Multiple sequence alignment - TraesCS4D01G021200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G021200 chr4D 100.000 3248 0 0 1 3248 9182905 9186152 0.000000e+00 5999.0
1 TraesCS4D01G021200 chr4A 90.239 2551 131 42 112 2614 594285202 594282722 0.000000e+00 3223.0
2 TraesCS4D01G021200 chr4A 97.778 90 1 1 1 90 594285280 594285192 1.560000e-33 154.0
3 TraesCS4D01G021200 chr4B 91.835 1433 72 15 976 2371 17061217 17062641 0.000000e+00 1956.0
4 TraesCS4D01G021200 chr4B 86.300 781 61 24 1 766 17060375 17061124 0.000000e+00 808.0
5 TraesCS4D01G021200 chr4B 92.941 85 0 3 2530 2614 17062777 17062855 5.690000e-23 119.0
6 TraesCS4D01G021200 chr4B 92.308 52 4 0 794 845 119262163 119262112 1.250000e-09 75.0
7 TraesCS4D01G021200 chr3B 82.517 429 57 12 2824 3242 642817572 642817992 8.570000e-96 361.0
8 TraesCS4D01G021200 chr3B 77.828 442 73 15 2819 3242 104720868 104721302 1.930000e-62 250.0
9 TraesCS4D01G021200 chr3B 78.495 372 61 9 2888 3242 190475576 190475945 3.260000e-55 226.0
10 TraesCS4D01G021200 chr3B 78.495 372 61 9 2888 3242 190476861 190477230 3.260000e-55 226.0
11 TraesCS4D01G021200 chr3D 82.135 431 61 7 2824 3242 5415063 5414637 3.990000e-94 355.0
12 TraesCS4D01G021200 chr7B 81.860 430 63 10 2824 3242 706247278 706246853 6.670000e-92 348.0
13 TraesCS4D01G021200 chr5A 81.585 429 71 5 2822 3242 487355289 487355717 6.670000e-92 348.0
14 TraesCS4D01G021200 chr5D 83.844 359 49 7 2890 3241 521097566 521097210 1.870000e-87 333.0
15 TraesCS4D01G021200 chr5D 80.734 436 63 13 2821 3242 118004861 118005289 1.450000e-83 320.0
16 TraesCS4D01G021200 chr5D 91.489 47 4 0 797 843 37026007 37026053 7.520000e-07 65.8
17 TraesCS4D01G021200 chr6B 81.062 433 67 8 2822 3242 276749337 276748908 6.720000e-87 331.0
18 TraesCS4D01G021200 chr6B 81.638 403 65 4 2849 3244 408698279 408698679 3.130000e-85 326.0
19 TraesCS4D01G021200 chr6B 90.566 53 5 0 796 848 646201763 646201711 1.620000e-08 71.3
20 TraesCS4D01G021200 chr1A 78.824 425 80 7 2822 3239 63732387 63732808 8.880000e-71 278.0
21 TraesCS4D01G021200 chr2D 76.256 438 82 14 2823 3242 15814625 15815058 2.540000e-51 213.0
22 TraesCS4D01G021200 chr2B 93.878 49 3 0 797 845 169856187 169856235 1.250000e-09 75.0
23 TraesCS4D01G021200 chr2B 92.157 51 4 0 798 848 758596316 758596266 4.500000e-09 73.1
24 TraesCS4D01G021200 chr2A 95.122 41 2 0 797 837 650104988 650105028 7.520000e-07 65.8
25 TraesCS4D01G021200 chr5B 97.222 36 1 0 799 834 339860225 339860190 9.730000e-06 62.1
26 TraesCS4D01G021200 chr1B 90.909 44 3 1 800 843 420234661 420234619 1.260000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G021200 chr4D 9182905 9186152 3247 False 5999.0 5999 100.000000 1 3248 1 chr4D.!!$F1 3247
1 TraesCS4D01G021200 chr4A 594282722 594285280 2558 True 1688.5 3223 94.008500 1 2614 2 chr4A.!!$R1 2613
2 TraesCS4D01G021200 chr4B 17060375 17062855 2480 False 961.0 1956 90.358667 1 2614 3 chr4B.!!$F1 2613
3 TraesCS4D01G021200 chr3B 190475576 190477230 1654 False 226.0 226 78.495000 2888 3242 2 chr3B.!!$F3 354

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
272 302 0.322546 GGCCGATTCATGGGGGTATC 60.323 60.0 0.0 0.0 0.0 2.24 F
589 628 0.383949 GTTGTTTGAGCGGGCTGAAA 59.616 50.0 0.0 0.0 0.0 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1643 1734 0.459585 GTCCATTCGCTAGCGGAACA 60.460 55.0 34.76 14.84 40.25 3.18 R
2458 2600 0.467804 TGTGTGGAGCAAGTGCAGTA 59.532 50.0 6.00 0.00 45.16 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
239 269 1.409427 GATTCGTTCGATGGGGTCTCT 59.591 52.381 0.00 0.00 0.00 3.10
240 270 0.815734 TTCGTTCGATGGGGTCTCTC 59.184 55.000 0.00 0.00 0.00 3.20
241 271 1.064296 CGTTCGATGGGGTCTCTCG 59.936 63.158 0.00 0.00 0.00 4.04
242 272 1.227002 GTTCGATGGGGTCTCTCGC 60.227 63.158 0.00 0.00 32.62 5.03
244 274 1.667154 TTCGATGGGGTCTCTCGCTG 61.667 60.000 0.00 0.00 32.62 5.18
245 275 2.107953 GATGGGGTCTCTCGCTGC 59.892 66.667 0.00 0.00 0.00 5.25
248 278 4.500116 GGGGTCTCTCGCTGCGTC 62.500 72.222 22.48 8.37 0.00 5.19
249 279 4.500116 GGGTCTCTCGCTGCGTCC 62.500 72.222 22.48 15.82 0.00 4.79
272 302 0.322546 GGCCGATTCATGGGGGTATC 60.323 60.000 0.00 0.00 0.00 2.24
285 315 2.125961 GGTATCCTGTCGGCGTCCT 61.126 63.158 6.85 0.00 0.00 3.85
294 324 3.770040 CGGCGTCCTGGTGATCCA 61.770 66.667 0.00 0.00 42.05 3.41
350 380 2.254464 GCGCTCGGAATTGGATCCC 61.254 63.158 9.90 0.00 36.00 3.85
442 480 8.897872 AATTGATTCAGCAATTCAATATTCCC 57.102 30.769 0.00 0.00 43.03 3.97
559 598 9.730705 TGATGAATATTCTTCTGTGGATAATCC 57.269 33.333 24.08 0.00 33.73 3.01
589 628 0.383949 GTTGTTTGAGCGGGCTGAAA 59.616 50.000 0.00 0.00 0.00 2.69
605 645 5.306394 GGCTGAAAGGGTGTAGGTTATATC 58.694 45.833 0.00 0.00 0.00 1.63
612 652 7.691993 AAGGGTGTAGGTTATATCAGTGATT 57.308 36.000 11.68 2.21 0.00 2.57
854 915 3.528532 TGTTCGAGCGTCTACATCTAGA 58.471 45.455 0.00 0.00 0.00 2.43
857 918 1.136474 CGAGCGTCTACATCTAGAGCG 60.136 57.143 0.00 0.00 32.59 5.03
964 1028 8.902735 GTGATCTTTTTGTTAGATTTCCGTTTC 58.097 33.333 0.00 0.00 32.64 2.78
966 1030 7.249186 TCTTTTTGTTAGATTTCCGTTTCGA 57.751 32.000 0.00 0.00 0.00 3.71
1043 1111 5.866633 TGTATTTTCACATTCGCCCAAAATC 59.133 36.000 0.00 0.00 30.99 2.17
1045 1113 4.327982 TTTCACATTCGCCCAAAATCAA 57.672 36.364 0.00 0.00 0.00 2.57
1089 1157 5.344884 GTTTCATAGTACTGACTGAGGCTC 58.655 45.833 7.79 7.79 36.28 4.70
1156 1224 9.291664 TGTTTGTAATAACTTTGTAGTGTTTGC 57.708 29.630 0.00 0.00 34.01 3.68
1157 1225 8.748582 GTTTGTAATAACTTTGTAGTGTTTGCC 58.251 33.333 0.00 0.00 34.01 4.52
1189 1280 2.831685 AGCAGTGTTGGTGATCGTTA 57.168 45.000 0.00 0.00 32.86 3.18
1235 1326 2.716217 GTTAGCAACCTCAAGATGGCT 58.284 47.619 0.00 0.00 35.50 4.75
1262 1353 2.514824 GGGGAATCAGCGGCAGTC 60.515 66.667 1.45 0.00 0.00 3.51
1277 1368 4.996434 GTCGGTGGCAGCAGCAGT 62.996 66.667 17.80 0.00 44.61 4.40
1349 1440 3.386402 AGGAGCCAATAGTAACTCTCTGC 59.614 47.826 0.00 0.00 0.00 4.26
1352 1443 2.159085 GCCAATAGTAACTCTCTGCGGT 60.159 50.000 0.00 0.00 0.00 5.68
1513 1604 2.104963 GGTCAAAGAACACTCCTGGAGT 59.895 50.000 23.49 23.49 44.44 3.85
1526 1617 1.550524 CCTGGAGTCGACATTCCTCAA 59.449 52.381 19.50 0.00 34.48 3.02
1562 1653 2.594303 CCTGCGACAGCCCAACAA 60.594 61.111 0.00 0.00 44.33 2.83
1691 1782 1.519234 CTATGCGTTCTCGGCTGCA 60.519 57.895 0.50 0.00 42.22 4.41
1703 1794 2.043046 GCTGCATTTGGGGGCCTA 60.043 61.111 0.84 0.00 0.00 3.93
1724 1815 1.126488 TCCCTATGCTCAGCTTCCAG 58.874 55.000 0.00 0.00 0.00 3.86
1778 1869 4.462280 CCCGCCGGGTTCCACTAC 62.462 72.222 15.86 0.00 38.25 2.73
1790 1881 1.354101 TCCACTACGGGTTTGGTCAT 58.646 50.000 0.00 0.00 34.36 3.06
1799 1890 1.218854 GTTTGGTCATGGCCATGGC 59.781 57.895 38.81 38.08 42.41 4.40
1880 1977 1.118838 AGCAGGCAGATGTCTACCTC 58.881 55.000 0.00 0.00 37.65 3.85
1947 2044 3.181500 CCTCGCAGCTTAAATTGGTTACC 60.181 47.826 0.00 0.00 0.00 2.85
2030 2128 6.331307 AGGCTTATCTCTACCAAATTGGAGAT 59.669 38.462 20.25 17.61 44.49 2.75
2062 2164 5.524511 TCGTTCGAATGTTTGTATGAAGG 57.475 39.130 16.65 0.00 0.00 3.46
2076 2178 2.584835 TGAAGGGTCCATGGAGTTTG 57.415 50.000 16.81 0.00 0.00 2.93
2088 2190 6.926272 GTCCATGGAGTTTGTGTATCTAGATC 59.074 42.308 16.81 2.00 0.00 2.75
2122 2227 5.336102 TCCTCTGCATGATACATCATCCTA 58.664 41.667 0.00 0.00 45.23 2.94
2300 2410 3.253188 TCATGTACCTTTTGACAGCAAGC 59.747 43.478 0.00 0.00 35.04 4.01
2320 2430 2.608752 GCTCAAGGTGTTGCCATTCTTG 60.609 50.000 0.00 0.00 40.61 3.02
2321 2431 2.624838 CTCAAGGTGTTGCCATTCTTGT 59.375 45.455 0.00 0.00 40.61 3.16
2332 2442 5.749596 TGCCATTCTTGTACAAATATCGG 57.250 39.130 10.03 7.87 0.00 4.18
2379 2520 2.957491 TGCTTGTTTGTGAAGGTTGG 57.043 45.000 0.00 0.00 0.00 3.77
2432 2574 3.134458 CAGAAACTCTCACCACTTGACC 58.866 50.000 0.00 0.00 0.00 4.02
2528 2671 3.755378 GAGACCTGTGAATTTGTCTGCAT 59.245 43.478 0.00 0.00 38.15 3.96
2549 2692 2.141517 CCAGGCTATTCTGCTGAATCG 58.858 52.381 20.59 15.92 41.55 3.34
2561 2704 2.268920 GAATCGCCACCAGCCTCA 59.731 61.111 0.00 0.00 38.78 3.86
2562 2705 1.817099 GAATCGCCACCAGCCTCAG 60.817 63.158 0.00 0.00 38.78 3.35
2563 2706 3.984193 AATCGCCACCAGCCTCAGC 62.984 63.158 0.00 0.00 38.78 4.26
2566 2709 4.792804 GCCACCAGCCTCAGCCTC 62.793 72.222 0.00 0.00 41.25 4.70
2614 2757 3.769536 ACGAAGACAAAGCAAAACAAGG 58.230 40.909 0.00 0.00 0.00 3.61
2615 2758 3.192633 ACGAAGACAAAGCAAAACAAGGT 59.807 39.130 0.00 0.00 0.00 3.50
2616 2759 4.173256 CGAAGACAAAGCAAAACAAGGTT 58.827 39.130 0.00 0.00 0.00 3.50
2617 2760 4.625311 CGAAGACAAAGCAAAACAAGGTTT 59.375 37.500 0.00 0.00 37.18 3.27
2618 2761 5.220209 CGAAGACAAAGCAAAACAAGGTTTC 60.220 40.000 0.00 0.00 34.77 2.78
2619 2762 4.503910 AGACAAAGCAAAACAAGGTTTCC 58.496 39.130 0.00 0.00 34.77 3.13
2620 2763 4.222810 AGACAAAGCAAAACAAGGTTTCCT 59.777 37.500 0.00 0.00 34.77 3.36
2621 2764 4.905429 ACAAAGCAAAACAAGGTTTCCTT 58.095 34.783 0.00 0.00 45.88 3.36
2622 2765 5.312895 ACAAAGCAAAACAAGGTTTCCTTT 58.687 33.333 11.42 11.42 41.69 3.11
2623 2766 5.181056 ACAAAGCAAAACAAGGTTTCCTTTG 59.819 36.000 25.84 25.84 41.69 2.77
2624 2767 4.551702 AGCAAAACAAGGTTTCCTTTGT 57.448 36.364 0.00 0.00 41.69 2.83
2625 2768 4.905429 AGCAAAACAAGGTTTCCTTTGTT 58.095 34.783 0.00 4.88 41.69 2.83
2626 2769 6.043854 AGCAAAACAAGGTTTCCTTTGTTA 57.956 33.333 3.80 0.00 41.69 2.41
2627 2770 6.468543 AGCAAAACAAGGTTTCCTTTGTTAA 58.531 32.000 3.80 0.00 41.69 2.01
2628 2771 6.593770 AGCAAAACAAGGTTTCCTTTGTTAAG 59.406 34.615 3.80 2.06 41.69 1.85
2629 2772 6.370442 GCAAAACAAGGTTTCCTTTGTTAAGT 59.630 34.615 3.80 1.16 41.69 2.24
2630 2773 7.094975 GCAAAACAAGGTTTCCTTTGTTAAGTT 60.095 33.333 3.80 5.75 41.69 2.66
2631 2774 8.440059 CAAAACAAGGTTTCCTTTGTTAAGTTC 58.560 33.333 3.80 0.00 41.69 3.01
2632 2775 7.476540 AACAAGGTTTCCTTTGTTAAGTTCT 57.523 32.000 1.68 0.00 41.69 3.01
2633 2776 7.476540 ACAAGGTTTCCTTTGTTAAGTTCTT 57.523 32.000 0.00 0.00 41.69 2.52
2634 2777 7.903145 ACAAGGTTTCCTTTGTTAAGTTCTTT 58.097 30.769 0.00 0.00 41.69 2.52
2635 2778 9.027202 ACAAGGTTTCCTTTGTTAAGTTCTTTA 57.973 29.630 0.00 0.00 41.69 1.85
2643 2786 8.776470 TCCTTTGTTAAGTTCTTTATTACGTGG 58.224 33.333 0.00 0.00 0.00 4.94
2644 2787 8.776470 CCTTTGTTAAGTTCTTTATTACGTGGA 58.224 33.333 0.00 0.00 0.00 4.02
2646 2789 9.934190 TTTGTTAAGTTCTTTATTACGTGGAAC 57.066 29.630 0.00 3.60 37.23 3.62
2647 2790 8.891671 TGTTAAGTTCTTTATTACGTGGAACT 57.108 30.769 0.00 5.78 45.39 3.01
2648 2791 9.979578 TGTTAAGTTCTTTATTACGTGGAACTA 57.020 29.630 0.00 0.00 43.55 2.24
2652 2795 8.315391 AGTTCTTTATTACGTGGAACTAAACC 57.685 34.615 0.00 0.00 42.85 3.27
2653 2796 7.933033 AGTTCTTTATTACGTGGAACTAAACCA 59.067 33.333 0.00 0.00 42.85 3.67
2661 2804 3.773418 TGGAACTAAACCACCGATTCA 57.227 42.857 0.00 0.00 32.03 2.57
2662 2805 4.088056 TGGAACTAAACCACCGATTCAA 57.912 40.909 0.00 0.00 32.03 2.69
2663 2806 4.462133 TGGAACTAAACCACCGATTCAAA 58.538 39.130 0.00 0.00 32.03 2.69
2664 2807 5.074115 TGGAACTAAACCACCGATTCAAAT 58.926 37.500 0.00 0.00 32.03 2.32
2665 2808 5.182380 TGGAACTAAACCACCGATTCAAATC 59.818 40.000 0.00 0.00 32.03 2.17
2666 2809 5.392703 GGAACTAAACCACCGATTCAAATCC 60.393 44.000 0.00 0.00 31.68 3.01
2667 2810 4.918588 ACTAAACCACCGATTCAAATCCT 58.081 39.130 0.00 0.00 31.68 3.24
2668 2811 6.057321 ACTAAACCACCGATTCAAATCCTA 57.943 37.500 0.00 0.00 31.68 2.94
2669 2812 6.113411 ACTAAACCACCGATTCAAATCCTAG 58.887 40.000 0.00 0.00 31.68 3.02
2670 2813 4.837093 AACCACCGATTCAAATCCTAGA 57.163 40.909 0.00 0.00 31.68 2.43
2671 2814 4.138487 ACCACCGATTCAAATCCTAGAC 57.862 45.455 0.00 0.00 31.68 2.59
2672 2815 3.517901 ACCACCGATTCAAATCCTAGACA 59.482 43.478 0.00 0.00 31.68 3.41
2673 2816 4.019681 ACCACCGATTCAAATCCTAGACAA 60.020 41.667 0.00 0.00 31.68 3.18
2674 2817 4.572389 CCACCGATTCAAATCCTAGACAAG 59.428 45.833 0.00 0.00 31.68 3.16
2675 2818 5.419542 CACCGATTCAAATCCTAGACAAGA 58.580 41.667 0.00 0.00 31.68 3.02
2676 2819 6.051717 CACCGATTCAAATCCTAGACAAGAT 58.948 40.000 0.00 0.00 31.68 2.40
2677 2820 6.018425 CACCGATTCAAATCCTAGACAAGATG 60.018 42.308 0.00 0.00 31.68 2.90
2678 2821 5.049818 CCGATTCAAATCCTAGACAAGATGC 60.050 44.000 0.00 0.00 31.68 3.91
2679 2822 5.525012 CGATTCAAATCCTAGACAAGATGCA 59.475 40.000 0.00 0.00 31.68 3.96
2680 2823 6.037500 CGATTCAAATCCTAGACAAGATGCAA 59.962 38.462 0.00 0.00 31.68 4.08
2681 2824 6.748333 TTCAAATCCTAGACAAGATGCAAG 57.252 37.500 0.00 0.00 0.00 4.01
2682 2825 6.053632 TCAAATCCTAGACAAGATGCAAGA 57.946 37.500 0.00 0.00 0.00 3.02
2683 2826 6.656902 TCAAATCCTAGACAAGATGCAAGAT 58.343 36.000 0.00 0.00 0.00 2.40
2684 2827 6.765036 TCAAATCCTAGACAAGATGCAAGATC 59.235 38.462 0.00 0.00 0.00 2.75
2685 2828 6.497624 AATCCTAGACAAGATGCAAGATCT 57.502 37.500 0.00 0.00 0.00 2.75
2686 2829 7.609097 AATCCTAGACAAGATGCAAGATCTA 57.391 36.000 0.00 0.00 0.00 1.98
2687 2830 6.398234 TCCTAGACAAGATGCAAGATCTAC 57.602 41.667 0.00 0.00 0.00 2.59
2688 2831 5.303078 TCCTAGACAAGATGCAAGATCTACC 59.697 44.000 0.00 0.00 0.00 3.18
2689 2832 4.052159 AGACAAGATGCAAGATCTACCG 57.948 45.455 0.00 0.00 0.00 4.02
2690 2833 3.126831 GACAAGATGCAAGATCTACCGG 58.873 50.000 0.00 0.00 0.00 5.28
2691 2834 1.869767 CAAGATGCAAGATCTACCGGC 59.130 52.381 0.00 0.00 0.00 6.13
2692 2835 1.123077 AGATGCAAGATCTACCGGCA 58.877 50.000 0.00 11.96 39.03 5.69
2693 2836 1.202580 AGATGCAAGATCTACCGGCAC 60.203 52.381 0.00 7.70 37.30 5.01
2707 2850 3.723554 GGCACGTTCTCTCGAAGAT 57.276 52.632 0.00 0.00 33.89 2.40
2708 2851 1.272781 GGCACGTTCTCTCGAAGATG 58.727 55.000 0.00 0.00 33.89 2.90
2709 2852 0.642800 GCACGTTCTCTCGAAGATGC 59.357 55.000 0.00 0.00 35.37 3.91
2710 2853 1.734047 GCACGTTCTCTCGAAGATGCT 60.734 52.381 11.26 0.00 37.82 3.79
2711 2854 2.600731 CACGTTCTCTCGAAGATGCTT 58.399 47.619 0.00 0.00 33.89 3.91
2712 2855 3.759418 CACGTTCTCTCGAAGATGCTTA 58.241 45.455 0.00 0.00 33.89 3.09
2713 2856 4.355437 CACGTTCTCTCGAAGATGCTTAT 58.645 43.478 0.00 0.00 33.89 1.73
2714 2857 5.511571 CACGTTCTCTCGAAGATGCTTATA 58.488 41.667 0.00 0.00 33.89 0.98
2715 2858 5.971792 CACGTTCTCTCGAAGATGCTTATAA 59.028 40.000 0.00 0.00 33.89 0.98
2716 2859 6.472486 CACGTTCTCTCGAAGATGCTTATAAA 59.528 38.462 0.00 0.00 33.89 1.40
2717 2860 7.009265 CACGTTCTCTCGAAGATGCTTATAAAA 59.991 37.037 0.00 0.00 33.89 1.52
2718 2861 7.544566 ACGTTCTCTCGAAGATGCTTATAAAAA 59.455 33.333 0.00 0.00 33.89 1.94
2719 2862 8.543774 CGTTCTCTCGAAGATGCTTATAAAAAT 58.456 33.333 0.00 0.00 33.89 1.82
2729 2872 9.722056 AAGATGCTTATAAAAATAGAGTTTGCG 57.278 29.630 0.00 0.00 0.00 4.85
2730 2873 8.893727 AGATGCTTATAAAAATAGAGTTTGCGT 58.106 29.630 0.00 0.00 0.00 5.24
2732 2875 9.931210 ATGCTTATAAAAATAGAGTTTGCGTAC 57.069 29.630 0.00 0.00 0.00 3.67
2733 2876 8.392612 TGCTTATAAAAATAGAGTTTGCGTACC 58.607 33.333 0.00 0.00 0.00 3.34
2734 2877 8.610035 GCTTATAAAAATAGAGTTTGCGTACCT 58.390 33.333 0.00 0.00 0.00 3.08
2739 2882 8.556213 AAAAATAGAGTTTGCGTACCTATTCA 57.444 30.769 0.00 0.00 31.17 2.57
2740 2883 8.732746 AAAATAGAGTTTGCGTACCTATTCAT 57.267 30.769 0.00 0.00 31.17 2.57
2741 2884 9.826574 AAAATAGAGTTTGCGTACCTATTCATA 57.173 29.630 0.00 0.00 31.17 2.15
2742 2885 9.477484 AAATAGAGTTTGCGTACCTATTCATAG 57.523 33.333 0.00 0.00 31.17 2.23
2754 2897 4.573900 CCTATTCATAGGGATGAGTGTGC 58.426 47.826 5.06 0.00 44.97 4.57
2755 2898 4.040829 CCTATTCATAGGGATGAGTGTGCA 59.959 45.833 5.06 0.00 44.97 4.57
2756 2899 2.988010 TCATAGGGATGAGTGTGCAC 57.012 50.000 10.75 10.75 37.15 4.57
2757 2900 1.136891 TCATAGGGATGAGTGTGCACG 59.863 52.381 13.13 0.00 37.15 5.34
2758 2901 0.179073 ATAGGGATGAGTGTGCACGC 60.179 55.000 22.76 22.76 36.20 5.34
2759 2902 1.540435 TAGGGATGAGTGTGCACGCA 61.540 55.000 30.53 19.44 44.74 5.24
2763 2906 4.139510 TGAGTGTGCACGCATGTT 57.860 50.000 30.53 11.41 36.23 2.71
2764 2907 1.648174 TGAGTGTGCACGCATGTTG 59.352 52.632 30.53 0.00 36.23 3.33
2765 2908 1.094650 TGAGTGTGCACGCATGTTGT 61.095 50.000 30.53 10.24 36.23 3.32
2766 2909 0.658244 GAGTGTGCACGCATGTTGTG 60.658 55.000 30.53 13.78 40.32 3.33
2767 2910 1.063972 GTGTGCACGCATGTTGTGT 59.936 52.632 25.05 0.27 42.58 3.72
2775 2918 2.956469 GCATGTTGTGTGTTTGCGT 58.044 47.368 0.00 0.00 0.00 5.24
2776 2919 0.845768 GCATGTTGTGTGTTTGCGTC 59.154 50.000 0.00 0.00 0.00 5.19
2777 2920 1.533756 GCATGTTGTGTGTTTGCGTCT 60.534 47.619 0.00 0.00 0.00 4.18
2778 2921 2.110990 CATGTTGTGTGTTTGCGTCTG 58.889 47.619 0.00 0.00 0.00 3.51
2779 2922 1.160989 TGTTGTGTGTTTGCGTCTGT 58.839 45.000 0.00 0.00 0.00 3.41
2780 2923 2.347731 TGTTGTGTGTTTGCGTCTGTA 58.652 42.857 0.00 0.00 0.00 2.74
2781 2924 2.094575 TGTTGTGTGTTTGCGTCTGTAC 59.905 45.455 0.00 0.00 0.00 2.90
2782 2925 2.303163 TGTGTGTTTGCGTCTGTACT 57.697 45.000 0.00 0.00 0.00 2.73
2783 2926 1.930503 TGTGTGTTTGCGTCTGTACTG 59.069 47.619 0.00 0.00 0.00 2.74
2784 2927 1.931172 GTGTGTTTGCGTCTGTACTGT 59.069 47.619 0.00 0.00 0.00 3.55
2785 2928 1.930503 TGTGTTTGCGTCTGTACTGTG 59.069 47.619 0.00 0.00 0.00 3.66
2786 2929 1.931172 GTGTTTGCGTCTGTACTGTGT 59.069 47.619 0.00 0.00 0.00 3.72
2787 2930 2.350498 GTGTTTGCGTCTGTACTGTGTT 59.650 45.455 0.00 0.00 0.00 3.32
2788 2931 3.004171 TGTTTGCGTCTGTACTGTGTTT 58.996 40.909 0.00 0.00 0.00 2.83
2789 2932 3.181515 TGTTTGCGTCTGTACTGTGTTTG 60.182 43.478 0.00 0.00 0.00 2.93
2790 2933 1.577468 TGCGTCTGTACTGTGTTTGG 58.423 50.000 0.00 0.00 0.00 3.28
2791 2934 1.137282 TGCGTCTGTACTGTGTTTGGA 59.863 47.619 0.00 0.00 0.00 3.53
2792 2935 2.206750 GCGTCTGTACTGTGTTTGGAA 58.793 47.619 0.00 0.00 0.00 3.53
2793 2936 2.610374 GCGTCTGTACTGTGTTTGGAAA 59.390 45.455 0.00 0.00 0.00 3.13
2794 2937 3.064271 GCGTCTGTACTGTGTTTGGAAAA 59.936 43.478 0.00 0.00 0.00 2.29
2795 2938 4.785341 GCGTCTGTACTGTGTTTGGAAAAG 60.785 45.833 0.00 0.00 0.00 2.27
2796 2939 4.569162 CGTCTGTACTGTGTTTGGAAAAGA 59.431 41.667 0.00 0.00 0.00 2.52
2797 2940 5.064198 CGTCTGTACTGTGTTTGGAAAAGAA 59.936 40.000 0.00 0.00 0.00 2.52
2798 2941 6.402766 CGTCTGTACTGTGTTTGGAAAAGAAA 60.403 38.462 0.00 0.00 0.00 2.52
2799 2942 7.309920 GTCTGTACTGTGTTTGGAAAAGAAAA 58.690 34.615 0.00 0.00 0.00 2.29
2800 2943 7.810759 GTCTGTACTGTGTTTGGAAAAGAAAAA 59.189 33.333 0.00 0.00 0.00 1.94
2801 2944 7.810759 TCTGTACTGTGTTTGGAAAAGAAAAAC 59.189 33.333 0.00 0.00 34.97 2.43
2802 2945 7.434492 TGTACTGTGTTTGGAAAAGAAAAACA 58.566 30.769 0.00 0.00 40.49 2.83
2803 2946 8.091449 TGTACTGTGTTTGGAAAAGAAAAACAT 58.909 29.630 3.79 0.00 43.47 2.71
2804 2947 7.595311 ACTGTGTTTGGAAAAGAAAAACATC 57.405 32.000 3.79 0.27 43.47 3.06
2805 2948 6.310224 ACTGTGTTTGGAAAAGAAAAACATCG 59.690 34.615 3.79 1.91 43.47 3.84
2806 2949 6.390721 TGTGTTTGGAAAAGAAAAACATCGA 58.609 32.000 3.79 0.00 43.47 3.59
2807 2950 7.038659 TGTGTTTGGAAAAGAAAAACATCGAT 58.961 30.769 0.00 0.00 43.47 3.59
2808 2951 8.191446 TGTGTTTGGAAAAGAAAAACATCGATA 58.809 29.630 0.00 0.00 43.47 2.92
2809 2952 9.191995 GTGTTTGGAAAAGAAAAACATCGATAT 57.808 29.630 0.00 0.00 43.47 1.63
2819 2962 9.653287 AAGAAAAACATCGATATACTTGACTCA 57.347 29.630 0.00 0.00 0.00 3.41
2820 2963 9.823647 AGAAAAACATCGATATACTTGACTCAT 57.176 29.630 0.00 0.00 0.00 2.90
2843 2986 2.977772 GAGCATCTACAGCTGGACTT 57.022 50.000 19.93 0.00 43.58 3.01
2844 2987 2.548875 GAGCATCTACAGCTGGACTTG 58.451 52.381 19.93 8.81 43.58 3.16
2845 2988 1.209019 AGCATCTACAGCTGGACTTGG 59.791 52.381 19.93 3.95 41.61 3.61
2846 2989 1.065854 GCATCTACAGCTGGACTTGGT 60.066 52.381 19.93 0.00 0.00 3.67
2847 2990 2.168521 GCATCTACAGCTGGACTTGGTA 59.831 50.000 19.93 0.00 0.00 3.25
2848 2991 3.369471 GCATCTACAGCTGGACTTGGTAA 60.369 47.826 19.93 0.00 0.00 2.85
2849 2992 4.832248 CATCTACAGCTGGACTTGGTAAA 58.168 43.478 19.93 0.00 0.00 2.01
2850 2993 5.431765 CATCTACAGCTGGACTTGGTAAAT 58.568 41.667 19.93 0.00 0.00 1.40
2851 2994 5.086104 TCTACAGCTGGACTTGGTAAATC 57.914 43.478 19.93 0.00 0.00 2.17
2852 2995 3.073274 ACAGCTGGACTTGGTAAATCC 57.927 47.619 19.93 0.00 0.00 3.01
2853 2996 2.009774 CAGCTGGACTTGGTAAATCCG 58.990 52.381 5.57 0.00 39.52 4.18
2854 2997 1.906574 AGCTGGACTTGGTAAATCCGA 59.093 47.619 0.00 0.00 39.52 4.55
2855 2998 2.007608 GCTGGACTTGGTAAATCCGAC 58.992 52.381 0.00 0.00 39.52 4.79
2856 2999 2.629051 CTGGACTTGGTAAATCCGACC 58.371 52.381 0.00 0.00 39.52 4.79
2857 3000 1.279846 TGGACTTGGTAAATCCGACCC 59.720 52.381 0.00 0.00 39.52 4.46
2858 3001 1.407851 GGACTTGGTAAATCCGACCCC 60.408 57.143 0.00 0.00 39.52 4.95
2859 3002 1.558294 GACTTGGTAAATCCGACCCCT 59.442 52.381 0.00 0.00 39.52 4.79
2860 3003 1.558294 ACTTGGTAAATCCGACCCCTC 59.442 52.381 0.00 0.00 39.52 4.30
2861 3004 1.557832 CTTGGTAAATCCGACCCCTCA 59.442 52.381 0.00 0.00 39.52 3.86
2862 3005 1.659022 TGGTAAATCCGACCCCTCAA 58.341 50.000 0.00 0.00 39.52 3.02
2863 3006 1.986631 TGGTAAATCCGACCCCTCAAA 59.013 47.619 0.00 0.00 39.52 2.69
2864 3007 2.290450 TGGTAAATCCGACCCCTCAAAC 60.290 50.000 0.00 0.00 39.52 2.93
2865 3008 2.004733 GTAAATCCGACCCCTCAAACG 58.995 52.381 0.00 0.00 0.00 3.60
2866 3009 0.958876 AAATCCGACCCCTCAAACGC 60.959 55.000 0.00 0.00 0.00 4.84
2867 3010 2.814913 AATCCGACCCCTCAAACGCC 62.815 60.000 0.00 0.00 0.00 5.68
2904 3047 2.430921 GTCCGCAGACAGTGACCG 60.431 66.667 0.00 0.00 42.99 4.79
2906 3049 3.991051 CCGCAGACAGTGACCGGT 61.991 66.667 6.92 6.92 34.56 5.28
2910 3053 1.016130 GCAGACAGTGACCGGTCATG 61.016 60.000 38.11 32.94 42.18 3.07
2918 3061 2.303022 AGTGACCGGTCATGTCTCAAAT 59.697 45.455 38.11 11.05 42.18 2.32
2921 3064 4.876107 GTGACCGGTCATGTCTCAAATAAT 59.124 41.667 38.11 0.00 42.18 1.28
2923 3066 3.627577 ACCGGTCATGTCTCAAATAATGC 59.372 43.478 0.00 0.00 0.00 3.56
2932 3075 6.778834 TGTCTCAAATAATGCATTCCACAT 57.221 33.333 16.86 0.23 0.00 3.21
2934 3077 6.604396 TGTCTCAAATAATGCATTCCACATCT 59.396 34.615 16.86 0.00 0.00 2.90
2938 3081 6.551975 TCAAATAATGCATTCCACATCTGGAT 59.448 34.615 16.86 0.00 46.64 3.41
2954 3097 8.616076 CACATCTGGATACCTCAAATTAGAAAC 58.384 37.037 0.00 0.00 0.00 2.78
2957 3100 8.618240 TCTGGATACCTCAAATTAGAAACCTA 57.382 34.615 0.00 0.00 0.00 3.08
2964 3107 8.051901 ACCTCAAATTAGAAACCTAAAATCCG 57.948 34.615 0.00 0.00 30.71 4.18
2980 3123 7.795272 CCTAAAATCCGTATTATTACACGCAAC 59.205 37.037 0.00 0.00 36.85 4.17
2981 3124 6.665474 AAATCCGTATTATTACACGCAACA 57.335 33.333 0.00 0.00 36.85 3.33
2982 3125 5.646467 ATCCGTATTATTACACGCAACAC 57.354 39.130 0.00 0.00 36.85 3.32
2983 3126 4.492611 TCCGTATTATTACACGCAACACA 58.507 39.130 0.00 0.00 36.85 3.72
2985 3128 5.232626 TCCGTATTATTACACGCAACACATC 59.767 40.000 0.00 0.00 36.85 3.06
2987 3130 6.455780 CCGTATTATTACACGCAACACATCAA 60.456 38.462 0.00 0.00 36.85 2.57
2988 3131 7.123190 CGTATTATTACACGCAACACATCAAT 58.877 34.615 0.00 0.00 0.00 2.57
2989 3132 7.317970 CGTATTATTACACGCAACACATCAATC 59.682 37.037 0.00 0.00 0.00 2.67
2990 3133 6.735678 TTATTACACGCAACACATCAATCT 57.264 33.333 0.00 0.00 0.00 2.40
2991 3134 5.627499 ATTACACGCAACACATCAATCTT 57.373 34.783 0.00 0.00 0.00 2.40
2994 3139 5.431420 ACACGCAACACATCAATCTTTAA 57.569 34.783 0.00 0.00 0.00 1.52
2996 3141 5.008613 ACACGCAACACATCAATCTTTAAGT 59.991 36.000 0.00 0.00 0.00 2.24
3059 3211 2.883828 CGCCCCTCAGAGTGTTGGT 61.884 63.158 0.00 0.00 0.00 3.67
3061 3213 0.606673 GCCCCTCAGAGTGTTGGTTC 60.607 60.000 0.00 0.00 0.00 3.62
3064 3216 0.679505 CCTCAGAGTGTTGGTTCGGA 59.320 55.000 0.00 0.00 0.00 4.55
3079 3231 3.766691 GGACGCCGGCAAGGTAGA 61.767 66.667 28.98 0.00 43.70 2.59
3085 3237 2.029307 GCCGGCAAGGTAGAGTAGGG 62.029 65.000 24.80 0.00 43.70 3.53
3086 3238 1.442148 CGGCAAGGTAGAGTAGGGC 59.558 63.158 0.00 0.00 0.00 5.19
3090 3242 1.202698 GCAAGGTAGAGTAGGGCATGG 60.203 57.143 0.00 0.00 0.00 3.66
3091 3243 2.398588 CAAGGTAGAGTAGGGCATGGA 58.601 52.381 0.00 0.00 0.00 3.41
3120 3272 1.290324 GCTCACGAGACTCAAGGCA 59.710 57.895 2.82 0.00 0.00 4.75
3124 3276 2.201022 ACGAGACTCAAGGCACCGT 61.201 57.895 2.82 0.00 0.00 4.83
3125 3277 1.444553 CGAGACTCAAGGCACCGTC 60.445 63.158 2.82 0.00 0.00 4.79
3150 3302 1.500474 CCATGCCCTACTCTTCCTCA 58.500 55.000 0.00 0.00 0.00 3.86
3151 3303 1.139853 CCATGCCCTACTCTTCCTCAC 59.860 57.143 0.00 0.00 0.00 3.51
3189 3348 1.721664 GGTGGACGTCGGATCGATGA 61.722 60.000 9.92 0.00 44.49 2.92
3192 3351 0.591659 GGACGTCGGATCGATGATGA 59.408 55.000 9.92 0.00 44.49 2.92
3195 3354 3.309388 GACGTCGGATCGATGATGAATT 58.691 45.455 15.18 0.00 44.49 2.17
3201 3360 3.612717 CGGATCGATGATGAATTCGTCCT 60.613 47.826 22.07 14.14 37.10 3.85
3202 3361 3.923461 GGATCGATGATGAATTCGTCCTC 59.077 47.826 22.07 19.93 37.10 3.71
3224 3383 2.579787 GAGCCGATGACGTCCACG 60.580 66.667 14.12 17.43 46.33 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
119 145 1.227556 CATTTACCTCGGGGGAGCG 60.228 63.158 6.13 0.00 38.76 5.03
120 146 1.148498 CCATTTACCTCGGGGGAGC 59.852 63.158 6.13 0.00 38.76 4.70
121 147 1.148498 GCCATTTACCTCGGGGGAG 59.852 63.158 6.13 0.00 38.76 4.30
247 277 2.203056 CATGAATCGGCCAGCGGA 60.203 61.111 2.24 2.17 0.00 5.54
248 278 3.282157 CCATGAATCGGCCAGCGG 61.282 66.667 2.24 0.00 0.00 5.52
249 279 3.282157 CCCATGAATCGGCCAGCG 61.282 66.667 2.24 0.00 0.00 5.18
272 302 4.742201 CACCAGGACGCCGACAGG 62.742 72.222 0.00 0.00 41.62 4.00
285 315 3.785859 GGCTCGCCTGGATCACCA 61.786 66.667 0.00 0.00 44.76 4.17
393 427 7.737972 TCAATCTATTTCTTCAACAAACGGA 57.262 32.000 0.00 0.00 0.00 4.69
559 598 4.084433 CCGCTCAAACAACAAAATTCCATG 60.084 41.667 0.00 0.00 0.00 3.66
561 600 3.452474 CCGCTCAAACAACAAAATTCCA 58.548 40.909 0.00 0.00 0.00 3.53
562 601 2.799978 CCCGCTCAAACAACAAAATTCC 59.200 45.455 0.00 0.00 0.00 3.01
565 604 1.412343 AGCCCGCTCAAACAACAAAAT 59.588 42.857 0.00 0.00 0.00 1.82
570 609 0.383949 TTTCAGCCCGCTCAAACAAC 59.616 50.000 0.00 0.00 0.00 3.32
589 628 7.076446 AGAATCACTGATATAACCTACACCCT 58.924 38.462 0.00 0.00 0.00 4.34
612 652 1.344438 CTGAGTACCCACAGCAACAGA 59.656 52.381 0.00 0.00 0.00 3.41
648 688 6.425210 TGCTACTCAGGTGAGCATATTATT 57.575 37.500 6.91 0.00 45.79 1.40
837 898 1.136474 CGCTCTAGATGTAGACGCTCG 60.136 57.143 14.74 6.03 31.98 5.03
854 915 2.550978 CATCCGGAATTACTTGACGCT 58.449 47.619 9.01 0.00 0.00 5.07
857 918 3.134081 TCCTCCATCCGGAATTACTTGAC 59.866 47.826 9.01 0.00 42.21 3.18
1033 1101 1.256812 AAGGGTCTTGATTTTGGGCG 58.743 50.000 0.00 0.00 0.00 6.13
1111 1179 6.183360 ACAAACAGTAGAGAGTTACACCACAT 60.183 38.462 0.00 0.00 0.00 3.21
1154 1222 2.768527 ACTGCTAGAAAGAGCTATGGCA 59.231 45.455 3.10 0.00 43.27 4.92
1155 1223 3.129871 CACTGCTAGAAAGAGCTATGGC 58.870 50.000 0.00 0.00 43.27 4.40
1156 1224 4.399004 ACACTGCTAGAAAGAGCTATGG 57.601 45.455 0.00 0.00 43.27 2.74
1157 1225 4.569966 CCAACACTGCTAGAAAGAGCTATG 59.430 45.833 0.00 0.00 43.27 2.23
1189 1280 3.820467 TGAAACCTGCGATTTCAAGTGAT 59.180 39.130 7.22 0.00 41.82 3.06
1220 1311 0.609957 TGGCAGCCATCTTGAGGTTG 60.610 55.000 11.22 0.00 39.98 3.77
1223 1314 0.744874 CATTGGCAGCCATCTTGAGG 59.255 55.000 17.09 0.00 31.53 3.86
1262 1353 4.994471 TCACTGCTGCTGCCACCG 62.994 66.667 13.47 1.81 38.71 4.94
1277 1368 3.040206 GCTCCCTCCAGCTGCATCA 62.040 63.158 8.66 0.00 36.38 3.07
1349 1440 0.811616 GCCAGCAGAATAGGTGACCG 60.812 60.000 0.00 0.00 39.26 4.79
1352 1443 1.264749 ACGGCCAGCAGAATAGGTGA 61.265 55.000 2.24 0.00 39.26 4.02
1400 1491 0.466189 CAGGGCACTCTGGTGTGTTT 60.466 55.000 0.00 0.00 44.65 2.83
1505 1596 1.272480 TGAGGAATGTCGACTCCAGGA 60.272 52.381 21.96 6.13 33.83 3.86
1513 1604 1.079405 GGGCGTTGAGGAATGTCGA 60.079 57.895 0.00 0.00 0.00 4.20
1562 1653 4.396166 CCGAAATTGTTGTTAGGATCAGCT 59.604 41.667 0.00 0.00 0.00 4.24
1643 1734 0.459585 GTCCATTCGCTAGCGGAACA 60.460 55.000 34.76 14.84 40.25 3.18
1649 1740 1.883084 CCACCGTCCATTCGCTAGC 60.883 63.158 4.06 4.06 0.00 3.42
1652 1743 4.096003 CCCCACCGTCCATTCGCT 62.096 66.667 0.00 0.00 0.00 4.93
1703 1794 2.106166 CTGGAAGCTGAGCATAGGGAAT 59.894 50.000 7.39 0.00 0.00 3.01
1733 1824 2.750141 ATGCAGCTGGATCTGGAAAT 57.250 45.000 15.88 0.00 37.93 2.17
1763 1854 4.807039 CCGTAGTGGAACCCGGCG 62.807 72.222 0.00 0.00 43.41 6.46
1772 1863 1.448985 CATGACCAAACCCGTAGTGG 58.551 55.000 0.00 0.00 38.46 4.00
1778 1869 1.682005 ATGGCCATGACCAAACCCG 60.682 57.895 20.04 0.00 44.65 5.28
1880 1977 3.217626 GACCATGATAAGAAGGGCCTTG 58.782 50.000 26.47 7.11 0.00 3.61
1947 2044 4.142403 ACCACCACAATTTTGATGATAGCG 60.142 41.667 0.00 0.00 0.00 4.26
2030 2128 6.036300 ACAAACATTCGAACGAACAGAACTTA 59.964 34.615 11.71 0.00 36.91 2.24
2062 2164 4.222124 AGATACACAAACTCCATGGACC 57.778 45.455 11.44 0.00 0.00 4.46
2076 2178 6.071616 GGAAGACCATCCAGATCTAGATACAC 60.072 46.154 4.89 0.00 39.42 2.90
2088 2190 0.907486 TGCAGAGGAAGACCATCCAG 59.093 55.000 0.00 0.00 42.27 3.86
2122 2227 8.062065 TCAAAGGAGTCAAAACTACAAAACAT 57.938 30.769 0.00 0.00 39.01 2.71
2185 2295 1.295423 CAGGTTACAGACACGGGGG 59.705 63.158 0.00 0.00 0.00 5.40
2379 2520 6.460676 CCAACAAAGATGAAATAGCCCATCTC 60.461 42.308 0.00 0.00 46.15 2.75
2432 2574 2.782192 CGCCGTTACAGTAGAAGATTCG 59.218 50.000 0.00 0.00 0.00 3.34
2458 2600 0.467804 TGTGTGGAGCAAGTGCAGTA 59.532 50.000 6.00 0.00 45.16 2.74
2528 2671 2.224137 CGATTCAGCAGAATAGCCTGGA 60.224 50.000 4.09 0.00 44.30 3.86
2549 2692 4.792804 GAGGCTGAGGCTGGTGGC 62.793 72.222 15.18 0.00 38.98 5.01
2561 2704 3.241530 TGGTCGGCACAAGAGGCT 61.242 61.111 0.00 0.00 0.00 4.58
2562 2705 3.050275 GTGGTCGGCACAAGAGGC 61.050 66.667 0.00 0.00 0.00 4.70
2563 2706 2.738521 CGTGGTCGGCACAAGAGG 60.739 66.667 0.00 0.00 0.00 3.69
2564 2707 3.414700 GCGTGGTCGGCACAAGAG 61.415 66.667 0.00 0.00 37.56 2.85
2617 2760 8.776470 CCACGTAATAAAGAACTTAACAAAGGA 58.224 33.333 0.00 0.00 0.00 3.36
2618 2761 8.776470 TCCACGTAATAAAGAACTTAACAAAGG 58.224 33.333 0.00 0.00 0.00 3.11
2620 2763 9.934190 GTTCCACGTAATAAAGAACTTAACAAA 57.066 29.630 0.00 0.00 35.17 2.83
2621 2764 9.328845 AGTTCCACGTAATAAAGAACTTAACAA 57.671 29.630 0.00 0.00 43.41 2.83
2622 2765 8.891671 AGTTCCACGTAATAAAGAACTTAACA 57.108 30.769 0.00 0.00 43.41 2.41
2626 2769 8.777413 GGTTTAGTTCCACGTAATAAAGAACTT 58.223 33.333 8.80 0.00 43.41 2.66
2627 2770 7.933033 TGGTTTAGTTCCACGTAATAAAGAACT 59.067 33.333 8.57 8.57 46.53 3.01
2628 2771 8.011673 GTGGTTTAGTTCCACGTAATAAAGAAC 58.988 37.037 0.00 0.00 44.34 3.01
2629 2772 8.086851 GTGGTTTAGTTCCACGTAATAAAGAA 57.913 34.615 0.00 0.00 44.34 2.52
2630 2773 7.656707 GTGGTTTAGTTCCACGTAATAAAGA 57.343 36.000 0.00 0.00 44.34 2.52
2640 2783 9.640596 GGATTTGAATCGGTGGTTTAGTTCCAC 62.641 44.444 6.55 6.55 41.55 4.02
2641 2784 3.773418 TGAATCGGTGGTTTAGTTCCA 57.227 42.857 0.00 0.00 0.00 3.53
2642 2785 5.392703 GGATTTGAATCGGTGGTTTAGTTCC 60.393 44.000 0.00 0.00 36.27 3.62
2643 2786 5.414765 AGGATTTGAATCGGTGGTTTAGTTC 59.585 40.000 0.00 0.00 36.27 3.01
2644 2787 5.321927 AGGATTTGAATCGGTGGTTTAGTT 58.678 37.500 0.00 0.00 36.27 2.24
2645 2788 4.918588 AGGATTTGAATCGGTGGTTTAGT 58.081 39.130 0.00 0.00 36.27 2.24
2646 2789 6.258068 GTCTAGGATTTGAATCGGTGGTTTAG 59.742 42.308 0.00 0.00 36.27 1.85
2647 2790 6.110707 GTCTAGGATTTGAATCGGTGGTTTA 58.889 40.000 0.00 0.00 36.27 2.01
2648 2791 4.941873 GTCTAGGATTTGAATCGGTGGTTT 59.058 41.667 0.00 0.00 36.27 3.27
2649 2792 4.019681 TGTCTAGGATTTGAATCGGTGGTT 60.020 41.667 0.00 0.00 36.27 3.67
2650 2793 3.517901 TGTCTAGGATTTGAATCGGTGGT 59.482 43.478 0.00 0.00 36.27 4.16
2651 2794 4.137116 TGTCTAGGATTTGAATCGGTGG 57.863 45.455 0.00 0.00 36.27 4.61
2652 2795 5.419542 TCTTGTCTAGGATTTGAATCGGTG 58.580 41.667 0.00 0.00 36.27 4.94
2653 2796 5.677319 TCTTGTCTAGGATTTGAATCGGT 57.323 39.130 0.00 0.00 36.27 4.69
2654 2797 5.049818 GCATCTTGTCTAGGATTTGAATCGG 60.050 44.000 0.00 0.00 36.27 4.18
2655 2798 5.525012 TGCATCTTGTCTAGGATTTGAATCG 59.475 40.000 0.00 0.00 36.27 3.34
2656 2799 6.932356 TGCATCTTGTCTAGGATTTGAATC 57.068 37.500 0.00 0.00 34.66 2.52
2657 2800 7.114754 TCTTGCATCTTGTCTAGGATTTGAAT 58.885 34.615 0.00 0.00 0.00 2.57
2658 2801 6.475504 TCTTGCATCTTGTCTAGGATTTGAA 58.524 36.000 0.00 0.00 0.00 2.69
2659 2802 6.053632 TCTTGCATCTTGTCTAGGATTTGA 57.946 37.500 0.00 0.00 0.00 2.69
2660 2803 6.766944 AGATCTTGCATCTTGTCTAGGATTTG 59.233 38.462 0.00 0.00 0.00 2.32
2661 2804 6.897986 AGATCTTGCATCTTGTCTAGGATTT 58.102 36.000 0.00 0.00 0.00 2.17
2662 2805 6.497624 AGATCTTGCATCTTGTCTAGGATT 57.502 37.500 0.00 0.00 0.00 3.01
2663 2806 6.014669 GGTAGATCTTGCATCTTGTCTAGGAT 60.015 42.308 0.00 0.00 0.00 3.24
2664 2807 5.303078 GGTAGATCTTGCATCTTGTCTAGGA 59.697 44.000 0.00 0.00 0.00 2.94
2665 2808 5.537188 GGTAGATCTTGCATCTTGTCTAGG 58.463 45.833 0.00 0.00 0.00 3.02
2666 2809 5.218885 CGGTAGATCTTGCATCTTGTCTAG 58.781 45.833 0.00 0.00 0.00 2.43
2667 2810 4.038042 CCGGTAGATCTTGCATCTTGTCTA 59.962 45.833 0.00 0.00 0.00 2.59
2668 2811 3.181471 CCGGTAGATCTTGCATCTTGTCT 60.181 47.826 0.00 0.00 0.00 3.41
2669 2812 3.126831 CCGGTAGATCTTGCATCTTGTC 58.873 50.000 0.00 0.00 0.00 3.18
2670 2813 2.743183 GCCGGTAGATCTTGCATCTTGT 60.743 50.000 1.90 0.00 0.00 3.16
2671 2814 1.869767 GCCGGTAGATCTTGCATCTTG 59.130 52.381 1.90 0.00 0.00 3.02
2672 2815 1.486310 TGCCGGTAGATCTTGCATCTT 59.514 47.619 1.90 0.00 0.00 2.40
2673 2816 1.123077 TGCCGGTAGATCTTGCATCT 58.877 50.000 1.90 0.00 0.00 2.90
2674 2817 1.221414 GTGCCGGTAGATCTTGCATC 58.779 55.000 1.90 0.00 34.04 3.91
2675 2818 0.530650 CGTGCCGGTAGATCTTGCAT 60.531 55.000 1.90 0.00 34.04 3.96
2676 2819 1.153647 CGTGCCGGTAGATCTTGCA 60.154 57.895 1.90 2.57 0.00 4.08
2677 2820 0.739813 AACGTGCCGGTAGATCTTGC 60.740 55.000 1.90 0.00 0.00 4.01
2678 2821 1.135083 AGAACGTGCCGGTAGATCTTG 60.135 52.381 1.90 0.00 0.00 3.02
2679 2822 1.134560 GAGAACGTGCCGGTAGATCTT 59.865 52.381 1.90 0.00 0.00 2.40
2680 2823 0.739561 GAGAACGTGCCGGTAGATCT 59.260 55.000 1.90 0.00 0.00 2.75
2681 2824 0.739561 AGAGAACGTGCCGGTAGATC 59.260 55.000 1.90 0.00 0.00 2.75
2682 2825 0.739561 GAGAGAACGTGCCGGTAGAT 59.260 55.000 1.90 0.00 0.00 1.98
2683 2826 1.642037 CGAGAGAACGTGCCGGTAGA 61.642 60.000 1.90 0.00 0.00 2.59
2684 2827 1.226323 CGAGAGAACGTGCCGGTAG 60.226 63.158 1.90 0.00 0.00 3.18
2685 2828 1.236616 TTCGAGAGAACGTGCCGGTA 61.237 55.000 1.90 0.00 46.92 4.02
2686 2829 2.473664 CTTCGAGAGAACGTGCCGGT 62.474 60.000 1.90 0.00 46.92 5.28
2687 2830 1.801913 CTTCGAGAGAACGTGCCGG 60.802 63.158 0.00 0.00 46.92 6.13
2688 2831 0.179161 ATCTTCGAGAGAACGTGCCG 60.179 55.000 0.00 0.00 46.92 5.69
2689 2832 1.272781 CATCTTCGAGAGAACGTGCC 58.727 55.000 0.00 0.00 46.92 5.01
2690 2833 0.642800 GCATCTTCGAGAGAACGTGC 59.357 55.000 0.00 0.00 46.92 5.34
2691 2834 2.270275 AGCATCTTCGAGAGAACGTG 57.730 50.000 0.00 0.00 46.92 4.49
2692 2835 4.640789 ATAAGCATCTTCGAGAGAACGT 57.359 40.909 2.21 0.00 46.92 3.99
2693 2836 7.451281 TTTTATAAGCATCTTCGAGAGAACG 57.549 36.000 2.21 0.00 46.92 3.95
2703 2846 9.722056 CGCAAACTCTATTTTTATAAGCATCTT 57.278 29.630 0.00 0.00 0.00 2.40
2704 2847 8.893727 ACGCAAACTCTATTTTTATAAGCATCT 58.106 29.630 0.00 0.00 0.00 2.90
2706 2849 9.931210 GTACGCAAACTCTATTTTTATAAGCAT 57.069 29.630 0.00 0.00 0.00 3.79
2707 2850 8.392612 GGTACGCAAACTCTATTTTTATAAGCA 58.607 33.333 0.00 0.00 0.00 3.91
2708 2851 8.610035 AGGTACGCAAACTCTATTTTTATAAGC 58.390 33.333 0.00 0.00 0.00 3.09
2713 2856 9.656040 TGAATAGGTACGCAAACTCTATTTTTA 57.344 29.630 0.00 0.00 32.70 1.52
2714 2857 8.556213 TGAATAGGTACGCAAACTCTATTTTT 57.444 30.769 0.00 0.00 32.70 1.94
2715 2858 8.732746 ATGAATAGGTACGCAAACTCTATTTT 57.267 30.769 0.00 0.00 32.70 1.82
2716 2859 9.477484 CTATGAATAGGTACGCAAACTCTATTT 57.523 33.333 0.00 0.00 32.70 1.40
2717 2860 8.088981 CCTATGAATAGGTACGCAAACTCTATT 58.911 37.037 8.04 0.00 43.95 1.73
2718 2861 7.309867 CCCTATGAATAGGTACGCAAACTCTAT 60.310 40.741 14.00 0.00 46.84 1.98
2719 2862 6.015688 CCCTATGAATAGGTACGCAAACTCTA 60.016 42.308 14.00 0.00 46.84 2.43
2720 2863 5.221461 CCCTATGAATAGGTACGCAAACTCT 60.221 44.000 14.00 0.00 46.84 3.24
2721 2864 4.989168 CCCTATGAATAGGTACGCAAACTC 59.011 45.833 14.00 0.00 46.84 3.01
2722 2865 4.652421 TCCCTATGAATAGGTACGCAAACT 59.348 41.667 14.00 0.00 46.84 2.66
2723 2866 4.952460 TCCCTATGAATAGGTACGCAAAC 58.048 43.478 14.00 0.00 46.84 2.93
2724 2867 5.305902 TCATCCCTATGAATAGGTACGCAAA 59.694 40.000 14.00 0.00 46.84 3.68
2725 2868 4.836175 TCATCCCTATGAATAGGTACGCAA 59.164 41.667 14.00 0.00 46.84 4.85
2726 2869 4.412843 TCATCCCTATGAATAGGTACGCA 58.587 43.478 14.00 0.00 46.84 5.24
2727 2870 4.463186 ACTCATCCCTATGAATAGGTACGC 59.537 45.833 14.00 0.00 46.84 4.42
2728 2871 5.477291 ACACTCATCCCTATGAATAGGTACG 59.523 44.000 14.00 3.56 46.84 3.67
2729 2872 6.692486 CACACTCATCCCTATGAATAGGTAC 58.308 44.000 14.00 0.00 46.84 3.34
2730 2873 5.246203 GCACACTCATCCCTATGAATAGGTA 59.754 44.000 14.00 0.21 46.84 3.08
2731 2874 4.040952 GCACACTCATCCCTATGAATAGGT 59.959 45.833 14.00 0.00 46.84 3.08
2733 2876 4.993584 GTGCACACTCATCCCTATGAATAG 59.006 45.833 13.17 0.00 41.57 1.73
2734 2877 4.501400 CGTGCACACTCATCCCTATGAATA 60.501 45.833 18.64 0.00 41.57 1.75
2735 2878 3.742327 CGTGCACACTCATCCCTATGAAT 60.742 47.826 18.64 0.00 41.57 2.57
2736 2879 2.418609 CGTGCACACTCATCCCTATGAA 60.419 50.000 18.64 0.00 41.57 2.57
2737 2880 1.136891 CGTGCACACTCATCCCTATGA 59.863 52.381 18.64 0.00 39.87 2.15
2738 2881 1.575244 CGTGCACACTCATCCCTATG 58.425 55.000 18.64 0.00 0.00 2.23
2739 2882 0.179073 GCGTGCACACTCATCCCTAT 60.179 55.000 18.64 0.00 0.00 2.57
2740 2883 1.218047 GCGTGCACACTCATCCCTA 59.782 57.895 18.64 0.00 0.00 3.53
2741 2884 2.046892 GCGTGCACACTCATCCCT 60.047 61.111 18.64 0.00 0.00 4.20
2742 2885 1.746615 ATGCGTGCACACTCATCCC 60.747 57.895 18.64 0.00 31.78 3.85
2743 2886 1.300971 ACATGCGTGCACACTCATCC 61.301 55.000 18.64 0.00 34.84 3.51
2744 2887 0.518636 AACATGCGTGCACACTCATC 59.481 50.000 18.64 0.00 34.84 2.92
2745 2888 0.239082 CAACATGCGTGCACACTCAT 59.761 50.000 18.64 13.37 37.24 2.90
2746 2889 1.094650 ACAACATGCGTGCACACTCA 61.095 50.000 18.64 11.57 0.00 3.41
2747 2890 0.658244 CACAACATGCGTGCACACTC 60.658 55.000 18.64 5.72 0.00 3.51
2748 2891 1.356270 CACAACATGCGTGCACACT 59.644 52.632 18.64 0.00 0.00 3.55
2749 2892 1.063972 ACACAACATGCGTGCACAC 59.936 52.632 18.64 7.98 37.93 3.82
2750 2893 1.063811 CACACAACATGCGTGCACA 59.936 52.632 18.64 0.00 37.93 4.57
2751 2894 0.525242 AACACACAACATGCGTGCAC 60.525 50.000 6.82 6.82 34.01 4.57
2752 2895 0.172127 AAACACACAACATGCGTGCA 59.828 45.000 14.15 0.00 34.01 4.57
2753 2896 0.571661 CAAACACACAACATGCGTGC 59.428 50.000 14.15 0.00 34.01 5.34
2754 2897 0.571661 GCAAACACACAACATGCGTG 59.428 50.000 12.96 12.96 36.56 5.34
2755 2898 2.956469 GCAAACACACAACATGCGT 58.044 47.368 0.00 0.00 0.00 5.24
2757 2900 0.845768 GACGCAAACACACAACATGC 59.154 50.000 0.00 0.00 0.00 4.06
2758 2901 2.110990 CAGACGCAAACACACAACATG 58.889 47.619 0.00 0.00 0.00 3.21
2759 2902 1.742831 ACAGACGCAAACACACAACAT 59.257 42.857 0.00 0.00 0.00 2.71
2760 2903 1.160989 ACAGACGCAAACACACAACA 58.839 45.000 0.00 0.00 0.00 3.33
2761 2904 2.350498 AGTACAGACGCAAACACACAAC 59.650 45.455 0.00 0.00 0.00 3.32
2762 2905 2.350192 CAGTACAGACGCAAACACACAA 59.650 45.455 0.00 0.00 0.00 3.33
2763 2906 1.930503 CAGTACAGACGCAAACACACA 59.069 47.619 0.00 0.00 0.00 3.72
2764 2907 1.931172 ACAGTACAGACGCAAACACAC 59.069 47.619 0.00 0.00 0.00 3.82
2765 2908 1.930503 CACAGTACAGACGCAAACACA 59.069 47.619 0.00 0.00 0.00 3.72
2766 2909 1.931172 ACACAGTACAGACGCAAACAC 59.069 47.619 0.00 0.00 0.00 3.32
2767 2910 2.303163 ACACAGTACAGACGCAAACA 57.697 45.000 0.00 0.00 0.00 2.83
2768 2911 3.350912 CAAACACAGTACAGACGCAAAC 58.649 45.455 0.00 0.00 0.00 2.93
2769 2912 2.353269 CCAAACACAGTACAGACGCAAA 59.647 45.455 0.00 0.00 0.00 3.68
2770 2913 1.937223 CCAAACACAGTACAGACGCAA 59.063 47.619 0.00 0.00 0.00 4.85
2771 2914 1.137282 TCCAAACACAGTACAGACGCA 59.863 47.619 0.00 0.00 0.00 5.24
2772 2915 1.860676 TCCAAACACAGTACAGACGC 58.139 50.000 0.00 0.00 0.00 5.19
2773 2916 4.569162 TCTTTTCCAAACACAGTACAGACG 59.431 41.667 0.00 0.00 0.00 4.18
2774 2917 6.431198 TTCTTTTCCAAACACAGTACAGAC 57.569 37.500 0.00 0.00 0.00 3.51
2775 2918 7.455641 TTTTCTTTTCCAAACACAGTACAGA 57.544 32.000 0.00 0.00 0.00 3.41
2776 2919 7.596995 TGTTTTTCTTTTCCAAACACAGTACAG 59.403 33.333 0.00 0.00 35.88 2.74
2777 2920 7.434492 TGTTTTTCTTTTCCAAACACAGTACA 58.566 30.769 0.00 0.00 35.88 2.90
2778 2921 7.876896 TGTTTTTCTTTTCCAAACACAGTAC 57.123 32.000 0.00 0.00 35.88 2.73
2779 2922 7.486551 CGATGTTTTTCTTTTCCAAACACAGTA 59.513 33.333 0.00 0.00 41.85 2.74
2780 2923 6.310224 CGATGTTTTTCTTTTCCAAACACAGT 59.690 34.615 0.00 0.00 41.85 3.55
2781 2924 6.529829 TCGATGTTTTTCTTTTCCAAACACAG 59.470 34.615 0.00 0.00 41.85 3.66
2782 2925 6.390721 TCGATGTTTTTCTTTTCCAAACACA 58.609 32.000 0.00 0.00 41.85 3.72
2783 2926 6.879188 TCGATGTTTTTCTTTTCCAAACAC 57.121 33.333 0.00 0.00 41.85 3.32
2793 2936 9.653287 TGAGTCAAGTATATCGATGTTTTTCTT 57.347 29.630 8.54 2.54 0.00 2.52
2794 2937 9.823647 ATGAGTCAAGTATATCGATGTTTTTCT 57.176 29.630 8.54 1.78 0.00 2.52
2801 2944 9.071221 GCTCTAAATGAGTCAAGTATATCGATG 57.929 37.037 8.54 0.00 44.41 3.84
2802 2945 8.797438 TGCTCTAAATGAGTCAAGTATATCGAT 58.203 33.333 2.16 2.16 44.41 3.59
2803 2946 8.166422 TGCTCTAAATGAGTCAAGTATATCGA 57.834 34.615 0.00 0.00 44.41 3.59
2804 2947 8.978564 ATGCTCTAAATGAGTCAAGTATATCG 57.021 34.615 0.00 0.00 44.41 2.92
2808 2951 8.918116 TGTAGATGCTCTAAATGAGTCAAGTAT 58.082 33.333 0.00 0.00 44.41 2.12
2809 2952 8.293699 TGTAGATGCTCTAAATGAGTCAAGTA 57.706 34.615 0.00 0.00 44.41 2.24
2810 2953 7.175347 TGTAGATGCTCTAAATGAGTCAAGT 57.825 36.000 0.00 0.00 44.41 3.16
2811 2954 6.200665 GCTGTAGATGCTCTAAATGAGTCAAG 59.799 42.308 0.00 0.00 44.41 3.02
2812 2955 6.045318 GCTGTAGATGCTCTAAATGAGTCAA 58.955 40.000 0.00 0.00 44.41 3.18
2813 2956 5.362143 AGCTGTAGATGCTCTAAATGAGTCA 59.638 40.000 0.00 0.00 44.41 3.41
2814 2957 5.691305 CAGCTGTAGATGCTCTAAATGAGTC 59.309 44.000 5.25 0.00 44.41 3.36
2815 2958 5.453057 CCAGCTGTAGATGCTCTAAATGAGT 60.453 44.000 13.81 0.00 44.41 3.41
2816 2959 4.989797 CCAGCTGTAGATGCTCTAAATGAG 59.010 45.833 13.81 0.00 45.33 2.90
2817 2960 4.651045 TCCAGCTGTAGATGCTCTAAATGA 59.349 41.667 13.81 0.00 38.92 2.57
2818 2961 4.749099 GTCCAGCTGTAGATGCTCTAAATG 59.251 45.833 13.81 0.00 38.92 2.32
2819 2962 4.653341 AGTCCAGCTGTAGATGCTCTAAAT 59.347 41.667 13.81 0.00 38.92 1.40
2820 2963 4.026744 AGTCCAGCTGTAGATGCTCTAAA 58.973 43.478 13.81 0.00 38.92 1.85
2821 2964 3.636679 AGTCCAGCTGTAGATGCTCTAA 58.363 45.455 13.81 0.00 38.92 2.10
2822 2965 3.304911 AGTCCAGCTGTAGATGCTCTA 57.695 47.619 13.81 0.00 38.92 2.43
2823 2966 2.157640 AGTCCAGCTGTAGATGCTCT 57.842 50.000 13.81 0.00 38.92 4.09
2824 2967 2.548875 CAAGTCCAGCTGTAGATGCTC 58.451 52.381 13.81 0.00 38.92 4.26
2825 2968 1.209019 CCAAGTCCAGCTGTAGATGCT 59.791 52.381 13.81 0.00 42.06 3.79
2826 2969 1.065854 ACCAAGTCCAGCTGTAGATGC 60.066 52.381 13.81 0.00 0.00 3.91
2827 2970 4.471904 TTACCAAGTCCAGCTGTAGATG 57.528 45.455 13.81 6.41 0.00 2.90
2828 2971 5.396884 GGATTTACCAAGTCCAGCTGTAGAT 60.397 44.000 13.81 0.00 38.79 1.98
2829 2972 4.081087 GGATTTACCAAGTCCAGCTGTAGA 60.081 45.833 13.81 0.01 38.79 2.59
2830 2973 4.192317 GGATTTACCAAGTCCAGCTGTAG 58.808 47.826 13.81 0.00 38.79 2.74
2831 2974 3.369052 CGGATTTACCAAGTCCAGCTGTA 60.369 47.826 13.81 0.00 38.90 2.74
2832 2975 2.615493 CGGATTTACCAAGTCCAGCTGT 60.615 50.000 13.81 0.00 38.90 4.40
2833 2976 2.009774 CGGATTTACCAAGTCCAGCTG 58.990 52.381 6.78 6.78 38.90 4.24
2834 2977 1.906574 TCGGATTTACCAAGTCCAGCT 59.093 47.619 2.00 0.00 38.90 4.24
2835 2978 2.007608 GTCGGATTTACCAAGTCCAGC 58.992 52.381 2.00 0.00 38.90 4.85
2836 2979 2.629051 GGTCGGATTTACCAAGTCCAG 58.371 52.381 2.00 0.00 38.90 3.86
2837 2980 1.279846 GGGTCGGATTTACCAAGTCCA 59.720 52.381 2.00 0.00 38.87 4.02
2838 2981 1.407851 GGGGTCGGATTTACCAAGTCC 60.408 57.143 0.00 0.00 38.87 3.85
2839 2982 1.558294 AGGGGTCGGATTTACCAAGTC 59.442 52.381 0.00 0.00 38.87 3.01
2840 2983 1.558294 GAGGGGTCGGATTTACCAAGT 59.442 52.381 0.00 0.00 38.87 3.16
2841 2984 1.557832 TGAGGGGTCGGATTTACCAAG 59.442 52.381 0.00 0.00 38.87 3.61
2842 2985 1.659022 TGAGGGGTCGGATTTACCAA 58.341 50.000 0.00 0.00 38.87 3.67
2843 2986 1.659022 TTGAGGGGTCGGATTTACCA 58.341 50.000 0.00 0.00 38.87 3.25
2844 2987 2.362736 GTTTGAGGGGTCGGATTTACC 58.637 52.381 0.00 0.00 36.19 2.85
2845 2988 2.004733 CGTTTGAGGGGTCGGATTTAC 58.995 52.381 0.00 0.00 0.00 2.01
2846 2989 1.676615 GCGTTTGAGGGGTCGGATTTA 60.677 52.381 0.00 0.00 0.00 1.40
2847 2990 0.958876 GCGTTTGAGGGGTCGGATTT 60.959 55.000 0.00 0.00 0.00 2.17
2848 2991 1.376812 GCGTTTGAGGGGTCGGATT 60.377 57.895 0.00 0.00 0.00 3.01
2849 2992 2.267961 GCGTTTGAGGGGTCGGAT 59.732 61.111 0.00 0.00 0.00 4.18
2850 2993 4.011517 GGCGTTTGAGGGGTCGGA 62.012 66.667 0.00 0.00 0.00 4.55
2884 3027 2.016704 GTCACTGTCTGCGGACACG 61.017 63.158 24.54 20.66 46.19 4.49
2885 3028 1.664965 GGTCACTGTCTGCGGACAC 60.665 63.158 24.54 14.27 46.19 3.67
2887 3030 2.430921 CGGTCACTGTCTGCGGAC 60.431 66.667 19.20 19.20 42.42 4.79
2888 3031 3.680786 CCGGTCACTGTCTGCGGA 61.681 66.667 0.00 0.00 29.37 5.54
2889 3032 3.916392 GACCGGTCACTGTCTGCGG 62.916 68.421 29.75 0.00 33.10 5.69
2890 3033 2.430921 GACCGGTCACTGTCTGCG 60.431 66.667 29.75 0.00 0.00 5.18
2891 3034 1.016130 CATGACCGGTCACTGTCTGC 61.016 60.000 38.46 8.43 43.11 4.26
2892 3035 0.318441 ACATGACCGGTCACTGTCTG 59.682 55.000 38.46 31.43 43.11 3.51
2893 3036 0.603569 GACATGACCGGTCACTGTCT 59.396 55.000 38.81 26.87 43.11 3.41
2898 3041 2.163818 TTTGAGACATGACCGGTCAC 57.836 50.000 38.46 25.57 43.11 3.67
2899 3042 4.545208 TTATTTGAGACATGACCGGTCA 57.455 40.909 37.79 37.79 44.59 4.02
2904 3047 6.183360 TGGAATGCATTATTTGAGACATGACC 60.183 38.462 12.97 4.56 0.00 4.02
2906 3049 6.377712 TGTGGAATGCATTATTTGAGACATGA 59.622 34.615 12.97 0.00 0.00 3.07
2910 3053 6.916387 CAGATGTGGAATGCATTATTTGAGAC 59.084 38.462 12.97 0.00 0.00 3.36
2932 3075 7.510675 AGGTTTCTAATTTGAGGTATCCAGA 57.489 36.000 0.00 0.00 0.00 3.86
2938 3081 9.169592 CGGATTTTAGGTTTCTAATTTGAGGTA 57.830 33.333 0.00 0.00 35.61 3.08
2954 3097 7.410800 TGCGTGTAATAATACGGATTTTAGG 57.589 36.000 0.00 0.00 40.23 2.69
2957 3100 6.962678 GTGTTGCGTGTAATAATACGGATTTT 59.037 34.615 0.00 0.00 40.02 1.82
2964 3107 8.335356 AGATTGATGTGTTGCGTGTAATAATAC 58.665 33.333 0.00 0.00 0.00 1.89
2975 3118 4.853196 CCACTTAAAGATTGATGTGTTGCG 59.147 41.667 0.00 0.00 0.00 4.85
2980 3123 5.220548 CGAGCTCCACTTAAAGATTGATGTG 60.221 44.000 8.47 0.00 0.00 3.21
2981 3124 4.872691 CGAGCTCCACTTAAAGATTGATGT 59.127 41.667 8.47 0.00 0.00 3.06
2982 3125 4.872691 ACGAGCTCCACTTAAAGATTGATG 59.127 41.667 8.47 0.00 0.00 3.07
2983 3126 5.091261 ACGAGCTCCACTTAAAGATTGAT 57.909 39.130 8.47 0.00 0.00 2.57
2985 3128 3.619038 GGACGAGCTCCACTTAAAGATTG 59.381 47.826 8.47 0.00 39.21 2.67
2987 3130 2.159226 CGGACGAGCTCCACTTAAAGAT 60.159 50.000 8.47 0.00 39.39 2.40
2988 3131 1.201647 CGGACGAGCTCCACTTAAAGA 59.798 52.381 8.47 0.00 39.39 2.52
2989 3132 1.630148 CGGACGAGCTCCACTTAAAG 58.370 55.000 8.47 0.00 39.39 1.85
2990 3133 0.245539 CCGGACGAGCTCCACTTAAA 59.754 55.000 8.47 0.00 39.39 1.52
2991 3134 1.888018 CCGGACGAGCTCCACTTAA 59.112 57.895 8.47 0.00 39.39 1.85
3039 3191 1.374758 CAACACTCTGAGGGGCGTC 60.375 63.158 12.28 0.00 0.00 5.19
3040 3192 2.743718 CAACACTCTGAGGGGCGT 59.256 61.111 12.28 0.00 0.00 5.68
3041 3193 2.046892 CCAACACTCTGAGGGGCG 60.047 66.667 12.28 1.31 0.00 6.13
3044 3196 0.320771 CCGAACCAACACTCTGAGGG 60.321 60.000 5.13 5.13 0.00 4.30
3064 3216 1.664321 CTACTCTACCTTGCCGGCGT 61.664 60.000 23.90 16.49 35.61 5.68
3079 3231 1.133976 GCTCATGTTCCATGCCCTACT 60.134 52.381 0.00 0.00 0.00 2.57
3085 3237 3.113745 CCGGCTCATGTTCCATGC 58.886 61.111 0.00 0.00 0.00 4.06
3086 3238 1.442526 GAGCCGGCTCATGTTCCATG 61.443 60.000 44.10 0.00 42.31 3.66
3099 3251 1.153939 CTTGAGTCTCGTGAGCCGG 60.154 63.158 0.00 0.00 37.11 6.13
3100 3252 1.153939 CCTTGAGTCTCGTGAGCCG 60.154 63.158 0.00 0.00 38.13 5.52
3109 3261 2.143594 GACGACGGTGCCTTGAGTCT 62.144 60.000 0.00 0.00 0.00 3.24
3120 3272 3.771160 GGCATGGGAGACGACGGT 61.771 66.667 0.00 0.00 0.00 4.83
3124 3276 0.755698 GAGTAGGGCATGGGAGACGA 60.756 60.000 0.00 0.00 0.00 4.20
3125 3277 0.757188 AGAGTAGGGCATGGGAGACG 60.757 60.000 0.00 0.00 0.00 4.18
3180 3339 3.919216 AGGACGAATTCATCATCGATCC 58.081 45.455 3.65 5.64 41.43 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.