00 0.00 0.00 2.90
6380 8588 5.045869 ACTCCCTCCGTTTCAAAATAGATGA 60.046 40.000 0.00 0.00 0.00 2.92
6381 8589 5.183228 TCCCTCCGTTTCAAAATAGATGAC 58.817 41.667 0.00 0.00 0.00 3.06
6382 8590 5.045869 TCCCTCCGTTTCAAAATAGATGACT 60.046 40.000 0.00 0.00 0.00 3.41
6383 8591 5.294552 CCCTCCGTTTCAAAATAGATGACTC 59.705 44.000 0.00 0.00 0.00 3.36
6384 8592 5.874810 CCTCCGTTTCAAAATAGATGACTCA 59.125 40.000 0.00 0.00 0.00 3.41
6385 8593 6.371548 CCTCCGTTTCAAAATAGATGACTCAA 59.628 38.462 0.00 0.00 0.00 3.02
6386 8594 7.129109 TCCGTTTCAAAATAGATGACTCAAC 57.871 36.000 0.00 0.00 0.00 3.18
6387 8595 6.934645 TCCGTTTCAAAATAGATGACTCAACT 59.065 34.615 0.00 0.00 0.00 3.16
6388 8596 7.444183 TCCGTTTCAAAATAGATGACTCAACTT 59.556 33.333 0.00 0.00 0.00 2.66
6389 8597 8.076178 CCGTTTCAAAATAGATGACTCAACTTT 58.924 33.333 0.00 0.00 0.00 2.66
6390 8598 8.895845 CGTTTCAAAATAGATGACTCAACTTTG 58.104 33.333 0.00 0.00 0.00 2.77
6391 8599 9.736023 GTTTCAAAATAGATGACTCAACTTTGT 57.264 29.630 0.00 0.00 0.00 2.83
6394 8602 8.999431 TCAAAATAGATGACTCAACTTTGTACC 58.001 33.333 0.00 0.00 0.00 3.34
6395 8603 8.783093 CAAAATAGATGACTCAACTTTGTACCA 58.217 33.333 0.00 0.00 0.00 3.25
6396 8604 8.918202 AAATAGATGACTCAACTTTGTACCAA 57.082 30.769 0.00 0.00 0.00 3.67
6397 8605 7.907214 ATAGATGACTCAACTTTGTACCAAC 57.093 36.000 0.00 0.00 0.00 3.77
6398 8606 5.930135 AGATGACTCAACTTTGTACCAACT 58.070 37.500 0.00 0.00 0.00 3.16
6399 8607 6.357367 AGATGACTCAACTTTGTACCAACTT 58.643 36.000 0.00 0.00 0.00 2.66
6400 8608 6.828785 AGATGACTCAACTTTGTACCAACTTT 59.171 34.615 0.00 0.00 0.00 2.66
6401 8609 6.189677 TGACTCAACTTTGTACCAACTTTG 57.810 37.500 0.00 0.00 0.00 2.77
6402 8610 5.708230 TGACTCAACTTTGTACCAACTTTGT 59.292 36.000 0.00 0.00 0.00 2.83
6403 8611 6.879993 TGACTCAACTTTGTACCAACTTTGTA 59.120 34.615 0.00 0.00 0.00 2.41
6404 8612 7.080353 ACTCAACTTTGTACCAACTTTGTAC 57.920 36.000 0.00 0.00 0.00 2.90
6405 8613 6.094464 ACTCAACTTTGTACCAACTTTGTACC 59.906 38.462 1.71 0.00 0.00 3.34
6406 8614 5.944599 TCAACTTTGTACCAACTTTGTACCA 59.055 36.000 1.71 0.00 0.00 3.25
6407 8615 6.433404 TCAACTTTGTACCAACTTTGTACCAA 59.567 34.615 1.71 0.00 0.00 3.67
6408 8616 7.122948 TCAACTTTGTACCAACTTTGTACCAAT 59.877 33.333 1.71 0.00 0.00 3.16
6409 8617 7.412853 ACTTTGTACCAACTTTGTACCAATT 57.587 32.000 1.71 0.00 0.00 2.32
6410 8618 7.262048 ACTTTGTACCAACTTTGTACCAATTG 58.738 34.615 0.00 0.00 0.00 2.32
6411 8619 5.189659 TGTACCAACTTTGTACCAATTGC 57.810 39.130 0.00 0.00 0.00 3.56
6412 8620 3.744238 ACCAACTTTGTACCAATTGCC 57.256 42.857 0.00 0.00 0.00 4.52
6413 8621 3.304829 ACCAACTTTGTACCAATTGCCT 58.695 40.909 0.00 0.00 0.00 4.75
6414 8622 3.320826 ACCAACTTTGTACCAATTGCCTC 59.679 43.478 0.00 0.00 0.00 4.70
6415 8623 3.306019 CCAACTTTGTACCAATTGCCTCC 60.306 47.826 0.00 0.00 0.00 4.30
6416 8624 2.159382 ACTTTGTACCAATTGCCTCCG 58.841 47.619 0.00 0.00 0.00 4.63
6417 8625 1.472480 CTTTGTACCAATTGCCTCCGG 59.528 52.381 0.00 0.00 0.00 5.14
6418 8626 0.693622 TTGTACCAATTGCCTCCGGA 59.306 50.000 2.93 2.93 0.00 5.14
6419 8627 0.251916 TGTACCAATTGCCTCCGGAG 59.748 55.000 25.36 25.36 0.00 4.63
6437 8645 2.695585 GAGGGAGTAGGATCCACCATT 58.304 52.381 15.82 4.24 41.52 3.16
6462 8670 4.019858 TGACCAGGACTGATGACTCTAAG 58.980 47.826 0.00 0.00 0.00 2.18
6499 8927 2.812178 GGCAAATTGCTGCAGCCG 60.812 61.111 34.64 18.55 44.28 5.52
6531 8959 0.535335 GGTTCACAGATACTCCCGCA 59.465 55.000 0.00 0.00 0.00 5.69
6559 8987 7.523293 ACATTCATCTTAACACATCCAACAA 57.477 32.000 0.00 0.00 0.00 2.83
6562 8990 7.439157 TTCATCTTAACACATCCAACAAGAG 57.561 36.000 0.00 0.00 0.00 2.85
6563 8991 5.939883 TCATCTTAACACATCCAACAAGAGG 59.060 40.000 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.535102 ACTTTCACTTGGGCCGACAG 60.535 55.000 0.00 0.00 0.00 3.51
1 2 0.817634 CACTTTCACTTGGGCCGACA 60.818 55.000 0.00 0.00 0.00 4.35
6 7 2.810852 CTCTTCTCACTTTCACTTGGGC 59.189 50.000 0.00 0.00 0.00 5.36
27 28 3.056536 GGATTTGGTCTTTTCCTTCTGCC 60.057 47.826 0.00 0.00 0.00 4.85
30 31 4.835056 CCTTGGATTTGGTCTTTTCCTTCT 59.165 41.667 0.00 0.00 0.00 2.85
33 34 3.897505 CACCTTGGATTTGGTCTTTTCCT 59.102 43.478 0.00 0.00 33.75 3.36
36 37 3.922375 TCCACCTTGGATTTGGTCTTTT 58.078 40.909 0.00 0.00 42.67 2.27
37 38 3.611025 TCCACCTTGGATTTGGTCTTT 57.389 42.857 0.00 0.00 42.67 2.52
65 66 1.983907 CGAGTGTCGAAGCATCACG 59.016 57.895 0.00 0.00 43.74 4.35
79 80 2.349817 CGAAGTTTCTTGCAATGCGAGT 60.350 45.455 20.77 2.34 40.65 4.18
82 83 2.314561 TCGAAGTTTCTTGCAATGCG 57.685 45.000 0.00 0.00 0.00 4.73
85 86 3.486383 TCCCTTCGAAGTTTCTTGCAAT 58.514 40.909 23.03 0.00 0.00 3.56
106 107 1.423921 ACCTCCTTTTGGGTCACGAAT 59.576 47.619 0.00 0.00 40.87 3.34
110 111 1.133915 TGACACCTCCTTTTGGGTCAC 60.134 52.381 0.00 0.00 40.87 3.67
113 114 2.965147 CAATTGACACCTCCTTTTGGGT 59.035 45.455 0.00 0.00 40.87 4.51
121 122 4.221703 TCTCTCTTCTCAATTGACACCTCC 59.778 45.833 3.38 0.00 0.00 4.30
142 143 4.273318 GCTTCCTCTCTTCTCTCTCTTCT 58.727 47.826 0.00 0.00 0.00 2.85
143 144 3.065371 CGCTTCCTCTCTTCTCTCTCTTC 59.935 52.174 0.00 0.00 0.00 2.87
144 145 3.016736 CGCTTCCTCTCTTCTCTCTCTT 58.983 50.000 0.00 0.00 0.00 2.85
145 146 2.238646 TCGCTTCCTCTCTTCTCTCTCT 59.761 50.000 0.00 0.00 0.00 3.10
146 147 2.354821 GTCGCTTCCTCTCTTCTCTCTC 59.645 54.545 0.00 0.00 0.00 3.20
147 148 2.290641 TGTCGCTTCCTCTCTTCTCTCT 60.291 50.000 0.00 0.00 0.00 3.10
148 149 2.088423 TGTCGCTTCCTCTCTTCTCTC 58.912 52.381 0.00 0.00 0.00 3.20
149 150 2.208132 TGTCGCTTCCTCTCTTCTCT 57.792 50.000 0.00 0.00 0.00 3.10
150 151 2.490115 TCTTGTCGCTTCCTCTCTTCTC 59.510 50.000 0.00 0.00 0.00 2.87
151 152 2.491693 CTCTTGTCGCTTCCTCTCTTCT 59.508 50.000 0.00 0.00 0.00 2.85
164 165 3.577649 TGCCTACTCTTTCTCTTGTCG 57.422 47.619 0.00 0.00 0.00 4.35
166 167 5.489792 TCATTGCCTACTCTTTCTCTTGT 57.510 39.130 0.00 0.00 0.00 3.16
170 171 4.873259 GTCCTTCATTGCCTACTCTTTCTC 59.127 45.833 0.00 0.00 0.00 2.87
186 187 3.009363 TCTTGATCAGGCATTGTCCTTCA 59.991 43.478 0.00 0.00 33.25 3.02
187 188 3.614092 TCTTGATCAGGCATTGTCCTTC 58.386 45.455 0.00 0.00 33.25 3.46
191 192 1.674962 GGCTCTTGATCAGGCATTGTC 59.325 52.381 15.62 0.00 36.45 3.18
192 193 1.005097 TGGCTCTTGATCAGGCATTGT 59.995 47.619 15.62 0.00 41.27 2.71
194 195 2.376109 CTTGGCTCTTGATCAGGCATT 58.624 47.619 9.99 0.00 45.15 3.56
195 196 1.409802 CCTTGGCTCTTGATCAGGCAT 60.410 52.381 9.99 0.00 45.15 4.40
197 198 0.254178 TCCTTGGCTCTTGATCAGGC 59.746 55.000 0.00 4.56 36.96 4.85
198 199 1.134159 CCTCCTTGGCTCTTGATCAGG 60.134 57.143 0.00 0.00 0.00 3.86
199 200 1.558756 ACCTCCTTGGCTCTTGATCAG 59.441 52.381 0.00 0.00 40.22 2.90
200 201 1.661463 ACCTCCTTGGCTCTTGATCA 58.339 50.000 0.00 0.00 40.22 2.92
201 202 3.034635 TCTACCTCCTTGGCTCTTGATC 58.965 50.000 0.00 0.00 40.22 2.92
202 203 3.037549 CTCTACCTCCTTGGCTCTTGAT 58.962 50.000 0.00 0.00 40.22 2.57
239 282 3.068873 GGCCTCATGATCTCTAGTTCGTT 59.931 47.826 0.00 0.00 0.00 3.85
241 284 2.625314 TGGCCTCATGATCTCTAGTTCG 59.375 50.000 3.32 0.00 0.00 3.95
245 288 3.640498 TCAGTTGGCCTCATGATCTCTAG 59.360 47.826 3.32 0.00 0.00 2.43
247 290 2.435069 CTCAGTTGGCCTCATGATCTCT 59.565 50.000 3.32 0.00 0.00 3.10
255 298 1.203441 ATCCTGCTCAGTTGGCCTCA 61.203 55.000 3.32 0.00 0.00 3.86
257 300 1.302285 CATCCTGCTCAGTTGGCCT 59.698 57.895 3.32 0.00 0.00 5.19
258 301 2.413142 GCATCCTGCTCAGTTGGCC 61.413 63.158 0.00 0.00 40.96 5.36
260 303 1.751927 GGGCATCCTGCTCAGTTGG 60.752 63.158 0.00 0.00 45.01 3.77
271 316 1.937191 TTTTCTTCTTGGGGGCATCC 58.063 50.000 0.00 0.00 0.00 3.51
291 336 4.758688 CTTCTTCTGCAACCAAACCTTTT 58.241 39.130 0.00 0.00 0.00 2.27
292 337 3.430790 GCTTCTTCTGCAACCAAACCTTT 60.431 43.478 0.00 0.00 0.00 3.11
293 338 2.101415 GCTTCTTCTGCAACCAAACCTT 59.899 45.455 0.00 0.00 0.00 3.50
294 339 1.683385 GCTTCTTCTGCAACCAAACCT 59.317 47.619 0.00 0.00 0.00 3.50
295 340 1.408702 TGCTTCTTCTGCAACCAAACC 59.591 47.619 0.00 0.00 37.51 3.27
304 349 5.225642 AGCATTAACTTTTGCTTCTTCTGC 58.774 37.500 0.00 0.00 46.71 4.26
313 358 2.159707 TCGCTCGAGCATTAACTTTTGC 60.160 45.455 34.69 6.30 42.21 3.68
341 386 5.718649 AACGGACAAACATAAGATGATCG 57.281 39.130 0.00 0.00 0.00 3.69
359 404 2.542824 CGGCCCTAATTATGCAAAACGG 60.543 50.000 0.00 0.00 0.00 4.44
361 406 3.630312 TCTCGGCCCTAATTATGCAAAAC 59.370 43.478 0.00 0.00 0.00 2.43
372 417 1.227943 GCATGCATCTCGGCCCTAA 60.228 57.895 14.21 0.00 0.00 2.69
375 420 4.881440 TGGCATGCATCTCGGCCC 62.881 66.667 21.36 0.00 45.83 5.80
384 429 1.107945 CATCTTGGACATGGCATGCA 58.892 50.000 26.70 14.93 0.00 3.96
385 430 0.249322 GCATCTTGGACATGGCATGC 60.249 55.000 26.70 18.39 0.00 4.06
386 431 0.030235 CGCATCTTGGACATGGCATG 59.970 55.000 25.31 25.31 0.00 4.06
387 432 0.107066 TCGCATCTTGGACATGGCAT 60.107 50.000 0.00 0.00 0.00 4.40
388 433 0.107066 ATCGCATCTTGGACATGGCA 60.107 50.000 0.00 0.00 0.00 4.92
389 434 1.027357 AATCGCATCTTGGACATGGC 58.973 50.000 0.00 0.00 0.00 4.40
390 435 2.019249 ACAATCGCATCTTGGACATGG 58.981 47.619 0.00 0.00 0.00 3.66
391 436 3.770263 AACAATCGCATCTTGGACATG 57.230 42.857 0.00 0.00 0.00 3.21
395 440 4.717991 CGTTAAAACAATCGCATCTTGGA 58.282 39.130 0.00 0.00 0.00 3.53
405 450 6.504180 GCGTACATCATTGCGTTAAAACAATC 60.504 38.462 0.00 0.00 34.32 2.67
409 454 3.540738 GGCGTACATCATTGCGTTAAAAC 59.459 43.478 0.00 0.00 0.00 2.43
414 459 1.701545 CCGGCGTACATCATTGCGTT 61.702 55.000 6.01 0.00 0.00 4.84
415 460 2.171079 CCGGCGTACATCATTGCGT 61.171 57.895 6.01 0.00 0.00 5.24
462 510 3.315191 GCGGATGGCAAAATAAAGCTAGA 59.685 43.478 0.00 0.00 42.87 2.43
478 526 4.556942 TCATCAAAATAGCAAGCGGATG 57.443 40.909 0.00 0.00 33.71 3.51
482 530 6.874297 TTTTCATCATCAAAATAGCAAGCG 57.126 33.333 0.00 0.00 0.00 4.68
505 557 6.056884 TCGGCCGGTTTTCTAATAAACATAT 58.943 36.000 27.83 0.00 39.27 1.78
513 565 2.425668 CCATTTCGGCCGGTTTTCTAAT 59.574 45.455 27.83 10.54 0.00 1.73
516 568 0.250989 TCCATTTCGGCCGGTTTTCT 60.251 50.000 27.83 1.17 33.14 2.52
517 569 0.815095 ATCCATTTCGGCCGGTTTTC 59.185 50.000 27.83 0.00 33.14 2.29
530 583 1.402787 GCCGACCCATTTGATCCATT 58.597 50.000 0.00 0.00 0.00 3.16
531 584 0.468029 GGCCGACCCATTTGATCCAT 60.468 55.000 0.00 0.00 0.00 3.41
536 589 2.075355 AACCAGGCCGACCCATTTGA 62.075 55.000 0.00 0.00 36.11 2.69
551 604 0.988832 ATTTCTAGGCCGTCCAACCA 59.011 50.000 0.00 0.00 33.74 3.67
553 606 0.733150 GCATTTCTAGGCCGTCCAAC 59.267 55.000 0.00 0.00 33.74 3.77
555 608 0.392461 GTGCATTTCTAGGCCGTCCA 60.392 55.000 0.00 0.00 33.74 4.02
556 609 1.429148 CGTGCATTTCTAGGCCGTCC 61.429 60.000 0.00 0.00 0.00 4.79
557 610 1.429148 CCGTGCATTTCTAGGCCGTC 61.429 60.000 0.00 0.00 0.00 4.79
559 612 1.153449 TCCGTGCATTTCTAGGCCG 60.153 57.895 0.00 0.00 0.00 6.13
560 613 0.392461 TGTCCGTGCATTTCTAGGCC 60.392 55.000 0.00 0.00 0.00 5.19
561 614 1.398390 CTTGTCCGTGCATTTCTAGGC 59.602 52.381 0.00 0.00 0.00 3.93
562 615 2.009774 CCTTGTCCGTGCATTTCTAGG 58.990 52.381 0.00 0.00 0.00 3.02
563 616 2.932614 CTCCTTGTCCGTGCATTTCTAG 59.067 50.000 0.00 0.00 0.00 2.43
564 617 2.935238 GCTCCTTGTCCGTGCATTTCTA 60.935 50.000 0.00 0.00 0.00 2.10
565 618 1.813513 CTCCTTGTCCGTGCATTTCT 58.186 50.000 0.00 0.00 0.00 2.52
566 619 0.169009 GCTCCTTGTCCGTGCATTTC 59.831 55.000 0.00 0.00 0.00 2.17
567 620 1.577328 CGCTCCTTGTCCGTGCATTT 61.577 55.000 0.00 0.00 0.00 2.32
568 621 2.034879 CGCTCCTTGTCCGTGCATT 61.035 57.895 0.00 0.00 0.00 3.56
569 622 2.434884 CGCTCCTTGTCCGTGCAT 60.435 61.111 0.00 0.00 0.00 3.96
570 623 3.158537 TTCGCTCCTTGTCCGTGCA 62.159 57.895 0.00 0.00 0.00 4.57
571 624 2.357034 TTCGCTCCTTGTCCGTGC 60.357 61.111 0.00 0.00 0.00 5.34
572 625 2.372690 CGTTCGCTCCTTGTCCGTG 61.373 63.158 0.00 0.00 0.00 4.94
573 626 2.049433 CGTTCGCTCCTTGTCCGT 60.049 61.111 0.00 0.00 0.00 4.69
574 627 3.479269 GCGTTCGCTCCTTGTCCG 61.479 66.667 9.99 0.00 0.00 4.79
575 628 3.119096 GGCGTTCGCTCCTTGTCC 61.119 66.667 16.40 0.00 0.00 4.02
576 629 3.479269 CGGCGTTCGCTCCTTGTC 61.479 66.667 16.40 0.00 0.00 3.18
587 640 2.047560 GTTGGTAGAGGCGGCGTT 60.048 61.111 9.37 0.00 0.00 4.84
590 643 1.095807 GGATTGTTGGTAGAGGCGGC 61.096 60.000 0.00 0.00 0.00 6.53
602 655 5.929992 TCGTCTTTTATTCGTCTGGATTGTT 59.070 36.000 0.00 0.00 0.00 2.83
603 656 5.475719 TCGTCTTTTATTCGTCTGGATTGT 58.524 37.500 0.00 0.00 0.00 2.71
605 658 8.712285 TTATTCGTCTTTTATTCGTCTGGATT 57.288 30.769 0.00 0.00 0.00 3.01
607 660 8.537049 TTTTATTCGTCTTTTATTCGTCTGGA 57.463 30.769 0.00 0.00 0.00 3.86
617 670 7.010367 ACGGACGCATATTTTATTCGTCTTTTA 59.990 33.333 15.56 0.00 45.93 1.52
622 675 4.703899 ACGGACGCATATTTTATTCGTC 57.296 40.909 10.02 10.02 45.94 4.20
624 677 4.144051 GCAAACGGACGCATATTTTATTCG 59.856 41.667 0.00 0.00 0.00 3.34
625 678 5.031578 TGCAAACGGACGCATATTTTATTC 58.968 37.500 0.00 0.00 31.95 1.75
627 680 4.624336 TGCAAACGGACGCATATTTTAT 57.376 36.364 0.00 0.00 31.95 1.40
628 681 4.624336 ATGCAAACGGACGCATATTTTA 57.376 36.364 5.98 0.00 46.73 1.52
641 694 4.734920 AACGCGCCGATGCAAACG 62.735 61.111 5.73 9.21 37.32 3.60
642 695 3.165318 CAACGCGCCGATGCAAAC 61.165 61.111 5.73 0.00 37.32 2.93
643 696 2.778551 CTTCAACGCGCCGATGCAAA 62.779 55.000 5.73 0.00 37.32 3.68
644 697 3.307505 CTTCAACGCGCCGATGCAA 62.308 57.895 5.73 0.00 37.32 4.08
647 700 1.509787 CAACTTCAACGCGCCGATG 60.510 57.895 5.73 7.88 0.00 3.84
648 701 1.666553 TCAACTTCAACGCGCCGAT 60.667 52.632 5.73 0.00 0.00 4.18
650 703 2.127758 GTCAACTTCAACGCGCCG 60.128 61.111 5.73 0.00 0.00 6.46
652 705 0.863144 TTAGGTCAACTTCAACGCGC 59.137 50.000 5.73 0.00 0.00 6.86
653 706 3.185594 TGAATTAGGTCAACTTCAACGCG 59.814 43.478 3.53 3.53 0.00 6.01
654 707 4.742438 TGAATTAGGTCAACTTCAACGC 57.258 40.909 0.00 0.00 0.00 4.84
663 716 5.845103 TCACTGTACGTTGAATTAGGTCAA 58.155 37.500 0.00 0.00 35.14 3.18
664 717 5.456548 TCACTGTACGTTGAATTAGGTCA 57.543 39.130 0.00 0.00 0.00 4.02
665 718 5.220416 GCATCACTGTACGTTGAATTAGGTC 60.220 44.000 0.00 0.00 0.00 3.85
666 719 4.630069 GCATCACTGTACGTTGAATTAGGT 59.370 41.667 0.00 0.00 0.00 3.08
667 720 4.034048 GGCATCACTGTACGTTGAATTAGG 59.966 45.833 0.00 0.00 0.00 2.69
668 721 4.629634 TGGCATCACTGTACGTTGAATTAG 59.370 41.667 0.00 0.00 0.00 1.73
669 722 4.390603 GTGGCATCACTGTACGTTGAATTA 59.609 41.667 0.00 0.00 40.58 1.40
670 723 3.188460 GTGGCATCACTGTACGTTGAATT 59.812 43.478 0.00 0.00 40.58 2.17
671 724 2.742053 GTGGCATCACTGTACGTTGAAT 59.258 45.455 0.00 0.00 40.58 2.57
673 726 1.790755 GTGGCATCACTGTACGTTGA 58.209 50.000 0.00 0.00 40.58 3.18
674 727 0.438445 CGTGGCATCACTGTACGTTG 59.562 55.000 0.00 0.00 41.53 4.10
675 728 1.289109 GCGTGGCATCACTGTACGTT 61.289 55.000 0.00 0.00 41.53 3.99
676 729 1.736645 GCGTGGCATCACTGTACGT 60.737 57.895 0.00 0.00 41.53 3.57
677 730 1.014044 AAGCGTGGCATCACTGTACG 61.014 55.000 0.00 0.00 41.53 3.67
678 731 0.443869 CAAGCGTGGCATCACTGTAC 59.556 55.000 0.00 0.00 41.53 2.90
679 732 0.673333 CCAAGCGTGGCATCACTGTA 60.673 55.000 5.51 0.00 41.53 2.74
680 733 1.968017 CCAAGCGTGGCATCACTGT 60.968 57.895 5.51 0.00 41.53 3.55
681 734 2.872557 CCAAGCGTGGCATCACTG 59.127 61.111 5.51 0.00 41.53 3.66
700 753 1.997606 GGTTTCCAGGTGATACGAACG 59.002 52.381 0.00 0.00 0.00 3.95
703 756 2.835156 TGATGGTTTCCAGGTGATACGA 59.165 45.455 0.00 0.00 36.75 3.43
704 757 2.936498 GTGATGGTTTCCAGGTGATACG 59.064 50.000 0.00 0.00 36.75 3.06
705 758 2.936498 CGTGATGGTTTCCAGGTGATAC 59.064 50.000 0.00 0.00 36.75 2.24
706 759 2.679639 GCGTGATGGTTTCCAGGTGATA 60.680 50.000 0.00 0.00 36.75 2.15
707 760 1.950484 GCGTGATGGTTTCCAGGTGAT 60.950 52.381 0.00 0.00 36.75 3.06
708 761 0.605319 GCGTGATGGTTTCCAGGTGA 60.605 55.000 0.00 0.00 36.75 4.02
712 765 1.026718 GGAGGCGTGATGGTTTCCAG 61.027 60.000 0.00 0.00 36.75 3.86
809 870 2.584608 GGTGAGGATGTGACGGGG 59.415 66.667 0.00 0.00 0.00 5.73
863 924 1.341156 AATGGGAGAGAGAAGCCCGG 61.341 60.000 0.00 0.00 45.08 5.73
1204 1305 4.803452 AGAACTGGAAAGGAACATTGGAA 58.197 39.130 0.00 0.00 0.00 3.53
1249 2070 8.235226 CGTCGTATGGTATGATTATGAAGTAGT 58.765 37.037 0.00 0.00 0.00 2.73
1256 2077 6.647212 ATTGCGTCGTATGGTATGATTATG 57.353 37.500 0.00 0.00 0.00 1.90
1257 2078 6.034577 CGAATTGCGTCGTATGGTATGATTAT 59.965 38.462 0.00 0.00 36.26 1.28
1258 2079 5.343860 CGAATTGCGTCGTATGGTATGATTA 59.656 40.000 0.00 0.00 36.26 1.75
1259 2080 4.149922 CGAATTGCGTCGTATGGTATGATT 59.850 41.667 0.00 0.00 36.26 2.57
1261 2082 3.047093 CGAATTGCGTCGTATGGTATGA 58.953 45.455 0.00 0.00 36.26 2.15
1262 2083 3.418281 CGAATTGCGTCGTATGGTATG 57.582 47.619 0.00 0.00 36.26 2.39
1353 2174 0.537188 CCCTAACACGAGCAGATGGT 59.463 55.000 0.00 0.00 0.00 3.55
1423 2252 8.892723 TGCGACAAAAATATATGAGAACTGAAT 58.107 29.630 0.00 0.00 0.00 2.57
1495 2338 7.369803 ACTACATTCACAAGCATGTTTAGAG 57.630 36.000 0.00 0.00 37.82 2.43
1722 2619 1.843368 CAGCAGTCATTTCCCCATGT 58.157 50.000 0.00 0.00 0.00 3.21
1744 2641 4.892934 AGCACCTTTGTCAAGAAAATACCA 59.107 37.500 0.00 0.00 30.57 3.25
1758 2655 2.890311 TGTGTTGGGATTAGCACCTTTG 59.110 45.455 0.00 0.00 31.68 2.77
1909 2807 4.394729 ACGGTCAACCTCATAACACAATT 58.605 39.130 0.00 0.00 0.00 2.32
1956 2854 2.252072 TTATCACTCCCGGGCTGCAC 62.252 60.000 18.49 0.00 0.00 4.57
2144 3068 2.898705 CTCCTTTCGATAGCAGCAGTT 58.101 47.619 0.00 0.00 0.00 3.16
2496 3420 2.408050 AGTTTCACGCACTCTAAGCAG 58.592 47.619 0.00 0.00 0.00 4.24
2784 3710 9.965824 AAGTATCAAGGTTTAAGAACAAACATG 57.034 29.630 0.00 0.00 39.65 3.21
2879 3808 6.351711 CACTCCAAGATTTCCATGAGACATA 58.648 40.000 0.00 0.00 0.00 2.29
2938 3867 8.718102 AAACAAGAAATACTACGATATGCACT 57.282 30.769 0.00 0.00 0.00 4.40
2939 3868 9.845305 GTAAACAAGAAATACTACGATATGCAC 57.155 33.333 0.00 0.00 0.00 4.57
2940 3869 9.811995 AGTAAACAAGAAATACTACGATATGCA 57.188 29.630 0.00 0.00 0.00 3.96
2944 3873 9.512435 GAGCAGTAAACAAGAAATACTACGATA 57.488 33.333 0.00 0.00 0.00 2.92
2945 3874 7.491696 GGAGCAGTAAACAAGAAATACTACGAT 59.508 37.037 0.00 0.00 0.00 3.73
2946 3875 6.810182 GGAGCAGTAAACAAGAAATACTACGA 59.190 38.462 0.00 0.00 0.00 3.43
2947 3876 6.812160 AGGAGCAGTAAACAAGAAATACTACG 59.188 38.462 0.00 0.00 0.00 3.51
2948 3877 8.549338 AAGGAGCAGTAAACAAGAAATACTAC 57.451 34.615 0.00 0.00 0.00 2.73
2949 3878 8.372459 TGAAGGAGCAGTAAACAAGAAATACTA 58.628 33.333 0.00 0.00 0.00 1.82
2950 3879 7.224297 TGAAGGAGCAGTAAACAAGAAATACT 58.776 34.615 0.00 0.00 0.00 2.12
2951 3880 7.173390 ACTGAAGGAGCAGTAAACAAGAAATAC 59.827 37.037 0.00 0.00 46.67 1.89
2952 3881 7.173218 CACTGAAGGAGCAGTAAACAAGAAATA 59.827 37.037 0.00 0.00 46.80 1.40
2953 3882 6.016777 CACTGAAGGAGCAGTAAACAAGAAAT 60.017 38.462 0.00 0.00 46.80 2.17
2954 3883 5.296780 CACTGAAGGAGCAGTAAACAAGAAA 59.703 40.000 0.00 0.00 46.80 2.52
2955 3884 4.816385 CACTGAAGGAGCAGTAAACAAGAA 59.184 41.667 0.00 0.00 46.80 2.52
2956 3885 4.380531 CACTGAAGGAGCAGTAAACAAGA 58.619 43.478 0.00 0.00 46.80 3.02
2957 3886 3.058639 GCACTGAAGGAGCAGTAAACAAG 60.059 47.826 0.00 0.00 46.80 3.16
2958 3887 2.878406 GCACTGAAGGAGCAGTAAACAA 59.122 45.455 0.00 0.00 46.80 2.83
2959 3888 2.158827 TGCACTGAAGGAGCAGTAAACA 60.159 45.455 0.00 0.00 46.80 2.83
2960 3889 2.494059 TGCACTGAAGGAGCAGTAAAC 58.506 47.619 0.00 0.00 46.80 2.01
2961 3890 2.928801 TGCACTGAAGGAGCAGTAAA 57.071 45.000 0.00 0.00 46.80 2.01
2962 3891 4.697514 GATATGCACTGAAGGAGCAGTAA 58.302 43.478 0.00 0.00 46.80 2.24
2963 3892 3.243535 CGATATGCACTGAAGGAGCAGTA 60.244 47.826 0.00 0.00 46.80 2.74
2965 3894 2.133553 CGATATGCACTGAAGGAGCAG 58.866 52.381 0.00 0.00 42.14 4.24
2966 3895 1.482182 ACGATATGCACTGAAGGAGCA 59.518 47.619 0.00 2.80 43.14 4.26
2967 3896 2.231215 ACGATATGCACTGAAGGAGC 57.769 50.000 0.00 0.00 0.00 4.70
2968 3897 4.576216 ACTACGATATGCACTGAAGGAG 57.424 45.455 0.00 0.00 0.00 3.69
2969 3898 6.650427 AATACTACGATATGCACTGAAGGA 57.350 37.500 0.00 0.00 0.00 3.36
2970 3899 7.148641 AGAAATACTACGATATGCACTGAAGG 58.851 38.462 0.00 0.00 0.00 3.46
2971 3900 8.483218 CAAGAAATACTACGATATGCACTGAAG 58.517 37.037 0.00 0.00 0.00 3.02
2972 3901 7.979537 ACAAGAAATACTACGATATGCACTGAA 59.020 33.333 0.00 0.00 0.00 3.02
2973 3902 7.489160 ACAAGAAATACTACGATATGCACTGA 58.511 34.615 0.00 0.00 0.00 3.41
2974 3903 7.700322 ACAAGAAATACTACGATATGCACTG 57.300 36.000 0.00 0.00 0.00 3.66
2975 3904 8.718102 AAACAAGAAATACTACGATATGCACT 57.282 30.769 0.00 0.00 0.00 4.40
2976 3905 9.845305 GTAAACAAGAAATACTACGATATGCAC 57.155 33.333 0.00 0.00 0.00 4.57
2977 3906 9.811995 AGTAAACAAGAAATACTACGATATGCA 57.188 29.630 0.00 0.00 0.00 3.96
2981 3910 9.512435 GAGCAGTAAACAAGAAATACTACGATA 57.488 33.333 0.00 0.00 0.00 2.92
2982 3911 7.491696 GGAGCAGTAAACAAGAAATACTACGAT 59.508 37.037 0.00 0.00 0.00 3.73
2983 3912 6.810182 GGAGCAGTAAACAAGAAATACTACGA 59.190 38.462 0.00 0.00 0.00 3.43
2984 3913 6.812160 AGGAGCAGTAAACAAGAAATACTACG 59.188 38.462 0.00 0.00 0.00 3.51
2985 3914 8.549338 AAGGAGCAGTAAACAAGAAATACTAC 57.451 34.615 0.00 0.00 0.00 2.73
2986 3915 8.372459 TGAAGGAGCAGTAAACAAGAAATACTA 58.628 33.333 0.00 0.00 0.00 1.82
2987 3916 7.224297 TGAAGGAGCAGTAAACAAGAAATACT 58.776 34.615 0.00 0.00 0.00 2.12
2988 3917 7.173390 ACTGAAGGAGCAGTAAACAAGAAATAC 59.827 37.037 0.00 0.00 46.67 1.89
2989 3918 7.173218 CACTGAAGGAGCAGTAAACAAGAAATA 59.827 37.037 0.00 0.00 46.80 1.40
2990 3919 6.016777 CACTGAAGGAGCAGTAAACAAGAAAT 60.017 38.462 0.00 0.00 46.80 2.17
2991 3920 5.296780 CACTGAAGGAGCAGTAAACAAGAAA 59.703 40.000 0.00 0.00 46.80 2.52
2992 3921 4.816385 CACTGAAGGAGCAGTAAACAAGAA 59.184 41.667 0.00 0.00 46.80 2.52
2993 3922 4.380531 CACTGAAGGAGCAGTAAACAAGA 58.619 43.478 0.00 0.00 46.80 3.02
2994 3923 3.058639 GCACTGAAGGAGCAGTAAACAAG 60.059 47.826 0.00 0.00 46.80 3.16
2995 3924 2.878406 GCACTGAAGGAGCAGTAAACAA 59.122 45.455 0.00 0.00 46.80 2.83
2996 3925 2.158827 TGCACTGAAGGAGCAGTAAACA 60.159 45.455 0.00 0.00 46.80 2.83
2997 3926 2.494059 TGCACTGAAGGAGCAGTAAAC 58.506 47.619 0.00 0.00 46.80 2.01
2998 3927 2.928801 TGCACTGAAGGAGCAGTAAA 57.071 45.000 0.00 0.00 46.80 2.01
2999 3928 4.697514 GATATGCACTGAAGGAGCAGTAA 58.302 43.478 0.00 0.00 46.80 2.24
3000 3929 3.243535 CGATATGCACTGAAGGAGCAGTA 60.244 47.826 0.00 0.00 46.80 2.74
3002 3931 2.133553 CGATATGCACTGAAGGAGCAG 58.866 52.381 0.00 0.00 42.14 4.24
3003 3932 1.482182 ACGATATGCACTGAAGGAGCA 59.518 47.619 0.00 2.80 43.14 4.26
3004 3933 2.231215 ACGATATGCACTGAAGGAGC 57.769 50.000 0.00 0.00 0.00 4.70
3005 3934 4.576216 ACTACGATATGCACTGAAGGAG 57.424 45.455 0.00 0.00 0.00 3.69
3006 3935 6.264518 TGAATACTACGATATGCACTGAAGGA 59.735 38.462 0.00 0.00 0.00 3.36
3007 3936 6.447162 TGAATACTACGATATGCACTGAAGG 58.553 40.000 0.00 0.00 0.00 3.46
3008 3937 7.930513 TTGAATACTACGATATGCACTGAAG 57.069 36.000 0.00 0.00 0.00 3.02
3010 3939 9.573133 CATATTGAATACTACGATATGCACTGA 57.427 33.333 0.00 0.00 36.19 3.41
3011 3940 9.358872 ACATATTGAATACTACGATATGCACTG 57.641 33.333 0.00 0.00 41.82 3.66
3134 4063 0.252057 TTCCGTCCAGATGACCTCCA 60.252 55.000 0.00 0.00 41.18 3.86
3151 4080 6.054295 ACAGATCTCAGCAATAGGTTCATTC 58.946 40.000 0.00 0.00 0.00 2.67
3157 4086 3.199508 AGCAACAGATCTCAGCAATAGGT 59.800 43.478 11.76 0.00 0.00 3.08
3293 4222 7.254932 GGCTTGTGATATGTCTAGATCCAAAAC 60.255 40.741 0.00 0.00 0.00 2.43
3303 4232 5.189736 AGTTCTTGGGCTTGTGATATGTCTA 59.810 40.000 0.00 0.00 0.00 2.59
3466 4396 1.696336 CAGGTCAGGGTATGGAGGATG 59.304 57.143 0.00 0.00 0.00 3.51
3478 4408 0.895559 GGTTTCCCAAGCAGGTCAGG 60.896 60.000 0.00 0.00 34.66 3.86
3580 4510 6.430925 CCATTTGTCACTCCTACATCAGAAAA 59.569 38.462 0.00 0.00 0.00 2.29
3585 4515 3.054434 CCCCATTTGTCACTCCTACATCA 60.054 47.826 0.00 0.00 0.00 3.07
3711 4648 7.763985 TGATTAGAGTTTGATTATTGCGTCTGA 59.236 33.333 0.00 0.00 0.00 3.27
3712 4649 7.909267 TGATTAGAGTTTGATTATTGCGTCTG 58.091 34.615 0.00 0.00 0.00 3.51
3829 4766 6.655425 GCTTTCCATCTTATAGTTATGTCCCC 59.345 42.308 0.00 0.00 0.00 4.81
3844 4781 8.878211 TCAAATCTCATATCTAGCTTTCCATCT 58.122 33.333 0.00 0.00 0.00 2.90
3908 4845 7.003482 TCGATGAAATGATTCCAAATATCCCA 58.997 34.615 0.00 0.00 34.49 4.37
3973 4910 6.370442 CACAAGGACACGAATTACTTCCATAA 59.630 38.462 0.00 0.00 0.00 1.90
3976 4913 4.062293 CACAAGGACACGAATTACTTCCA 58.938 43.478 0.00 0.00 0.00 3.53
3990 4927 7.819900 ACTAAGATGACATTCTAACACAAGGAC 59.180 37.037 0.00 0.00 0.00 3.85
4037 4974 8.964476 TTTCTCCTATTAATAGAAACAGCTGG 57.036 34.615 21.75 4.92 35.02 4.85
4211 5148 3.916172 CCTCAGAACACAATTTTGATGCG 59.084 43.478 0.00 0.00 0.00 4.73
4262 5199 4.380531 CAACAGCTTGTTCAGTAAGAGGA 58.619 43.478 0.00 0.00 38.77 3.71
4302 5239 6.646653 ACGACTGTGATGTATTAGCAATATGG 59.353 38.462 0.00 0.00 0.00 2.74
4444 6343 6.059484 GGAATAACGGATGTCTTATTTCCCA 58.941 40.000 0.00 0.00 0.00 4.37
4481 6380 4.973168 ACAGAAAAGTAAGATGCCACAGA 58.027 39.130 0.00 0.00 0.00 3.41
4516 6416 5.126067 TGCCCTGCATTATTAAGAGAACTC 58.874 41.667 0.00 0.00 31.71 3.01
4533 6433 1.679139 TTGTCACTTGACTTGCCCTG 58.321 50.000 10.63 0.00 44.99 4.45
4614 6514 5.760253 CCTCTGTATAGAATTTTGATGCGGT 59.240 40.000 0.00 0.00 31.21 5.68
4730 6630 8.726988 TGCTCCATTTGTGTTAACTAGTTAATC 58.273 33.333 26.49 21.79 37.37 1.75
4790 6690 2.038387 AAAGACCACGAAGCACAACT 57.962 45.000 0.00 0.00 0.00 3.16
4884 6784 2.225019 GTGCTTCACCACACTTCAGATG 59.775 50.000 0.00 0.00 35.80 2.90
4973 6873 1.140252 GACATAAGGGCGGCTCCTTTA 59.860 52.381 22.16 7.37 44.14 1.85
5128 7029 1.293924 CATCTCCTTGCTGTTAGGCG 58.706 55.000 0.00 0.00 32.59 5.52
5137 7038 1.823041 GCCTCCTGCATCTCCTTGC 60.823 63.158 0.00 0.00 43.07 4.01
5187 7088 6.851222 ATCAACCGTTGAAGAATAGCTATG 57.149 37.500 17.64 0.00 43.95 2.23
5225 7126 9.998106 ATGGTCCATAATATCACTACTGTTTAC 57.002 33.333 1.24 0.00 0.00 2.01
5414 7317 4.805192 CCAGGTTGTTTCATTTTCACACAG 59.195 41.667 0.00 0.00 0.00 3.66
5467 7372 1.001706 TCTCAGTCCTTTCACACGACG 60.002 52.381 0.00 0.00 0.00 5.12
5479 7384 6.385033 CAACAGGAATTTGAAATCTCAGTCC 58.615 40.000 0.00 0.00 32.69 3.85
5520 7429 1.004745 TCCTTCCTCATTGCCTCAACC 59.995 52.381 0.00 0.00 0.00 3.77
5688 7606 2.288395 CCAGCATCCAAAGAGCGTTTTT 60.288 45.455 0.00 0.00 0.00 1.94
5792 7711 5.177327 CGGAAAACCAATGAAAACATCCAAG 59.823 40.000 0.00 0.00 0.00 3.61
5850 7769 3.450457 AGGATCCACTAGAGTTGCTCTTG 59.550 47.826 15.82 5.16 41.50 3.02
5865 7881 3.565764 ATCGAAATTCTGCAGGATCCA 57.434 42.857 15.82 0.00 0.00 3.41
5947 8154 5.123227 TGTAGCACCAGAAATATACCTTGC 58.877 41.667 0.00 0.00 0.00 4.01
5955 8162 7.361713 CCGAAAGAAAATGTAGCACCAGAAATA 60.362 37.037 0.00 0.00 0.00 1.40
6069 8276 0.685097 TGTGGTTAGGTGCTCCTCAC 59.315 55.000 11.38 13.59 43.94 3.51
6077 8284 4.007659 GGGTAGACATTTGTGGTTAGGTG 58.992 47.826 0.00 0.00 0.00 4.00
6098 8305 1.064825 AGGTGTTTCCCTACCACAGG 58.935 55.000 0.00 0.00 45.07 4.00
6105 8312 3.012047 TGTCTAGGCTAGGTGTTTCCCTA 59.988 47.826 20.92 0.00 35.97 3.53
6181 8389 7.997803 AGATTAAGGAGATGGAGGAATCTTTTG 59.002 37.037 0.00 0.00 37.03 2.44
6190 8398 4.904251 TCAAGGAGATTAAGGAGATGGAGG 59.096 45.833 0.00 0.00 0.00 4.30
6214 8422 2.693591 GGAGGATCTTATGGTGTCGTCA 59.306 50.000 0.00 0.00 33.73 4.35
6235 8443 6.091169 GGTGAAAAATATCAATTGTGTGGCAG 59.909 38.462 5.13 0.00 0.00 4.85
6236 8444 5.931146 GGTGAAAAATATCAATTGTGTGGCA 59.069 36.000 5.13 0.00 0.00 4.92
6269 8477 6.147581 ACATCTTCATATTGCATCGAATTGC 58.852 36.000 4.01 4.01 43.07 3.56
6270 8478 7.358105 GCAACATCTTCATATTGCATCGAATTG 60.358 37.037 3.06 0.00 45.38 2.32
6271 8479 6.639686 GCAACATCTTCATATTGCATCGAATT 59.360 34.615 3.06 0.00 45.38 2.17
6272 8480 6.147581 GCAACATCTTCATATTGCATCGAAT 58.852 36.000 3.06 0.00 45.38 3.34
6273 8481 5.513376 GCAACATCTTCATATTGCATCGAA 58.487 37.500 3.06 0.00 45.38 3.71
6274 8482 5.099484 GCAACATCTTCATATTGCATCGA 57.901 39.130 3.06 0.00 45.38 3.59
6293 8501 1.271379 GCTGAAGACTTAGGGGTGCAA 60.271 52.381 0.00 0.00 0.00 4.08
6294 8502 0.324943 GCTGAAGACTTAGGGGTGCA 59.675 55.000 0.00 0.00 0.00 4.57
6302 8510 4.380531 CTCTGTTGTTGGCTGAAGACTTA 58.619 43.478 0.00 0.00 0.00 2.24
6332 8540 2.019249 TCACTAGAGGCAATTGCATGC 58.981 47.619 30.32 18.42 45.67 4.06
6334 8542 3.960571 ACTTCACTAGAGGCAATTGCAT 58.039 40.909 30.32 25.28 44.36 3.96
6336 8544 4.508662 AGTACTTCACTAGAGGCAATTGC 58.491 43.478 22.47 22.47 34.98 3.56
6337 8545 5.112686 GGAGTACTTCACTAGAGGCAATTG 58.887 45.833 0.00 0.00 37.72 2.32
6338 8546 4.162509 GGGAGTACTTCACTAGAGGCAATT 59.837 45.833 2.92 0.00 37.72 2.32
6340 8548 3.097614 GGGAGTACTTCACTAGAGGCAA 58.902 50.000 2.92 0.00 37.72 4.52
6343 8551 3.558033 GGAGGGAGTACTTCACTAGAGG 58.442 54.545 2.92 0.00 40.54 3.69
6344 8552 3.207778 CGGAGGGAGTACTTCACTAGAG 58.792 54.545 2.92 0.00 40.54 2.43
6345 8553 2.575279 ACGGAGGGAGTACTTCACTAGA 59.425 50.000 2.92 0.00 40.54 2.43
6346 8554 3.002038 ACGGAGGGAGTACTTCACTAG 57.998 52.381 2.92 1.71 40.54 2.57
6347 8555 3.446442 AACGGAGGGAGTACTTCACTA 57.554 47.619 2.92 0.00 40.54 2.74
6348 8556 2.305858 AACGGAGGGAGTACTTCACT 57.694 50.000 2.92 0.00 44.17 3.41
6350 8558 2.600790 TGAAACGGAGGGAGTACTTCA 58.399 47.619 2.92 0.00 0.00 3.02
6351 8559 3.672767 TTGAAACGGAGGGAGTACTTC 57.327 47.619 0.00 0.00 0.00 3.01
6352 8560 4.426736 TTTTGAAACGGAGGGAGTACTT 57.573 40.909 0.00 0.00 0.00 2.24
6353 8561 4.635699 ATTTTGAAACGGAGGGAGTACT 57.364 40.909 0.00 0.00 0.00 2.73
6354 8562 5.727434 TCTATTTTGAAACGGAGGGAGTAC 58.273 41.667 0.00 0.00 0.00 2.73
6355 8563 6.155565 TCATCTATTTTGAAACGGAGGGAGTA 59.844 38.462 0.00 0.00 0.00 2.59
6356 8564 4.903045 TCTATTTTGAAACGGAGGGAGT 57.097 40.909 0.00 0.00 0.00 3.85
6357 8565 5.294552 GTCATCTATTTTGAAACGGAGGGAG 59.705 44.000 0.00 0.00 0.00 4.30
6358 8566 5.045869 AGTCATCTATTTTGAAACGGAGGGA 60.046 40.000 0.00 0.00 0.00 4.20
6359 8567 5.186198 AGTCATCTATTTTGAAACGGAGGG 58.814 41.667 0.00 0.00 0.00 4.30
6360 8568 5.874810 TGAGTCATCTATTTTGAAACGGAGG 59.125 40.000 0.00 0.00 0.00 4.30
6361 8569 6.968131 TGAGTCATCTATTTTGAAACGGAG 57.032 37.500 0.00 0.00 0.00 4.63
6362 8570 6.934645 AGTTGAGTCATCTATTTTGAAACGGA 59.065 34.615 1.70 0.00 0.00 4.69
6363 8571 7.133891 AGTTGAGTCATCTATTTTGAAACGG 57.866 36.000 1.70 0.00 0.00 4.44
6364 8572 8.895845 CAAAGTTGAGTCATCTATTTTGAAACG 58.104 33.333 4.14 0.00 38.91 3.60
6365 8573 9.736023 ACAAAGTTGAGTCATCTATTTTGAAAC 57.264 29.630 15.99 0.00 38.91 2.78
6368 8576 8.999431 GGTACAAAGTTGAGTCATCTATTTTGA 58.001 33.333 15.99 3.46 38.91 2.69
6369 8577 8.783093 TGGTACAAAGTTGAGTCATCTATTTTG 58.217 33.333 4.14 8.00 40.82 2.44
6370 8578 8.918202 TGGTACAAAGTTGAGTCATCTATTTT 57.082 30.769 4.14 0.00 31.92 1.82
6380 8588 8.229461 TGGTACAAAGTTGGTACAAAGTTGAGT 61.229 37.037 19.89 8.51 42.21 3.41
6381 8589 6.094325 TGGTACAAAGTTGGTACAAAGTTGAG 59.906 38.462 19.89 3.33 42.21 3.02
6382 8590 5.944599 TGGTACAAAGTTGGTACAAAGTTGA 59.055 36.000 19.89 0.00 42.21 3.18
6383 8591 6.197364 TGGTACAAAGTTGGTACAAAGTTG 57.803 37.500 19.89 4.60 42.21 3.16
6384 8592 6.837471 TTGGTACAAAGTTGGTACAAAGTT 57.163 33.333 19.89 0.00 46.73 2.66
6385 8593 7.262048 CAATTGGTACAAAGTTGGTACAAAGT 58.738 34.615 19.89 12.74 46.73 2.66
6386 8594 6.200097 GCAATTGGTACAAAGTTGGTACAAAG 59.800 38.462 19.89 7.49 46.73 2.77
6387 8595 6.043411 GCAATTGGTACAAAGTTGGTACAAA 58.957 36.000 19.89 16.05 46.73 2.83
6388 8596 5.452077 GGCAATTGGTACAAAGTTGGTACAA 60.452 40.000 19.89 8.12 46.73 2.41
6394 8602 6.628642 CCGGAGGCAATTGGTACAAAGTTG 62.629 50.000 7.72 0.00 45.03 3.16
6395 8603 4.620131 CCGGAGGCAATTGGTACAAAGTT 61.620 47.826 7.72 0.00 45.03 2.66
6396 8604 3.139263 CCGGAGGCAATTGGTACAAAGT 61.139 50.000 7.72 0.00 45.03 2.66
6397 8605 1.472480 CCGGAGGCAATTGGTACAAAG 59.528 52.381 7.72 0.00 45.03 2.77
6398 8606 1.540267 CCGGAGGCAATTGGTACAAA 58.460 50.000 7.72 0.00 45.03 2.83
6399 8607 3.257935 CCGGAGGCAATTGGTACAA 57.742 52.632 7.72 0.00 45.03 2.41
6413 8621 0.997307 TGGATCCTACTCCCTCCGGA 60.997 60.000 14.23 2.93 34.12 5.14
6414 8622 0.828343 GTGGATCCTACTCCCTCCGG 60.828 65.000 14.23 0.00 34.12 5.14
6415 8623 0.828343 GGTGGATCCTACTCCCTCCG 60.828 65.000 14.23 0.00 34.12 4.63
6416 8624 0.264955 TGGTGGATCCTACTCCCTCC 59.735 60.000 14.23 3.57 37.07 4.30
6417 8625 2.407340 ATGGTGGATCCTACTCCCTC 57.593 55.000 14.23 0.00 37.07 4.30
6418 8626 2.897823 AATGGTGGATCCTACTCCCT 57.102 50.000 14.23 1.08 37.07 4.20
6419 8627 3.325135 CACTAATGGTGGATCCTACTCCC 59.675 52.174 14.23 5.74 41.90 4.30
6420 8628 4.039366 GTCACTAATGGTGGATCCTACTCC 59.961 50.000 14.23 10.57 45.38 3.85
6421 8629 4.039366 GGTCACTAATGGTGGATCCTACTC 59.961 50.000 14.23 4.93 45.38 2.59
6422 8630 3.967987 GGTCACTAATGGTGGATCCTACT 59.032 47.826 14.23 0.00 45.38 2.57
6423 8631 3.709653 TGGTCACTAATGGTGGATCCTAC 59.290 47.826 14.23 9.39 45.38 3.18
6424 8632 3.967326 CTGGTCACTAATGGTGGATCCTA 59.033 47.826 14.23 0.00 45.38 2.94
6425 8633 2.774234 CTGGTCACTAATGGTGGATCCT 59.226 50.000 14.23 0.00 45.38 3.24
6426 8634 2.158755 CCTGGTCACTAATGGTGGATCC 60.159 54.545 4.20 4.20 45.38 3.36
6427 8635 2.771943 TCCTGGTCACTAATGGTGGATC 59.228 50.000 0.00 0.00 45.38 3.36
6428 8636 2.505819 GTCCTGGTCACTAATGGTGGAT 59.494 50.000 0.00 0.00 45.38 3.41
6429 8637 1.906574 GTCCTGGTCACTAATGGTGGA 59.093 52.381 0.00 0.00 45.38 4.02
6430 8638 1.909302 AGTCCTGGTCACTAATGGTGG 59.091 52.381 0.00 0.00 45.38 4.61
6431 8639 2.567169 TCAGTCCTGGTCACTAATGGTG 59.433 50.000 0.00 0.00 46.60 4.17
6432 8640 2.902608 TCAGTCCTGGTCACTAATGGT 58.097 47.619 0.00 0.00 0.00 3.55
6437 8645 3.010696 AGAGTCATCAGTCCTGGTCACTA 59.989 47.826 0.00 0.00 0.00 2.74
6499 8927 4.469657 TCTGTGAACCATAATATTGGGGC 58.530 43.478 11.37 5.15 41.35 5.80
6531 8959 7.943079 TGGATGTGTTAAGATGAATGTTGAT 57.057 32.000 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.