Multiple sequence alignment - TraesCS4D01G019700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G019700 chr4D 100.000 3315 0 0 1 3315 8438144 8434830 0.000000e+00 6122
1 TraesCS4D01G019700 chr4D 92.496 2865 154 33 468 3315 103551515 103554335 0.000000e+00 4043
2 TraesCS4D01G019700 chr4D 90.517 464 38 3 1 462 12225567 12225108 2.830000e-170 608
3 TraesCS4D01G019700 chr1A 92.270 2859 185 24 467 3315 93052890 93050058 0.000000e+00 4023
4 TraesCS4D01G019700 chr3B 92.223 2816 168 31 459 3258 559345526 559348306 0.000000e+00 3940
5 TraesCS4D01G019700 chr3B 91.379 464 37 3 1 462 494778064 494778526 1.680000e-177 632
6 TraesCS4D01G019700 chr3A 94.125 2417 130 12 588 2998 557916535 557914125 0.000000e+00 3666
7 TraesCS4D01G019700 chr6A 90.726 2631 177 24 701 3314 304292107 304294687 0.000000e+00 3445
8 TraesCS4D01G019700 chr6A 91.886 1750 122 15 1571 3315 364206972 364208706 0.000000e+00 2427
9 TraesCS4D01G019700 chr3D 94.260 1812 83 10 1507 3315 59190670 59192463 0.000000e+00 2750
10 TraesCS4D01G019700 chr3D 92.807 1571 89 12 453 2016 427821516 427823069 0.000000e+00 2254
11 TraesCS4D01G019700 chr3D 93.871 979 39 12 2355 3315 427841911 427842886 0.000000e+00 1456
12 TraesCS4D01G019700 chr3D 91.266 458 37 2 6 462 108469521 108469976 3.630000e-174 621
13 TraesCS4D01G019700 chr7D 94.072 1822 85 14 1499 3315 217694658 217696461 0.000000e+00 2745
14 TraesCS4D01G019700 chr7D 92.009 463 33 3 1 462 448662026 448662485 0.000000e+00 647
15 TraesCS4D01G019700 chr7D 91.577 463 35 4 1 462 378099140 378099599 1.300000e-178 636
16 TraesCS4D01G019700 chr7D 90.538 465 39 3 1 462 621396763 621397225 7.860000e-171 610
17 TraesCS4D01G019700 chr4B 88.308 1856 181 17 472 2301 529152035 529150190 0.000000e+00 2193
18 TraesCS4D01G019700 chr4B 93.826 826 37 7 2494 3315 363367629 363368444 0.000000e+00 1230
19 TraesCS4D01G019700 chr4B 93.229 827 43 9 2494 3315 529149987 529149169 0.000000e+00 1205
20 TraesCS4D01G019700 chr7A 88.229 1835 186 19 462 2284 235151224 235153040 0.000000e+00 2165
21 TraesCS4D01G019700 chr7B 92.433 1533 83 17 1800 3315 564603259 564604775 0.000000e+00 2158
22 TraesCS4D01G019700 chr1B 89.139 1685 138 23 649 2302 240546578 240544908 0.000000e+00 2056
23 TraesCS4D01G019700 chr2B 88.868 1069 86 9 461 1521 594122076 594123119 0.000000e+00 1284
24 TraesCS4D01G019700 chr2B 89.252 214 21 2 462 674 697046061 697045849 1.960000e-67 267
25 TraesCS4D01G019700 chr2B 89.163 203 22 0 461 663 232324468 232324266 1.530000e-63 254
26 TraesCS4D01G019700 chr6D 91.106 461 38 3 4 462 302068899 302068440 3.630000e-174 621
27 TraesCS4D01G019700 chr2D 90.850 459 39 2 1 458 39328410 39328866 2.190000e-171 612
28 TraesCS4D01G019700 chr5A 90.672 461 40 3 4 462 71117677 71117218 7.860000e-171 610
29 TraesCS4D01G019700 chr5B 87.850 214 24 2 462 674 383288504 383288292 1.970000e-62 250


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G019700 chr4D 8434830 8438144 3314 True 6122 6122 100.0000 1 3315 1 chr4D.!!$R1 3314
1 TraesCS4D01G019700 chr4D 103551515 103554335 2820 False 4043 4043 92.4960 468 3315 1 chr4D.!!$F1 2847
2 TraesCS4D01G019700 chr1A 93050058 93052890 2832 True 4023 4023 92.2700 467 3315 1 chr1A.!!$R1 2848
3 TraesCS4D01G019700 chr3B 559345526 559348306 2780 False 3940 3940 92.2230 459 3258 1 chr3B.!!$F2 2799
4 TraesCS4D01G019700 chr3A 557914125 557916535 2410 True 3666 3666 94.1250 588 2998 1 chr3A.!!$R1 2410
5 TraesCS4D01G019700 chr6A 304292107 304294687 2580 False 3445 3445 90.7260 701 3314 1 chr6A.!!$F1 2613
6 TraesCS4D01G019700 chr6A 364206972 364208706 1734 False 2427 2427 91.8860 1571 3315 1 chr6A.!!$F2 1744
7 TraesCS4D01G019700 chr3D 59190670 59192463 1793 False 2750 2750 94.2600 1507 3315 1 chr3D.!!$F1 1808
8 TraesCS4D01G019700 chr3D 427821516 427823069 1553 False 2254 2254 92.8070 453 2016 1 chr3D.!!$F3 1563
9 TraesCS4D01G019700 chr3D 427841911 427842886 975 False 1456 1456 93.8710 2355 3315 1 chr3D.!!$F4 960
10 TraesCS4D01G019700 chr7D 217694658 217696461 1803 False 2745 2745 94.0720 1499 3315 1 chr7D.!!$F1 1816
11 TraesCS4D01G019700 chr4B 529149169 529152035 2866 True 1699 2193 90.7685 472 3315 2 chr4B.!!$R1 2843
12 TraesCS4D01G019700 chr4B 363367629 363368444 815 False 1230 1230 93.8260 2494 3315 1 chr4B.!!$F1 821
13 TraesCS4D01G019700 chr7A 235151224 235153040 1816 False 2165 2165 88.2290 462 2284 1 chr7A.!!$F1 1822
14 TraesCS4D01G019700 chr7B 564603259 564604775 1516 False 2158 2158 92.4330 1800 3315 1 chr7B.!!$F1 1515
15 TraesCS4D01G019700 chr1B 240544908 240546578 1670 True 2056 2056 89.1390 649 2302 1 chr1B.!!$R1 1653
16 TraesCS4D01G019700 chr2B 594122076 594123119 1043 False 1284 1284 88.8680 461 1521 1 chr2B.!!$F1 1060

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
606 615 0.174845 CGTCGGGTCAATGCCTTAGA 59.825 55.0 0.00 0.0 0.00 2.10 F
679 739 0.768221 AACTCTGAGAGTGGGGCCAA 60.768 55.0 16.95 0.0 42.59 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2287 2452 1.645710 GAAGGGGAGTCAGGACTTCA 58.354 55.000 9.81 0.0 42.66 3.02 R
2350 2558 3.689161 TCCAGTTCACACACAAAGTTCAG 59.311 43.478 0.00 0.0 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.997899 CGAGCATCCCCAAGCTTAG 58.002 57.895 0.00 0.00 42.04 2.18
19 20 0.533755 CGAGCATCCCCAAGCTTAGG 60.534 60.000 3.60 3.60 42.04 2.69
20 21 0.821301 GAGCATCCCCAAGCTTAGGC 60.821 60.000 5.25 0.00 42.04 3.93
39 40 2.293170 GCTCTTGCCACTCCTTATTCC 58.707 52.381 0.00 0.00 0.00 3.01
40 41 2.092699 GCTCTTGCCACTCCTTATTCCT 60.093 50.000 0.00 0.00 0.00 3.36
41 42 3.623453 GCTCTTGCCACTCCTTATTCCTT 60.623 47.826 0.00 0.00 0.00 3.36
42 43 4.195416 CTCTTGCCACTCCTTATTCCTTC 58.805 47.826 0.00 0.00 0.00 3.46
43 44 3.587061 TCTTGCCACTCCTTATTCCTTCA 59.413 43.478 0.00 0.00 0.00 3.02
44 45 4.228210 TCTTGCCACTCCTTATTCCTTCAT 59.772 41.667 0.00 0.00 0.00 2.57
45 46 4.156455 TGCCACTCCTTATTCCTTCATC 57.844 45.455 0.00 0.00 0.00 2.92
46 47 3.117888 TGCCACTCCTTATTCCTTCATCC 60.118 47.826 0.00 0.00 0.00 3.51
47 48 3.117888 GCCACTCCTTATTCCTTCATCCA 60.118 47.826 0.00 0.00 0.00 3.41
48 49 4.446889 GCCACTCCTTATTCCTTCATCCAT 60.447 45.833 0.00 0.00 0.00 3.41
49 50 5.312079 CCACTCCTTATTCCTTCATCCATC 58.688 45.833 0.00 0.00 0.00 3.51
50 51 4.993584 CACTCCTTATTCCTTCATCCATCG 59.006 45.833 0.00 0.00 0.00 3.84
51 52 4.656112 ACTCCTTATTCCTTCATCCATCGT 59.344 41.667 0.00 0.00 0.00 3.73
52 53 4.960938 TCCTTATTCCTTCATCCATCGTG 58.039 43.478 0.00 0.00 0.00 4.35
53 54 4.653801 TCCTTATTCCTTCATCCATCGTGA 59.346 41.667 0.00 0.00 0.00 4.35
54 55 4.993584 CCTTATTCCTTCATCCATCGTGAG 59.006 45.833 0.00 0.00 0.00 3.51
55 56 2.315925 TTCCTTCATCCATCGTGAGC 57.684 50.000 0.00 0.00 0.00 4.26
56 57 1.489481 TCCTTCATCCATCGTGAGCT 58.511 50.000 0.00 0.00 0.00 4.09
57 58 1.410517 TCCTTCATCCATCGTGAGCTC 59.589 52.381 6.82 6.82 0.00 4.09
58 59 1.137675 CCTTCATCCATCGTGAGCTCA 59.862 52.381 13.74 13.74 0.00 4.26
59 60 2.200067 CTTCATCCATCGTGAGCTCAC 58.800 52.381 32.73 32.73 43.15 3.51
60 61 0.461548 TCATCCATCGTGAGCTCACC 59.538 55.000 35.07 20.42 43.66 4.02
61 62 0.531532 CATCCATCGTGAGCTCACCC 60.532 60.000 35.07 16.74 43.66 4.61
62 63 0.977627 ATCCATCGTGAGCTCACCCA 60.978 55.000 35.07 24.56 43.66 4.51
63 64 1.191489 TCCATCGTGAGCTCACCCAA 61.191 55.000 35.07 23.31 43.66 4.12
64 65 0.321564 CCATCGTGAGCTCACCCAAA 60.322 55.000 35.07 21.06 43.66 3.28
65 66 1.522668 CATCGTGAGCTCACCCAAAA 58.477 50.000 35.07 18.84 43.66 2.44
66 67 1.197721 CATCGTGAGCTCACCCAAAAC 59.802 52.381 35.07 13.90 43.66 2.43
67 68 0.468226 TCGTGAGCTCACCCAAAACT 59.532 50.000 35.07 0.00 43.66 2.66
68 69 1.134220 TCGTGAGCTCACCCAAAACTT 60.134 47.619 35.07 0.00 43.66 2.66
69 70 1.002468 CGTGAGCTCACCCAAAACTTG 60.002 52.381 35.07 17.60 43.66 3.16
70 71 2.297701 GTGAGCTCACCCAAAACTTGA 58.702 47.619 32.55 0.00 40.85 3.02
71 72 2.687935 GTGAGCTCACCCAAAACTTGAA 59.312 45.455 32.55 0.00 40.85 2.69
72 73 3.130340 GTGAGCTCACCCAAAACTTGAAA 59.870 43.478 32.55 0.00 40.85 2.69
73 74 3.766591 TGAGCTCACCCAAAACTTGAAAA 59.233 39.130 13.74 0.00 0.00 2.29
74 75 4.112634 GAGCTCACCCAAAACTTGAAAAC 58.887 43.478 9.40 0.00 0.00 2.43
75 76 3.769300 AGCTCACCCAAAACTTGAAAACT 59.231 39.130 0.00 0.00 0.00 2.66
76 77 4.222810 AGCTCACCCAAAACTTGAAAACTT 59.777 37.500 0.00 0.00 0.00 2.66
77 78 4.566759 GCTCACCCAAAACTTGAAAACTTC 59.433 41.667 0.00 0.00 0.00 3.01
78 79 5.719173 CTCACCCAAAACTTGAAAACTTCA 58.281 37.500 0.00 0.00 38.04 3.02
79 80 6.102897 TCACCCAAAACTTGAAAACTTCAA 57.897 33.333 2.12 2.12 46.68 2.69
93 94 9.698309 TTGAAAACTTCAATCACACAAAACTAA 57.302 25.926 0.00 0.00 44.21 2.24
94 95 9.698309 TGAAAACTTCAATCACACAAAACTAAA 57.302 25.926 0.00 0.00 36.59 1.85
95 96 9.952341 GAAAACTTCAATCACACAAAACTAAAC 57.048 29.630 0.00 0.00 0.00 2.01
96 97 9.482627 AAAACTTCAATCACACAAAACTAAACA 57.517 25.926 0.00 0.00 0.00 2.83
97 98 9.482627 AAACTTCAATCACACAAAACTAAACAA 57.517 25.926 0.00 0.00 0.00 2.83
98 99 9.482627 AACTTCAATCACACAAAACTAAACAAA 57.517 25.926 0.00 0.00 0.00 2.83
99 100 9.482627 ACTTCAATCACACAAAACTAAACAAAA 57.517 25.926 0.00 0.00 0.00 2.44
102 103 9.092876 TCAATCACACAAAACTAAACAAAATCC 57.907 29.630 0.00 0.00 0.00 3.01
103 104 9.097257 CAATCACACAAAACTAAACAAAATCCT 57.903 29.630 0.00 0.00 0.00 3.24
104 105 8.871686 ATCACACAAAACTAAACAAAATCCTC 57.128 30.769 0.00 0.00 0.00 3.71
105 106 6.970043 TCACACAAAACTAAACAAAATCCTCG 59.030 34.615 0.00 0.00 0.00 4.63
106 107 6.750039 CACACAAAACTAAACAAAATCCTCGT 59.250 34.615 0.00 0.00 0.00 4.18
107 108 6.750039 ACACAAAACTAAACAAAATCCTCGTG 59.250 34.615 0.00 0.00 0.00 4.35
108 109 6.970043 CACAAAACTAAACAAAATCCTCGTGA 59.030 34.615 0.00 0.00 0.00 4.35
109 110 7.165812 CACAAAACTAAACAAAATCCTCGTGAG 59.834 37.037 0.00 0.00 0.00 3.51
110 111 7.066525 ACAAAACTAAACAAAATCCTCGTGAGA 59.933 33.333 0.00 0.00 39.12 3.27
111 112 7.745620 AAACTAAACAAAATCCTCGTGAGAT 57.254 32.000 0.00 0.00 40.84 2.75
112 113 6.969828 ACTAAACAAAATCCTCGTGAGATC 57.030 37.500 0.00 0.00 40.84 2.75
113 114 5.875359 ACTAAACAAAATCCTCGTGAGATCC 59.125 40.000 0.00 0.00 40.84 3.36
114 115 2.893637 ACAAAATCCTCGTGAGATCCG 58.106 47.619 0.00 0.00 40.84 4.18
115 116 2.233922 ACAAAATCCTCGTGAGATCCGT 59.766 45.455 0.00 0.00 40.84 4.69
116 117 3.262420 CAAAATCCTCGTGAGATCCGTT 58.738 45.455 0.00 0.00 40.84 4.44
117 118 4.081862 ACAAAATCCTCGTGAGATCCGTTA 60.082 41.667 0.00 0.00 40.84 3.18
118 119 3.992260 AATCCTCGTGAGATCCGTTAG 57.008 47.619 0.00 0.00 40.84 2.34
119 120 2.414994 TCCTCGTGAGATCCGTTAGT 57.585 50.000 0.00 0.00 40.84 2.24
120 121 3.548745 TCCTCGTGAGATCCGTTAGTA 57.451 47.619 0.00 0.00 40.84 1.82
121 122 4.082665 TCCTCGTGAGATCCGTTAGTAT 57.917 45.455 0.00 0.00 40.84 2.12
122 123 5.219343 TCCTCGTGAGATCCGTTAGTATA 57.781 43.478 0.00 0.00 40.84 1.47
123 124 5.614308 TCCTCGTGAGATCCGTTAGTATAA 58.386 41.667 0.00 0.00 40.84 0.98
124 125 6.236409 TCCTCGTGAGATCCGTTAGTATAAT 58.764 40.000 0.00 0.00 40.84 1.28
125 126 6.148976 TCCTCGTGAGATCCGTTAGTATAATG 59.851 42.308 0.00 0.00 40.84 1.90
126 127 6.148976 CCTCGTGAGATCCGTTAGTATAATGA 59.851 42.308 0.00 0.00 40.84 2.57
127 128 7.308408 CCTCGTGAGATCCGTTAGTATAATGAA 60.308 40.741 0.00 0.00 40.84 2.57
128 129 7.582352 TCGTGAGATCCGTTAGTATAATGAAG 58.418 38.462 0.00 0.00 33.31 3.02
129 130 6.305877 CGTGAGATCCGTTAGTATAATGAAGC 59.694 42.308 0.00 0.00 0.00 3.86
130 131 7.145985 GTGAGATCCGTTAGTATAATGAAGCA 58.854 38.462 0.00 0.00 0.00 3.91
131 132 7.652105 GTGAGATCCGTTAGTATAATGAAGCAA 59.348 37.037 0.00 0.00 0.00 3.91
132 133 8.201464 TGAGATCCGTTAGTATAATGAAGCAAA 58.799 33.333 0.00 0.00 0.00 3.68
133 134 9.209175 GAGATCCGTTAGTATAATGAAGCAAAT 57.791 33.333 0.00 0.00 0.00 2.32
134 135 9.561069 AGATCCGTTAGTATAATGAAGCAAATT 57.439 29.630 0.00 0.00 0.00 1.82
160 161 7.443259 TCACTTTAAGTACTATTGCAAACCC 57.557 36.000 1.71 0.00 0.00 4.11
161 162 6.999272 TCACTTTAAGTACTATTGCAAACCCA 59.001 34.615 1.71 0.00 0.00 4.51
162 163 7.668052 TCACTTTAAGTACTATTGCAAACCCAT 59.332 33.333 1.71 0.00 0.00 4.00
163 164 8.303876 CACTTTAAGTACTATTGCAAACCCATT 58.696 33.333 1.71 0.00 0.00 3.16
164 165 8.520351 ACTTTAAGTACTATTGCAAACCCATTC 58.480 33.333 1.71 0.00 0.00 2.67
165 166 8.410673 TTTAAGTACTATTGCAAACCCATTCA 57.589 30.769 1.71 0.00 0.00 2.57
166 167 5.897377 AGTACTATTGCAAACCCATTCAC 57.103 39.130 1.71 0.00 0.00 3.18
167 168 5.321102 AGTACTATTGCAAACCCATTCACA 58.679 37.500 1.71 0.00 0.00 3.58
168 169 5.951747 AGTACTATTGCAAACCCATTCACAT 59.048 36.000 1.71 0.00 0.00 3.21
169 170 5.743636 ACTATTGCAAACCCATTCACATT 57.256 34.783 1.71 0.00 0.00 2.71
170 171 6.112927 ACTATTGCAAACCCATTCACATTT 57.887 33.333 1.71 0.00 0.00 2.32
171 172 6.532826 ACTATTGCAAACCCATTCACATTTT 58.467 32.000 1.71 0.00 0.00 1.82
172 173 7.675062 ACTATTGCAAACCCATTCACATTTTA 58.325 30.769 1.71 0.00 0.00 1.52
173 174 8.320617 ACTATTGCAAACCCATTCACATTTTAT 58.679 29.630 1.71 0.00 0.00 1.40
174 175 7.999450 ATTGCAAACCCATTCACATTTTATT 57.001 28.000 1.71 0.00 0.00 1.40
175 176 7.814264 TTGCAAACCCATTCACATTTTATTT 57.186 28.000 0.00 0.00 0.00 1.40
176 177 7.814264 TGCAAACCCATTCACATTTTATTTT 57.186 28.000 0.00 0.00 0.00 1.82
177 178 8.230472 TGCAAACCCATTCACATTTTATTTTT 57.770 26.923 0.00 0.00 0.00 1.94
178 179 8.133627 TGCAAACCCATTCACATTTTATTTTTG 58.866 29.630 0.00 0.00 0.00 2.44
179 180 7.114670 GCAAACCCATTCACATTTTATTTTTGC 59.885 33.333 0.00 0.00 37.75 3.68
180 181 7.814264 AACCCATTCACATTTTATTTTTGCA 57.186 28.000 0.00 0.00 0.00 4.08
181 182 7.999450 ACCCATTCACATTTTATTTTTGCAT 57.001 28.000 0.00 0.00 0.00 3.96
182 183 8.406730 ACCCATTCACATTTTATTTTTGCATT 57.593 26.923 0.00 0.00 0.00 3.56
183 184 8.298140 ACCCATTCACATTTTATTTTTGCATTG 58.702 29.630 0.00 0.00 0.00 2.82
184 185 8.298140 CCCATTCACATTTTATTTTTGCATTGT 58.702 29.630 0.00 0.00 0.00 2.71
188 189 8.830201 TCACATTTTATTTTTGCATTGTAGCT 57.170 26.923 0.00 0.00 34.99 3.32
189 190 9.920133 TCACATTTTATTTTTGCATTGTAGCTA 57.080 25.926 0.00 0.00 34.99 3.32
190 191 9.956797 CACATTTTATTTTTGCATTGTAGCTAC 57.043 29.630 17.30 17.30 34.99 3.58
191 192 9.927668 ACATTTTATTTTTGCATTGTAGCTACT 57.072 25.926 23.84 2.44 34.99 2.57
193 194 9.927668 ATTTTATTTTTGCATTGTAGCTACTGT 57.072 25.926 23.84 10.22 34.99 3.55
198 199 9.927668 ATTTTTGCATTGTAGCTACTGTATTTT 57.072 25.926 23.84 0.00 34.99 1.82
201 202 9.834628 TTTGCATTGTAGCTACTGTATTTTAAC 57.165 29.630 23.84 0.00 34.99 2.01
202 203 8.786826 TGCATTGTAGCTACTGTATTTTAACT 57.213 30.769 23.84 0.00 34.99 2.24
203 204 9.226606 TGCATTGTAGCTACTGTATTTTAACTT 57.773 29.630 23.84 0.00 34.99 2.66
204 205 9.704098 GCATTGTAGCTACTGTATTTTAACTTC 57.296 33.333 23.84 0.00 0.00 3.01
212 213 8.766151 GCTACTGTATTTTAACTTCTCTATGGC 58.234 37.037 0.00 0.00 0.00 4.40
221 222 9.609346 TTTTAACTTCTCTATGGCTTATACCAC 57.391 33.333 0.00 0.00 44.17 4.16
222 223 8.548880 TTAACTTCTCTATGGCTTATACCACT 57.451 34.615 0.00 0.00 44.17 4.00
223 224 6.412362 ACTTCTCTATGGCTTATACCACTG 57.588 41.667 0.00 0.00 44.17 3.66
224 225 6.136857 ACTTCTCTATGGCTTATACCACTGA 58.863 40.000 0.00 0.00 44.17 3.41
225 226 6.784969 ACTTCTCTATGGCTTATACCACTGAT 59.215 38.462 0.00 0.00 44.17 2.90
226 227 7.950684 ACTTCTCTATGGCTTATACCACTGATA 59.049 37.037 0.00 0.00 44.17 2.15
227 228 7.704578 TCTCTATGGCTTATACCACTGATAC 57.295 40.000 0.00 0.00 44.17 2.24
228 229 7.238710 TCTCTATGGCTTATACCACTGATACA 58.761 38.462 0.00 0.00 44.17 2.29
229 230 7.728532 TCTCTATGGCTTATACCACTGATACAA 59.271 37.037 0.00 0.00 44.17 2.41
230 231 8.435931 TCTATGGCTTATACCACTGATACAAT 57.564 34.615 0.00 0.00 44.17 2.71
231 232 8.531982 TCTATGGCTTATACCACTGATACAATC 58.468 37.037 0.00 0.00 44.17 2.67
232 233 5.538118 TGGCTTATACCACTGATACAATCG 58.462 41.667 0.00 0.00 33.75 3.34
233 234 4.929808 GGCTTATACCACTGATACAATCGG 59.070 45.833 0.00 0.00 41.49 4.18
235 236 6.294899 GGCTTATACCACTGATACAATCGGTA 60.295 42.308 1.19 0.00 46.75 4.02
236 237 6.807230 GCTTATACCACTGATACAATCGGTAG 59.193 42.308 1.19 0.00 46.75 3.18
237 238 7.523380 GCTTATACCACTGATACAATCGGTAGT 60.523 40.741 1.19 3.58 46.75 2.73
238 239 6.726490 ATACCACTGATACAATCGGTAGTT 57.274 37.500 5.48 0.00 46.75 2.24
239 240 5.416271 ACCACTGATACAATCGGTAGTTT 57.584 39.130 1.19 0.00 46.75 2.66
240 241 5.416947 ACCACTGATACAATCGGTAGTTTC 58.583 41.667 1.19 0.00 46.75 2.78
241 242 5.046878 ACCACTGATACAATCGGTAGTTTCA 60.047 40.000 1.19 0.00 46.75 2.69
242 243 6.049149 CCACTGATACAATCGGTAGTTTCAT 58.951 40.000 1.19 0.00 46.75 2.57
243 244 6.201044 CCACTGATACAATCGGTAGTTTCATC 59.799 42.308 1.19 0.00 46.75 2.92
244 245 6.756542 CACTGATACAATCGGTAGTTTCATCA 59.243 38.462 1.19 0.00 46.75 3.07
245 246 7.277760 CACTGATACAATCGGTAGTTTCATCAA 59.722 37.037 1.19 0.00 46.75 2.57
246 247 7.822334 ACTGATACAATCGGTAGTTTCATCAAA 59.178 33.333 0.00 0.00 46.62 2.69
247 248 8.554835 TGATACAATCGGTAGTTTCATCAAAA 57.445 30.769 0.00 0.00 34.92 2.44
248 249 8.447833 TGATACAATCGGTAGTTTCATCAAAAC 58.552 33.333 0.00 0.00 46.36 2.43
261 262 8.095287 GTTTCATCAAAACAAGCAAAACAATG 57.905 30.769 0.00 0.00 45.49 2.82
262 263 5.808403 TCATCAAAACAAGCAAAACAATGC 58.192 33.333 0.00 0.00 46.78 3.56
274 275 5.808403 GCAAAACAATGCATCAAAAACAGA 58.192 33.333 0.00 0.00 45.70 3.41
275 276 6.256686 GCAAAACAATGCATCAAAAACAGAA 58.743 32.000 0.00 0.00 45.70 3.02
276 277 6.913673 GCAAAACAATGCATCAAAAACAGAAT 59.086 30.769 0.00 0.00 45.70 2.40
277 278 7.432838 GCAAAACAATGCATCAAAAACAGAATT 59.567 29.630 0.00 0.00 45.70 2.17
278 279 9.291664 CAAAACAATGCATCAAAAACAGAATTT 57.708 25.926 0.00 0.00 0.00 1.82
279 280 8.844441 AAACAATGCATCAAAAACAGAATTTG 57.156 26.923 0.00 0.00 38.76 2.32
280 281 7.556733 ACAATGCATCAAAAACAGAATTTGT 57.443 28.000 0.00 0.00 43.45 2.83
281 282 7.632721 ACAATGCATCAAAAACAGAATTTGTC 58.367 30.769 0.00 0.00 39.73 3.18
282 283 7.496591 ACAATGCATCAAAAACAGAATTTGTCT 59.503 29.630 0.00 0.00 39.73 3.41
283 284 8.339714 CAATGCATCAAAAACAGAATTTGTCTT 58.660 29.630 0.00 0.00 39.73 3.01
284 285 9.545105 AATGCATCAAAAACAGAATTTGTCTTA 57.455 25.926 0.00 0.00 39.73 2.10
285 286 8.939201 TGCATCAAAAACAGAATTTGTCTTAA 57.061 26.923 0.00 0.00 39.73 1.85
286 287 9.376075 TGCATCAAAAACAGAATTTGTCTTAAA 57.624 25.926 0.00 0.00 39.73 1.52
287 288 9.636965 GCATCAAAAACAGAATTTGTCTTAAAC 57.363 29.630 0.00 0.00 39.73 2.01
293 294 9.921637 AAAACAGAATTTGTCTTAAACAGAACA 57.078 25.926 0.00 0.00 39.73 3.18
294 295 9.573133 AAACAGAATTTGTCTTAAACAGAACAG 57.427 29.630 0.00 0.00 39.73 3.16
295 296 8.281212 ACAGAATTTGTCTTAAACAGAACAGT 57.719 30.769 0.00 0.00 39.58 3.55
296 297 8.398665 ACAGAATTTGTCTTAAACAGAACAGTC 58.601 33.333 0.00 0.00 39.58 3.51
297 298 8.616076 CAGAATTTGTCTTAAACAGAACAGTCT 58.384 33.333 0.00 0.00 39.58 3.24
298 299 8.616076 AGAATTTGTCTTAAACAGAACAGTCTG 58.384 33.333 0.00 0.00 45.15 3.51
309 310 4.814147 CAGAACAGTCTGTAGCAATCTGA 58.186 43.478 20.15 0.00 45.44 3.27
310 311 5.233225 CAGAACAGTCTGTAGCAATCTGAA 58.767 41.667 20.15 0.00 45.44 3.02
311 312 5.119898 CAGAACAGTCTGTAGCAATCTGAAC 59.880 44.000 20.15 0.00 45.44 3.18
312 313 4.607293 ACAGTCTGTAGCAATCTGAACA 57.393 40.909 2.87 0.00 0.00 3.18
313 314 5.157940 ACAGTCTGTAGCAATCTGAACAT 57.842 39.130 2.87 0.00 0.00 2.71
314 315 5.555017 ACAGTCTGTAGCAATCTGAACATT 58.445 37.500 2.87 0.00 0.00 2.71
315 316 6.000219 ACAGTCTGTAGCAATCTGAACATTT 59.000 36.000 2.87 0.00 0.00 2.32
316 317 7.161404 ACAGTCTGTAGCAATCTGAACATTTA 58.839 34.615 2.87 0.00 0.00 1.40
317 318 7.118390 ACAGTCTGTAGCAATCTGAACATTTAC 59.882 37.037 2.87 0.00 0.00 2.01
318 319 6.595716 AGTCTGTAGCAATCTGAACATTTACC 59.404 38.462 0.00 0.00 0.00 2.85
319 320 6.371548 GTCTGTAGCAATCTGAACATTTACCA 59.628 38.462 0.00 0.00 0.00 3.25
320 321 7.066284 GTCTGTAGCAATCTGAACATTTACCAT 59.934 37.037 0.00 0.00 0.00 3.55
321 322 8.264347 TCTGTAGCAATCTGAACATTTACCATA 58.736 33.333 0.00 0.00 0.00 2.74
322 323 8.208718 TGTAGCAATCTGAACATTTACCATAC 57.791 34.615 0.00 0.00 0.00 2.39
323 324 8.046708 TGTAGCAATCTGAACATTTACCATACT 58.953 33.333 0.00 0.00 0.00 2.12
324 325 7.944729 AGCAATCTGAACATTTACCATACTT 57.055 32.000 0.00 0.00 0.00 2.24
326 327 9.632638 AGCAATCTGAACATTTACCATACTTAT 57.367 29.630 0.00 0.00 0.00 1.73
327 328 9.669353 GCAATCTGAACATTTACCATACTTATG 57.331 33.333 0.00 0.00 0.00 1.90
377 378 9.030452 AGGACAAAATAAACAATTGGTATAGCA 57.970 29.630 10.83 0.00 0.00 3.49
378 379 9.646427 GGACAAAATAAACAATTGGTATAGCAA 57.354 29.630 18.95 18.95 0.00 3.91
398 399 6.304788 GCAATACTATGCAAAACGTTTCAG 57.695 37.500 15.01 11.24 45.70 3.02
399 400 6.083630 GCAATACTATGCAAAACGTTTCAGA 58.916 36.000 15.01 5.47 45.70 3.27
400 401 6.580791 GCAATACTATGCAAAACGTTTCAGAA 59.419 34.615 15.01 5.26 45.70 3.02
401 402 7.201266 GCAATACTATGCAAAACGTTTCAGAAG 60.201 37.037 15.01 12.22 45.70 2.85
402 403 4.537015 ACTATGCAAAACGTTTCAGAAGC 58.463 39.130 15.01 13.37 0.00 3.86
403 404 2.202295 TGCAAAACGTTTCAGAAGCC 57.798 45.000 15.01 0.00 0.00 4.35
404 405 1.748493 TGCAAAACGTTTCAGAAGCCT 59.252 42.857 15.01 0.00 0.00 4.58
405 406 2.165437 TGCAAAACGTTTCAGAAGCCTT 59.835 40.909 15.01 0.00 0.00 4.35
406 407 3.186909 GCAAAACGTTTCAGAAGCCTTT 58.813 40.909 15.01 0.00 0.00 3.11
407 408 3.000222 GCAAAACGTTTCAGAAGCCTTTG 60.000 43.478 15.01 5.86 0.00 2.77
408 409 4.420168 CAAAACGTTTCAGAAGCCTTTGA 58.580 39.130 15.01 0.00 0.00 2.69
409 410 4.918810 AAACGTTTCAGAAGCCTTTGAT 57.081 36.364 7.96 0.00 0.00 2.57
410 411 3.904136 ACGTTTCAGAAGCCTTTGATG 57.096 42.857 0.00 0.00 0.00 3.07
411 412 3.214328 ACGTTTCAGAAGCCTTTGATGT 58.786 40.909 0.00 0.00 0.00 3.06
412 413 3.632145 ACGTTTCAGAAGCCTTTGATGTT 59.368 39.130 0.00 0.00 0.00 2.71
413 414 4.222114 CGTTTCAGAAGCCTTTGATGTTC 58.778 43.478 0.00 0.00 0.00 3.18
414 415 4.550422 GTTTCAGAAGCCTTTGATGTTCC 58.450 43.478 0.00 0.00 0.00 3.62
415 416 3.507162 TCAGAAGCCTTTGATGTTCCA 57.493 42.857 0.00 0.00 0.00 3.53
416 417 3.415212 TCAGAAGCCTTTGATGTTCCAG 58.585 45.455 0.00 0.00 0.00 3.86
417 418 3.152341 CAGAAGCCTTTGATGTTCCAGT 58.848 45.455 0.00 0.00 0.00 4.00
418 419 4.041567 TCAGAAGCCTTTGATGTTCCAGTA 59.958 41.667 0.00 0.00 0.00 2.74
419 420 4.761739 CAGAAGCCTTTGATGTTCCAGTAA 59.238 41.667 0.00 0.00 0.00 2.24
420 421 5.241506 CAGAAGCCTTTGATGTTCCAGTAAA 59.758 40.000 0.00 0.00 0.00 2.01
421 422 5.833131 AGAAGCCTTTGATGTTCCAGTAAAA 59.167 36.000 0.00 0.00 0.00 1.52
422 423 6.323739 AGAAGCCTTTGATGTTCCAGTAAAAA 59.676 34.615 0.00 0.00 0.00 1.94
446 447 7.617533 AAAATGTAAATTCACGCACTACAAC 57.382 32.000 0.00 0.00 0.00 3.32
447 448 4.735662 TGTAAATTCACGCACTACAACC 57.264 40.909 0.00 0.00 0.00 3.77
448 449 4.127907 TGTAAATTCACGCACTACAACCA 58.872 39.130 0.00 0.00 0.00 3.67
449 450 4.575236 TGTAAATTCACGCACTACAACCAA 59.425 37.500 0.00 0.00 0.00 3.67
450 451 4.640789 AAATTCACGCACTACAACCAAA 57.359 36.364 0.00 0.00 0.00 3.28
451 452 3.896648 ATTCACGCACTACAACCAAAG 57.103 42.857 0.00 0.00 0.00 2.77
456 457 3.064820 CACGCACTACAACCAAAGTTTCT 59.935 43.478 0.00 0.00 32.45 2.52
457 458 3.064820 ACGCACTACAACCAAAGTTTCTG 59.935 43.478 0.00 0.00 32.45 3.02
537 538 4.906437 CGCTCTTAACTTTTGCTCACTTTC 59.094 41.667 0.00 0.00 0.00 2.62
584 593 4.281435 TCAGAACAGGTTACAACGGATGTA 59.719 41.667 0.00 0.00 43.63 2.29
600 609 2.171725 GTAGCCGTCGGGTCAATGC 61.172 63.158 21.20 0.00 34.28 3.56
601 610 3.379865 TAGCCGTCGGGTCAATGCC 62.380 63.158 21.20 0.00 34.28 4.40
602 611 4.778143 GCCGTCGGGTCAATGCCT 62.778 66.667 14.38 0.00 34.97 4.75
603 612 2.046314 CCGTCGGGTCAATGCCTT 60.046 61.111 2.34 0.00 0.00 4.35
604 613 1.219664 CCGTCGGGTCAATGCCTTA 59.780 57.895 2.34 0.00 0.00 2.69
605 614 0.810031 CCGTCGGGTCAATGCCTTAG 60.810 60.000 2.34 0.00 0.00 2.18
606 615 0.174845 CGTCGGGTCAATGCCTTAGA 59.825 55.000 0.00 0.00 0.00 2.10
607 616 1.653151 GTCGGGTCAATGCCTTAGAC 58.347 55.000 0.00 0.00 0.00 2.59
618 627 8.411318 GTCAATGCCTTAGACCATTAATTTTG 57.589 34.615 0.00 0.00 30.96 2.44
619 628 8.250332 GTCAATGCCTTAGACCATTAATTTTGA 58.750 33.333 0.00 0.00 30.96 2.69
620 629 8.250332 TCAATGCCTTAGACCATTAATTTTGAC 58.750 33.333 0.00 0.00 30.96 3.18
621 630 6.189677 TGCCTTAGACCATTAATTTTGACG 57.810 37.500 0.00 0.00 0.00 4.35
622 631 5.941058 TGCCTTAGACCATTAATTTTGACGA 59.059 36.000 0.00 0.00 0.00 4.20
623 632 6.093495 TGCCTTAGACCATTAATTTTGACGAG 59.907 38.462 0.00 0.00 0.00 4.18
624 633 6.487103 CCTTAGACCATTAATTTTGACGAGC 58.513 40.000 0.00 0.00 0.00 5.03
625 634 4.600012 AGACCATTAATTTTGACGAGCG 57.400 40.909 0.00 0.00 0.00 5.03
626 635 3.374058 AGACCATTAATTTTGACGAGCGG 59.626 43.478 0.00 0.00 0.00 5.52
627 636 2.422127 ACCATTAATTTTGACGAGCGGG 59.578 45.455 0.00 0.00 0.00 6.13
628 637 2.223479 CCATTAATTTTGACGAGCGGGG 60.223 50.000 0.00 0.00 0.00 5.73
629 638 0.806241 TTAATTTTGACGAGCGGGGC 59.194 50.000 0.00 0.00 0.00 5.80
630 639 1.027792 TAATTTTGACGAGCGGGGCC 61.028 55.000 0.00 0.00 0.00 5.80
631 640 3.561120 ATTTTGACGAGCGGGGCCA 62.561 57.895 4.39 0.00 0.00 5.36
632 641 2.837031 ATTTTGACGAGCGGGGCCAT 62.837 55.000 4.39 0.00 0.00 4.40
633 642 4.776322 TTGACGAGCGGGGCCATG 62.776 66.667 4.39 0.00 0.00 3.66
635 644 3.845259 GACGAGCGGGGCCATGTA 61.845 66.667 4.39 0.00 0.00 2.29
636 645 3.792053 GACGAGCGGGGCCATGTAG 62.792 68.421 4.39 0.00 0.00 2.74
637 646 4.609018 CGAGCGGGGCCATGTAGG 62.609 72.222 4.39 0.00 41.84 3.18
638 647 4.256180 GAGCGGGGCCATGTAGGG 62.256 72.222 4.39 0.00 38.09 3.53
640 649 4.564110 GCGGGGCCATGTAGGGTC 62.564 72.222 4.39 0.00 38.09 4.46
641 650 4.235762 CGGGGCCATGTAGGGTCG 62.236 72.222 4.39 0.00 38.09 4.79
642 651 2.766651 GGGGCCATGTAGGGTCGA 60.767 66.667 4.39 0.00 38.09 4.20
643 652 2.808206 GGGGCCATGTAGGGTCGAG 61.808 68.421 4.39 0.00 38.09 4.04
644 653 2.064581 GGGCCATGTAGGGTCGAGT 61.065 63.158 4.39 0.00 38.09 4.18
645 654 1.442148 GGCCATGTAGGGTCGAGTC 59.558 63.158 0.00 0.00 38.09 3.36
646 655 1.442148 GCCATGTAGGGTCGAGTCC 59.558 63.158 0.00 0.00 38.09 3.85
647 656 1.327690 GCCATGTAGGGTCGAGTCCA 61.328 60.000 7.39 0.00 38.09 4.02
679 739 0.768221 AACTCTGAGAGTGGGGCCAA 60.768 55.000 16.95 0.00 42.59 4.52
787 848 2.506438 GGTCGTGGAGTAGCACGC 60.506 66.667 0.00 0.00 43.62 5.34
899 1011 1.001406 CCTACCGCATCATCTTCCTCC 59.999 57.143 0.00 0.00 0.00 4.30
993 1107 0.911769 TCACCTTCATCGCCTCCATT 59.088 50.000 0.00 0.00 0.00 3.16
1057 1171 1.480137 GAGATGTAGTGGAGCTGCAGT 59.520 52.381 20.10 20.10 42.87 4.40
1447 1583 7.255491 TGCAAAAATGCTAGATAGATCTGTG 57.745 36.000 5.18 0.00 37.76 3.66
1736 1878 3.243468 TGTGTGTGCATGACAATGGAAAG 60.243 43.478 0.00 0.00 35.71 2.62
1739 1881 3.004629 GTGTGCATGACAATGGAAAGTGA 59.995 43.478 0.00 0.00 35.71 3.41
2088 2253 0.868406 GACAACTTCGTGCCCTTCAG 59.132 55.000 0.00 0.00 0.00 3.02
2138 2303 5.279556 GCCAAGGGAGATGATTACTACTACC 60.280 48.000 0.00 0.00 33.87 3.18
2146 2311 4.665833 TGATTACTACTACCAGCGCAAT 57.334 40.909 11.47 0.00 0.00 3.56
2183 2348 1.488705 CCCCTACTGCACCACCAAGA 61.489 60.000 0.00 0.00 0.00 3.02
2225 2390 3.784701 TCGTTCACCTTCTAGCTCATC 57.215 47.619 0.00 0.00 0.00 2.92
2350 2558 9.268255 GTGTTTTAATTACTTTTGGTTGTTTGC 57.732 29.630 0.00 0.00 0.00 3.68
2439 2655 4.637534 GCATGTGGCTATCTATATTGGGTG 59.362 45.833 0.00 0.00 40.25 4.61
2920 3159 2.703007 CCAAATGAGCTCCTAGGCTAGT 59.297 50.000 19.68 1.29 43.20 2.57
3177 3440 9.654417 CTTTGAAATAAAGCTTTGGTGATTTTG 57.346 29.630 22.02 7.60 0.00 2.44
3180 3443 8.825745 TGAAATAAAGCTTTGGTGATTTTGTTC 58.174 29.630 22.02 8.06 0.00 3.18
3215 3484 7.764695 ATTTTTCAAAAACAGAAGGTAACCG 57.235 32.000 0.00 0.00 37.17 4.44
3228 3497 1.341383 GGTAACCGTACCTCCTCTCCA 60.341 57.143 0.00 0.00 45.72 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.533755 CCTAAGCTTGGGGATGCTCG 60.534 60.000 20.71 0.00 38.75 5.03
1 2 0.821301 GCCTAAGCTTGGGGATGCTC 60.821 60.000 28.06 8.42 38.75 4.26
2 3 1.228510 GCCTAAGCTTGGGGATGCT 59.771 57.895 28.06 0.00 41.82 3.79
19 20 2.092699 AGGAATAAGGAGTGGCAAGAGC 60.093 50.000 0.00 0.00 41.10 4.09
20 21 3.922171 AGGAATAAGGAGTGGCAAGAG 57.078 47.619 0.00 0.00 0.00 2.85
21 22 3.587061 TGAAGGAATAAGGAGTGGCAAGA 59.413 43.478 0.00 0.00 0.00 3.02
22 23 3.955471 TGAAGGAATAAGGAGTGGCAAG 58.045 45.455 0.00 0.00 0.00 4.01
23 24 4.526970 GATGAAGGAATAAGGAGTGGCAA 58.473 43.478 0.00 0.00 0.00 4.52
24 25 3.117888 GGATGAAGGAATAAGGAGTGGCA 60.118 47.826 0.00 0.00 0.00 4.92
25 26 3.117888 TGGATGAAGGAATAAGGAGTGGC 60.118 47.826 0.00 0.00 0.00 5.01
26 27 4.778213 TGGATGAAGGAATAAGGAGTGG 57.222 45.455 0.00 0.00 0.00 4.00
27 28 4.993584 CGATGGATGAAGGAATAAGGAGTG 59.006 45.833 0.00 0.00 0.00 3.51
28 29 4.656112 ACGATGGATGAAGGAATAAGGAGT 59.344 41.667 0.00 0.00 0.00 3.85
29 30 4.993584 CACGATGGATGAAGGAATAAGGAG 59.006 45.833 0.00 0.00 0.00 3.69
30 31 4.653801 TCACGATGGATGAAGGAATAAGGA 59.346 41.667 0.00 0.00 0.00 3.36
31 32 4.960938 TCACGATGGATGAAGGAATAAGG 58.039 43.478 0.00 0.00 0.00 2.69
32 33 4.450419 GCTCACGATGGATGAAGGAATAAG 59.550 45.833 0.00 0.00 0.00 1.73
33 34 4.101585 AGCTCACGATGGATGAAGGAATAA 59.898 41.667 0.00 0.00 0.00 1.40
34 35 3.643320 AGCTCACGATGGATGAAGGAATA 59.357 43.478 0.00 0.00 0.00 1.75
35 36 2.437281 AGCTCACGATGGATGAAGGAAT 59.563 45.455 0.00 0.00 0.00 3.01
36 37 1.833630 AGCTCACGATGGATGAAGGAA 59.166 47.619 0.00 0.00 0.00 3.36
37 38 1.410517 GAGCTCACGATGGATGAAGGA 59.589 52.381 9.40 0.00 0.00 3.36
38 39 1.137675 TGAGCTCACGATGGATGAAGG 59.862 52.381 13.74 0.00 0.00 3.46
39 40 2.200067 GTGAGCTCACGATGGATGAAG 58.800 52.381 29.84 0.00 37.10 3.02
40 41 2.299993 GTGAGCTCACGATGGATGAA 57.700 50.000 29.84 0.00 37.10 2.57
50 51 2.297701 TCAAGTTTTGGGTGAGCTCAC 58.702 47.619 34.25 34.25 45.72 3.51
51 52 2.727123 TCAAGTTTTGGGTGAGCTCA 57.273 45.000 13.74 13.74 0.00 4.26
52 53 4.112634 GTTTTCAAGTTTTGGGTGAGCTC 58.887 43.478 6.82 6.82 0.00 4.09
53 54 3.769300 AGTTTTCAAGTTTTGGGTGAGCT 59.231 39.130 0.00 0.00 0.00 4.09
54 55 4.123497 AGTTTTCAAGTTTTGGGTGAGC 57.877 40.909 0.00 0.00 0.00 4.26
55 56 5.719173 TGAAGTTTTCAAGTTTTGGGTGAG 58.281 37.500 0.00 0.00 36.59 3.51
56 57 5.730296 TGAAGTTTTCAAGTTTTGGGTGA 57.270 34.783 0.00 0.00 36.59 4.02
68 69 9.698309 TTTAGTTTTGTGTGATTGAAGTTTTCA 57.302 25.926 0.00 0.00 38.04 2.69
69 70 9.952341 GTTTAGTTTTGTGTGATTGAAGTTTTC 57.048 29.630 0.00 0.00 0.00 2.29
70 71 9.482627 TGTTTAGTTTTGTGTGATTGAAGTTTT 57.517 25.926 0.00 0.00 0.00 2.43
71 72 9.482627 TTGTTTAGTTTTGTGTGATTGAAGTTT 57.517 25.926 0.00 0.00 0.00 2.66
72 73 9.482627 TTTGTTTAGTTTTGTGTGATTGAAGTT 57.517 25.926 0.00 0.00 0.00 2.66
73 74 9.482627 TTTTGTTTAGTTTTGTGTGATTGAAGT 57.517 25.926 0.00 0.00 0.00 3.01
76 77 9.092876 GGATTTTGTTTAGTTTTGTGTGATTGA 57.907 29.630 0.00 0.00 0.00 2.57
77 78 9.097257 AGGATTTTGTTTAGTTTTGTGTGATTG 57.903 29.630 0.00 0.00 0.00 2.67
78 79 9.313118 GAGGATTTTGTTTAGTTTTGTGTGATT 57.687 29.630 0.00 0.00 0.00 2.57
79 80 7.647715 CGAGGATTTTGTTTAGTTTTGTGTGAT 59.352 33.333 0.00 0.00 0.00 3.06
80 81 6.970043 CGAGGATTTTGTTTAGTTTTGTGTGA 59.030 34.615 0.00 0.00 0.00 3.58
81 82 6.750039 ACGAGGATTTTGTTTAGTTTTGTGTG 59.250 34.615 0.00 0.00 0.00 3.82
82 83 6.750039 CACGAGGATTTTGTTTAGTTTTGTGT 59.250 34.615 0.00 0.00 0.00 3.72
83 84 6.970043 TCACGAGGATTTTGTTTAGTTTTGTG 59.030 34.615 0.00 0.00 0.00 3.33
84 85 7.066525 TCTCACGAGGATTTTGTTTAGTTTTGT 59.933 33.333 0.00 0.00 0.00 2.83
85 86 7.414436 TCTCACGAGGATTTTGTTTAGTTTTG 58.586 34.615 0.00 0.00 0.00 2.44
86 87 7.562454 TCTCACGAGGATTTTGTTTAGTTTT 57.438 32.000 0.00 0.00 0.00 2.43
87 88 7.094762 GGATCTCACGAGGATTTTGTTTAGTTT 60.095 37.037 0.00 0.00 0.00 2.66
88 89 6.371825 GGATCTCACGAGGATTTTGTTTAGTT 59.628 38.462 0.00 0.00 0.00 2.24
89 90 5.875359 GGATCTCACGAGGATTTTGTTTAGT 59.125 40.000 0.00 0.00 0.00 2.24
90 91 5.005779 CGGATCTCACGAGGATTTTGTTTAG 59.994 44.000 0.00 0.00 0.00 1.85
91 92 4.868171 CGGATCTCACGAGGATTTTGTTTA 59.132 41.667 0.00 0.00 0.00 2.01
92 93 3.684788 CGGATCTCACGAGGATTTTGTTT 59.315 43.478 0.00 0.00 0.00 2.83
93 94 3.262420 CGGATCTCACGAGGATTTTGTT 58.738 45.455 0.00 0.00 0.00 2.83
94 95 2.233922 ACGGATCTCACGAGGATTTTGT 59.766 45.455 0.00 0.00 34.93 2.83
95 96 2.893637 ACGGATCTCACGAGGATTTTG 58.106 47.619 0.00 0.00 34.93 2.44
96 97 3.611766 AACGGATCTCACGAGGATTTT 57.388 42.857 0.00 0.00 34.93 1.82
97 98 3.700038 ACTAACGGATCTCACGAGGATTT 59.300 43.478 0.00 0.00 34.93 2.17
98 99 3.288964 ACTAACGGATCTCACGAGGATT 58.711 45.455 0.00 0.00 34.93 3.01
99 100 2.933573 ACTAACGGATCTCACGAGGAT 58.066 47.619 0.00 0.00 34.93 3.24
100 101 2.414994 ACTAACGGATCTCACGAGGA 57.585 50.000 0.00 0.00 34.93 3.71
101 102 5.936686 TTATACTAACGGATCTCACGAGG 57.063 43.478 0.00 0.00 34.93 4.63
102 103 7.130303 TCATTATACTAACGGATCTCACGAG 57.870 40.000 0.00 0.00 34.93 4.18
103 104 7.500720 TTCATTATACTAACGGATCTCACGA 57.499 36.000 0.00 0.00 34.93 4.35
104 105 6.305877 GCTTCATTATACTAACGGATCTCACG 59.694 42.308 0.00 0.00 37.36 4.35
105 106 7.145985 TGCTTCATTATACTAACGGATCTCAC 58.854 38.462 0.00 0.00 0.00 3.51
106 107 7.284919 TGCTTCATTATACTAACGGATCTCA 57.715 36.000 0.00 0.00 0.00 3.27
107 108 8.589335 TTTGCTTCATTATACTAACGGATCTC 57.411 34.615 0.00 0.00 0.00 2.75
108 109 9.561069 AATTTGCTTCATTATACTAACGGATCT 57.439 29.630 0.00 0.00 0.00 2.75
134 135 9.169592 GGGTTTGCAATAGTACTTAAAGTGATA 57.830 33.333 0.00 0.00 0.00 2.15
135 136 7.668052 TGGGTTTGCAATAGTACTTAAAGTGAT 59.332 33.333 0.00 0.00 0.00 3.06
136 137 6.999272 TGGGTTTGCAATAGTACTTAAAGTGA 59.001 34.615 0.00 0.00 0.00 3.41
137 138 7.209471 TGGGTTTGCAATAGTACTTAAAGTG 57.791 36.000 0.00 0.00 0.00 3.16
138 139 8.417273 AATGGGTTTGCAATAGTACTTAAAGT 57.583 30.769 0.00 0.00 0.00 2.66
139 140 8.519526 TGAATGGGTTTGCAATAGTACTTAAAG 58.480 33.333 0.00 0.00 0.00 1.85
140 141 8.301002 GTGAATGGGTTTGCAATAGTACTTAAA 58.699 33.333 0.00 0.00 0.00 1.52
141 142 7.448777 TGTGAATGGGTTTGCAATAGTACTTAA 59.551 33.333 0.00 0.00 0.00 1.85
142 143 6.943146 TGTGAATGGGTTTGCAATAGTACTTA 59.057 34.615 0.00 0.00 0.00 2.24
143 144 5.772672 TGTGAATGGGTTTGCAATAGTACTT 59.227 36.000 0.00 0.00 0.00 2.24
144 145 5.321102 TGTGAATGGGTTTGCAATAGTACT 58.679 37.500 0.00 0.00 0.00 2.73
145 146 5.637006 TGTGAATGGGTTTGCAATAGTAC 57.363 39.130 0.00 0.00 0.00 2.73
146 147 6.849085 AATGTGAATGGGTTTGCAATAGTA 57.151 33.333 0.00 0.00 0.00 1.82
147 148 5.743636 AATGTGAATGGGTTTGCAATAGT 57.256 34.783 0.00 0.00 0.00 2.12
148 149 8.721019 ATAAAATGTGAATGGGTTTGCAATAG 57.279 30.769 0.00 0.00 0.00 1.73
149 150 9.512588 AAATAAAATGTGAATGGGTTTGCAATA 57.487 25.926 0.00 0.00 0.00 1.90
150 151 7.999450 AATAAAATGTGAATGGGTTTGCAAT 57.001 28.000 0.00 0.00 0.00 3.56
151 152 7.814264 AAATAAAATGTGAATGGGTTTGCAA 57.186 28.000 0.00 0.00 0.00 4.08
152 153 7.814264 AAAATAAAATGTGAATGGGTTTGCA 57.186 28.000 0.00 0.00 0.00 4.08
153 154 7.114670 GCAAAAATAAAATGTGAATGGGTTTGC 59.885 33.333 0.00 0.00 39.14 3.68
154 155 8.133627 TGCAAAAATAAAATGTGAATGGGTTTG 58.866 29.630 0.00 0.00 0.00 2.93
155 156 8.230472 TGCAAAAATAAAATGTGAATGGGTTT 57.770 26.923 0.00 0.00 0.00 3.27
156 157 7.814264 TGCAAAAATAAAATGTGAATGGGTT 57.186 28.000 0.00 0.00 0.00 4.11
157 158 7.999450 ATGCAAAAATAAAATGTGAATGGGT 57.001 28.000 0.00 0.00 0.00 4.51
158 159 8.298140 ACAATGCAAAAATAAAATGTGAATGGG 58.702 29.630 0.00 0.00 0.00 4.00
162 163 9.270640 AGCTACAATGCAAAAATAAAATGTGAA 57.729 25.926 0.00 0.00 34.99 3.18
163 164 8.830201 AGCTACAATGCAAAAATAAAATGTGA 57.170 26.923 0.00 0.00 34.99 3.58
164 165 9.956797 GTAGCTACAATGCAAAAATAAAATGTG 57.043 29.630 19.15 0.00 34.99 3.21
165 166 9.927668 AGTAGCTACAATGCAAAAATAAAATGT 57.072 25.926 25.28 0.00 34.99 2.71
167 168 9.927668 ACAGTAGCTACAATGCAAAAATAAAAT 57.072 25.926 25.28 0.00 34.99 1.82
172 173 9.927668 AAAATACAGTAGCTACAATGCAAAAAT 57.072 25.926 25.28 0.00 34.99 1.82
175 176 9.834628 GTTAAAATACAGTAGCTACAATGCAAA 57.165 29.630 25.28 7.41 34.99 3.68
176 177 9.226606 AGTTAAAATACAGTAGCTACAATGCAA 57.773 29.630 25.28 8.58 34.99 4.08
177 178 8.786826 AGTTAAAATACAGTAGCTACAATGCA 57.213 30.769 25.28 7.52 34.99 3.96
178 179 9.704098 GAAGTTAAAATACAGTAGCTACAATGC 57.296 33.333 25.28 0.00 0.00 3.56
186 187 8.766151 GCCATAGAGAAGTTAAAATACAGTAGC 58.234 37.037 0.00 0.00 0.00 3.58
195 196 9.609346 GTGGTATAAGCCATAGAGAAGTTAAAA 57.391 33.333 0.00 0.00 41.08 1.52
196 197 8.989131 AGTGGTATAAGCCATAGAGAAGTTAAA 58.011 33.333 0.00 0.00 41.08 1.52
197 198 8.421784 CAGTGGTATAAGCCATAGAGAAGTTAA 58.578 37.037 0.00 0.00 41.08 2.01
198 199 7.783119 TCAGTGGTATAAGCCATAGAGAAGTTA 59.217 37.037 0.00 0.00 41.08 2.24
199 200 6.611642 TCAGTGGTATAAGCCATAGAGAAGTT 59.388 38.462 0.00 0.00 41.08 2.66
200 201 6.136857 TCAGTGGTATAAGCCATAGAGAAGT 58.863 40.000 0.00 0.00 41.08 3.01
201 202 6.656632 TCAGTGGTATAAGCCATAGAGAAG 57.343 41.667 0.00 0.00 41.08 2.85
202 203 7.728532 TGTATCAGTGGTATAAGCCATAGAGAA 59.271 37.037 0.00 0.00 41.08 2.87
203 204 7.238710 TGTATCAGTGGTATAAGCCATAGAGA 58.761 38.462 0.00 0.00 41.08 3.10
204 205 7.468141 TGTATCAGTGGTATAAGCCATAGAG 57.532 40.000 0.00 0.00 41.08 2.43
205 206 7.849322 TTGTATCAGTGGTATAAGCCATAGA 57.151 36.000 0.00 0.00 41.08 1.98
206 207 7.489435 CGATTGTATCAGTGGTATAAGCCATAG 59.511 40.741 2.98 0.00 41.08 2.23
207 208 7.320399 CGATTGTATCAGTGGTATAAGCCATA 58.680 38.462 2.98 0.00 41.08 2.74
208 209 6.166279 CGATTGTATCAGTGGTATAAGCCAT 58.834 40.000 2.98 0.00 41.08 4.40
209 210 5.510690 CCGATTGTATCAGTGGTATAAGCCA 60.511 44.000 2.98 0.00 35.93 4.75
210 211 4.929808 CCGATTGTATCAGTGGTATAAGCC 59.070 45.833 2.98 0.00 0.00 4.35
211 212 5.539048 ACCGATTGTATCAGTGGTATAAGC 58.461 41.667 0.00 0.00 0.00 3.09
212 213 7.883217 ACTACCGATTGTATCAGTGGTATAAG 58.117 38.462 0.00 0.00 30.84 1.73
213 214 7.828508 ACTACCGATTGTATCAGTGGTATAA 57.171 36.000 0.00 0.00 30.84 0.98
214 215 7.828508 AACTACCGATTGTATCAGTGGTATA 57.171 36.000 0.00 0.00 31.30 1.47
215 216 6.726490 AACTACCGATTGTATCAGTGGTAT 57.274 37.500 0.00 0.00 31.30 2.73
216 217 6.153170 TGAAACTACCGATTGTATCAGTGGTA 59.847 38.462 0.00 0.00 31.30 3.25
217 218 5.046878 TGAAACTACCGATTGTATCAGTGGT 60.047 40.000 0.00 0.00 33.52 4.16
218 219 5.416083 TGAAACTACCGATTGTATCAGTGG 58.584 41.667 0.00 0.00 0.00 4.00
219 220 6.756542 TGATGAAACTACCGATTGTATCAGTG 59.243 38.462 0.00 0.00 0.00 3.66
220 221 6.873997 TGATGAAACTACCGATTGTATCAGT 58.126 36.000 0.00 0.00 0.00 3.41
221 222 7.770801 TTGATGAAACTACCGATTGTATCAG 57.229 36.000 0.00 0.00 0.00 2.90
222 223 8.447833 GTTTTGATGAAACTACCGATTGTATCA 58.552 33.333 0.00 0.00 43.44 2.15
223 224 8.447833 TGTTTTGATGAAACTACCGATTGTATC 58.552 33.333 3.66 0.00 46.25 2.24
224 225 8.330466 TGTTTTGATGAAACTACCGATTGTAT 57.670 30.769 3.66 0.00 46.25 2.29
225 226 7.731882 TGTTTTGATGAAACTACCGATTGTA 57.268 32.000 3.66 0.00 46.25 2.41
226 227 6.627395 TGTTTTGATGAAACTACCGATTGT 57.373 33.333 3.66 0.00 46.25 2.71
227 228 6.088085 GCTTGTTTTGATGAAACTACCGATTG 59.912 38.462 3.66 0.00 46.25 2.67
228 229 6.149633 GCTTGTTTTGATGAAACTACCGATT 58.850 36.000 3.66 0.00 46.25 3.34
229 230 5.240623 TGCTTGTTTTGATGAAACTACCGAT 59.759 36.000 3.66 0.00 46.25 4.18
230 231 4.576873 TGCTTGTTTTGATGAAACTACCGA 59.423 37.500 3.66 0.00 46.25 4.69
231 232 4.854399 TGCTTGTTTTGATGAAACTACCG 58.146 39.130 3.66 0.00 46.25 4.02
232 233 7.064016 TGTTTTGCTTGTTTTGATGAAACTACC 59.936 33.333 3.66 0.00 46.25 3.18
233 234 7.958674 TGTTTTGCTTGTTTTGATGAAACTAC 58.041 30.769 3.66 0.00 46.25 2.73
234 235 8.539770 TTGTTTTGCTTGTTTTGATGAAACTA 57.460 26.923 3.66 0.00 46.25 2.24
235 236 7.432350 TTGTTTTGCTTGTTTTGATGAAACT 57.568 28.000 3.66 0.00 46.25 2.66
236 237 7.253387 GCATTGTTTTGCTTGTTTTGATGAAAC 60.253 33.333 0.00 0.00 42.14 2.78
237 238 6.746364 GCATTGTTTTGCTTGTTTTGATGAAA 59.254 30.769 0.00 0.00 39.57 2.69
238 239 6.128090 TGCATTGTTTTGCTTGTTTTGATGAA 60.128 30.769 0.00 0.00 43.18 2.57
239 240 5.353400 TGCATTGTTTTGCTTGTTTTGATGA 59.647 32.000 0.00 0.00 43.18 2.92
240 241 5.570344 TGCATTGTTTTGCTTGTTTTGATG 58.430 33.333 0.00 0.00 43.18 3.07
241 242 5.814764 TGCATTGTTTTGCTTGTTTTGAT 57.185 30.435 0.00 0.00 43.18 2.57
242 243 5.353400 TGATGCATTGTTTTGCTTGTTTTGA 59.647 32.000 0.00 0.00 43.18 2.69
243 244 5.570344 TGATGCATTGTTTTGCTTGTTTTG 58.430 33.333 0.00 0.00 43.18 2.44
244 245 5.814764 TGATGCATTGTTTTGCTTGTTTT 57.185 30.435 0.00 0.00 43.18 2.43
245 246 5.814764 TTGATGCATTGTTTTGCTTGTTT 57.185 30.435 0.00 0.00 43.18 2.83
246 247 5.814764 TTTGATGCATTGTTTTGCTTGTT 57.185 30.435 0.00 0.00 43.18 2.83
247 248 5.814764 TTTTGATGCATTGTTTTGCTTGT 57.185 30.435 0.00 0.00 43.18 3.16
248 249 6.028368 TGTTTTTGATGCATTGTTTTGCTTG 58.972 32.000 0.00 0.00 43.18 4.01
249 250 6.093771 TCTGTTTTTGATGCATTGTTTTGCTT 59.906 30.769 0.00 0.00 43.18 3.91
250 251 5.585445 TCTGTTTTTGATGCATTGTTTTGCT 59.415 32.000 0.00 0.00 43.18 3.91
251 252 5.808403 TCTGTTTTTGATGCATTGTTTTGC 58.192 33.333 0.00 0.00 43.07 3.68
252 253 8.844441 AATTCTGTTTTTGATGCATTGTTTTG 57.156 26.923 0.00 0.00 0.00 2.44
253 254 9.291664 CAAATTCTGTTTTTGATGCATTGTTTT 57.708 25.926 0.00 0.00 36.40 2.43
254 255 8.460428 ACAAATTCTGTTTTTGATGCATTGTTT 58.540 25.926 0.00 0.00 37.48 2.83
255 256 7.987649 ACAAATTCTGTTTTTGATGCATTGTT 58.012 26.923 0.00 0.00 37.48 2.83
256 257 7.496591 AGACAAATTCTGTTTTTGATGCATTGT 59.503 29.630 0.00 0.00 38.84 2.71
257 258 7.857569 AGACAAATTCTGTTTTTGATGCATTG 58.142 30.769 0.00 0.00 38.84 2.82
258 259 8.441312 AAGACAAATTCTGTTTTTGATGCATT 57.559 26.923 0.00 0.00 38.84 3.56
259 260 9.545105 TTAAGACAAATTCTGTTTTTGATGCAT 57.455 25.926 0.00 0.00 38.84 3.96
260 261 8.939201 TTAAGACAAATTCTGTTTTTGATGCA 57.061 26.923 10.47 0.00 38.84 3.96
261 262 9.636965 GTTTAAGACAAATTCTGTTTTTGATGC 57.363 29.630 10.47 0.00 38.84 3.91
267 268 9.921637 TGTTCTGTTTAAGACAAATTCTGTTTT 57.078 25.926 3.40 3.40 38.84 2.43
268 269 9.573133 CTGTTCTGTTTAAGACAAATTCTGTTT 57.427 29.630 0.00 0.00 38.84 2.83
269 270 8.739972 ACTGTTCTGTTTAAGACAAATTCTGTT 58.260 29.630 0.00 0.00 38.84 3.16
270 271 8.281212 ACTGTTCTGTTTAAGACAAATTCTGT 57.719 30.769 0.00 0.00 42.61 3.41
271 272 8.616076 AGACTGTTCTGTTTAAGACAAATTCTG 58.384 33.333 0.00 0.00 37.93 3.02
272 273 8.616076 CAGACTGTTCTGTTTAAGACAAATTCT 58.384 33.333 0.00 0.00 43.95 2.40
273 274 8.773762 CAGACTGTTCTGTTTAAGACAAATTC 57.226 34.615 0.00 0.00 43.95 2.17
288 289 5.221521 TGTTCAGATTGCTACAGACTGTTCT 60.222 40.000 14.50 7.17 0.00 3.01
289 290 4.991056 TGTTCAGATTGCTACAGACTGTTC 59.009 41.667 14.50 4.73 0.00 3.18
290 291 4.960938 TGTTCAGATTGCTACAGACTGTT 58.039 39.130 14.50 0.00 0.00 3.16
291 292 4.607293 TGTTCAGATTGCTACAGACTGT 57.393 40.909 13.68 13.68 0.00 3.55
292 293 6.492007 AAATGTTCAGATTGCTACAGACTG 57.508 37.500 0.00 0.00 0.00 3.51
293 294 6.595716 GGTAAATGTTCAGATTGCTACAGACT 59.404 38.462 0.00 0.00 0.00 3.24
294 295 6.371548 TGGTAAATGTTCAGATTGCTACAGAC 59.628 38.462 0.00 0.00 0.00 3.51
295 296 6.472016 TGGTAAATGTTCAGATTGCTACAGA 58.528 36.000 0.00 0.00 0.00 3.41
296 297 6.741992 TGGTAAATGTTCAGATTGCTACAG 57.258 37.500 0.00 0.00 0.00 2.74
297 298 8.046708 AGTATGGTAAATGTTCAGATTGCTACA 58.953 33.333 0.00 0.00 0.00 2.74
298 299 8.438676 AGTATGGTAAATGTTCAGATTGCTAC 57.561 34.615 0.00 0.00 0.00 3.58
300 301 7.944729 AAGTATGGTAAATGTTCAGATTGCT 57.055 32.000 0.00 0.00 0.00 3.91
301 302 9.669353 CATAAGTATGGTAAATGTTCAGATTGC 57.331 33.333 0.00 0.00 0.00 3.56
351 352 9.030452 TGCTATACCAATTGTTTATTTTGTCCT 57.970 29.630 4.43 0.00 0.00 3.85
352 353 9.646427 TTGCTATACCAATTGTTTATTTTGTCC 57.354 29.630 4.43 0.00 0.00 4.02
361 362 9.130661 TGCATAGTATTGCTATACCAATTGTTT 57.869 29.630 13.67 0.00 43.18 2.83
362 363 8.690203 TGCATAGTATTGCTATACCAATTGTT 57.310 30.769 13.67 0.00 43.18 2.83
363 364 8.690203 TTGCATAGTATTGCTATACCAATTGT 57.310 30.769 13.67 0.00 43.18 2.71
364 365 9.964303 TTTTGCATAGTATTGCTATACCAATTG 57.036 29.630 13.67 0.00 43.18 2.32
365 366 9.965824 GTTTTGCATAGTATTGCTATACCAATT 57.034 29.630 13.67 0.00 43.18 2.32
366 367 8.289618 CGTTTTGCATAGTATTGCTATACCAAT 58.710 33.333 13.67 6.36 43.18 3.16
367 368 7.281324 ACGTTTTGCATAGTATTGCTATACCAA 59.719 33.333 13.67 8.59 43.18 3.67
368 369 6.764085 ACGTTTTGCATAGTATTGCTATACCA 59.236 34.615 13.67 1.99 43.18 3.25
369 370 7.186021 ACGTTTTGCATAGTATTGCTATACC 57.814 36.000 13.67 0.99 43.18 2.73
370 371 9.155053 GAAACGTTTTGCATAGTATTGCTATAC 57.845 33.333 15.89 9.93 43.18 1.47
371 372 8.884726 TGAAACGTTTTGCATAGTATTGCTATA 58.115 29.630 15.89 0.00 43.18 1.31
372 373 7.757526 TGAAACGTTTTGCATAGTATTGCTAT 58.242 30.769 15.89 0.00 43.18 2.97
373 374 7.118535 TCTGAAACGTTTTGCATAGTATTGCTA 59.881 33.333 15.89 0.00 43.18 3.49
374 375 6.007936 TGAAACGTTTTGCATAGTATTGCT 57.992 33.333 15.89 0.00 43.18 3.91
375 376 6.083630 TCTGAAACGTTTTGCATAGTATTGC 58.916 36.000 15.89 0.00 43.07 3.56
376 377 7.201266 GCTTCTGAAACGTTTTGCATAGTATTG 60.201 37.037 15.89 0.00 0.00 1.90
377 378 6.801862 GCTTCTGAAACGTTTTGCATAGTATT 59.198 34.615 15.89 0.00 0.00 1.89
378 379 6.314784 GCTTCTGAAACGTTTTGCATAGTAT 58.685 36.000 15.89 0.00 0.00 2.12
379 380 5.334569 GGCTTCTGAAACGTTTTGCATAGTA 60.335 40.000 15.89 2.96 0.00 1.82
380 381 4.537015 GCTTCTGAAACGTTTTGCATAGT 58.463 39.130 15.89 0.00 0.00 2.12
381 382 3.914364 GGCTTCTGAAACGTTTTGCATAG 59.086 43.478 15.89 10.17 0.00 2.23
382 383 3.568007 AGGCTTCTGAAACGTTTTGCATA 59.432 39.130 15.89 0.00 0.00 3.14
383 384 2.362077 AGGCTTCTGAAACGTTTTGCAT 59.638 40.909 15.89 9.58 0.00 3.96
384 385 1.748493 AGGCTTCTGAAACGTTTTGCA 59.252 42.857 15.89 8.56 0.00 4.08
385 386 2.492019 AGGCTTCTGAAACGTTTTGC 57.508 45.000 15.89 13.54 0.00 3.68
386 387 4.420168 TCAAAGGCTTCTGAAACGTTTTG 58.580 39.130 15.89 11.34 0.00 2.44
387 388 4.712122 TCAAAGGCTTCTGAAACGTTTT 57.288 36.364 15.89 0.00 0.00 2.43
388 389 4.097892 ACATCAAAGGCTTCTGAAACGTTT 59.902 37.500 14.57 14.57 0.00 3.60
389 390 3.632145 ACATCAAAGGCTTCTGAAACGTT 59.368 39.130 0.00 0.00 0.00 3.99
390 391 3.214328 ACATCAAAGGCTTCTGAAACGT 58.786 40.909 0.00 4.03 0.00 3.99
391 392 3.904136 ACATCAAAGGCTTCTGAAACG 57.096 42.857 0.00 3.48 0.00 3.60
392 393 4.037923 TGGAACATCAAAGGCTTCTGAAAC 59.962 41.667 0.00 1.53 0.00 2.78
393 394 4.214310 TGGAACATCAAAGGCTTCTGAAA 58.786 39.130 0.00 0.00 0.00 2.69
394 395 3.822735 CTGGAACATCAAAGGCTTCTGAA 59.177 43.478 0.00 0.00 38.20 3.02
395 396 3.181440 ACTGGAACATCAAAGGCTTCTGA 60.181 43.478 0.00 7.36 38.20 3.27
396 397 3.152341 ACTGGAACATCAAAGGCTTCTG 58.848 45.455 0.00 1.44 38.20 3.02
397 398 3.515602 ACTGGAACATCAAAGGCTTCT 57.484 42.857 0.00 0.00 38.20 2.85
398 399 5.705609 TTTACTGGAACATCAAAGGCTTC 57.294 39.130 0.00 0.00 38.20 3.86
399 400 6.478512 TTTTTACTGGAACATCAAAGGCTT 57.521 33.333 0.00 0.00 38.20 4.35
421 422 7.168469 GGTTGTAGTGCGTGAATTTACATTTTT 59.832 33.333 0.95 0.00 0.00 1.94
422 423 6.639279 GGTTGTAGTGCGTGAATTTACATTTT 59.361 34.615 0.95 0.00 0.00 1.82
423 424 6.146898 GGTTGTAGTGCGTGAATTTACATTT 58.853 36.000 0.95 0.00 0.00 2.32
424 425 5.239744 TGGTTGTAGTGCGTGAATTTACATT 59.760 36.000 0.95 0.00 0.00 2.71
425 426 4.757657 TGGTTGTAGTGCGTGAATTTACAT 59.242 37.500 0.95 0.00 0.00 2.29
426 427 4.127907 TGGTTGTAGTGCGTGAATTTACA 58.872 39.130 0.95 0.00 0.00 2.41
427 428 4.735662 TGGTTGTAGTGCGTGAATTTAC 57.264 40.909 0.00 0.00 0.00 2.01
428 429 5.297278 ACTTTGGTTGTAGTGCGTGAATTTA 59.703 36.000 0.00 0.00 0.00 1.40
429 430 4.097286 ACTTTGGTTGTAGTGCGTGAATTT 59.903 37.500 0.00 0.00 0.00 1.82
430 431 3.630312 ACTTTGGTTGTAGTGCGTGAATT 59.370 39.130 0.00 0.00 0.00 2.17
431 432 3.211045 ACTTTGGTTGTAGTGCGTGAAT 58.789 40.909 0.00 0.00 0.00 2.57
432 433 2.634600 ACTTTGGTTGTAGTGCGTGAA 58.365 42.857 0.00 0.00 0.00 3.18
433 434 2.319136 ACTTTGGTTGTAGTGCGTGA 57.681 45.000 0.00 0.00 0.00 4.35
434 435 3.064820 AGAAACTTTGGTTGTAGTGCGTG 59.935 43.478 0.00 0.00 35.63 5.34
435 436 3.064820 CAGAAACTTTGGTTGTAGTGCGT 59.935 43.478 0.00 0.00 35.63 5.24
436 437 3.064820 ACAGAAACTTTGGTTGTAGTGCG 59.935 43.478 0.00 0.00 35.63 5.34
437 438 4.632538 ACAGAAACTTTGGTTGTAGTGC 57.367 40.909 0.00 0.00 35.63 4.40
438 439 6.310224 CCAAAACAGAAACTTTGGTTGTAGTG 59.690 38.462 5.58 0.00 44.37 2.74
439 440 6.394809 CCAAAACAGAAACTTTGGTTGTAGT 58.605 36.000 5.58 0.00 44.37 2.73
440 441 5.810074 CCCAAAACAGAAACTTTGGTTGTAG 59.190 40.000 11.51 0.00 46.82 2.74
441 442 5.480772 TCCCAAAACAGAAACTTTGGTTGTA 59.519 36.000 11.51 0.00 46.82 2.41
442 443 4.284746 TCCCAAAACAGAAACTTTGGTTGT 59.715 37.500 11.51 0.00 46.82 3.32
443 444 4.826556 TCCCAAAACAGAAACTTTGGTTG 58.173 39.130 11.51 0.00 46.82 3.77
444 445 5.692115 ATCCCAAAACAGAAACTTTGGTT 57.308 34.783 11.51 0.00 46.82 3.67
445 446 5.692115 AATCCCAAAACAGAAACTTTGGT 57.308 34.783 11.51 0.00 46.82 3.67
456 457 6.484977 GGCACAGAAATAAAAATCCCAAAACA 59.515 34.615 0.00 0.00 0.00 2.83
457 458 6.072728 GGGCACAGAAATAAAAATCCCAAAAC 60.073 38.462 0.00 0.00 0.00 2.43
584 593 4.778143 GGCATTGACCCGACGGCT 62.778 66.667 8.86 0.00 0.00 5.52
600 609 6.487103 GCTCGTCAAAATTAATGGTCTAAGG 58.513 40.000 0.00 0.00 0.00 2.69
601 610 6.185399 CGCTCGTCAAAATTAATGGTCTAAG 58.815 40.000 0.00 0.00 0.00 2.18
602 611 5.064198 CCGCTCGTCAAAATTAATGGTCTAA 59.936 40.000 0.00 0.00 0.00 2.10
603 612 4.569162 CCGCTCGTCAAAATTAATGGTCTA 59.431 41.667 0.00 0.00 0.00 2.59
604 613 3.374058 CCGCTCGTCAAAATTAATGGTCT 59.626 43.478 0.00 0.00 0.00 3.85
605 614 3.486875 CCCGCTCGTCAAAATTAATGGTC 60.487 47.826 0.00 0.00 0.00 4.02
606 615 2.422127 CCCGCTCGTCAAAATTAATGGT 59.578 45.455 0.00 0.00 0.00 3.55
607 616 2.223479 CCCCGCTCGTCAAAATTAATGG 60.223 50.000 0.00 0.00 0.00 3.16
608 617 2.794631 GCCCCGCTCGTCAAAATTAATG 60.795 50.000 0.00 0.00 0.00 1.90
609 618 1.404035 GCCCCGCTCGTCAAAATTAAT 59.596 47.619 0.00 0.00 0.00 1.40
610 619 0.806241 GCCCCGCTCGTCAAAATTAA 59.194 50.000 0.00 0.00 0.00 1.40
611 620 1.027792 GGCCCCGCTCGTCAAAATTA 61.028 55.000 0.00 0.00 0.00 1.40
612 621 2.340328 GGCCCCGCTCGTCAAAATT 61.340 57.895 0.00 0.00 0.00 1.82
613 622 2.750237 GGCCCCGCTCGTCAAAAT 60.750 61.111 0.00 0.00 0.00 1.82
614 623 3.561120 ATGGCCCCGCTCGTCAAAA 62.561 57.895 0.00 0.00 0.00 2.44
615 624 4.028490 ATGGCCCCGCTCGTCAAA 62.028 61.111 0.00 0.00 0.00 2.69
616 625 4.776322 CATGGCCCCGCTCGTCAA 62.776 66.667 0.00 0.00 0.00 3.18
618 627 3.792053 CTACATGGCCCCGCTCGTC 62.792 68.421 0.00 0.00 0.00 4.20
619 628 3.849951 CTACATGGCCCCGCTCGT 61.850 66.667 0.00 0.00 0.00 4.18
620 629 4.609018 CCTACATGGCCCCGCTCG 62.609 72.222 0.00 0.00 0.00 5.03
621 630 4.256180 CCCTACATGGCCCCGCTC 62.256 72.222 0.00 0.00 0.00 5.03
623 632 4.564110 GACCCTACATGGCCCCGC 62.564 72.222 0.00 0.00 0.00 6.13
624 633 4.235762 CGACCCTACATGGCCCCG 62.236 72.222 0.00 0.00 0.00 5.73
625 634 2.766651 TCGACCCTACATGGCCCC 60.767 66.667 0.00 0.00 0.00 5.80
626 635 2.029307 GACTCGACCCTACATGGCCC 62.029 65.000 0.00 0.00 0.00 5.80
627 636 1.442148 GACTCGACCCTACATGGCC 59.558 63.158 0.00 0.00 0.00 5.36
628 637 1.327690 TGGACTCGACCCTACATGGC 61.328 60.000 0.00 0.00 0.00 4.40
629 638 0.460311 GTGGACTCGACCCTACATGG 59.540 60.000 0.00 0.00 0.00 3.66
630 639 0.460311 GGTGGACTCGACCCTACATG 59.540 60.000 0.00 0.00 0.00 3.21
631 640 0.335361 AGGTGGACTCGACCCTACAT 59.665 55.000 6.61 0.00 33.51 2.29
632 641 0.113776 AAGGTGGACTCGACCCTACA 59.886 55.000 6.61 0.00 33.51 2.74
633 642 1.067071 CAAAGGTGGACTCGACCCTAC 60.067 57.143 6.61 0.00 33.51 3.18
634 643 1.203087 TCAAAGGTGGACTCGACCCTA 60.203 52.381 6.61 0.00 33.51 3.53
635 644 0.471211 TCAAAGGTGGACTCGACCCT 60.471 55.000 6.61 0.00 33.51 4.34
636 645 0.320508 GTCAAAGGTGGACTCGACCC 60.321 60.000 6.61 0.00 33.51 4.46
637 646 0.320508 GGTCAAAGGTGGACTCGACC 60.321 60.000 1.98 1.98 36.46 4.79
638 647 0.666577 CGGTCAAAGGTGGACTCGAC 60.667 60.000 0.00 0.00 35.61 4.20
639 648 1.111116 ACGGTCAAAGGTGGACTCGA 61.111 55.000 0.00 0.00 34.91 4.04
640 649 0.249741 AACGGTCAAAGGTGGACTCG 60.250 55.000 0.00 0.00 35.61 4.18
641 650 2.804527 GTTAACGGTCAAAGGTGGACTC 59.195 50.000 0.00 0.00 35.61 3.36
642 651 2.436911 AGTTAACGGTCAAAGGTGGACT 59.563 45.455 0.00 0.00 35.61 3.85
643 652 2.804527 GAGTTAACGGTCAAAGGTGGAC 59.195 50.000 0.00 0.00 34.52 4.02
644 653 2.701951 AGAGTTAACGGTCAAAGGTGGA 59.298 45.455 0.00 0.00 0.00 4.02
645 654 2.806244 CAGAGTTAACGGTCAAAGGTGG 59.194 50.000 0.00 0.00 0.00 4.61
646 655 3.724374 TCAGAGTTAACGGTCAAAGGTG 58.276 45.455 0.00 0.00 0.00 4.00
647 656 3.640029 TCTCAGAGTTAACGGTCAAAGGT 59.360 43.478 0.00 0.00 0.00 3.50
702 762 6.591062 GGTCAACATACAAAACCACTATACGA 59.409 38.462 0.00 0.00 0.00 3.43
778 839 2.184322 CCATGGACGCGTGCTACT 59.816 61.111 30.67 13.27 0.00 2.57
910 1023 0.109039 GTGGAGGAGAGCAAGACGAC 60.109 60.000 0.00 0.00 0.00 4.34
917 1030 1.986757 GAGGCAGTGGAGGAGAGCA 60.987 63.158 0.00 0.00 0.00 4.26
1057 1171 4.094646 ATCCATGGTCACCGCGCA 62.095 61.111 12.58 0.00 0.00 6.09
1710 1852 2.797074 TTGTCATGCACACACATTGG 57.203 45.000 0.00 0.00 33.41 3.16
2088 2253 2.096248 TCTTCTCCTCTTCCTTCGCTC 58.904 52.381 0.00 0.00 0.00 5.03
2138 2303 2.261345 CCAAATGTTGGTATTGCGCTG 58.739 47.619 9.73 0.00 45.93 5.18
2163 2328 1.772567 TTGGTGGTGCAGTAGGGGT 60.773 57.895 0.00 0.00 0.00 4.95
2287 2452 1.645710 GAAGGGGAGTCAGGACTTCA 58.354 55.000 9.81 0.00 42.66 3.02
2350 2558 3.689161 TCCAGTTCACACACAAAGTTCAG 59.311 43.478 0.00 0.00 0.00 3.02
2439 2655 8.227119 AGCAGACAAATTTAAAAACACACAAAC 58.773 29.630 0.00 0.00 0.00 2.93
2794 3033 6.857437 AGATAGCTTGCCAAGGTTTTAATT 57.143 33.333 15.12 0.00 40.27 1.40
2795 3034 7.561356 ACATAGATAGCTTGCCAAGGTTTTAAT 59.439 33.333 15.12 1.74 40.27 1.40
2796 3035 6.889722 ACATAGATAGCTTGCCAAGGTTTTAA 59.110 34.615 15.12 0.00 40.27 1.52
2811 3050 7.661968 TGATCTCCTACACAAACATAGATAGC 58.338 38.462 0.00 0.00 0.00 2.97
2920 3159 6.978674 TGATTACAAATGGGGTTGTTTACA 57.021 33.333 0.00 0.00 41.84 2.41
3138 3401 9.358872 GCTTTATTTCAAAGTGAATAAGAAGGG 57.641 33.333 10.01 0.00 36.11 3.95
3215 3484 3.637769 AGAGTTCATGGAGAGGAGGTAC 58.362 50.000 0.00 0.00 0.00 3.34
3228 3497 7.817478 TCACGTACAACATTTCATAGAGTTCAT 59.183 33.333 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.