Multiple sequence alignment - TraesCS4D01G018500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G018500 chr4D 100.000 2623 0 0 1 2623 7910059 7912681 0.000000e+00 4844
1 TraesCS4D01G018500 chr4A 89.323 1639 61 44 497 2109 595360762 595359212 0.000000e+00 1953
2 TraesCS4D01G018500 chr4A 90.462 325 21 7 128 450 595361948 595361632 1.120000e-113 420
3 TraesCS4D01G018500 chr4A 87.831 189 18 3 2244 2431 595359160 595358976 1.580000e-52 217
4 TraesCS4D01G018500 chr4A 96.970 99 3 0 1 99 595362024 595361926 1.610000e-37 167
5 TraesCS4D01G018500 chr4B 89.099 1532 67 50 458 1969 14388019 14389470 0.000000e+00 1812
6 TraesCS4D01G018500 chr4B 87.077 325 29 11 128 451 14386985 14387297 3.210000e-94 355
7 TraesCS4D01G018500 chr4B 90.909 99 8 1 1 99 6961931 6962028 5.890000e-27 132
8 TraesCS4D01G018500 chr5A 76.323 718 104 42 972 1638 10481168 10480466 9.050000e-85 324
9 TraesCS4D01G018500 chr5B 77.266 651 78 43 1000 1612 13179476 13178858 4.210000e-83 318
10 TraesCS4D01G018500 chr5D 76.415 636 93 42 1000 1608 13719623 13719018 9.180000e-75 291
11 TraesCS4D01G018500 chr2B 96.000 75 3 0 2549 2623 449522472 449522546 3.550000e-24 122
12 TraesCS4D01G018500 chr1B 96.000 75 3 0 2549 2623 214570932 214570858 3.550000e-24 122
13 TraesCS4D01G018500 chr3B 74.138 348 62 18 126 451 492224875 492224534 4.590000e-23 119
14 TraesCS4D01G018500 chr7B 94.667 75 4 0 2549 2623 692789666 692789592 1.650000e-22 117
15 TraesCS4D01G018500 chr3A 94.667 75 4 0 2549 2623 85477239 85477313 1.650000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G018500 chr4D 7910059 7912681 2622 False 4844.00 4844 100.0000 1 2623 1 chr4D.!!$F1 2622
1 TraesCS4D01G018500 chr4A 595358976 595362024 3048 True 689.25 1953 91.1465 1 2431 4 chr4A.!!$R1 2430
2 TraesCS4D01G018500 chr4B 14386985 14389470 2485 False 1083.50 1812 88.0880 128 1969 2 chr4B.!!$F2 1841
3 TraesCS4D01G018500 chr5A 10480466 10481168 702 True 324.00 324 76.3230 972 1638 1 chr5A.!!$R1 666
4 TraesCS4D01G018500 chr5B 13178858 13179476 618 True 318.00 318 77.2660 1000 1612 1 chr5B.!!$R1 612
5 TraesCS4D01G018500 chr5D 13719018 13719623 605 True 291.00 291 76.4150 1000 1608 1 chr5D.!!$R1 608

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
777 1632 0.109342 AAATATCTCGCCCCAGCCAG 59.891 55.0 0.0 0.0 34.57 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2199 3282 0.096281 AACAGACACGCACAAACACG 59.904 50.0 0.0 0.0 0.0 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 5.124936 GGTTGTTTATTGGTGGTGATCCTAC 59.875 44.000 0.00 0.00 34.23 3.18
78 79 7.553881 TTAAAGGCATCAAGAGTATTGCTAC 57.446 36.000 0.00 0.00 35.46 3.58
79 80 5.365021 AAGGCATCAAGAGTATTGCTACT 57.635 39.130 0.00 0.00 40.98 2.57
91 92 6.986904 AGTATTGCTACTCAAAAAGCTACC 57.013 37.500 0.00 0.00 39.53 3.18
92 93 6.712276 AGTATTGCTACTCAAAAAGCTACCT 58.288 36.000 0.00 0.00 39.53 3.08
93 94 6.819146 AGTATTGCTACTCAAAAAGCTACCTC 59.181 38.462 0.00 0.00 39.53 3.85
94 95 3.939066 TGCTACTCAAAAAGCTACCTCC 58.061 45.455 0.00 0.00 39.53 4.30
95 96 3.271729 GCTACTCAAAAAGCTACCTCCC 58.728 50.000 0.00 0.00 35.80 4.30
96 97 3.307480 GCTACTCAAAAAGCTACCTCCCA 60.307 47.826 0.00 0.00 35.80 4.37
97 98 4.626529 GCTACTCAAAAAGCTACCTCCCAT 60.627 45.833 0.00 0.00 35.80 4.00
98 99 4.388577 ACTCAAAAAGCTACCTCCCATT 57.611 40.909 0.00 0.00 0.00 3.16
99 100 4.740902 ACTCAAAAAGCTACCTCCCATTT 58.259 39.130 0.00 0.00 0.00 2.32
100 101 5.147767 ACTCAAAAAGCTACCTCCCATTTT 58.852 37.500 0.00 0.00 0.00 1.82
101 102 5.602561 ACTCAAAAAGCTACCTCCCATTTTT 59.397 36.000 0.00 0.00 34.35 1.94
305 307 4.142116 GGGCTTCTAACTCAGGAGAAGTAC 60.142 50.000 16.19 11.18 46.92 2.73
307 309 4.707934 GCTTCTAACTCAGGAGAAGTACCT 59.292 45.833 16.19 0.00 46.92 3.08
338 340 9.952188 TTGAAGAACTAGACATGATATAACGAG 57.048 33.333 0.00 0.00 0.00 4.18
339 341 8.076781 TGAAGAACTAGACATGATATAACGAGC 58.923 37.037 0.00 0.00 0.00 5.03
340 342 7.753309 AGAACTAGACATGATATAACGAGCT 57.247 36.000 0.00 0.00 0.00 4.09
345 347 9.680315 ACTAGACATGATATAACGAGCTAAAAC 57.320 33.333 0.00 0.00 0.00 2.43
366 368 8.485976 AAAACAAAAATTACTACTTGCTGCAA 57.514 26.923 15.16 15.16 0.00 4.08
372 374 9.934190 AAAAATTACTACTTGCTGCAATTTTTG 57.066 25.926 22.28 12.54 40.90 2.44
373 375 8.661352 AAATTACTACTTGCTGCAATTTTTGT 57.339 26.923 16.38 12.02 0.00 2.83
374 376 7.642071 ATTACTACTTGCTGCAATTTTTGTG 57.358 32.000 16.38 4.78 0.00 3.33
375 377 5.009854 ACTACTTGCTGCAATTTTTGTGT 57.990 34.783 16.38 10.60 0.00 3.72
376 378 4.805192 ACTACTTGCTGCAATTTTTGTGTG 59.195 37.500 16.38 9.48 0.00 3.82
377 379 3.598299 ACTTGCTGCAATTTTTGTGTGT 58.402 36.364 16.38 3.95 0.00 3.72
378 380 3.371591 ACTTGCTGCAATTTTTGTGTGTG 59.628 39.130 16.38 2.02 0.00 3.82
451 453 7.026562 GCAACAAAAAGTAACCAAGCAAAATT 58.973 30.769 0.00 0.00 0.00 1.82
452 454 7.218014 GCAACAAAAAGTAACCAAGCAAAATTC 59.782 33.333 0.00 0.00 0.00 2.17
467 1313 3.655276 AAATTCTGCAGCCTTGTTCAG 57.345 42.857 9.47 0.00 0.00 3.02
473 1319 4.397420 TCTGCAGCCTTGTTCAGAAAATA 58.603 39.130 9.47 0.00 33.17 1.40
480 1326 7.062255 GCAGCCTTGTTCAGAAAATAATGTTAC 59.938 37.037 0.00 0.00 0.00 2.50
481 1327 8.081633 CAGCCTTGTTCAGAAAATAATGTTACA 58.918 33.333 0.00 0.00 0.00 2.41
509 1355 8.225416 AGGAGTATTACCAAAGAAAGGAAAACT 58.775 33.333 0.00 0.00 0.00 2.66
535 1381 2.039418 TCACTCCAAGTGTGCACTAGT 58.961 47.619 19.41 8.75 46.03 2.57
536 1382 3.227614 TCACTCCAAGTGTGCACTAGTA 58.772 45.455 19.41 0.00 46.03 1.82
542 1388 1.217244 GTGTGCACTAGTACCCCGG 59.783 63.158 19.41 0.00 0.00 5.73
671 1519 1.270678 CCGTCCGAAAATATCTCCCCC 60.271 57.143 0.00 0.00 0.00 5.40
691 1543 4.544689 CGCGAGCGAGTCAGGAGG 62.545 72.222 12.58 0.00 42.83 4.30
733 1585 4.633769 GCCCAGAAAGCCAGAGAG 57.366 61.111 0.00 0.00 0.00 3.20
734 1586 1.748500 GCCCAGAAAGCCAGAGAGC 60.749 63.158 0.00 0.00 0.00 4.09
735 1587 1.077858 CCCAGAAAGCCAGAGAGCC 60.078 63.158 0.00 0.00 0.00 4.70
736 1588 1.449246 CCAGAAAGCCAGAGAGCCG 60.449 63.158 0.00 0.00 0.00 5.52
774 1629 0.868406 CGAAAATATCTCGCCCCAGC 59.132 55.000 0.00 0.00 0.00 4.85
775 1630 1.239347 GAAAATATCTCGCCCCAGCC 58.761 55.000 0.00 0.00 34.57 4.85
776 1631 0.550914 AAAATATCTCGCCCCAGCCA 59.449 50.000 0.00 0.00 34.57 4.75
777 1632 0.109342 AAATATCTCGCCCCAGCCAG 59.891 55.000 0.00 0.00 34.57 4.85
778 1633 2.403132 AATATCTCGCCCCAGCCAGC 62.403 60.000 0.00 0.00 34.57 4.85
784 1639 4.891037 GCCCCAGCCAGCCAGATC 62.891 72.222 0.00 0.00 0.00 2.75
804 1659 2.273179 CCCGATCCTTATCCCGCGA 61.273 63.158 8.23 0.00 0.00 5.87
806 1661 1.442184 CGATCCTTATCCCGCGACG 60.442 63.158 8.23 0.00 0.00 5.12
1115 1977 1.681793 CATCGACTCCAAGGTACCGAT 59.318 52.381 6.18 0.00 37.25 4.18
1121 1983 2.803817 CCAAGGTACCGATCCCCCG 61.804 68.421 6.18 0.00 0.00 5.73
1123 1985 1.759692 AAGGTACCGATCCCCCGTC 60.760 63.158 6.18 0.00 0.00 4.79
1124 1986 2.123554 GGTACCGATCCCCCGTCT 60.124 66.667 0.00 0.00 0.00 4.18
1151 2054 0.378962 CGATCCGCCCGATAGATCTC 59.621 60.000 0.00 0.00 35.34 2.75
1160 2074 4.379603 CGCCCGATAGATCTCTAAATTCGT 60.380 45.833 0.00 0.00 39.76 3.85
1186 2100 0.670162 ATCTGTGGTGTTGTGCTTGC 59.330 50.000 0.00 0.00 0.00 4.01
1451 2404 4.373116 GGCCAGCGTCGTGAAGGA 62.373 66.667 0.00 0.00 0.00 3.36
1454 2407 2.636412 CCAGCGTCGTGAAGGAGGA 61.636 63.158 0.00 0.00 0.00 3.71
1634 2668 2.438434 GAGTGAATGGTGGGGCCG 60.438 66.667 0.00 0.00 41.21 6.13
1702 2737 1.202031 CCAAAAGTGTTATCGCTCGCC 60.202 52.381 0.00 0.00 32.83 5.54
1792 2831 1.072666 CGCTACCGTTCCGTGTTACC 61.073 60.000 0.00 0.00 0.00 2.85
1808 2853 1.818959 TACCTGTTCCGTCCCCGTTG 61.819 60.000 0.00 0.00 0.00 4.10
1851 2910 3.812609 TCAGAGCAAAGTTTGTTCGCATA 59.187 39.130 21.97 9.75 44.40 3.14
1910 2970 0.524604 GTTTGTGCCGTGAACGCTTT 60.525 50.000 0.00 0.00 38.18 3.51
1911 2971 1.015109 TTTGTGCCGTGAACGCTTTA 58.985 45.000 0.00 0.00 38.18 1.85
1919 2996 0.110373 GTGAACGCTTTACCTTGCCG 60.110 55.000 0.00 0.00 0.00 5.69
1936 3013 1.610522 GCCGCTGGATGATATTTTGCT 59.389 47.619 0.00 0.00 0.00 3.91
1970 3050 2.598589 CCATGTTTTGGTGCAGATTCG 58.401 47.619 0.00 0.00 40.99 3.34
1993 3073 1.037030 GCCCCTGAATTCGATTGGCA 61.037 55.000 17.96 0.00 37.36 4.92
1998 3078 1.062587 CTGAATTCGATTGGCACGACC 59.937 52.381 0.00 0.00 39.46 4.79
2016 3096 4.785453 GGGGCGTGCTCCTCCTTG 62.785 72.222 2.75 0.00 32.70 3.61
2017 3097 4.021925 GGGCGTGCTCCTCCTTGT 62.022 66.667 0.00 0.00 0.00 3.16
2018 3098 2.032681 GGCGTGCTCCTCCTTGTT 59.967 61.111 0.00 0.00 0.00 2.83
2019 3099 1.295423 GGCGTGCTCCTCCTTGTTA 59.705 57.895 0.00 0.00 0.00 2.41
2040 3123 8.707796 TGTTAATGTTCCCCAGTATTGTTTAA 57.292 30.769 0.00 0.00 0.00 1.52
2058 3141 9.965824 ATTGTTTAAATTCTCTTCGTTCATGTT 57.034 25.926 0.00 0.00 0.00 2.71
2060 3143 9.445786 TGTTTAAATTCTCTTCGTTCATGTTTC 57.554 29.630 0.00 0.00 0.00 2.78
2061 3144 8.902735 GTTTAAATTCTCTTCGTTCATGTTTCC 58.097 33.333 0.00 0.00 0.00 3.13
2068 3151 4.517453 TCTTCGTTCATGTTTCCCGAATTT 59.483 37.500 0.00 0.00 36.99 1.82
2078 3161 4.100189 TGTTTCCCGAATTTGTTGTTGGAT 59.900 37.500 0.00 0.00 0.00 3.41
2081 3164 4.399219 TCCCGAATTTGTTGTTGGATGTA 58.601 39.130 0.00 0.00 0.00 2.29
2104 3187 9.226606 TGTATCCAGACGAATCTAACAAATTTT 57.773 29.630 0.00 0.00 32.25 1.82
2109 3192 4.481463 ACGAATCTAACAAATTTTGGCCG 58.519 39.130 13.42 7.84 34.12 6.13
2110 3193 3.857093 CGAATCTAACAAATTTTGGCCGG 59.143 43.478 13.42 0.00 34.12 6.13
2111 3194 4.380023 CGAATCTAACAAATTTTGGCCGGA 60.380 41.667 5.05 6.48 34.12 5.14
2127 3210 0.451783 CGGAGGTAATTTGCCTGTGC 59.548 55.000 11.07 0.00 36.29 4.57
2129 3212 1.544724 GAGGTAATTTGCCTGTGCCA 58.455 50.000 11.07 0.00 36.29 4.92
2130 3213 2.102578 GAGGTAATTTGCCTGTGCCAT 58.897 47.619 11.07 0.00 36.29 4.40
2132 3215 2.102578 GGTAATTTGCCTGTGCCATCT 58.897 47.619 0.00 0.00 36.33 2.90
2133 3216 2.497273 GGTAATTTGCCTGTGCCATCTT 59.503 45.455 0.00 0.00 36.33 2.40
2134 3217 3.429410 GGTAATTTGCCTGTGCCATCTTC 60.429 47.826 0.00 0.00 36.33 2.87
2135 3218 1.188863 ATTTGCCTGTGCCATCTTCC 58.811 50.000 0.00 0.00 36.33 3.46
2137 3220 2.045926 GCCTGTGCCATCTTCCGT 60.046 61.111 0.00 0.00 0.00 4.69
2138 3221 2.109126 GCCTGTGCCATCTTCCGTC 61.109 63.158 0.00 0.00 0.00 4.79
2140 3223 1.296392 CTGTGCCATCTTCCGTCCA 59.704 57.895 0.00 0.00 0.00 4.02
2141 3224 1.003839 TGTGCCATCTTCCGTCCAC 60.004 57.895 0.00 0.00 0.00 4.02
2142 3225 1.745489 GTGCCATCTTCCGTCCACC 60.745 63.158 0.00 0.00 0.00 4.61
2144 3227 2.590092 CCATCTTCCGTCCACCCC 59.410 66.667 0.00 0.00 0.00 4.95
2145 3228 1.995626 CCATCTTCCGTCCACCCCT 60.996 63.158 0.00 0.00 0.00 4.79
2146 3229 1.562672 CCATCTTCCGTCCACCCCTT 61.563 60.000 0.00 0.00 0.00 3.95
2147 3230 0.107654 CATCTTCCGTCCACCCCTTC 60.108 60.000 0.00 0.00 0.00 3.46
2148 3231 1.272554 ATCTTCCGTCCACCCCTTCC 61.273 60.000 0.00 0.00 0.00 3.46
2149 3232 2.122324 TTCCGTCCACCCCTTCCA 60.122 61.111 0.00 0.00 0.00 3.53
2150 3233 2.185310 CTTCCGTCCACCCCTTCCAG 62.185 65.000 0.00 0.00 0.00 3.86
2152 3235 1.995626 CCGTCCACCCCTTCCAGAT 60.996 63.158 0.00 0.00 0.00 2.90
2154 3237 0.107654 CGTCCACCCCTTCCAGATTC 60.108 60.000 0.00 0.00 0.00 2.52
2156 3239 1.065126 GTCCACCCCTTCCAGATTCAG 60.065 57.143 0.00 0.00 0.00 3.02
2157 3240 1.203428 TCCACCCCTTCCAGATTCAGA 60.203 52.381 0.00 0.00 0.00 3.27
2158 3241 1.211457 CCACCCCTTCCAGATTCAGAG 59.789 57.143 0.00 0.00 0.00 3.35
2159 3242 0.915364 ACCCCTTCCAGATTCAGAGC 59.085 55.000 0.00 0.00 0.00 4.09
2160 3243 0.914644 CCCCTTCCAGATTCAGAGCA 59.085 55.000 0.00 0.00 0.00 4.26
2161 3244 1.283029 CCCCTTCCAGATTCAGAGCAA 59.717 52.381 0.00 0.00 0.00 3.91
2162 3245 2.291153 CCCCTTCCAGATTCAGAGCAAA 60.291 50.000 0.00 0.00 0.00 3.68
2163 3246 3.424703 CCCTTCCAGATTCAGAGCAAAA 58.575 45.455 0.00 0.00 0.00 2.44
2164 3247 4.021916 CCCTTCCAGATTCAGAGCAAAAT 58.978 43.478 0.00 0.00 0.00 1.82
2165 3248 4.142227 CCCTTCCAGATTCAGAGCAAAATG 60.142 45.833 0.00 0.00 0.00 2.32
2166 3249 4.461781 CCTTCCAGATTCAGAGCAAAATGT 59.538 41.667 0.00 0.00 0.00 2.71
2167 3250 5.047519 CCTTCCAGATTCAGAGCAAAATGTT 60.048 40.000 0.00 0.00 0.00 2.71
2168 3251 6.151648 CCTTCCAGATTCAGAGCAAAATGTTA 59.848 38.462 0.00 0.00 0.00 2.41
2169 3252 6.748333 TCCAGATTCAGAGCAAAATGTTAG 57.252 37.500 0.00 0.00 0.00 2.34
2170 3253 6.475504 TCCAGATTCAGAGCAAAATGTTAGA 58.524 36.000 0.00 0.00 0.00 2.10
2171 3254 7.114754 TCCAGATTCAGAGCAAAATGTTAGAT 58.885 34.615 0.00 0.00 0.00 1.98
2172 3255 7.613022 TCCAGATTCAGAGCAAAATGTTAGATT 59.387 33.333 0.00 0.00 0.00 2.40
2173 3256 8.248945 CCAGATTCAGAGCAAAATGTTAGATTT 58.751 33.333 0.00 0.00 0.00 2.17
2174 3257 9.286946 CAGATTCAGAGCAAAATGTTAGATTTC 57.713 33.333 0.00 0.00 0.00 2.17
2175 3258 9.240734 AGATTCAGAGCAAAATGTTAGATTTCT 57.759 29.630 0.00 0.00 0.00 2.52
2176 3259 9.852091 GATTCAGAGCAAAATGTTAGATTTCTT 57.148 29.630 0.00 0.00 0.00 2.52
2177 3260 9.635520 ATTCAGAGCAAAATGTTAGATTTCTTG 57.364 29.630 0.00 0.00 0.00 3.02
2178 3261 7.086376 TCAGAGCAAAATGTTAGATTTCTTGC 58.914 34.615 4.09 4.09 0.00 4.01
2179 3262 6.033196 CAGAGCAAAATGTTAGATTTCTTGCG 59.967 38.462 6.05 0.00 0.00 4.85
2180 3263 6.012658 AGCAAAATGTTAGATTTCTTGCGA 57.987 33.333 6.05 0.00 0.00 5.10
2181 3264 5.858581 AGCAAAATGTTAGATTTCTTGCGAC 59.141 36.000 6.05 0.00 0.00 5.19
2182 3265 5.629020 GCAAAATGTTAGATTTCTTGCGACA 59.371 36.000 0.00 0.00 0.00 4.35
2183 3266 6.398935 GCAAAATGTTAGATTTCTTGCGACAC 60.399 38.462 0.00 0.00 0.00 3.67
2184 3267 5.940192 AATGTTAGATTTCTTGCGACACA 57.060 34.783 0.00 0.00 0.00 3.72
2185 3268 4.990543 TGTTAGATTTCTTGCGACACAG 57.009 40.909 0.00 0.00 0.00 3.66
2186 3269 3.745975 TGTTAGATTTCTTGCGACACAGG 59.254 43.478 0.00 0.00 0.00 4.00
2187 3270 1.813513 AGATTTCTTGCGACACAGGG 58.186 50.000 0.00 0.00 0.00 4.45
2188 3271 1.072331 AGATTTCTTGCGACACAGGGT 59.928 47.619 0.00 0.00 0.00 4.34
2189 3272 1.880027 GATTTCTTGCGACACAGGGTT 59.120 47.619 0.00 0.00 0.00 4.11
2190 3273 1.757682 TTTCTTGCGACACAGGGTTT 58.242 45.000 0.00 0.00 0.00 3.27
2191 3274 2.623878 TTCTTGCGACACAGGGTTTA 57.376 45.000 0.00 0.00 0.00 2.01
2192 3275 2.623878 TCTTGCGACACAGGGTTTAA 57.376 45.000 0.00 0.00 0.00 1.52
2193 3276 3.134574 TCTTGCGACACAGGGTTTAAT 57.865 42.857 0.00 0.00 0.00 1.40
2194 3277 3.482436 TCTTGCGACACAGGGTTTAATT 58.518 40.909 0.00 0.00 0.00 1.40
2195 3278 3.252215 TCTTGCGACACAGGGTTTAATTG 59.748 43.478 0.00 0.00 0.00 2.32
2196 3279 2.852449 TGCGACACAGGGTTTAATTGA 58.148 42.857 0.00 0.00 0.00 2.57
2197 3280 3.417101 TGCGACACAGGGTTTAATTGAT 58.583 40.909 0.00 0.00 0.00 2.57
2198 3281 3.823873 TGCGACACAGGGTTTAATTGATT 59.176 39.130 0.00 0.00 0.00 2.57
2199 3282 4.083003 TGCGACACAGGGTTTAATTGATTC 60.083 41.667 0.00 0.00 0.00 2.52
2200 3283 4.647964 CGACACAGGGTTTAATTGATTCG 58.352 43.478 0.00 0.00 0.00 3.34
2201 3284 4.153475 CGACACAGGGTTTAATTGATTCGT 59.847 41.667 0.00 0.00 0.00 3.85
2202 3285 5.371115 ACACAGGGTTTAATTGATTCGTG 57.629 39.130 0.00 0.00 0.00 4.35
2203 3286 4.825085 ACACAGGGTTTAATTGATTCGTGT 59.175 37.500 0.00 0.00 0.00 4.49
2204 3287 5.300792 ACACAGGGTTTAATTGATTCGTGTT 59.699 36.000 0.00 0.00 30.13 3.32
2205 3288 6.183360 ACACAGGGTTTAATTGATTCGTGTTT 60.183 34.615 0.00 0.00 30.13 2.83
2206 3289 6.143758 CACAGGGTTTAATTGATTCGTGTTTG 59.856 38.462 0.00 0.00 0.00 2.93
2207 3290 6.183360 ACAGGGTTTAATTGATTCGTGTTTGT 60.183 34.615 0.00 0.00 0.00 2.83
2208 3291 6.143758 CAGGGTTTAATTGATTCGTGTTTGTG 59.856 38.462 0.00 0.00 0.00 3.33
2209 3292 5.107645 GGGTTTAATTGATTCGTGTTTGTGC 60.108 40.000 0.00 0.00 0.00 4.57
2210 3293 5.386933 GGTTTAATTGATTCGTGTTTGTGCG 60.387 40.000 0.00 0.00 0.00 5.34
2211 3294 3.347958 AATTGATTCGTGTTTGTGCGT 57.652 38.095 0.00 0.00 0.00 5.24
2212 3295 2.098215 TTGATTCGTGTTTGTGCGTG 57.902 45.000 0.00 0.00 0.00 5.34
2213 3296 1.010580 TGATTCGTGTTTGTGCGTGT 58.989 45.000 0.00 0.00 0.00 4.49
2214 3297 1.004398 TGATTCGTGTTTGTGCGTGTC 60.004 47.619 0.00 0.00 0.00 3.67
2215 3298 1.260561 GATTCGTGTTTGTGCGTGTCT 59.739 47.619 0.00 0.00 0.00 3.41
2216 3299 0.371989 TTCGTGTTTGTGCGTGTCTG 59.628 50.000 0.00 0.00 0.00 3.51
2217 3300 0.738063 TCGTGTTTGTGCGTGTCTGT 60.738 50.000 0.00 0.00 0.00 3.41
2218 3301 0.096281 CGTGTTTGTGCGTGTCTGTT 59.904 50.000 0.00 0.00 0.00 3.16
2219 3302 1.465020 CGTGTTTGTGCGTGTCTGTTT 60.465 47.619 0.00 0.00 0.00 2.83
2220 3303 1.910819 GTGTTTGTGCGTGTCTGTTTG 59.089 47.619 0.00 0.00 0.00 2.93
2221 3304 1.537638 TGTTTGTGCGTGTCTGTTTGT 59.462 42.857 0.00 0.00 0.00 2.83
2222 3305 1.910819 GTTTGTGCGTGTCTGTTTGTG 59.089 47.619 0.00 0.00 0.00 3.33
2223 3306 1.160989 TTGTGCGTGTCTGTTTGTGT 58.839 45.000 0.00 0.00 0.00 3.72
2224 3307 1.160989 TGTGCGTGTCTGTTTGTGTT 58.839 45.000 0.00 0.00 0.00 3.32
2225 3308 1.537638 TGTGCGTGTCTGTTTGTGTTT 59.462 42.857 0.00 0.00 0.00 2.83
2226 3309 2.030717 TGTGCGTGTCTGTTTGTGTTTT 60.031 40.909 0.00 0.00 0.00 2.43
2227 3310 3.188667 TGTGCGTGTCTGTTTGTGTTTTA 59.811 39.130 0.00 0.00 0.00 1.52
2228 3311 3.540738 GTGCGTGTCTGTTTGTGTTTTAC 59.459 43.478 0.00 0.00 0.00 2.01
2229 3312 3.188667 TGCGTGTCTGTTTGTGTTTTACA 59.811 39.130 0.00 0.00 37.56 2.41
2230 3313 4.142578 TGCGTGTCTGTTTGTGTTTTACAT 60.143 37.500 0.00 0.00 39.48 2.29
2231 3314 5.064834 TGCGTGTCTGTTTGTGTTTTACATA 59.935 36.000 0.00 0.00 39.48 2.29
2232 3315 5.619607 GCGTGTCTGTTTGTGTTTTACATAG 59.380 40.000 0.00 0.00 39.48 2.23
2233 3316 6.510478 GCGTGTCTGTTTGTGTTTTACATAGA 60.510 38.462 0.00 0.00 39.48 1.98
2234 3317 7.063456 CGTGTCTGTTTGTGTTTTACATAGAG 58.937 38.462 0.00 0.00 39.48 2.43
2235 3318 7.352739 GTGTCTGTTTGTGTTTTACATAGAGG 58.647 38.462 0.00 0.00 39.48 3.69
2236 3319 6.485313 TGTCTGTTTGTGTTTTACATAGAGGG 59.515 38.462 0.00 0.00 39.48 4.30
2237 3320 5.472137 TCTGTTTGTGTTTTACATAGAGGGC 59.528 40.000 0.00 0.00 39.48 5.19
2238 3321 5.133941 TGTTTGTGTTTTACATAGAGGGCA 58.866 37.500 0.00 0.00 39.48 5.36
2239 3322 5.009210 TGTTTGTGTTTTACATAGAGGGCAC 59.991 40.000 0.00 0.00 39.48 5.01
2240 3323 4.359434 TGTGTTTTACATAGAGGGCACA 57.641 40.909 0.00 0.00 33.42 4.57
2241 3324 4.069304 TGTGTTTTACATAGAGGGCACAC 58.931 43.478 0.00 0.00 33.42 3.82
2242 3325 4.069304 GTGTTTTACATAGAGGGCACACA 58.931 43.478 0.00 0.00 34.66 3.72
2261 3344 8.408601 GGCACACATGATTTCTAATTGAAGTAT 58.591 33.333 0.00 0.00 35.89 2.12
2302 3386 5.187772 TGATACTTCAGTCATAGTGCAACCT 59.812 40.000 0.00 0.00 37.80 3.50
2305 3389 3.769739 TCAGTCATAGTGCAACCTTGT 57.230 42.857 0.00 0.00 37.80 3.16
2334 3418 6.537660 GTCATCAGTGATCAACATCAGATTCA 59.462 38.462 1.56 0.00 39.86 2.57
2346 3430 8.480501 TCAACATCAGATTCATCAGATCAACTA 58.519 33.333 0.00 0.00 31.68 2.24
2354 3438 8.270030 AGATTCATCAGATCAACTATTTGGACA 58.730 33.333 0.00 0.00 33.06 4.02
2379 3463 4.954875 GAGCATGCTCCAATAGAAGTAGT 58.045 43.478 33.31 0.00 37.11 2.73
2390 3474 8.697846 TCCAATAGAAGTAGTGTTTGAATACG 57.302 34.615 0.00 0.00 0.00 3.06
2392 3476 8.380644 CCAATAGAAGTAGTGTTTGAATACGTG 58.619 37.037 0.00 0.00 0.00 4.49
2402 3486 4.882427 TGTTTGAATACGTGGACCTCAAAA 59.118 37.500 0.00 0.00 37.65 2.44
2406 3490 6.007936 TGAATACGTGGACCTCAAAATTTG 57.992 37.500 0.00 0.00 0.00 2.32
2416 3500 3.964031 ACCTCAAAATTTGTTGGGTGCTA 59.036 39.130 18.48 0.00 33.46 3.49
2425 3509 5.913137 TTTGTTGGGTGCTAAATATCTGG 57.087 39.130 0.00 0.00 0.00 3.86
2427 3511 5.387113 TGTTGGGTGCTAAATATCTGGAT 57.613 39.130 0.00 0.00 0.00 3.41
2431 3515 6.950860 TGGGTGCTAAATATCTGGATATGA 57.049 37.500 4.15 0.00 34.45 2.15
2432 3516 6.950842 TGGGTGCTAAATATCTGGATATGAG 58.049 40.000 4.15 6.26 34.45 2.90
2433 3517 6.730507 TGGGTGCTAAATATCTGGATATGAGA 59.269 38.462 12.88 0.00 34.45 3.27
2434 3518 7.404104 TGGGTGCTAAATATCTGGATATGAGAT 59.596 37.037 12.88 0.00 34.45 2.75
2435 3519 7.714377 GGGTGCTAAATATCTGGATATGAGATG 59.286 40.741 12.88 3.12 34.45 2.90
2436 3520 8.481314 GGTGCTAAATATCTGGATATGAGATGA 58.519 37.037 12.88 0.00 34.45 2.92
2437 3521 9.311916 GTGCTAAATATCTGGATATGAGATGAC 57.688 37.037 12.88 6.05 34.45 3.06
2438 3522 9.264653 TGCTAAATATCTGGATATGAGATGACT 57.735 33.333 12.88 0.00 34.45 3.41
2446 3530 8.672823 TCTGGATATGAGATGACTTGAAAATG 57.327 34.615 0.00 0.00 0.00 2.32
2447 3531 7.718314 TCTGGATATGAGATGACTTGAAAATGG 59.282 37.037 0.00 0.00 0.00 3.16
2448 3532 7.576403 TGGATATGAGATGACTTGAAAATGGA 58.424 34.615 0.00 0.00 0.00 3.41
2449 3533 7.500227 TGGATATGAGATGACTTGAAAATGGAC 59.500 37.037 0.00 0.00 0.00 4.02
2450 3534 7.500227 GGATATGAGATGACTTGAAAATGGACA 59.500 37.037 0.00 0.00 0.00 4.02
2451 3535 8.812513 ATATGAGATGACTTGAAAATGGACAA 57.187 30.769 0.00 0.00 0.00 3.18
2452 3536 6.317789 TGAGATGACTTGAAAATGGACAAC 57.682 37.500 0.00 0.00 0.00 3.32
2453 3537 6.064060 TGAGATGACTTGAAAATGGACAACT 58.936 36.000 0.00 0.00 0.00 3.16
2454 3538 7.223584 TGAGATGACTTGAAAATGGACAACTA 58.776 34.615 0.00 0.00 0.00 2.24
2455 3539 7.173218 TGAGATGACTTGAAAATGGACAACTAC 59.827 37.037 0.00 0.00 0.00 2.73
2456 3540 5.666969 TGACTTGAAAATGGACAACTACG 57.333 39.130 0.00 0.00 0.00 3.51
2457 3541 5.361427 TGACTTGAAAATGGACAACTACGA 58.639 37.500 0.00 0.00 0.00 3.43
2458 3542 5.235616 TGACTTGAAAATGGACAACTACGAC 59.764 40.000 0.00 0.00 0.00 4.34
2459 3543 5.365619 ACTTGAAAATGGACAACTACGACT 58.634 37.500 0.00 0.00 0.00 4.18
2460 3544 5.236478 ACTTGAAAATGGACAACTACGACTG 59.764 40.000 0.00 0.00 0.00 3.51
2461 3545 4.062293 TGAAAATGGACAACTACGACTGG 58.938 43.478 0.00 0.00 0.00 4.00
2462 3546 3.764237 AAATGGACAACTACGACTGGT 57.236 42.857 0.00 0.00 0.00 4.00
2463 3547 3.314541 AATGGACAACTACGACTGGTC 57.685 47.619 0.00 0.00 0.00 4.02
2464 3548 0.963962 TGGACAACTACGACTGGTCC 59.036 55.000 0.00 0.00 46.40 4.46
2465 3549 0.963962 GGACAACTACGACTGGTCCA 59.036 55.000 0.00 0.00 45.70 4.02
2466 3550 1.067776 GGACAACTACGACTGGTCCAG 60.068 57.143 17.88 17.88 45.70 3.86
2468 3552 2.816087 GACAACTACGACTGGTCCAGTA 59.184 50.000 24.80 8.64 45.44 2.74
2469 3553 2.555757 ACAACTACGACTGGTCCAGTAC 59.444 50.000 24.80 16.10 45.44 2.73
2470 3554 1.446907 ACTACGACTGGTCCAGTACG 58.553 55.000 24.80 26.68 45.44 3.67
2471 3555 0.098376 CTACGACTGGTCCAGTACGC 59.902 60.000 28.64 17.13 45.44 4.42
2472 3556 0.606130 TACGACTGGTCCAGTACGCA 60.606 55.000 28.64 20.38 45.44 5.24
2473 3557 1.248785 ACGACTGGTCCAGTACGCAT 61.249 55.000 28.64 16.53 45.44 4.73
2474 3558 0.802222 CGACTGGTCCAGTACGCATG 60.802 60.000 24.80 6.94 45.44 4.06
2475 3559 0.530744 GACTGGTCCAGTACGCATGA 59.469 55.000 24.80 0.00 45.44 3.07
2476 3560 0.532573 ACTGGTCCAGTACGCATGAG 59.467 55.000 23.57 0.00 43.46 2.90
2477 3561 0.817654 CTGGTCCAGTACGCATGAGA 59.182 55.000 11.09 0.00 0.00 3.27
2478 3562 0.817654 TGGTCCAGTACGCATGAGAG 59.182 55.000 2.50 0.00 0.00 3.20
2479 3563 0.528684 GGTCCAGTACGCATGAGAGC 60.529 60.000 2.50 0.00 0.00 4.09
2480 3564 0.457851 GTCCAGTACGCATGAGAGCT 59.542 55.000 2.50 0.00 0.00 4.09
2481 3565 0.741326 TCCAGTACGCATGAGAGCTC 59.259 55.000 5.27 5.27 0.00 4.09
2482 3566 0.457443 CCAGTACGCATGAGAGCTCA 59.543 55.000 17.77 2.23 44.59 4.26
2483 3567 1.134995 CCAGTACGCATGAGAGCTCAA 60.135 52.381 17.77 3.74 43.58 3.02
2484 3568 1.923204 CAGTACGCATGAGAGCTCAAC 59.077 52.381 17.77 10.16 43.58 3.18
2485 3569 0.917259 GTACGCATGAGAGCTCAACG 59.083 55.000 17.77 18.64 43.58 4.10
2486 3570 0.802222 TACGCATGAGAGCTCAACGC 60.802 55.000 17.77 16.20 43.58 4.84
2500 3584 5.532025 GCTCAACGCTTACTTTAGATGTT 57.468 39.130 0.00 0.00 35.14 2.71
2501 3585 5.928153 GCTCAACGCTTACTTTAGATGTTT 58.072 37.500 0.00 0.00 35.14 2.83
2502 3586 7.057149 GCTCAACGCTTACTTTAGATGTTTA 57.943 36.000 0.00 0.00 35.14 2.01
2503 3587 6.954297 GCTCAACGCTTACTTTAGATGTTTAC 59.046 38.462 0.00 0.00 35.14 2.01
2504 3588 7.148623 GCTCAACGCTTACTTTAGATGTTTACT 60.149 37.037 0.00 0.00 35.14 2.24
2505 3589 8.597662 TCAACGCTTACTTTAGATGTTTACTT 57.402 30.769 0.00 0.00 0.00 2.24
2506 3590 9.048446 TCAACGCTTACTTTAGATGTTTACTTT 57.952 29.630 0.00 0.00 0.00 2.66
2507 3591 9.659830 CAACGCTTACTTTAGATGTTTACTTTT 57.340 29.630 0.00 0.00 0.00 2.27
2508 3592 9.659830 AACGCTTACTTTAGATGTTTACTTTTG 57.340 29.630 0.00 0.00 0.00 2.44
2509 3593 9.048446 ACGCTTACTTTAGATGTTTACTTTTGA 57.952 29.630 0.00 0.00 0.00 2.69
2510 3594 9.530129 CGCTTACTTTAGATGTTTACTTTTGAG 57.470 33.333 0.00 0.00 0.00 3.02
2524 3608 8.446599 TTTACTTTTGAGAGTAAAACTGAGGG 57.553 34.615 7.53 0.00 44.67 4.30
2525 3609 6.002653 ACTTTTGAGAGTAAAACTGAGGGT 57.997 37.500 0.00 0.00 0.00 4.34
2526 3610 5.823045 ACTTTTGAGAGTAAAACTGAGGGTG 59.177 40.000 0.00 0.00 0.00 4.61
2527 3611 4.351874 TTGAGAGTAAAACTGAGGGTGG 57.648 45.455 0.00 0.00 0.00 4.61
2528 3612 3.314693 TGAGAGTAAAACTGAGGGTGGT 58.685 45.455 0.00 0.00 0.00 4.16
2529 3613 3.323979 TGAGAGTAAAACTGAGGGTGGTC 59.676 47.826 0.00 0.00 0.00 4.02
2530 3614 2.299297 AGAGTAAAACTGAGGGTGGTCG 59.701 50.000 0.00 0.00 0.00 4.79
2531 3615 2.036862 GAGTAAAACTGAGGGTGGTCGT 59.963 50.000 0.00 0.00 0.00 4.34
2532 3616 3.233507 AGTAAAACTGAGGGTGGTCGTA 58.766 45.455 0.00 0.00 0.00 3.43
2533 3617 2.538512 AAAACTGAGGGTGGTCGTAC 57.461 50.000 0.00 0.00 0.00 3.67
2534 3618 1.713297 AAACTGAGGGTGGTCGTACT 58.287 50.000 0.00 0.00 0.00 2.73
2535 3619 1.254954 AACTGAGGGTGGTCGTACTC 58.745 55.000 0.00 0.00 0.00 2.59
2536 3620 0.404812 ACTGAGGGTGGTCGTACTCT 59.595 55.000 0.00 0.00 33.03 3.24
2537 3621 1.203025 ACTGAGGGTGGTCGTACTCTT 60.203 52.381 0.00 0.00 29.70 2.85
2538 3622 1.202582 CTGAGGGTGGTCGTACTCTTG 59.797 57.143 0.00 0.00 29.70 3.02
2539 3623 0.108756 GAGGGTGGTCGTACTCTTGC 60.109 60.000 0.00 0.00 29.70 4.01
2540 3624 1.079336 GGGTGGTCGTACTCTTGCC 60.079 63.158 0.00 0.00 0.00 4.52
2541 3625 1.669440 GGTGGTCGTACTCTTGCCA 59.331 57.895 0.00 0.00 0.00 4.92
2542 3626 0.669625 GGTGGTCGTACTCTTGCCAC 60.670 60.000 0.00 0.00 46.31 5.01
2543 3627 0.669625 GTGGTCGTACTCTTGCCACC 60.670 60.000 0.00 0.00 42.58 4.61
2544 3628 1.445582 GGTCGTACTCTTGCCACCG 60.446 63.158 0.00 0.00 0.00 4.94
2545 3629 1.288127 GTCGTACTCTTGCCACCGT 59.712 57.895 0.00 0.00 0.00 4.83
2546 3630 0.731855 GTCGTACTCTTGCCACCGTC 60.732 60.000 0.00 0.00 0.00 4.79
2547 3631 0.892358 TCGTACTCTTGCCACCGTCT 60.892 55.000 0.00 0.00 0.00 4.18
2548 3632 0.456312 CGTACTCTTGCCACCGTCTC 60.456 60.000 0.00 0.00 0.00 3.36
2549 3633 0.108756 GTACTCTTGCCACCGTCTCC 60.109 60.000 0.00 0.00 0.00 3.71
2550 3634 0.541063 TACTCTTGCCACCGTCTCCA 60.541 55.000 0.00 0.00 0.00 3.86
2551 3635 1.374758 CTCTTGCCACCGTCTCCAC 60.375 63.158 0.00 0.00 0.00 4.02
2552 3636 2.358737 CTTGCCACCGTCTCCACC 60.359 66.667 0.00 0.00 0.00 4.61
2553 3637 4.308458 TTGCCACCGTCTCCACCG 62.308 66.667 0.00 0.00 0.00 4.94
2561 3645 4.767255 GTCTCCACCGGCCAGCTG 62.767 72.222 6.78 6.78 0.00 4.24
2592 3676 3.437795 CGTCGACGCCTACACCCT 61.438 66.667 26.59 0.00 0.00 4.34
2593 3677 2.968206 GTCGACGCCTACACCCTT 59.032 61.111 0.00 0.00 0.00 3.95
2594 3678 1.445582 GTCGACGCCTACACCCTTG 60.446 63.158 0.00 0.00 0.00 3.61
2595 3679 1.604308 TCGACGCCTACACCCTTGA 60.604 57.895 0.00 0.00 0.00 3.02
2596 3680 1.445582 CGACGCCTACACCCTTGAC 60.446 63.158 0.00 0.00 0.00 3.18
2597 3681 1.445582 GACGCCTACACCCTTGACG 60.446 63.158 0.00 0.00 0.00 4.35
2598 3682 2.125673 CGCCTACACCCTTGACGG 60.126 66.667 0.00 0.00 0.00 4.79
2607 3691 4.410400 CCTTGACGGGGCCAGGTC 62.410 72.222 17.27 17.27 0.00 3.85
2608 3692 3.636231 CTTGACGGGGCCAGGTCA 61.636 66.667 21.42 21.42 41.13 4.02
2609 3693 3.612247 CTTGACGGGGCCAGGTCAG 62.612 68.421 23.20 16.05 43.40 3.51
2618 3702 3.252284 CCAGGTCAGGTGGCCACT 61.252 66.667 33.91 18.03 43.78 4.00
2619 3703 2.348998 CAGGTCAGGTGGCCACTC 59.651 66.667 33.91 23.58 43.78 3.51
2620 3704 2.930562 AGGTCAGGTGGCCACTCC 60.931 66.667 33.91 27.09 43.78 3.85
2621 3705 4.035102 GGTCAGGTGGCCACTCCC 62.035 72.222 33.91 23.06 40.23 4.30
2622 3706 4.394712 GTCAGGTGGCCACTCCCG 62.395 72.222 33.91 19.57 0.00 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.362677 AGTGTAGTAGGATCACCACCAAT 58.637 43.478 0.00 0.00 38.94 3.16
37 38 8.662781 TGCCTTTAATGCTATAGAAAGTGTAG 57.337 34.615 3.21 0.00 0.00 2.74
78 79 5.728637 AAAATGGGAGGTAGCTTTTTGAG 57.271 39.130 0.00 0.00 0.00 3.02
121 122 6.433093 GGGAGGTAGCTTTTTGAGTAATTCAA 59.567 38.462 0.00 0.00 43.92 2.69
122 123 5.944007 GGGAGGTAGCTTTTTGAGTAATTCA 59.056 40.000 0.00 0.00 0.00 2.57
123 124 5.064834 CGGGAGGTAGCTTTTTGAGTAATTC 59.935 44.000 0.00 0.00 0.00 2.17
124 125 4.941873 CGGGAGGTAGCTTTTTGAGTAATT 59.058 41.667 0.00 0.00 0.00 1.40
125 126 4.019591 ACGGGAGGTAGCTTTTTGAGTAAT 60.020 41.667 0.00 0.00 0.00 1.89
126 127 3.325716 ACGGGAGGTAGCTTTTTGAGTAA 59.674 43.478 0.00 0.00 0.00 2.24
243 245 5.903010 AGGGGTGGTGAAAGTTTAAAAGATT 59.097 36.000 0.00 0.00 0.00 2.40
305 307 7.912056 TCATGTCTAGTTCTTCAATTTCAGG 57.088 36.000 0.00 0.00 0.00 3.86
335 337 8.627428 GCAAGTAGTAATTTTTGTTTTAGCTCG 58.373 33.333 0.00 0.00 0.00 5.03
337 339 9.463443 CAGCAAGTAGTAATTTTTGTTTTAGCT 57.537 29.630 0.00 0.00 0.00 3.32
338 340 8.214472 GCAGCAAGTAGTAATTTTTGTTTTAGC 58.786 33.333 0.00 0.00 0.00 3.09
339 341 9.243637 TGCAGCAAGTAGTAATTTTTGTTTTAG 57.756 29.630 0.00 0.00 0.00 1.85
340 342 9.587772 TTGCAGCAAGTAGTAATTTTTGTTTTA 57.412 25.926 2.83 0.00 0.00 1.52
344 346 8.661352 AAATTGCAGCAAGTAGTAATTTTTGT 57.339 26.923 14.47 0.00 36.92 2.83
351 353 6.475076 CACACAAAAATTGCAGCAAGTAGTAA 59.525 34.615 14.47 0.00 0.00 2.24
366 368 8.539770 TCATAAAAACACACACACACAAAAAT 57.460 26.923 0.00 0.00 0.00 1.82
372 374 8.795786 ATAACATCATAAAAACACACACACAC 57.204 30.769 0.00 0.00 0.00 3.82
373 375 9.242477 CAATAACATCATAAAAACACACACACA 57.758 29.630 0.00 0.00 0.00 3.72
374 376 9.457110 TCAATAACATCATAAAAACACACACAC 57.543 29.630 0.00 0.00 0.00 3.82
451 453 2.346766 TTTCTGAACAAGGCTGCAGA 57.653 45.000 20.43 5.78 35.74 4.26
452 454 3.655276 ATTTTCTGAACAAGGCTGCAG 57.345 42.857 10.11 10.11 0.00 4.41
480 1326 9.681062 TTTCCTTTCTTTGGTAATACTCCTATG 57.319 33.333 0.00 0.00 0.00 2.23
484 1330 8.297426 CAGTTTTCCTTTCTTTGGTAATACTCC 58.703 37.037 0.00 0.00 0.00 3.85
485 1331 7.808381 GCAGTTTTCCTTTCTTTGGTAATACTC 59.192 37.037 0.00 0.00 0.00 2.59
487 1333 7.430441 TGCAGTTTTCCTTTCTTTGGTAATAC 58.570 34.615 0.00 0.00 0.00 1.89
488 1334 7.589958 TGCAGTTTTCCTTTCTTTGGTAATA 57.410 32.000 0.00 0.00 0.00 0.98
489 1335 6.478512 TGCAGTTTTCCTTTCTTTGGTAAT 57.521 33.333 0.00 0.00 0.00 1.89
491 1337 6.478512 AATGCAGTTTTCCTTTCTTTGGTA 57.521 33.333 0.00 0.00 0.00 3.25
492 1338 5.357742 AATGCAGTTTTCCTTTCTTTGGT 57.642 34.783 0.00 0.00 0.00 3.67
494 1340 6.536224 AGTGAAATGCAGTTTTCCTTTCTTTG 59.464 34.615 0.00 0.00 35.23 2.77
495 1341 6.643388 AGTGAAATGCAGTTTTCCTTTCTTT 58.357 32.000 0.00 0.00 35.23 2.52
496 1342 6.225981 AGTGAAATGCAGTTTTCCTTTCTT 57.774 33.333 0.00 0.00 35.23 2.52
499 1345 4.405358 TGGAGTGAAATGCAGTTTTCCTTT 59.595 37.500 19.65 3.83 35.23 3.11
502 1348 4.202151 ACTTGGAGTGAAATGCAGTTTTCC 60.202 41.667 15.03 15.03 35.23 3.13
535 1381 0.682852 CGGCAGATATTTCCGGGGTA 59.317 55.000 0.00 0.00 39.52 3.69
536 1382 1.052124 TCGGCAGATATTTCCGGGGT 61.052 55.000 0.00 0.00 43.10 4.95
542 1388 0.582005 GGCACGTCGGCAGATATTTC 59.418 55.000 0.00 0.00 40.76 2.17
782 1637 1.605058 CGGGATAAGGATCGGGCGAT 61.605 60.000 0.00 0.00 37.59 4.58
783 1638 2.273179 CGGGATAAGGATCGGGCGA 61.273 63.158 0.00 0.00 32.28 5.54
784 1639 2.261671 CGGGATAAGGATCGGGCG 59.738 66.667 0.00 0.00 32.28 6.13
950 1805 1.855338 GAACCGAACGGAACCGAAC 59.145 57.895 20.14 11.31 42.83 3.95
951 1806 1.661197 CGAACCGAACGGAACCGAA 60.661 57.895 20.14 0.00 42.83 4.30
952 1807 2.050168 CGAACCGAACGGAACCGA 60.050 61.111 20.14 0.00 42.83 4.69
957 1812 1.178534 ACCCTAACGAACCGAACGGA 61.179 55.000 20.14 0.00 38.96 4.69
1121 1983 2.913060 CGGATCGGGGGAGGAGAC 60.913 72.222 0.00 0.00 0.00 3.36
1151 2054 5.050490 CCACAGATCCACCTACGAATTTAG 58.950 45.833 0.00 0.00 0.00 1.85
1160 2074 2.038426 CACAACACCACAGATCCACCTA 59.962 50.000 0.00 0.00 0.00 3.08
1186 2100 1.141881 CGTCAGATCCAGGGTTCCG 59.858 63.158 0.00 0.00 0.00 4.30
1442 2395 3.068691 CCGCCTCCTCCTTCACGA 61.069 66.667 0.00 0.00 0.00 4.35
1634 2668 1.889573 GGATAACTGGCCAGCGAGC 60.890 63.158 33.06 22.23 0.00 5.03
1688 2723 1.591863 GGGAGGCGAGCGATAACAC 60.592 63.158 0.00 0.00 0.00 3.32
1702 2737 2.613474 CGAGATCTAGGGTACTCGGGAG 60.613 59.091 15.38 0.00 45.22 4.30
1808 2853 9.245962 CTCTGATTTTTCATTTCATTCATAGCC 57.754 33.333 0.00 0.00 0.00 3.93
1851 2910 2.983433 CTTCCGCGAGAAGCATCAT 58.017 52.632 19.55 0.00 45.38 2.45
1863 2922 1.477105 GAACAAACTTGCACTTCCGC 58.523 50.000 0.00 0.00 0.00 5.54
1872 2931 7.290118 CACAAACAGAAAAAGGAACAAACTTG 58.710 34.615 0.00 0.00 0.00 3.16
1910 2970 1.419381 TATCATCCAGCGGCAAGGTA 58.581 50.000 1.45 0.00 0.00 3.08
1911 2971 0.767375 ATATCATCCAGCGGCAAGGT 59.233 50.000 1.45 0.00 0.00 3.50
1919 2996 3.378339 GTGCAGCAAAATATCATCCAGC 58.622 45.455 0.00 0.00 0.00 4.85
1951 3028 2.030007 ACCGAATCTGCACCAAAACATG 60.030 45.455 0.00 0.00 0.00 3.21
1952 3029 2.238521 ACCGAATCTGCACCAAAACAT 58.761 42.857 0.00 0.00 0.00 2.71
1953 3030 1.686355 ACCGAATCTGCACCAAAACA 58.314 45.000 0.00 0.00 0.00 2.83
1954 3031 2.414161 GCTACCGAATCTGCACCAAAAC 60.414 50.000 0.00 0.00 0.00 2.43
1969 3049 0.393077 ATCGAATTCAGGGGCTACCG 59.607 55.000 6.22 0.00 46.96 4.02
1970 3050 2.222027 CAATCGAATTCAGGGGCTACC 58.778 52.381 6.22 0.00 40.67 3.18
2002 3082 1.398390 CATTAACAAGGAGGAGCACGC 59.602 52.381 0.00 0.00 0.00 5.34
2014 3094 7.604657 AAACAATACTGGGGAACATTAACAA 57.395 32.000 0.00 0.00 0.00 2.83
2019 3099 9.100197 AGAATTTAAACAATACTGGGGAACATT 57.900 29.630 0.00 0.00 0.00 2.71
2040 3123 4.154195 CGGGAAACATGAACGAAGAGAATT 59.846 41.667 0.00 0.00 0.00 2.17
2058 3141 3.639094 ACATCCAACAACAAATTCGGGAA 59.361 39.130 0.00 0.00 0.00 3.97
2060 3143 3.658757 ACATCCAACAACAAATTCGGG 57.341 42.857 0.00 0.00 0.00 5.14
2061 3144 5.339990 GGATACATCCAACAACAAATTCGG 58.660 41.667 3.26 0.00 46.38 4.30
2081 3164 7.538575 CCAAAATTTGTTAGATTCGTCTGGAT 58.461 34.615 4.92 0.00 0.00 3.41
2089 3172 5.066968 TCCGGCCAAAATTTGTTAGATTC 57.933 39.130 2.24 0.00 0.00 2.52
2093 3176 2.560981 ACCTCCGGCCAAAATTTGTTAG 59.439 45.455 2.24 0.00 0.00 2.34
2104 3187 1.379309 GGCAAATTACCTCCGGCCA 60.379 57.895 2.24 0.00 41.02 5.36
2109 3192 0.817654 GGCACAGGCAAATTACCTCC 59.182 55.000 0.00 0.00 43.71 4.30
2110 3193 1.544724 TGGCACAGGCAAATTACCTC 58.455 50.000 0.00 0.00 43.71 3.85
2111 3194 3.763931 TGGCACAGGCAAATTACCT 57.236 47.368 0.00 0.00 43.71 3.08
2125 3208 2.668632 GGTGGACGGAAGATGGCA 59.331 61.111 0.00 0.00 0.00 4.92
2126 3209 2.124695 GGGTGGACGGAAGATGGC 60.125 66.667 0.00 0.00 0.00 4.40
2127 3210 1.562672 AAGGGGTGGACGGAAGATGG 61.563 60.000 0.00 0.00 0.00 3.51
2129 3212 1.272554 GGAAGGGGTGGACGGAAGAT 61.273 60.000 0.00 0.00 0.00 2.40
2130 3213 1.916777 GGAAGGGGTGGACGGAAGA 60.917 63.158 0.00 0.00 0.00 2.87
2132 3215 2.122324 TGGAAGGGGTGGACGGAA 60.122 61.111 0.00 0.00 0.00 4.30
2133 3216 2.471084 ATCTGGAAGGGGTGGACGGA 62.471 60.000 0.00 0.00 0.00 4.69
2134 3217 1.562672 AATCTGGAAGGGGTGGACGG 61.563 60.000 0.00 0.00 0.00 4.79
2135 3218 0.107654 GAATCTGGAAGGGGTGGACG 60.108 60.000 0.00 0.00 0.00 4.79
2137 3220 1.203428 TCTGAATCTGGAAGGGGTGGA 60.203 52.381 0.00 0.00 0.00 4.02
2138 3221 1.211457 CTCTGAATCTGGAAGGGGTGG 59.789 57.143 0.00 0.00 0.00 4.61
2140 3223 0.915364 GCTCTGAATCTGGAAGGGGT 59.085 55.000 0.00 0.00 0.00 4.95
2141 3224 0.914644 TGCTCTGAATCTGGAAGGGG 59.085 55.000 0.00 0.00 0.00 4.79
2142 3225 2.795231 TTGCTCTGAATCTGGAAGGG 57.205 50.000 0.00 0.00 0.00 3.95
2144 3227 5.640189 ACATTTTGCTCTGAATCTGGAAG 57.360 39.130 0.00 0.00 0.00 3.46
2145 3228 6.942005 TCTAACATTTTGCTCTGAATCTGGAA 59.058 34.615 0.00 0.00 0.00 3.53
2146 3229 6.475504 TCTAACATTTTGCTCTGAATCTGGA 58.524 36.000 0.00 0.00 0.00 3.86
2147 3230 6.748333 TCTAACATTTTGCTCTGAATCTGG 57.252 37.500 0.00 0.00 0.00 3.86
2148 3231 9.286946 GAAATCTAACATTTTGCTCTGAATCTG 57.713 33.333 0.00 0.00 0.00 2.90
2149 3232 9.240734 AGAAATCTAACATTTTGCTCTGAATCT 57.759 29.630 0.00 0.00 0.00 2.40
2150 3233 9.852091 AAGAAATCTAACATTTTGCTCTGAATC 57.148 29.630 0.00 0.00 0.00 2.52
2152 3235 7.596248 GCAAGAAATCTAACATTTTGCTCTGAA 59.404 33.333 0.00 0.00 0.00 3.02
2154 3237 6.033196 CGCAAGAAATCTAACATTTTGCTCTG 59.967 38.462 5.01 0.00 43.02 3.35
2156 3239 6.310020 CGCAAGAAATCTAACATTTTGCTC 57.690 37.500 5.01 0.00 43.02 4.26
2174 3257 3.252215 TCAATTAAACCCTGTGTCGCAAG 59.748 43.478 0.00 0.00 0.00 4.01
2175 3258 3.215151 TCAATTAAACCCTGTGTCGCAA 58.785 40.909 0.00 0.00 0.00 4.85
2176 3259 2.852449 TCAATTAAACCCTGTGTCGCA 58.148 42.857 0.00 0.00 0.00 5.10
2177 3260 4.412207 GAATCAATTAAACCCTGTGTCGC 58.588 43.478 0.00 0.00 0.00 5.19
2178 3261 4.153475 ACGAATCAATTAAACCCTGTGTCG 59.847 41.667 0.00 0.00 0.00 4.35
2179 3262 5.048991 ACACGAATCAATTAAACCCTGTGTC 60.049 40.000 0.00 0.00 31.82 3.67
2180 3263 4.825085 ACACGAATCAATTAAACCCTGTGT 59.175 37.500 0.00 0.00 32.49 3.72
2181 3264 5.371115 ACACGAATCAATTAAACCCTGTG 57.629 39.130 0.00 0.00 0.00 3.66
2182 3265 6.183360 ACAAACACGAATCAATTAAACCCTGT 60.183 34.615 0.00 0.00 0.00 4.00
2183 3266 6.143758 CACAAACACGAATCAATTAAACCCTG 59.856 38.462 0.00 0.00 0.00 4.45
2184 3267 6.212955 CACAAACACGAATCAATTAAACCCT 58.787 36.000 0.00 0.00 0.00 4.34
2185 3268 5.107645 GCACAAACACGAATCAATTAAACCC 60.108 40.000 0.00 0.00 0.00 4.11
2186 3269 5.386933 CGCACAAACACGAATCAATTAAACC 60.387 40.000 0.00 0.00 0.00 3.27
2187 3270 5.172411 ACGCACAAACACGAATCAATTAAAC 59.828 36.000 0.00 0.00 0.00 2.01
2188 3271 5.172232 CACGCACAAACACGAATCAATTAAA 59.828 36.000 0.00 0.00 0.00 1.52
2189 3272 4.672862 CACGCACAAACACGAATCAATTAA 59.327 37.500 0.00 0.00 0.00 1.40
2190 3273 4.215201 CACGCACAAACACGAATCAATTA 58.785 39.130 0.00 0.00 0.00 1.40
2191 3274 3.042189 CACGCACAAACACGAATCAATT 58.958 40.909 0.00 0.00 0.00 2.32
2192 3275 2.032799 ACACGCACAAACACGAATCAAT 59.967 40.909 0.00 0.00 0.00 2.57
2193 3276 1.398739 ACACGCACAAACACGAATCAA 59.601 42.857 0.00 0.00 0.00 2.57
2194 3277 1.004398 GACACGCACAAACACGAATCA 60.004 47.619 0.00 0.00 0.00 2.57
2195 3278 1.260561 AGACACGCACAAACACGAATC 59.739 47.619 0.00 0.00 0.00 2.52
2196 3279 1.003972 CAGACACGCACAAACACGAAT 60.004 47.619 0.00 0.00 0.00 3.34
2197 3280 0.371989 CAGACACGCACAAACACGAA 59.628 50.000 0.00 0.00 0.00 3.85
2198 3281 0.738063 ACAGACACGCACAAACACGA 60.738 50.000 0.00 0.00 0.00 4.35
2199 3282 0.096281 AACAGACACGCACAAACACG 59.904 50.000 0.00 0.00 0.00 4.49
2200 3283 1.910819 CAAACAGACACGCACAAACAC 59.089 47.619 0.00 0.00 0.00 3.32
2201 3284 1.537638 ACAAACAGACACGCACAAACA 59.462 42.857 0.00 0.00 0.00 2.83
2202 3285 1.910819 CACAAACAGACACGCACAAAC 59.089 47.619 0.00 0.00 0.00 2.93
2203 3286 1.537638 ACACAAACAGACACGCACAAA 59.462 42.857 0.00 0.00 0.00 2.83
2204 3287 1.160989 ACACAAACAGACACGCACAA 58.839 45.000 0.00 0.00 0.00 3.33
2205 3288 1.160989 AACACAAACAGACACGCACA 58.839 45.000 0.00 0.00 0.00 4.57
2206 3289 2.256445 AAACACAAACAGACACGCAC 57.744 45.000 0.00 0.00 0.00 5.34
2207 3290 2.999507 AAAACACAAACAGACACGCA 57.000 40.000 0.00 0.00 0.00 5.24
2208 3291 3.749404 TGTAAAACACAAACAGACACGC 58.251 40.909 0.00 0.00 32.95 5.34
2209 3292 6.939627 TCTATGTAAAACACAAACAGACACG 58.060 36.000 0.00 0.00 41.55 4.49
2210 3293 7.352739 CCTCTATGTAAAACACAAACAGACAC 58.647 38.462 0.00 0.00 41.55 3.67
2211 3294 6.485313 CCCTCTATGTAAAACACAAACAGACA 59.515 38.462 0.00 0.00 41.55 3.41
2212 3295 6.567891 GCCCTCTATGTAAAACACAAACAGAC 60.568 42.308 0.00 0.00 41.55 3.51
2213 3296 5.472137 GCCCTCTATGTAAAACACAAACAGA 59.528 40.000 0.00 0.00 41.55 3.41
2214 3297 5.240623 TGCCCTCTATGTAAAACACAAACAG 59.759 40.000 0.00 0.00 41.55 3.16
2215 3298 5.009210 GTGCCCTCTATGTAAAACACAAACA 59.991 40.000 0.00 0.00 41.55 2.83
2216 3299 5.009210 TGTGCCCTCTATGTAAAACACAAAC 59.991 40.000 0.00 0.00 41.55 2.93
2217 3300 5.009210 GTGTGCCCTCTATGTAAAACACAAA 59.991 40.000 0.00 0.00 41.55 2.83
2218 3301 4.517453 GTGTGCCCTCTATGTAAAACACAA 59.483 41.667 0.00 0.00 41.55 3.33
2219 3302 4.069304 GTGTGCCCTCTATGTAAAACACA 58.931 43.478 0.00 0.00 42.69 3.72
2220 3303 4.069304 TGTGTGCCCTCTATGTAAAACAC 58.931 43.478 0.00 0.00 37.71 3.32
2221 3304 4.359434 TGTGTGCCCTCTATGTAAAACA 57.641 40.909 0.00 0.00 0.00 2.83
2222 3305 4.941263 TCATGTGTGCCCTCTATGTAAAAC 59.059 41.667 0.00 0.00 0.00 2.43
2223 3306 5.172687 TCATGTGTGCCCTCTATGTAAAA 57.827 39.130 0.00 0.00 0.00 1.52
2224 3307 4.835284 TCATGTGTGCCCTCTATGTAAA 57.165 40.909 0.00 0.00 0.00 2.01
2225 3308 5.372343 AATCATGTGTGCCCTCTATGTAA 57.628 39.130 0.00 0.00 0.00 2.41
2226 3309 5.130975 AGAAATCATGTGTGCCCTCTATGTA 59.869 40.000 0.00 0.00 0.00 2.29
2227 3310 3.939740 AATCATGTGTGCCCTCTATGT 57.060 42.857 0.00 0.00 0.00 2.29
2228 3311 4.458397 AGAAATCATGTGTGCCCTCTATG 58.542 43.478 0.00 0.00 0.00 2.23
2229 3312 4.785346 AGAAATCATGTGTGCCCTCTAT 57.215 40.909 0.00 0.00 0.00 1.98
2230 3313 5.692115 TTAGAAATCATGTGTGCCCTCTA 57.308 39.130 0.00 0.00 0.00 2.43
2231 3314 4.574674 TTAGAAATCATGTGTGCCCTCT 57.425 40.909 0.00 0.00 0.00 3.69
2232 3315 5.357878 TCAATTAGAAATCATGTGTGCCCTC 59.642 40.000 0.00 0.00 0.00 4.30
2233 3316 5.263599 TCAATTAGAAATCATGTGTGCCCT 58.736 37.500 0.00 0.00 0.00 5.19
2234 3317 5.581126 TCAATTAGAAATCATGTGTGCCC 57.419 39.130 0.00 0.00 0.00 5.36
2235 3318 6.624423 ACTTCAATTAGAAATCATGTGTGCC 58.376 36.000 0.00 0.00 35.40 5.01
2236 3319 9.793252 AATACTTCAATTAGAAATCATGTGTGC 57.207 29.630 0.00 0.00 35.40 4.57
2282 3366 4.067896 CAAGGTTGCACTATGACTGAAGT 58.932 43.478 0.00 0.00 0.00 3.01
2288 3372 5.468746 TGACTAAACAAGGTTGCACTATGAC 59.531 40.000 0.00 0.00 0.00 3.06
2294 3378 4.275936 ACTGATGACTAAACAAGGTTGCAC 59.724 41.667 0.00 0.00 0.00 4.57
2295 3379 4.275689 CACTGATGACTAAACAAGGTTGCA 59.724 41.667 0.00 0.00 0.00 4.08
2302 3386 7.661027 TGATGTTGATCACTGATGACTAAACAA 59.339 33.333 0.00 0.00 37.84 2.83
2305 3389 7.614494 TCTGATGTTGATCACTGATGACTAAA 58.386 34.615 0.00 0.00 37.79 1.85
2334 3418 6.962182 TCCTTGTCCAAATAGTTGATCTGAT 58.038 36.000 4.10 0.00 36.83 2.90
2346 3430 2.097825 GAGCATGCTCCTTGTCCAAAT 58.902 47.619 33.31 1.20 37.11 2.32
2377 3461 3.070446 TGAGGTCCACGTATTCAAACACT 59.930 43.478 0.00 0.00 0.00 3.55
2378 3462 3.395639 TGAGGTCCACGTATTCAAACAC 58.604 45.455 0.00 0.00 0.00 3.32
2379 3463 3.755112 TGAGGTCCACGTATTCAAACA 57.245 42.857 0.00 0.00 0.00 2.83
2390 3474 3.133901 ACCCAACAAATTTTGAGGTCCAC 59.866 43.478 15.81 0.00 29.15 4.02
2392 3476 3.727726 CACCCAACAAATTTTGAGGTCC 58.272 45.455 15.81 0.00 31.45 4.46
2402 3486 6.194235 TCCAGATATTTAGCACCCAACAAAT 58.806 36.000 0.00 0.00 0.00 2.32
2406 3490 7.168219 TCATATCCAGATATTTAGCACCCAAC 58.832 38.462 0.00 0.00 31.98 3.77
2425 3509 8.442632 TGTCCATTTTCAAGTCATCTCATATC 57.557 34.615 0.00 0.00 0.00 1.63
2427 3511 7.884877 AGTTGTCCATTTTCAAGTCATCTCATA 59.115 33.333 0.00 0.00 0.00 2.15
2431 3515 6.147821 CGTAGTTGTCCATTTTCAAGTCATCT 59.852 38.462 0.00 0.00 0.00 2.90
2432 3516 6.147164 TCGTAGTTGTCCATTTTCAAGTCATC 59.853 38.462 0.00 0.00 0.00 2.92
2433 3517 5.995282 TCGTAGTTGTCCATTTTCAAGTCAT 59.005 36.000 0.00 0.00 0.00 3.06
2434 3518 5.235616 GTCGTAGTTGTCCATTTTCAAGTCA 59.764 40.000 0.00 0.00 0.00 3.41
2435 3519 5.465724 AGTCGTAGTTGTCCATTTTCAAGTC 59.534 40.000 0.00 0.00 0.00 3.01
2436 3520 5.236478 CAGTCGTAGTTGTCCATTTTCAAGT 59.764 40.000 0.00 0.00 0.00 3.16
2437 3521 5.334105 CCAGTCGTAGTTGTCCATTTTCAAG 60.334 44.000 0.00 0.00 0.00 3.02
2438 3522 4.513692 CCAGTCGTAGTTGTCCATTTTCAA 59.486 41.667 0.00 0.00 0.00 2.69
2439 3523 4.062293 CCAGTCGTAGTTGTCCATTTTCA 58.938 43.478 0.00 0.00 0.00 2.69
2440 3524 4.062991 ACCAGTCGTAGTTGTCCATTTTC 58.937 43.478 0.00 0.00 0.00 2.29
2441 3525 4.062991 GACCAGTCGTAGTTGTCCATTTT 58.937 43.478 0.00 0.00 0.00 1.82
2442 3526 3.556423 GGACCAGTCGTAGTTGTCCATTT 60.556 47.826 0.00 0.00 0.00 2.32
2443 3527 2.028385 GGACCAGTCGTAGTTGTCCATT 60.028 50.000 0.00 0.00 0.00 3.16
2444 3528 1.549170 GGACCAGTCGTAGTTGTCCAT 59.451 52.381 0.00 0.00 0.00 3.41
2445 3529 0.963962 GGACCAGTCGTAGTTGTCCA 59.036 55.000 0.00 0.00 0.00 4.02
2446 3530 0.963962 TGGACCAGTCGTAGTTGTCC 59.036 55.000 0.00 0.00 0.00 4.02
2447 3531 1.612463 ACTGGACCAGTCGTAGTTGTC 59.388 52.381 21.99 0.00 41.21 3.18
2448 3532 1.700955 ACTGGACCAGTCGTAGTTGT 58.299 50.000 21.99 0.00 41.21 3.32
2449 3533 2.413765 CGTACTGGACCAGTCGTAGTTG 60.414 54.545 30.43 9.81 41.21 3.16
2450 3534 1.808945 CGTACTGGACCAGTCGTAGTT 59.191 52.381 30.43 7.09 41.21 2.24
2451 3535 1.446907 CGTACTGGACCAGTCGTAGT 58.553 55.000 30.43 8.74 41.21 2.73
2452 3536 0.098376 GCGTACTGGACCAGTCGTAG 59.902 60.000 30.43 19.37 41.21 3.51
2453 3537 0.606130 TGCGTACTGGACCAGTCGTA 60.606 55.000 30.43 25.84 41.21 3.43
2454 3538 1.248785 ATGCGTACTGGACCAGTCGT 61.249 55.000 30.43 14.89 41.21 4.34
2455 3539 0.802222 CATGCGTACTGGACCAGTCG 60.802 60.000 30.43 28.81 41.21 4.18
2456 3540 0.530744 TCATGCGTACTGGACCAGTC 59.469 55.000 30.43 19.52 41.21 3.51
2458 3542 0.817654 TCTCATGCGTACTGGACCAG 59.182 55.000 20.45 20.45 37.52 4.00
2459 3543 0.817654 CTCTCATGCGTACTGGACCA 59.182 55.000 0.00 0.00 0.00 4.02
2460 3544 0.528684 GCTCTCATGCGTACTGGACC 60.529 60.000 0.00 0.00 0.00 4.46
2461 3545 0.457851 AGCTCTCATGCGTACTGGAC 59.542 55.000 0.00 0.00 38.13 4.02
2462 3546 0.741326 GAGCTCTCATGCGTACTGGA 59.259 55.000 6.43 0.00 38.13 3.86
2463 3547 0.457443 TGAGCTCTCATGCGTACTGG 59.543 55.000 16.19 0.00 38.13 4.00
2464 3548 1.923204 GTTGAGCTCTCATGCGTACTG 59.077 52.381 16.19 0.00 39.64 2.74
2465 3549 1.468224 CGTTGAGCTCTCATGCGTACT 60.468 52.381 16.19 0.00 39.64 2.73
2466 3550 0.917259 CGTTGAGCTCTCATGCGTAC 59.083 55.000 16.19 0.00 39.64 3.67
2467 3551 0.802222 GCGTTGAGCTCTCATGCGTA 60.802 55.000 16.19 0.00 44.04 4.42
2468 3552 2.097038 GCGTTGAGCTCTCATGCGT 61.097 57.895 16.19 0.00 44.04 5.24
2469 3553 2.699809 GCGTTGAGCTCTCATGCG 59.300 61.111 16.19 12.41 44.04 4.73
2479 3563 8.240883 AGTAAACATCTAAAGTAAGCGTTGAG 57.759 34.615 0.00 0.00 0.00 3.02
2480 3564 8.597662 AAGTAAACATCTAAAGTAAGCGTTGA 57.402 30.769 0.00 0.00 0.00 3.18
2481 3565 9.659830 AAAAGTAAACATCTAAAGTAAGCGTTG 57.340 29.630 0.00 0.00 0.00 4.10
2482 3566 9.659830 CAAAAGTAAACATCTAAAGTAAGCGTT 57.340 29.630 0.00 0.00 0.00 4.84
2483 3567 9.048446 TCAAAAGTAAACATCTAAAGTAAGCGT 57.952 29.630 0.00 0.00 0.00 5.07
2484 3568 9.530129 CTCAAAAGTAAACATCTAAAGTAAGCG 57.470 33.333 0.00 0.00 0.00 4.68
2497 3581 8.889717 CCTCAGTTTTACTCTCAAAAGTAAACA 58.110 33.333 8.35 0.31 46.24 2.83
2498 3582 8.343366 CCCTCAGTTTTACTCTCAAAAGTAAAC 58.657 37.037 8.35 0.00 46.24 2.01
2499 3583 8.050930 ACCCTCAGTTTTACTCTCAAAAGTAAA 58.949 33.333 5.39 5.39 45.41 2.01
2500 3584 7.497909 CACCCTCAGTTTTACTCTCAAAAGTAA 59.502 37.037 0.00 0.00 39.39 2.24
2501 3585 6.990349 CACCCTCAGTTTTACTCTCAAAAGTA 59.010 38.462 0.00 0.00 31.42 2.24
2502 3586 5.823045 CACCCTCAGTTTTACTCTCAAAAGT 59.177 40.000 0.00 0.00 32.50 2.66
2503 3587 5.239525 CCACCCTCAGTTTTACTCTCAAAAG 59.760 44.000 0.00 0.00 0.00 2.27
2504 3588 5.130350 CCACCCTCAGTTTTACTCTCAAAA 58.870 41.667 0.00 0.00 0.00 2.44
2505 3589 4.165372 ACCACCCTCAGTTTTACTCTCAAA 59.835 41.667 0.00 0.00 0.00 2.69
2506 3590 3.714798 ACCACCCTCAGTTTTACTCTCAA 59.285 43.478 0.00 0.00 0.00 3.02
2507 3591 3.314693 ACCACCCTCAGTTTTACTCTCA 58.685 45.455 0.00 0.00 0.00 3.27
2508 3592 3.614390 CGACCACCCTCAGTTTTACTCTC 60.614 52.174 0.00 0.00 0.00 3.20
2509 3593 2.299297 CGACCACCCTCAGTTTTACTCT 59.701 50.000 0.00 0.00 0.00 3.24
2510 3594 2.036862 ACGACCACCCTCAGTTTTACTC 59.963 50.000 0.00 0.00 0.00 2.59
2511 3595 2.044758 ACGACCACCCTCAGTTTTACT 58.955 47.619 0.00 0.00 0.00 2.24
2512 3596 2.538512 ACGACCACCCTCAGTTTTAC 57.461 50.000 0.00 0.00 0.00 2.01
2513 3597 3.233507 AGTACGACCACCCTCAGTTTTA 58.766 45.455 0.00 0.00 0.00 1.52
2514 3598 2.036862 GAGTACGACCACCCTCAGTTTT 59.963 50.000 0.00 0.00 0.00 2.43
2515 3599 1.617357 GAGTACGACCACCCTCAGTTT 59.383 52.381 0.00 0.00 0.00 2.66
2516 3600 1.203025 AGAGTACGACCACCCTCAGTT 60.203 52.381 0.00 0.00 0.00 3.16
2517 3601 0.404812 AGAGTACGACCACCCTCAGT 59.595 55.000 0.00 0.00 0.00 3.41
2518 3602 1.202582 CAAGAGTACGACCACCCTCAG 59.797 57.143 0.00 0.00 0.00 3.35
2519 3603 1.254026 CAAGAGTACGACCACCCTCA 58.746 55.000 0.00 0.00 0.00 3.86
2520 3604 0.108756 GCAAGAGTACGACCACCCTC 60.109 60.000 0.00 0.00 0.00 4.30
2521 3605 1.542187 GGCAAGAGTACGACCACCCT 61.542 60.000 0.00 0.00 0.00 4.34
2522 3606 1.079336 GGCAAGAGTACGACCACCC 60.079 63.158 0.00 0.00 0.00 4.61
2523 3607 0.669625 GTGGCAAGAGTACGACCACC 60.670 60.000 12.10 3.31 44.04 4.61
2524 3608 2.823628 GTGGCAAGAGTACGACCAC 58.176 57.895 9.10 9.10 43.57 4.16
2525 3609 1.669440 GGTGGCAAGAGTACGACCA 59.331 57.895 0.00 0.00 0.00 4.02
2526 3610 1.445582 CGGTGGCAAGAGTACGACC 60.446 63.158 0.00 0.00 0.00 4.79
2527 3611 0.731855 GACGGTGGCAAGAGTACGAC 60.732 60.000 0.00 0.00 0.00 4.34
2528 3612 0.892358 AGACGGTGGCAAGAGTACGA 60.892 55.000 0.00 0.00 0.00 3.43
2529 3613 0.456312 GAGACGGTGGCAAGAGTACG 60.456 60.000 0.00 0.00 0.00 3.67
2530 3614 0.108756 GGAGACGGTGGCAAGAGTAC 60.109 60.000 0.00 0.00 0.00 2.73
2531 3615 0.541063 TGGAGACGGTGGCAAGAGTA 60.541 55.000 0.00 0.00 0.00 2.59
2532 3616 1.837051 TGGAGACGGTGGCAAGAGT 60.837 57.895 0.00 0.00 0.00 3.24
2533 3617 1.374758 GTGGAGACGGTGGCAAGAG 60.375 63.158 0.00 0.00 0.00 2.85
2534 3618 2.741092 GTGGAGACGGTGGCAAGA 59.259 61.111 0.00 0.00 0.00 3.02
2535 3619 2.358737 GGTGGAGACGGTGGCAAG 60.359 66.667 0.00 0.00 0.00 4.01
2536 3620 4.308458 CGGTGGAGACGGTGGCAA 62.308 66.667 0.00 0.00 0.00 4.52
2544 3628 4.767255 CAGCTGGCCGGTGGAGAC 62.767 72.222 14.55 0.00 37.47 3.36
2575 3659 2.986306 AAGGGTGTAGGCGTCGACG 61.986 63.158 32.57 32.57 43.27 5.12
2576 3660 1.445582 CAAGGGTGTAGGCGTCGAC 60.446 63.158 5.18 5.18 0.00 4.20
2577 3661 1.604308 TCAAGGGTGTAGGCGTCGA 60.604 57.895 0.00 0.00 0.00 4.20
2578 3662 1.445582 GTCAAGGGTGTAGGCGTCG 60.446 63.158 0.00 0.00 0.00 5.12
2579 3663 1.445582 CGTCAAGGGTGTAGGCGTC 60.446 63.158 0.00 0.00 0.00 5.19
2580 3664 2.654877 CGTCAAGGGTGTAGGCGT 59.345 61.111 0.00 0.00 0.00 5.68
2581 3665 2.125673 CCGTCAAGGGTGTAGGCG 60.126 66.667 0.00 0.00 35.97 5.52
2590 3674 4.410400 GACCTGGCCCCGTCAAGG 62.410 72.222 13.12 8.52 40.63 3.61
2591 3675 3.612247 CTGACCTGGCCCCGTCAAG 62.612 68.421 19.36 11.69 38.48 3.02
2592 3676 3.636231 CTGACCTGGCCCCGTCAA 61.636 66.667 19.36 7.16 38.48 3.18
2601 3685 3.252284 AGTGGCCACCTGACCTGG 61.252 66.667 32.29 0.00 0.00 4.45
2602 3686 2.348998 GAGTGGCCACCTGACCTG 59.651 66.667 32.29 0.00 0.00 4.00
2603 3687 2.930562 GGAGTGGCCACCTGACCT 60.931 66.667 32.29 13.00 36.34 3.85
2604 3688 4.035102 GGGAGTGGCCACCTGACC 62.035 72.222 32.29 26.43 38.95 4.02
2605 3689 4.394712 CGGGAGTGGCCACCTGAC 62.395 72.222 32.29 19.72 38.95 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.