Multiple sequence alignment - TraesCS4D01G018000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G018000 chr4D 100.000 5043 0 0 1 5043 7848246 7843204 0.000000e+00 9313.0
1 TraesCS4D01G018000 chr4D 97.189 249 5 2 1 249 358383791 358384037 2.170000e-113 420.0
2 TraesCS4D01G018000 chr4D 97.531 243 5 1 1 243 30585998 30586239 1.010000e-111 414.0
3 TraesCS4D01G018000 chr4D 96.000 250 8 2 1 249 23427444 23427196 6.080000e-109 405.0
4 TraesCS4D01G018000 chr4D 85.185 162 16 4 2155 2312 7845991 7845834 5.230000e-35 159.0
5 TraesCS4D01G018000 chr4D 85.185 162 16 4 2256 2413 7846092 7845935 5.230000e-35 159.0
6 TraesCS4D01G018000 chr4D 95.946 74 3 0 3521 3594 7766557 7766630 2.470000e-23 121.0
7 TraesCS4D01G018000 chr4A 90.408 2304 120 28 2177 4430 595547263 595549515 0.000000e+00 2937.0
8 TraesCS4D01G018000 chr4A 94.392 1266 55 8 513 1771 595545328 595546584 0.000000e+00 1930.0
9 TraesCS4D01G018000 chr4A 92.058 277 19 2 244 520 595544874 595545147 2.200000e-103 387.0
10 TraesCS4D01G018000 chr4A 90.945 254 18 5 1746 1997 595546603 595546853 2.250000e-88 337.0
11 TraesCS4D01G018000 chr4A 90.411 146 9 3 4902 5043 595549890 595550034 2.400000e-43 187.0
12 TraesCS4D01G018000 chr4A 97.849 93 2 0 2088 2180 595546935 595547027 1.450000e-35 161.0
13 TraesCS4D01G018000 chr4A 85.185 162 16 4 2155 2312 595547342 595547499 5.230000e-35 159.0
14 TraesCS4D01G018000 chr4A 86.667 135 14 3 2279 2413 595547268 595547398 4.070000e-31 147.0
15 TraesCS4D01G018000 chr4A 92.553 94 7 0 4773 4866 595549794 595549887 8.810000e-28 135.0
16 TraesCS4D01G018000 chr4A 93.243 74 5 0 3521 3594 595824476 595824403 5.340000e-20 110.0
17 TraesCS4D01G018000 chr4B 90.227 2159 104 38 2375 4463 14106084 14108205 0.000000e+00 2719.0
18 TraesCS4D01G018000 chr4B 92.443 1588 89 20 369 1946 14103582 14105148 0.000000e+00 2239.0
19 TraesCS4D01G018000 chr4B 91.553 438 25 6 1868 2293 14105150 14105587 1.210000e-165 593.0
20 TraesCS4D01G018000 chr4B 88.509 322 21 6 4734 5043 14108865 14109182 4.770000e-100 375.0
21 TraesCS4D01G018000 chr4B 92.045 176 10 1 2218 2393 14105590 14105761 1.400000e-60 244.0
22 TraesCS4D01G018000 chr4B 91.463 164 10 3 354 517 14097479 14097638 6.570000e-54 222.0
23 TraesCS4D01G018000 chr4B 82.143 224 21 10 2155 2378 14105624 14105828 1.870000e-39 174.0
24 TraesCS4D01G018000 chr4B 86.567 134 10 2 2271 2400 14105464 14105593 1.890000e-29 141.0
25 TraesCS4D01G018000 chr7D 97.531 243 5 1 1 243 74632686 74632927 1.010000e-111 414.0
26 TraesCS4D01G018000 chr5D 97.531 243 5 1 1 243 466194285 466194044 1.010000e-111 414.0
27 TraesCS4D01G018000 chr5D 97.131 244 6 1 1 244 202920645 202920403 1.310000e-110 411.0
28 TraesCS4D01G018000 chr5D 97.131 244 5 2 1 243 294124717 294124959 1.310000e-110 411.0
29 TraesCS4D01G018000 chr1D 96.748 246 7 1 1 246 55881416 55881660 4.700000e-110 409.0
30 TraesCS4D01G018000 chr3D 94.636 261 12 2 1 260 164553140 164552881 2.190000e-108 403.0
31 TraesCS4D01G018000 chrUn 96.774 31 1 0 424 454 223353426 223353396 9.000000e-03 52.8
32 TraesCS4D01G018000 chrUn 100.000 28 0 0 424 451 397819330 397819357 9.000000e-03 52.8
33 TraesCS4D01G018000 chr3B 88.636 44 4 1 408 451 819569100 819569142 9.000000e-03 52.8
34 TraesCS4D01G018000 chr3B 100.000 28 0 0 424 451 819586450 819586477 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G018000 chr4D 7843204 7848246 5042 True 3210.333333 9313 90.123333 1 5043 3 chr4D.!!$R2 5042
1 TraesCS4D01G018000 chr4A 595544874 595550034 5160 False 708.888889 2937 91.163111 244 5043 9 chr4A.!!$F1 4799
2 TraesCS4D01G018000 chr4B 14103582 14109182 5600 False 926.428571 2719 89.069571 369 5043 7 chr4B.!!$F2 4674

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
165 166 0.037160 TCCCTTGTCCGCTTTAACCC 59.963 55.000 0.00 0.0 0.00 4.11 F
168 169 0.037734 CTTGTCCGCTTTAACCCCCT 59.962 55.000 0.00 0.0 0.00 4.79 F
289 290 0.105224 CACACTACCCCACGTCACAA 59.895 55.000 0.00 0.0 0.00 3.33 F
816 1011 0.329596 CTATAAGCCCAGGCCCATCC 59.670 60.000 4.70 0.0 43.17 3.51 F
1635 1837 0.973496 ACGGAGAGGAAGAGGAAGGC 60.973 60.000 0.00 0.0 0.00 4.35 F
3193 4218 1.202582 CTCCGCGGTCCTATAGAATGG 59.797 57.143 27.15 0.0 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1596 1798 1.135960 CCTCTTCATCTCCTTCCCCC 58.864 60.000 0.00 0.00 0.00 5.40 R
1608 1810 1.354705 TCTTCCTCTCCGTCCTCTTCA 59.645 52.381 0.00 0.00 0.00 3.02 R
2004 2337 1.382522 ACCACCAGAAGCGCAATATG 58.617 50.000 11.47 5.41 0.00 1.78 R
2681 3676 1.964223 ACAGACAAGGCGAGAAGAGAA 59.036 47.619 0.00 0.00 0.00 2.87 R
3409 4437 0.689080 AGGCCGTCATCCATGAGACT 60.689 55.000 0.00 0.00 37.51 3.24 R
4361 5426 0.033504 TTGCAACAGTCGTCCTCTCC 59.966 55.000 0.00 0.00 0.00 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.526304 CGGTTCAAGGACAAGAGACA 57.474 50.000 0.00 0.00 0.00 3.41
20 21 2.833794 CGGTTCAAGGACAAGAGACAA 58.166 47.619 0.00 0.00 0.00 3.18
21 22 2.544267 CGGTTCAAGGACAAGAGACAAC 59.456 50.000 0.00 0.00 0.00 3.32
22 23 3.541632 GGTTCAAGGACAAGAGACAACA 58.458 45.455 0.00 0.00 0.00 3.33
23 24 3.945285 GGTTCAAGGACAAGAGACAACAA 59.055 43.478 0.00 0.00 0.00 2.83
24 25 4.201920 GGTTCAAGGACAAGAGACAACAAC 60.202 45.833 0.00 0.00 0.00 3.32
25 26 4.487714 TCAAGGACAAGAGACAACAACT 57.512 40.909 0.00 0.00 0.00 3.16
26 27 4.442706 TCAAGGACAAGAGACAACAACTC 58.557 43.478 0.00 0.00 34.95 3.01
27 28 4.081142 TCAAGGACAAGAGACAACAACTCA 60.081 41.667 0.00 0.00 36.91 3.41
28 29 4.487714 AGGACAAGAGACAACAACTCAA 57.512 40.909 0.00 0.00 36.91 3.02
29 30 4.446371 AGGACAAGAGACAACAACTCAAG 58.554 43.478 0.00 0.00 36.91 3.02
30 31 4.162320 AGGACAAGAGACAACAACTCAAGA 59.838 41.667 0.00 0.00 36.91 3.02
31 32 4.271291 GGACAAGAGACAACAACTCAAGAC 59.729 45.833 0.00 0.00 36.91 3.01
32 33 5.091261 ACAAGAGACAACAACTCAAGACT 57.909 39.130 0.00 0.00 36.91 3.24
33 34 5.112686 ACAAGAGACAACAACTCAAGACTC 58.887 41.667 0.00 0.00 36.91 3.36
34 35 5.111989 CAAGAGACAACAACTCAAGACTCA 58.888 41.667 0.00 0.00 36.91 3.41
35 36 4.942852 AGAGACAACAACTCAAGACTCAG 58.057 43.478 0.00 0.00 36.91 3.35
36 37 4.054671 GAGACAACAACTCAAGACTCAGG 58.945 47.826 0.00 0.00 34.87 3.86
37 38 2.545946 GACAACAACTCAAGACTCAGGC 59.454 50.000 0.00 0.00 0.00 4.85
38 39 2.092968 ACAACAACTCAAGACTCAGGCA 60.093 45.455 0.00 0.00 0.00 4.75
39 40 2.945008 CAACAACTCAAGACTCAGGCAA 59.055 45.455 0.00 0.00 0.00 4.52
40 41 3.281727 ACAACTCAAGACTCAGGCAAA 57.718 42.857 0.00 0.00 0.00 3.68
41 42 3.209410 ACAACTCAAGACTCAGGCAAAG 58.791 45.455 0.00 0.00 0.00 2.77
42 43 1.889545 ACTCAAGACTCAGGCAAAGC 58.110 50.000 0.00 0.00 0.00 3.51
43 44 0.795085 CTCAAGACTCAGGCAAAGCG 59.205 55.000 0.00 0.00 0.00 4.68
44 45 0.106708 TCAAGACTCAGGCAAAGCGT 59.893 50.000 0.00 0.00 0.00 5.07
45 46 1.343142 TCAAGACTCAGGCAAAGCGTA 59.657 47.619 0.00 0.00 0.00 4.42
46 47 2.028112 TCAAGACTCAGGCAAAGCGTAT 60.028 45.455 0.00 0.00 0.00 3.06
47 48 2.744202 CAAGACTCAGGCAAAGCGTATT 59.256 45.455 0.00 0.00 0.00 1.89
48 49 2.622436 AGACTCAGGCAAAGCGTATTC 58.378 47.619 0.00 0.00 0.00 1.75
49 50 1.324736 GACTCAGGCAAAGCGTATTCG 59.675 52.381 0.00 0.00 40.37 3.34
59 60 4.732106 CGTATTCGCTCCCTGGTC 57.268 61.111 0.00 0.00 0.00 4.02
60 61 1.813859 CGTATTCGCTCCCTGGTCA 59.186 57.895 0.00 0.00 0.00 4.02
61 62 0.389391 CGTATTCGCTCCCTGGTCAT 59.611 55.000 0.00 0.00 0.00 3.06
62 63 1.603172 CGTATTCGCTCCCTGGTCATC 60.603 57.143 0.00 0.00 0.00 2.92
63 64 0.673985 TATTCGCTCCCTGGTCATCG 59.326 55.000 0.00 0.00 0.00 3.84
64 65 1.043116 ATTCGCTCCCTGGTCATCGA 61.043 55.000 0.00 0.00 0.00 3.59
65 66 1.254975 TTCGCTCCCTGGTCATCGAA 61.255 55.000 0.00 0.00 34.22 3.71
66 67 1.218047 CGCTCCCTGGTCATCGAAA 59.782 57.895 0.00 0.00 0.00 3.46
67 68 1.084370 CGCTCCCTGGTCATCGAAAC 61.084 60.000 0.00 0.00 0.00 2.78
68 69 0.744771 GCTCCCTGGTCATCGAAACC 60.745 60.000 12.25 12.25 37.31 3.27
69 70 0.107654 CTCCCTGGTCATCGAAACCC 60.108 60.000 15.52 4.58 35.84 4.11
70 71 1.077716 CCCTGGTCATCGAAACCCC 60.078 63.158 15.52 2.94 35.84 4.95
71 72 1.682849 CCTGGTCATCGAAACCCCA 59.317 57.895 15.52 7.00 35.84 4.96
72 73 0.392998 CCTGGTCATCGAAACCCCAG 60.393 60.000 15.52 14.60 41.89 4.45
73 74 1.002624 TGGTCATCGAAACCCCAGC 60.003 57.895 15.52 0.00 35.84 4.85
74 75 1.002624 GGTCATCGAAACCCCAGCA 60.003 57.895 8.76 0.00 0.00 4.41
75 76 0.608035 GGTCATCGAAACCCCAGCAA 60.608 55.000 8.76 0.00 0.00 3.91
76 77 1.463674 GTCATCGAAACCCCAGCAAT 58.536 50.000 0.00 0.00 0.00 3.56
77 78 1.818674 GTCATCGAAACCCCAGCAATT 59.181 47.619 0.00 0.00 0.00 2.32
78 79 2.091541 TCATCGAAACCCCAGCAATTC 58.908 47.619 0.00 0.00 0.00 2.17
79 80 1.134946 CATCGAAACCCCAGCAATTCC 59.865 52.381 0.00 0.00 0.00 3.01
80 81 0.111446 TCGAAACCCCAGCAATTCCA 59.889 50.000 0.00 0.00 0.00 3.53
81 82 1.185315 CGAAACCCCAGCAATTCCAT 58.815 50.000 0.00 0.00 0.00 3.41
82 83 1.134946 CGAAACCCCAGCAATTCCATC 59.865 52.381 0.00 0.00 0.00 3.51
83 84 2.178580 GAAACCCCAGCAATTCCATCA 58.821 47.619 0.00 0.00 0.00 3.07
84 85 1.560505 AACCCCAGCAATTCCATCAC 58.439 50.000 0.00 0.00 0.00 3.06
85 86 0.409092 ACCCCAGCAATTCCATCACA 59.591 50.000 0.00 0.00 0.00 3.58
86 87 1.203162 ACCCCAGCAATTCCATCACAA 60.203 47.619 0.00 0.00 0.00 3.33
87 88 1.205417 CCCCAGCAATTCCATCACAAC 59.795 52.381 0.00 0.00 0.00 3.32
88 89 2.173519 CCCAGCAATTCCATCACAACT 58.826 47.619 0.00 0.00 0.00 3.16
89 90 3.355378 CCCAGCAATTCCATCACAACTA 58.645 45.455 0.00 0.00 0.00 2.24
90 91 3.379372 CCCAGCAATTCCATCACAACTAG 59.621 47.826 0.00 0.00 0.00 2.57
91 92 4.264253 CCAGCAATTCCATCACAACTAGA 58.736 43.478 0.00 0.00 0.00 2.43
92 93 4.885907 CCAGCAATTCCATCACAACTAGAT 59.114 41.667 0.00 0.00 0.00 1.98
93 94 5.220989 CCAGCAATTCCATCACAACTAGATG 60.221 44.000 0.00 0.00 41.91 2.90
94 95 5.356190 CAGCAATTCCATCACAACTAGATGT 59.644 40.000 0.00 0.00 40.93 3.06
95 96 6.539826 CAGCAATTCCATCACAACTAGATGTA 59.460 38.462 5.20 0.00 40.93 2.29
96 97 6.765036 AGCAATTCCATCACAACTAGATGTAG 59.235 38.462 5.20 0.00 40.93 2.74
97 98 6.017605 GCAATTCCATCACAACTAGATGTAGG 60.018 42.308 5.20 8.39 40.93 3.18
98 99 4.672587 TCCATCACAACTAGATGTAGGC 57.327 45.455 5.20 0.00 40.93 3.93
99 100 4.290093 TCCATCACAACTAGATGTAGGCT 58.710 43.478 5.20 0.00 40.93 4.58
100 101 4.716784 TCCATCACAACTAGATGTAGGCTT 59.283 41.667 5.20 0.00 40.93 4.35
101 102 5.189736 TCCATCACAACTAGATGTAGGCTTT 59.810 40.000 5.20 0.00 40.93 3.51
102 103 5.882557 CCATCACAACTAGATGTAGGCTTTT 59.117 40.000 5.20 0.00 40.93 2.27
103 104 7.047891 CCATCACAACTAGATGTAGGCTTTTA 58.952 38.462 5.20 0.00 40.93 1.52
104 105 7.011482 CCATCACAACTAGATGTAGGCTTTTAC 59.989 40.741 5.20 0.00 40.93 2.01
105 106 6.403878 TCACAACTAGATGTAGGCTTTTACC 58.596 40.000 5.20 0.00 30.84 2.85
106 107 6.212791 TCACAACTAGATGTAGGCTTTTACCT 59.787 38.462 5.20 0.00 44.31 3.08
107 108 6.879458 CACAACTAGATGTAGGCTTTTACCTT 59.121 38.462 5.20 0.00 41.50 3.50
108 109 7.064728 CACAACTAGATGTAGGCTTTTACCTTC 59.935 40.741 5.20 0.00 41.50 3.46
109 110 6.869206 ACTAGATGTAGGCTTTTACCTTCA 57.131 37.500 0.00 0.00 40.82 3.02
110 111 7.439108 ACTAGATGTAGGCTTTTACCTTCAT 57.561 36.000 0.00 2.74 46.84 2.57
113 114 4.546829 TGTAGGCTTTTACCTTCATCGT 57.453 40.909 0.00 0.00 41.50 3.73
114 115 5.664294 TGTAGGCTTTTACCTTCATCGTA 57.336 39.130 0.00 0.00 41.50 3.43
115 116 6.040209 TGTAGGCTTTTACCTTCATCGTAA 57.960 37.500 0.00 0.00 41.50 3.18
116 117 6.103997 TGTAGGCTTTTACCTTCATCGTAAG 58.896 40.000 0.00 0.00 41.50 2.34
121 122 4.878878 CCTTCATCGTAAGGGGCC 57.121 61.111 0.00 0.00 42.08 5.80
122 123 1.227556 CCTTCATCGTAAGGGGCCG 60.228 63.158 0.00 0.00 42.08 6.13
123 124 1.682451 CCTTCATCGTAAGGGGCCGA 61.682 60.000 0.00 0.00 42.08 5.54
124 125 0.177141 CTTCATCGTAAGGGGCCGAA 59.823 55.000 0.00 0.00 36.57 4.30
125 126 0.108041 TTCATCGTAAGGGGCCGAAC 60.108 55.000 0.00 0.00 36.57 3.95
126 127 0.974010 TCATCGTAAGGGGCCGAACT 60.974 55.000 0.00 0.00 36.57 3.01
127 128 0.748450 CATCGTAAGGGGCCGAACTA 59.252 55.000 0.00 0.00 36.57 2.24
128 129 1.038280 ATCGTAAGGGGCCGAACTAG 58.962 55.000 0.00 0.00 36.57 2.57
129 130 0.323725 TCGTAAGGGGCCGAACTAGT 60.324 55.000 0.00 0.00 38.47 2.57
130 131 1.064758 TCGTAAGGGGCCGAACTAGTA 60.065 52.381 0.00 0.00 38.47 1.82
131 132 1.959282 CGTAAGGGGCCGAACTAGTAT 59.041 52.381 0.00 0.00 0.00 2.12
132 133 3.149196 CGTAAGGGGCCGAACTAGTATA 58.851 50.000 0.00 0.00 0.00 1.47
133 134 3.569701 CGTAAGGGGCCGAACTAGTATAA 59.430 47.826 0.00 0.00 0.00 0.98
134 135 4.037923 CGTAAGGGGCCGAACTAGTATAAA 59.962 45.833 0.00 0.00 0.00 1.40
135 136 5.451798 CGTAAGGGGCCGAACTAGTATAAAA 60.452 44.000 0.00 0.00 0.00 1.52
136 137 4.412796 AGGGGCCGAACTAGTATAAAAC 57.587 45.455 0.00 0.00 0.00 2.43
137 138 4.035814 AGGGGCCGAACTAGTATAAAACT 58.964 43.478 0.00 0.00 42.62 2.66
138 139 4.100653 AGGGGCCGAACTAGTATAAAACTC 59.899 45.833 0.00 0.00 39.80 3.01
139 140 4.100653 GGGGCCGAACTAGTATAAAACTCT 59.899 45.833 0.00 0.00 39.80 3.24
140 141 5.396101 GGGGCCGAACTAGTATAAAACTCTT 60.396 44.000 0.00 0.00 39.80 2.85
141 142 6.111382 GGGCCGAACTAGTATAAAACTCTTT 58.889 40.000 0.00 0.00 39.80 2.52
142 143 6.596888 GGGCCGAACTAGTATAAAACTCTTTT 59.403 38.462 0.00 0.00 39.80 2.27
143 144 7.413767 GGGCCGAACTAGTATAAAACTCTTTTG 60.414 40.741 0.00 0.00 39.80 2.44
144 145 6.959871 GCCGAACTAGTATAAAACTCTTTTGC 59.040 38.462 0.00 0.00 39.80 3.68
145 146 7.171434 CCGAACTAGTATAAAACTCTTTTGCG 58.829 38.462 0.00 0.00 39.80 4.85
146 147 7.148689 CCGAACTAGTATAAAACTCTTTTGCGT 60.149 37.037 0.00 0.00 39.80 5.24
147 148 7.891723 CGAACTAGTATAAAACTCTTTTGCGTC 59.108 37.037 0.00 0.00 39.80 5.19
148 149 7.592439 ACTAGTATAAAACTCTTTTGCGTCC 57.408 36.000 0.00 0.00 39.80 4.79
149 150 5.874895 AGTATAAAACTCTTTTGCGTCCC 57.125 39.130 0.00 0.00 30.33 4.46
150 151 5.557866 AGTATAAAACTCTTTTGCGTCCCT 58.442 37.500 0.00 0.00 30.33 4.20
151 152 6.002082 AGTATAAAACTCTTTTGCGTCCCTT 58.998 36.000 0.00 0.00 30.33 3.95
152 153 3.436700 AAAACTCTTTTGCGTCCCTTG 57.563 42.857 0.00 0.00 0.00 3.61
153 154 2.052782 AACTCTTTTGCGTCCCTTGT 57.947 45.000 0.00 0.00 0.00 3.16
154 155 1.594331 ACTCTTTTGCGTCCCTTGTC 58.406 50.000 0.00 0.00 0.00 3.18
155 156 0.875059 CTCTTTTGCGTCCCTTGTCC 59.125 55.000 0.00 0.00 0.00 4.02
156 157 0.882927 TCTTTTGCGTCCCTTGTCCG 60.883 55.000 0.00 0.00 0.00 4.79
160 161 2.668550 GCGTCCCTTGTCCGCTTT 60.669 61.111 0.00 0.00 43.81 3.51
161 162 1.375013 GCGTCCCTTGTCCGCTTTA 60.375 57.895 0.00 0.00 43.81 1.85
162 163 0.952010 GCGTCCCTTGTCCGCTTTAA 60.952 55.000 0.00 0.00 43.81 1.52
163 164 0.794473 CGTCCCTTGTCCGCTTTAAC 59.206 55.000 0.00 0.00 0.00 2.01
164 165 1.162698 GTCCCTTGTCCGCTTTAACC 58.837 55.000 0.00 0.00 0.00 2.85
165 166 0.037160 TCCCTTGTCCGCTTTAACCC 59.963 55.000 0.00 0.00 0.00 4.11
166 167 0.963856 CCCTTGTCCGCTTTAACCCC 60.964 60.000 0.00 0.00 0.00 4.95
167 168 0.963856 CCTTGTCCGCTTTAACCCCC 60.964 60.000 0.00 0.00 0.00 5.40
168 169 0.037734 CTTGTCCGCTTTAACCCCCT 59.962 55.000 0.00 0.00 0.00 4.79
169 170 0.479378 TTGTCCGCTTTAACCCCCTT 59.521 50.000 0.00 0.00 0.00 3.95
170 171 0.479378 TGTCCGCTTTAACCCCCTTT 59.521 50.000 0.00 0.00 0.00 3.11
171 172 1.704070 TGTCCGCTTTAACCCCCTTTA 59.296 47.619 0.00 0.00 0.00 1.85
172 173 2.107901 TGTCCGCTTTAACCCCCTTTAA 59.892 45.455 0.00 0.00 0.00 1.52
173 174 2.751259 GTCCGCTTTAACCCCCTTTAAG 59.249 50.000 0.00 0.00 0.00 1.85
174 175 2.376181 TCCGCTTTAACCCCCTTTAAGT 59.624 45.455 0.00 0.00 0.00 2.24
175 176 3.159472 CCGCTTTAACCCCCTTTAAGTT 58.841 45.455 0.00 0.00 0.00 2.66
176 177 4.042684 TCCGCTTTAACCCCCTTTAAGTTA 59.957 41.667 0.00 0.00 0.00 2.24
177 178 4.766373 CCGCTTTAACCCCCTTTAAGTTAA 59.234 41.667 0.00 0.00 34.92 2.01
178 179 5.335897 CCGCTTTAACCCCCTTTAAGTTAAC 60.336 44.000 0.00 0.00 36.10 2.01
179 180 5.335897 CGCTTTAACCCCCTTTAAGTTAACC 60.336 44.000 0.88 0.00 36.10 2.85
180 181 5.047092 GCTTTAACCCCCTTTAAGTTAACCC 60.047 44.000 0.88 0.00 36.10 4.11
181 182 2.885135 ACCCCCTTTAAGTTAACCCG 57.115 50.000 0.88 0.00 0.00 5.28
182 183 2.065007 ACCCCCTTTAAGTTAACCCGT 58.935 47.619 0.88 0.00 0.00 5.28
183 184 3.255831 ACCCCCTTTAAGTTAACCCGTA 58.744 45.455 0.88 0.00 0.00 4.02
184 185 3.264193 ACCCCCTTTAAGTTAACCCGTAG 59.736 47.826 0.88 0.00 0.00 3.51
185 186 3.273434 CCCCTTTAAGTTAACCCGTAGC 58.727 50.000 0.88 0.00 0.00 3.58
186 187 2.931969 CCCTTTAAGTTAACCCGTAGCG 59.068 50.000 0.88 0.00 0.00 4.26
187 188 3.368323 CCCTTTAAGTTAACCCGTAGCGA 60.368 47.826 0.88 0.00 0.00 4.93
188 189 4.436332 CCTTTAAGTTAACCCGTAGCGAT 58.564 43.478 0.88 0.00 0.00 4.58
189 190 4.269363 CCTTTAAGTTAACCCGTAGCGATG 59.731 45.833 0.88 0.00 0.00 3.84
190 191 2.304751 AAGTTAACCCGTAGCGATGG 57.695 50.000 0.88 0.00 0.00 3.51
191 192 0.179092 AGTTAACCCGTAGCGATGGC 60.179 55.000 0.88 0.00 40.37 4.40
201 202 2.805546 GCGATGGCTCCACGACTA 59.194 61.111 12.62 0.00 35.83 2.59
202 203 1.141019 GCGATGGCTCCACGACTAA 59.859 57.895 12.62 0.00 35.83 2.24
203 204 0.872021 GCGATGGCTCCACGACTAAG 60.872 60.000 12.62 0.00 35.83 2.18
204 205 0.456221 CGATGGCTCCACGACTAAGT 59.544 55.000 0.00 0.00 0.00 2.24
205 206 1.534175 CGATGGCTCCACGACTAAGTC 60.534 57.143 0.00 0.00 0.00 3.01
206 207 0.824759 ATGGCTCCACGACTAAGTCC 59.175 55.000 0.00 0.00 0.00 3.85
207 208 0.251653 TGGCTCCACGACTAAGTCCT 60.252 55.000 0.00 0.00 0.00 3.85
208 209 0.896226 GGCTCCACGACTAAGTCCTT 59.104 55.000 0.00 0.00 0.00 3.36
209 210 1.275573 GGCTCCACGACTAAGTCCTTT 59.724 52.381 0.00 0.00 0.00 3.11
210 211 2.608268 GCTCCACGACTAAGTCCTTTC 58.392 52.381 0.00 0.00 0.00 2.62
211 212 2.231721 GCTCCACGACTAAGTCCTTTCT 59.768 50.000 0.00 0.00 0.00 2.52
212 213 3.673866 GCTCCACGACTAAGTCCTTTCTC 60.674 52.174 0.00 0.00 0.00 2.87
213 214 3.759618 CTCCACGACTAAGTCCTTTCTCT 59.240 47.826 0.00 0.00 0.00 3.10
214 215 4.914983 TCCACGACTAAGTCCTTTCTCTA 58.085 43.478 0.00 0.00 0.00 2.43
215 216 4.942483 TCCACGACTAAGTCCTTTCTCTAG 59.058 45.833 0.00 0.00 0.00 2.43
216 217 4.096682 CCACGACTAAGTCCTTTCTCTAGG 59.903 50.000 0.00 0.00 36.59 3.02
217 218 4.942483 CACGACTAAGTCCTTTCTCTAGGA 59.058 45.833 0.00 0.00 42.02 2.94
225 226 2.690497 TCCTTTCTCTAGGACATCTGCG 59.310 50.000 0.00 0.00 39.40 5.18
226 227 2.223923 CCTTTCTCTAGGACATCTGCGG 60.224 54.545 0.00 0.00 37.50 5.69
227 228 2.145397 TTCTCTAGGACATCTGCGGT 57.855 50.000 0.00 0.00 0.00 5.68
228 229 1.393603 TCTCTAGGACATCTGCGGTG 58.606 55.000 0.00 0.00 0.00 4.94
229 230 1.064685 TCTCTAGGACATCTGCGGTGA 60.065 52.381 0.00 0.00 0.00 4.02
230 231 1.066303 CTCTAGGACATCTGCGGTGAC 59.934 57.143 0.00 0.00 0.00 3.67
231 232 0.817654 CTAGGACATCTGCGGTGACA 59.182 55.000 0.00 0.00 0.00 3.58
232 233 1.204704 CTAGGACATCTGCGGTGACAA 59.795 52.381 0.00 0.00 0.00 3.18
233 234 0.396435 AGGACATCTGCGGTGACAAA 59.604 50.000 0.00 0.00 0.00 2.83
234 235 1.202758 AGGACATCTGCGGTGACAAAA 60.203 47.619 0.00 0.00 0.00 2.44
235 236 1.069227 GGACATCTGCGGTGACAAAAC 60.069 52.381 0.00 0.00 0.00 2.43
236 237 0.951558 ACATCTGCGGTGACAAAACC 59.048 50.000 0.00 0.00 36.82 3.27
237 238 0.950836 CATCTGCGGTGACAAAACCA 59.049 50.000 0.00 0.00 40.53 3.67
238 239 0.951558 ATCTGCGGTGACAAAACCAC 59.048 50.000 0.00 0.00 40.53 4.16
239 240 1.010125 CTGCGGTGACAAAACCACG 60.010 57.895 0.00 0.00 40.53 4.94
240 241 1.433053 CTGCGGTGACAAAACCACGA 61.433 55.000 0.00 0.00 40.53 4.35
241 242 1.010462 GCGGTGACAAAACCACGAC 60.010 57.895 0.00 0.00 40.53 4.34
242 243 1.707239 GCGGTGACAAAACCACGACA 61.707 55.000 0.00 0.00 40.53 4.35
263 264 8.995220 ACGACAAAAGTAGTCATAAAATTAGCA 58.005 29.630 0.00 0.00 35.77 3.49
289 290 0.105224 CACACTACCCCACGTCACAA 59.895 55.000 0.00 0.00 0.00 3.33
293 294 3.262405 ACACTACCCCACGTCACAATTAT 59.738 43.478 0.00 0.00 0.00 1.28
355 356 6.073548 CGGAATAACATCAAGAAGGTATGCTC 60.074 42.308 0.00 0.00 0.00 4.26
384 385 7.782897 TTTCTCTTGTATATCTCCATCCGAT 57.217 36.000 0.00 0.00 0.00 4.18
491 492 3.922171 AATCTCTCCGGAAAAGCAGAT 57.078 42.857 5.23 4.74 0.00 2.90
561 750 4.709886 TCGGAAAGTCTATGTGAGGAATCA 59.290 41.667 0.00 0.00 0.00 2.57
578 767 9.529325 TGAGGAATCACATATAACTAAAAGTCG 57.471 33.333 0.00 0.00 0.00 4.18
612 801 3.949754 TCACATACCTAAAGACGGATCGT 59.050 43.478 0.00 0.00 45.10 3.73
629 818 4.100498 GGATCGTACTATTTCCCCTTGTCA 59.900 45.833 0.00 0.00 0.00 3.58
639 828 7.783119 ACTATTTCCCCTTGTCAAAGTTTTACT 59.217 33.333 1.87 0.00 0.00 2.24
676 865 8.325282 GTCACGAGGTTTTTATTTTTCAAAAGG 58.675 33.333 0.00 0.00 0.00 3.11
737 929 1.961394 ACTCAACGCTCTGGTAGACAA 59.039 47.619 0.00 0.00 0.00 3.18
738 930 2.364324 ACTCAACGCTCTGGTAGACAAA 59.636 45.455 0.00 0.00 0.00 2.83
739 931 3.006967 ACTCAACGCTCTGGTAGACAAAT 59.993 43.478 0.00 0.00 0.00 2.32
740 932 3.325870 TCAACGCTCTGGTAGACAAATG 58.674 45.455 0.00 0.00 0.00 2.32
816 1011 0.329596 CTATAAGCCCAGGCCCATCC 59.670 60.000 4.70 0.00 43.17 3.51
824 1019 3.357952 AGGCCCATCCATTGCCCA 61.358 61.111 0.00 0.00 46.55 5.36
893 1089 1.377856 CCACACCACACACCACACA 60.378 57.895 0.00 0.00 0.00 3.72
905 1101 3.059188 CACACCACACAATTTCCGTACTC 60.059 47.826 0.00 0.00 0.00 2.59
918 1114 1.060622 GTACTCGTCTGCTCCGTCG 59.939 63.158 0.00 0.00 0.00 5.12
1605 1807 2.284405 GACGGTGAGGGGGAAGGA 60.284 66.667 0.00 0.00 0.00 3.36
1608 1810 1.383248 CGGTGAGGGGGAAGGAGAT 60.383 63.158 0.00 0.00 0.00 2.75
1635 1837 0.973496 ACGGAGAGGAAGAGGAAGGC 60.973 60.000 0.00 0.00 0.00 4.35
1677 1879 4.894622 AGGAAGAGGAAGGAGATGAAGAT 58.105 43.478 0.00 0.00 0.00 2.40
1717 1919 7.093727 ACGAGGTGAGATTTCTCTTCTAATTCA 60.094 37.037 8.91 0.00 43.25 2.57
1719 1921 8.961294 AGGTGAGATTTCTCTTCTAATTCATG 57.039 34.615 8.91 0.00 43.25 3.07
1721 1923 9.823647 GGTGAGATTTCTCTTCTAATTCATGTA 57.176 33.333 8.91 0.00 43.25 2.29
1725 1927 9.743057 AGATTTCTCTTCTAATTCATGTACTCG 57.257 33.333 0.00 0.00 0.00 4.18
1827 2071 7.095523 TGACAACTAGTTAAACGGTTAATGAGC 60.096 37.037 9.22 0.00 31.94 4.26
1949 2281 2.101783 TGTTAAGCCATGATGCCCTTG 58.898 47.619 0.00 0.00 0.00 3.61
1972 2305 4.669318 CAACCTCATTGCTTCATGTGATC 58.331 43.478 0.00 0.00 0.00 2.92
2017 2350 7.728847 TGTCATTTATACATATTGCGCTTCT 57.271 32.000 9.73 0.00 0.00 2.85
2044 2377 7.040961 GGTGGTATGTTGTGTTGTTAACTGTAT 60.041 37.037 7.22 0.00 0.00 2.29
2381 3028 9.375974 AGTGGTGTACTGGTATAATGTACATAT 57.624 33.333 9.21 6.00 45.13 1.78
2475 3463 8.567948 CCAAAAGGATAGTTGCATTATTATCGT 58.432 33.333 0.00 0.00 0.00 3.73
2596 3587 5.107375 GCTGTATTGTTTTCCAGTGCATTTG 60.107 40.000 0.00 0.00 0.00 2.32
2677 3672 4.101585 TCTGCAGTATGGTCCTAGGATTTG 59.898 45.833 16.27 8.48 35.86 2.32
2678 3673 3.142174 GCAGTATGGTCCTAGGATTTGC 58.858 50.000 16.27 14.07 35.86 3.68
2679 3674 3.181450 GCAGTATGGTCCTAGGATTTGCT 60.181 47.826 16.27 8.86 35.86 3.91
2680 3675 4.687219 GCAGTATGGTCCTAGGATTTGCTT 60.687 45.833 16.27 0.00 35.86 3.91
2681 3676 5.440610 CAGTATGGTCCTAGGATTTGCTTT 58.559 41.667 16.27 0.00 0.00 3.51
2824 3819 7.593273 TGTTTTGTGTGACTTACTTTCTTGTTG 59.407 33.333 0.00 0.00 0.00 3.33
2825 3820 6.811253 TTGTGTGACTTACTTTCTTGTTGT 57.189 33.333 0.00 0.00 0.00 3.32
2826 3821 6.417191 TGTGTGACTTACTTTCTTGTTGTC 57.583 37.500 0.00 0.00 0.00 3.18
2827 3822 6.170506 TGTGTGACTTACTTTCTTGTTGTCT 58.829 36.000 0.00 0.00 0.00 3.41
2908 3905 1.745232 TCAAGCAACCGAACAGTGTT 58.255 45.000 8.61 8.61 0.00 3.32
3012 4017 2.746362 CAGTTTTCAGCATCTCAGTCCC 59.254 50.000 0.00 0.00 0.00 4.46
3023 4028 4.330250 CATCTCAGTCCCTGAACACAATT 58.670 43.478 0.00 0.00 40.18 2.32
3027 4032 5.042463 TCAGTCCCTGAACACAATTACAA 57.958 39.130 0.00 0.00 37.57 2.41
3039 4044 9.299963 TGAACACAATTACAAACTGATCAAAAG 57.700 29.630 0.00 0.00 0.00 2.27
3077 4101 4.510167 AAGCTCCCTATTACAAGCACAT 57.490 40.909 0.00 0.00 37.22 3.21
3078 4102 5.630415 AAGCTCCCTATTACAAGCACATA 57.370 39.130 0.00 0.00 37.22 2.29
3186 4211 3.227276 CTGCCTCCGCGGTCCTAT 61.227 66.667 27.15 0.00 38.08 2.57
3193 4218 1.202582 CTCCGCGGTCCTATAGAATGG 59.797 57.143 27.15 0.00 0.00 3.16
3217 4242 6.183360 GGCCAATTGCTGTAGTAAGAAAGTAG 60.183 42.308 0.00 0.00 40.92 2.57
3254 4279 6.678900 GCATCAGTATGTTGGTGAAGGATTTC 60.679 42.308 0.00 0.00 36.35 2.17
3409 4437 2.175499 GGACATGAATCCCATCCCAGAA 59.825 50.000 0.00 0.00 31.94 3.02
3517 4545 9.288576 CTTACAATTTAGGATCTGATGGCAATA 57.711 33.333 0.00 0.00 0.00 1.90
3641 4669 6.782494 TGCATCTACCATGGTTCTTATAGAGA 59.218 38.462 25.38 17.08 0.00 3.10
3703 4731 0.536915 GGCTTCCCTGCATCCTCATC 60.537 60.000 0.00 0.00 34.04 2.92
3729 4758 3.189606 AGGTGACCCAGTAATCATCCAA 58.810 45.455 0.00 0.00 0.00 3.53
3737 4766 4.640201 CCCAGTAATCATCCAACGAACAAT 59.360 41.667 0.00 0.00 0.00 2.71
3746 4775 7.372451 TCATCCAACGAACAATAACCTAAAG 57.628 36.000 0.00 0.00 0.00 1.85
3795 4824 8.723311 TGCGCACCCTAATTAATTGTATAATAC 58.277 33.333 5.66 0.00 0.00 1.89
3818 4847 0.108377 TACACACTACATGCTGCCCG 60.108 55.000 0.00 0.00 0.00 6.13
3832 4861 0.104855 TGCCCGCTGCTCTATACTTG 59.895 55.000 0.00 0.00 42.00 3.16
3852 4881 5.485708 ACTTGTCTCCTAGCTAGTCCAATTT 59.514 40.000 19.31 4.42 0.00 1.82
3853 4882 6.013293 ACTTGTCTCCTAGCTAGTCCAATTTT 60.013 38.462 19.31 0.00 0.00 1.82
4035 5073 2.106683 GGGACAATGAAGACGGCGG 61.107 63.158 13.24 0.00 0.00 6.13
4085 5123 2.251642 GGGTTCGTCTTTGCACGCT 61.252 57.895 0.00 0.00 39.74 5.07
4168 5210 3.057245 GTGCAAGGATTTTCTGGGAGTTC 60.057 47.826 0.00 0.00 0.00 3.01
4188 5230 7.284919 AGTTCCCAAATTTTATTCAAGACGT 57.715 32.000 0.00 0.00 0.00 4.34
4200 5244 1.689582 AAGACGTGGGGGATCCTCC 60.690 63.158 25.38 25.38 36.20 4.30
4228 5272 4.219070 TGCTCCTTCATGTGAAATTTCTGG 59.781 41.667 18.64 9.33 33.07 3.86
4229 5273 4.219288 GCTCCTTCATGTGAAATTTCTGGT 59.781 41.667 18.64 2.34 33.07 4.00
4230 5274 5.415701 GCTCCTTCATGTGAAATTTCTGGTA 59.584 40.000 18.64 3.69 33.07 3.25
4263 5307 2.492090 GCGCTGACTCGGATCACT 59.508 61.111 0.00 0.00 0.00 3.41
4281 5337 3.580022 TCACTGTCTGTCTTCATCATGGT 59.420 43.478 0.00 0.00 0.00 3.55
4299 5359 7.074653 TCATGGTTGTAAAAGAAGGTACTCT 57.925 36.000 0.00 0.00 38.49 3.24
4330 5390 1.481871 GTAGCTACACCTAGGGCACA 58.518 55.000 19.15 0.00 0.00 4.57
4338 5398 2.180276 CACCTAGGGCACAGTTAGAGT 58.820 52.381 14.81 0.00 0.00 3.24
4344 5404 2.772189 CACAGTTAGAGTGCGCGC 59.228 61.111 27.26 27.26 0.00 6.86
4361 5426 2.202770 CCAGCTCTCTCTGCAGCG 60.203 66.667 9.47 2.08 40.84 5.18
4372 5437 3.691744 CTGCAGCGGAGAGGACGAC 62.692 68.421 0.00 0.00 0.00 4.34
4379 5444 1.666011 GGAGAGGACGACTGTTGCA 59.334 57.895 0.00 0.00 0.00 4.08
4401 5466 1.072806 ACAGAGCAGATGCCAGTTTGA 59.927 47.619 0.14 0.00 43.38 2.69
4414 5479 2.422479 CCAGTTTGAGCCTGACATCATG 59.578 50.000 0.00 0.00 31.38 3.07
4430 5495 1.358787 TCATGGACTGAATTTGCCCCT 59.641 47.619 0.00 0.00 0.00 4.79
4432 5497 0.776810 TGGACTGAATTTGCCCCTCA 59.223 50.000 0.00 0.00 0.00 3.86
4433 5498 1.146774 TGGACTGAATTTGCCCCTCAA 59.853 47.619 0.00 0.00 0.00 3.02
4436 5501 3.554960 GGACTGAATTTGCCCCTCAAAAC 60.555 47.826 0.00 0.00 46.60 2.43
4437 5502 2.035832 ACTGAATTTGCCCCTCAAAACG 59.964 45.455 0.00 0.00 46.60 3.60
4494 5632 1.351017 TCTGCTAACCACTTTGAGGGG 59.649 52.381 0.00 0.00 46.86 4.79
4500 5638 3.346426 CCACTTTGAGGGGTCCTTG 57.654 57.895 0.00 0.00 32.85 3.61
4522 5661 0.606604 AAGTGGACGTGGAATAGCGT 59.393 50.000 0.00 0.00 44.50 5.07
4523 5662 0.606604 AGTGGACGTGGAATAGCGTT 59.393 50.000 0.00 0.00 41.70 4.84
4524 5663 0.997196 GTGGACGTGGAATAGCGTTC 59.003 55.000 0.00 0.00 41.70 3.95
4525 5664 0.604073 TGGACGTGGAATAGCGTTCA 59.396 50.000 0.00 0.00 43.36 3.18
4526 5665 1.001068 TGGACGTGGAATAGCGTTCAA 59.999 47.619 0.00 0.00 42.73 2.69
4527 5666 1.392510 GGACGTGGAATAGCGTTCAAC 59.607 52.381 0.00 5.12 41.70 3.18
4529 5668 2.066262 ACGTGGAATAGCGTTCAACAG 58.934 47.619 11.39 7.51 38.21 3.16
4530 5669 2.066262 CGTGGAATAGCGTTCAACAGT 58.934 47.619 11.39 0.00 0.00 3.55
4532 5671 2.159627 GTGGAATAGCGTTCAACAGTGG 59.840 50.000 7.33 0.00 0.00 4.00
4534 5673 1.130561 GAATAGCGTTCAACAGTGGGC 59.869 52.381 0.00 0.00 0.00 5.36
4535 5674 0.324943 ATAGCGTTCAACAGTGGGCT 59.675 50.000 0.00 0.00 33.07 5.19
4536 5675 0.107831 TAGCGTTCAACAGTGGGCTT 59.892 50.000 0.00 0.00 31.59 4.35
4537 5676 1.008538 GCGTTCAACAGTGGGCTTG 60.009 57.895 0.00 0.00 0.00 4.01
4538 5677 1.724582 GCGTTCAACAGTGGGCTTGT 61.725 55.000 0.00 0.00 0.00 3.16
4539 5678 0.029300 CGTTCAACAGTGGGCTTGTG 59.971 55.000 0.00 0.00 0.00 3.33
4541 5680 0.033601 TTCAACAGTGGGCTTGTGGT 60.034 50.000 0.00 0.00 0.00 4.16
4542 5681 0.840617 TCAACAGTGGGCTTGTGGTA 59.159 50.000 0.00 0.00 0.00 3.25
4543 5682 1.202758 TCAACAGTGGGCTTGTGGTAG 60.203 52.381 0.00 0.00 0.00 3.18
4573 5754 8.076781 TGAGAAACGAGCTCATAGTATATTGTC 58.923 37.037 15.40 4.37 37.46 3.18
4574 5755 7.941919 AGAAACGAGCTCATAGTATATTGTCA 58.058 34.615 15.40 0.00 0.00 3.58
4575 5756 8.580720 AGAAACGAGCTCATAGTATATTGTCAT 58.419 33.333 15.40 0.00 0.00 3.06
4576 5757 8.749841 AAACGAGCTCATAGTATATTGTCATC 57.250 34.615 15.40 0.00 0.00 2.92
4577 5758 6.857956 ACGAGCTCATAGTATATTGTCATCC 58.142 40.000 15.40 0.00 0.00 3.51
4578 5759 6.434340 ACGAGCTCATAGTATATTGTCATCCA 59.566 38.462 15.40 0.00 0.00 3.41
4579 5760 7.039714 ACGAGCTCATAGTATATTGTCATCCAA 60.040 37.037 15.40 0.00 37.49 3.53
4583 5766 7.388776 GCTCATAGTATATTGTCATCCAAAGCA 59.611 37.037 0.00 0.00 36.44 3.91
4584 5767 9.445878 CTCATAGTATATTGTCATCCAAAGCAT 57.554 33.333 0.00 0.00 36.44 3.79
4588 5771 6.713903 AGTATATTGTCATCCAAAGCATCCTG 59.286 38.462 0.00 0.00 36.44 3.86
4589 5772 3.438216 TTGTCATCCAAAGCATCCTGA 57.562 42.857 0.00 0.00 0.00 3.86
4599 5782 4.380233 CCAAAGCATCCTGACAACAATCTC 60.380 45.833 0.00 0.00 0.00 2.75
4600 5783 2.625737 AGCATCCTGACAACAATCTCG 58.374 47.619 0.00 0.00 0.00 4.04
4605 5788 3.210227 TCCTGACAACAATCTCGCAAAA 58.790 40.909 0.00 0.00 0.00 2.44
4609 5792 4.350346 TGACAACAATCTCGCAAAACTTG 58.650 39.130 0.00 0.00 0.00 3.16
4612 5795 3.253371 ACAATCTCGCAAAACTTGTCG 57.747 42.857 0.00 0.00 0.00 4.35
4613 5796 2.032030 ACAATCTCGCAAAACTTGTCGG 60.032 45.455 0.00 0.00 33.29 4.79
4620 5803 3.046390 CGCAAAACTTGTCGGCATAAAA 58.954 40.909 0.00 0.00 0.00 1.52
4623 5806 5.216648 GCAAAACTTGTCGGCATAAAAGTA 58.783 37.500 0.00 0.00 32.69 2.24
4625 5808 7.024768 GCAAAACTTGTCGGCATAAAAGTATA 58.975 34.615 0.00 0.00 32.69 1.47
4626 5809 7.700656 GCAAAACTTGTCGGCATAAAAGTATAT 59.299 33.333 0.00 0.00 32.69 0.86
4656 6118 7.506114 TGAGGAGAAAAGTTAGACTTGCTAAA 58.494 34.615 0.00 0.00 40.60 1.85
4723 6215 7.636259 TTTTGAAGCAAATCATAAACTTCGG 57.364 32.000 0.00 0.00 39.64 4.30
4724 6216 4.732784 TGAAGCAAATCATAAACTTCGGC 58.267 39.130 0.00 0.00 39.64 5.54
4725 6217 4.217334 TGAAGCAAATCATAAACTTCGGCA 59.783 37.500 0.00 0.00 39.64 5.69
4726 6218 4.096732 AGCAAATCATAAACTTCGGCAC 57.903 40.909 0.00 0.00 0.00 5.01
4727 6219 3.758554 AGCAAATCATAAACTTCGGCACT 59.241 39.130 0.00 0.00 0.00 4.40
4728 6220 4.941263 AGCAAATCATAAACTTCGGCACTA 59.059 37.500 0.00 0.00 0.00 2.74
4729 6221 5.065218 AGCAAATCATAAACTTCGGCACTAG 59.935 40.000 0.00 0.00 0.00 2.57
4730 6222 5.266242 CAAATCATAAACTTCGGCACTAGC 58.734 41.667 0.00 0.00 41.10 3.42
4756 6248 0.741915 GCGTTGGAGACCAAACCAAA 59.258 50.000 4.75 0.00 45.73 3.28
4757 6249 1.269051 GCGTTGGAGACCAAACCAAAG 60.269 52.381 4.75 0.00 45.73 2.77
4758 6250 1.269051 CGTTGGAGACCAAACCAAAGC 60.269 52.381 4.75 0.00 45.73 3.51
4759 6251 2.031870 GTTGGAGACCAAACCAAAGCT 58.968 47.619 4.75 0.00 45.73 3.74
4760 6252 1.691196 TGGAGACCAAACCAAAGCTG 58.309 50.000 0.00 0.00 32.93 4.24
4762 6254 1.322442 GAGACCAAACCAAAGCTGCT 58.678 50.000 0.00 0.00 0.00 4.24
4763 6255 1.000938 GAGACCAAACCAAAGCTGCTG 60.001 52.381 1.35 0.00 0.00 4.41
4764 6256 0.032540 GACCAAACCAAAGCTGCTGG 59.967 55.000 1.35 12.56 40.05 4.85
4779 6271 1.474478 TGCTGGTTTTTCTTTGCACGA 59.526 42.857 0.00 0.00 0.00 4.35
4905 6406 1.607756 AGCTCCAACTCCTGCTCGA 60.608 57.895 0.00 0.00 0.00 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.526304 TGTCTCTTGTCCTTGAACCG 57.474 50.000 0.00 0.00 0.00 4.44
1 2 3.541632 TGTTGTCTCTTGTCCTTGAACC 58.458 45.455 0.00 0.00 0.00 3.62
2 3 4.636206 AGTTGTTGTCTCTTGTCCTTGAAC 59.364 41.667 0.00 0.00 0.00 3.18
3 4 4.843728 AGTTGTTGTCTCTTGTCCTTGAA 58.156 39.130 0.00 0.00 0.00 2.69
4 5 4.081142 TGAGTTGTTGTCTCTTGTCCTTGA 60.081 41.667 0.00 0.00 33.59 3.02
5 6 4.191544 TGAGTTGTTGTCTCTTGTCCTTG 58.808 43.478 0.00 0.00 33.59 3.61
6 7 4.487714 TGAGTTGTTGTCTCTTGTCCTT 57.512 40.909 0.00 0.00 33.59 3.36
7 8 4.162320 TCTTGAGTTGTTGTCTCTTGTCCT 59.838 41.667 0.00 0.00 33.59 3.85
8 9 4.271291 GTCTTGAGTTGTTGTCTCTTGTCC 59.729 45.833 0.00 0.00 33.59 4.02
9 10 5.112686 AGTCTTGAGTTGTTGTCTCTTGTC 58.887 41.667 0.00 0.00 33.59 3.18
10 11 5.091261 AGTCTTGAGTTGTTGTCTCTTGT 57.909 39.130 0.00 0.00 33.59 3.16
11 12 5.111989 TGAGTCTTGAGTTGTTGTCTCTTG 58.888 41.667 0.00 0.00 33.59 3.02
12 13 5.344743 TGAGTCTTGAGTTGTTGTCTCTT 57.655 39.130 0.00 0.00 33.59 2.85
13 14 4.202202 CCTGAGTCTTGAGTTGTTGTCTCT 60.202 45.833 0.00 0.00 33.59 3.10
14 15 4.054671 CCTGAGTCTTGAGTTGTTGTCTC 58.945 47.826 0.00 0.00 0.00 3.36
15 16 3.742640 GCCTGAGTCTTGAGTTGTTGTCT 60.743 47.826 0.00 0.00 0.00 3.41
16 17 2.545946 GCCTGAGTCTTGAGTTGTTGTC 59.454 50.000 0.00 0.00 0.00 3.18
17 18 2.092968 TGCCTGAGTCTTGAGTTGTTGT 60.093 45.455 0.00 0.00 0.00 3.32
18 19 2.564771 TGCCTGAGTCTTGAGTTGTTG 58.435 47.619 0.00 0.00 0.00 3.33
19 20 3.281727 TTGCCTGAGTCTTGAGTTGTT 57.718 42.857 0.00 0.00 0.00 2.83
20 21 3.209410 CTTTGCCTGAGTCTTGAGTTGT 58.791 45.455 0.00 0.00 0.00 3.32
21 22 2.031333 GCTTTGCCTGAGTCTTGAGTTG 60.031 50.000 0.00 0.00 0.00 3.16
22 23 2.225467 GCTTTGCCTGAGTCTTGAGTT 58.775 47.619 0.00 0.00 0.00 3.01
23 24 1.875576 CGCTTTGCCTGAGTCTTGAGT 60.876 52.381 0.00 0.00 0.00 3.41
24 25 0.795085 CGCTTTGCCTGAGTCTTGAG 59.205 55.000 0.00 0.00 0.00 3.02
25 26 0.106708 ACGCTTTGCCTGAGTCTTGA 59.893 50.000 0.00 0.00 0.00 3.02
26 27 1.795768 TACGCTTTGCCTGAGTCTTG 58.204 50.000 0.00 0.00 0.00 3.02
27 28 2.770164 ATACGCTTTGCCTGAGTCTT 57.230 45.000 0.00 0.00 0.00 3.01
28 29 2.622436 GAATACGCTTTGCCTGAGTCT 58.378 47.619 0.00 0.00 0.00 3.24
29 30 1.324736 CGAATACGCTTTGCCTGAGTC 59.675 52.381 0.00 0.00 0.00 3.36
30 31 1.359848 CGAATACGCTTTGCCTGAGT 58.640 50.000 0.00 0.00 0.00 3.41
42 43 0.389391 ATGACCAGGGAGCGAATACG 59.611 55.000 0.00 0.00 42.93 3.06
43 44 1.603172 CGATGACCAGGGAGCGAATAC 60.603 57.143 0.00 0.00 0.00 1.89
44 45 0.673985 CGATGACCAGGGAGCGAATA 59.326 55.000 0.00 0.00 0.00 1.75
45 46 1.043116 TCGATGACCAGGGAGCGAAT 61.043 55.000 0.00 0.00 0.00 3.34
46 47 1.254975 TTCGATGACCAGGGAGCGAA 61.255 55.000 9.19 9.19 35.69 4.70
47 48 1.254975 TTTCGATGACCAGGGAGCGA 61.255 55.000 0.00 0.00 0.00 4.93
48 49 1.084370 GTTTCGATGACCAGGGAGCG 61.084 60.000 0.00 0.00 0.00 5.03
49 50 0.744771 GGTTTCGATGACCAGGGAGC 60.745 60.000 12.26 0.00 37.14 4.70
50 51 0.107654 GGGTTTCGATGACCAGGGAG 60.108 60.000 17.29 0.00 38.98 4.30
51 52 1.559065 GGGGTTTCGATGACCAGGGA 61.559 60.000 17.29 0.00 38.98 4.20
52 53 1.077716 GGGGTTTCGATGACCAGGG 60.078 63.158 17.29 0.00 38.98 4.45
53 54 0.392998 CTGGGGTTTCGATGACCAGG 60.393 60.000 17.29 5.82 43.80 4.45
54 55 3.159298 CTGGGGTTTCGATGACCAG 57.841 57.895 17.29 13.80 42.28 4.00
55 56 1.002624 GCTGGGGTTTCGATGACCA 60.003 57.895 17.29 9.00 38.98 4.02
56 57 0.608035 TTGCTGGGGTTTCGATGACC 60.608 55.000 9.40 9.40 36.41 4.02
57 58 1.463674 ATTGCTGGGGTTTCGATGAC 58.536 50.000 0.00 0.00 0.00 3.06
58 59 2.091541 GAATTGCTGGGGTTTCGATGA 58.908 47.619 0.00 0.00 0.00 2.92
59 60 1.134946 GGAATTGCTGGGGTTTCGATG 59.865 52.381 0.00 0.00 0.00 3.84
60 61 1.272425 TGGAATTGCTGGGGTTTCGAT 60.272 47.619 0.00 0.00 0.00 3.59
61 62 0.111446 TGGAATTGCTGGGGTTTCGA 59.889 50.000 0.00 0.00 0.00 3.71
62 63 1.134946 GATGGAATTGCTGGGGTTTCG 59.865 52.381 0.00 0.00 0.00 3.46
63 64 2.094026 GTGATGGAATTGCTGGGGTTTC 60.094 50.000 0.00 0.00 0.00 2.78
64 65 1.901833 GTGATGGAATTGCTGGGGTTT 59.098 47.619 0.00 0.00 0.00 3.27
65 66 1.203162 TGTGATGGAATTGCTGGGGTT 60.203 47.619 0.00 0.00 0.00 4.11
66 67 0.409092 TGTGATGGAATTGCTGGGGT 59.591 50.000 0.00 0.00 0.00 4.95
67 68 1.205417 GTTGTGATGGAATTGCTGGGG 59.795 52.381 0.00 0.00 0.00 4.96
68 69 2.173519 AGTTGTGATGGAATTGCTGGG 58.826 47.619 0.00 0.00 0.00 4.45
69 70 4.264253 TCTAGTTGTGATGGAATTGCTGG 58.736 43.478 0.00 0.00 0.00 4.85
70 71 5.356190 ACATCTAGTTGTGATGGAATTGCTG 59.644 40.000 5.64 0.00 43.88 4.41
71 72 5.503927 ACATCTAGTTGTGATGGAATTGCT 58.496 37.500 5.64 0.00 43.88 3.91
72 73 5.824904 ACATCTAGTTGTGATGGAATTGC 57.175 39.130 5.64 0.00 43.88 3.56
73 74 6.017605 GCCTACATCTAGTTGTGATGGAATTG 60.018 42.308 15.33 0.00 43.88 2.32
74 75 6.058183 GCCTACATCTAGTTGTGATGGAATT 58.942 40.000 15.33 0.00 43.88 2.17
75 76 5.367937 AGCCTACATCTAGTTGTGATGGAAT 59.632 40.000 15.33 6.01 43.88 3.01
76 77 4.716784 AGCCTACATCTAGTTGTGATGGAA 59.283 41.667 15.33 0.00 43.88 3.53
77 78 4.290093 AGCCTACATCTAGTTGTGATGGA 58.710 43.478 15.33 0.00 43.88 3.41
78 79 4.679373 AGCCTACATCTAGTTGTGATGG 57.321 45.455 15.33 14.27 43.88 3.51
79 80 6.992063 AAAAGCCTACATCTAGTTGTGATG 57.008 37.500 15.33 2.41 44.79 3.07
80 81 7.048512 GGTAAAAGCCTACATCTAGTTGTGAT 58.951 38.462 15.33 0.00 0.00 3.06
81 82 6.212791 AGGTAAAAGCCTACATCTAGTTGTGA 59.787 38.462 15.33 1.22 37.04 3.58
82 83 6.407202 AGGTAAAAGCCTACATCTAGTTGTG 58.593 40.000 15.33 6.57 37.04 3.33
83 84 6.622427 AGGTAAAAGCCTACATCTAGTTGT 57.378 37.500 11.11 11.11 37.04 3.32
84 85 7.103641 TGAAGGTAAAAGCCTACATCTAGTTG 58.896 38.462 0.00 0.00 38.03 3.16
85 86 7.253905 TGAAGGTAAAAGCCTACATCTAGTT 57.746 36.000 0.00 0.00 38.03 2.24
86 87 6.869206 TGAAGGTAAAAGCCTACATCTAGT 57.131 37.500 0.00 0.00 38.03 2.57
87 88 6.642950 CGATGAAGGTAAAAGCCTACATCTAG 59.357 42.308 0.00 0.00 38.03 2.43
88 89 6.097839 ACGATGAAGGTAAAAGCCTACATCTA 59.902 38.462 0.00 0.00 38.03 1.98
89 90 5.104900 ACGATGAAGGTAAAAGCCTACATCT 60.105 40.000 0.00 0.00 38.03 2.90
90 91 5.116882 ACGATGAAGGTAAAAGCCTACATC 58.883 41.667 0.00 0.00 38.03 3.06
91 92 5.099042 ACGATGAAGGTAAAAGCCTACAT 57.901 39.130 0.00 0.00 38.03 2.29
92 93 4.546829 ACGATGAAGGTAAAAGCCTACA 57.453 40.909 0.00 0.00 38.03 2.74
93 94 5.522824 CCTTACGATGAAGGTAAAAGCCTAC 59.477 44.000 0.00 0.00 41.09 3.18
94 95 5.395990 CCCTTACGATGAAGGTAAAAGCCTA 60.396 44.000 12.37 0.00 44.02 3.93
95 96 4.514401 CCTTACGATGAAGGTAAAAGCCT 58.486 43.478 0.00 0.00 41.09 4.58
96 97 3.626217 CCCTTACGATGAAGGTAAAAGCC 59.374 47.826 12.37 0.00 44.02 4.35
97 98 3.626217 CCCCTTACGATGAAGGTAAAAGC 59.374 47.826 12.37 0.00 44.02 3.51
98 99 3.626217 GCCCCTTACGATGAAGGTAAAAG 59.374 47.826 12.37 0.00 44.02 2.27
99 100 3.613030 GCCCCTTACGATGAAGGTAAAA 58.387 45.455 12.37 0.00 44.02 1.52
100 101 2.092807 GGCCCCTTACGATGAAGGTAAA 60.093 50.000 12.37 0.00 44.02 2.01
101 102 1.487558 GGCCCCTTACGATGAAGGTAA 59.512 52.381 12.37 0.00 44.02 2.85
102 103 1.125633 GGCCCCTTACGATGAAGGTA 58.874 55.000 12.37 0.00 44.02 3.08
103 104 1.912971 GGCCCCTTACGATGAAGGT 59.087 57.895 12.37 0.00 44.02 3.50
104 105 1.227556 CGGCCCCTTACGATGAAGG 60.228 63.158 0.00 8.09 44.96 3.46
105 106 0.177141 TTCGGCCCCTTACGATGAAG 59.823 55.000 0.00 0.00 39.06 3.02
106 107 0.108041 GTTCGGCCCCTTACGATGAA 60.108 55.000 0.00 0.00 39.06 2.57
107 108 0.974010 AGTTCGGCCCCTTACGATGA 60.974 55.000 0.00 0.00 39.06 2.92
108 109 0.748450 TAGTTCGGCCCCTTACGATG 59.252 55.000 0.00 0.00 39.06 3.84
109 110 1.038280 CTAGTTCGGCCCCTTACGAT 58.962 55.000 0.00 0.00 39.06 3.73
110 111 0.323725 ACTAGTTCGGCCCCTTACGA 60.324 55.000 0.00 0.00 37.33 3.43
111 112 1.392589 TACTAGTTCGGCCCCTTACG 58.607 55.000 0.00 0.00 0.00 3.18
112 113 5.535753 TTTATACTAGTTCGGCCCCTTAC 57.464 43.478 0.00 0.00 0.00 2.34
113 114 5.662657 AGTTTTATACTAGTTCGGCCCCTTA 59.337 40.000 0.00 0.00 34.56 2.69
114 115 4.472470 AGTTTTATACTAGTTCGGCCCCTT 59.528 41.667 0.00 0.00 34.56 3.95
115 116 4.035814 AGTTTTATACTAGTTCGGCCCCT 58.964 43.478 0.00 0.00 34.56 4.79
116 117 4.100653 AGAGTTTTATACTAGTTCGGCCCC 59.899 45.833 0.00 0.00 37.17 5.80
117 118 5.273674 AGAGTTTTATACTAGTTCGGCCC 57.726 43.478 0.00 0.00 37.17 5.80
118 119 7.461918 CAAAAGAGTTTTATACTAGTTCGGCC 58.538 38.462 0.00 0.00 37.17 6.13
119 120 6.959871 GCAAAAGAGTTTTATACTAGTTCGGC 59.040 38.462 0.00 0.00 37.17 5.54
120 121 7.148689 ACGCAAAAGAGTTTTATACTAGTTCGG 60.149 37.037 0.00 0.00 37.17 4.30
121 122 7.727017 ACGCAAAAGAGTTTTATACTAGTTCG 58.273 34.615 0.00 0.00 37.17 3.95
122 123 8.167345 GGACGCAAAAGAGTTTTATACTAGTTC 58.833 37.037 0.00 0.00 37.17 3.01
123 124 7.118825 GGGACGCAAAAGAGTTTTATACTAGTT 59.881 37.037 0.00 0.00 37.17 2.24
124 125 6.592994 GGGACGCAAAAGAGTTTTATACTAGT 59.407 38.462 0.00 0.00 37.17 2.57
125 126 6.817140 AGGGACGCAAAAGAGTTTTATACTAG 59.183 38.462 0.00 0.00 37.17 2.57
126 127 6.704310 AGGGACGCAAAAGAGTTTTATACTA 58.296 36.000 0.00 0.00 37.17 1.82
127 128 5.557866 AGGGACGCAAAAGAGTTTTATACT 58.442 37.500 0.00 0.00 40.71 2.12
128 129 5.874895 AGGGACGCAAAAGAGTTTTATAC 57.125 39.130 0.00 0.00 0.00 1.47
129 130 5.766174 ACAAGGGACGCAAAAGAGTTTTATA 59.234 36.000 0.00 0.00 0.00 0.98
130 131 4.583073 ACAAGGGACGCAAAAGAGTTTTAT 59.417 37.500 0.00 0.00 0.00 1.40
131 132 3.949113 ACAAGGGACGCAAAAGAGTTTTA 59.051 39.130 0.00 0.00 0.00 1.52
132 133 2.758423 ACAAGGGACGCAAAAGAGTTTT 59.242 40.909 0.00 0.00 0.00 2.43
133 134 2.357952 GACAAGGGACGCAAAAGAGTTT 59.642 45.455 0.00 0.00 0.00 2.66
134 135 1.947456 GACAAGGGACGCAAAAGAGTT 59.053 47.619 0.00 0.00 0.00 3.01
135 136 1.594331 GACAAGGGACGCAAAAGAGT 58.406 50.000 0.00 0.00 0.00 3.24
136 137 0.875059 GGACAAGGGACGCAAAAGAG 59.125 55.000 0.00 0.00 0.00 2.85
137 138 0.882927 CGGACAAGGGACGCAAAAGA 60.883 55.000 0.00 0.00 0.00 2.52
138 139 1.574428 CGGACAAGGGACGCAAAAG 59.426 57.895 0.00 0.00 0.00 2.27
139 140 3.739167 CGGACAAGGGACGCAAAA 58.261 55.556 0.00 0.00 0.00 2.44
144 145 0.794473 GTTAAAGCGGACAAGGGACG 59.206 55.000 0.00 0.00 0.00 4.79
145 146 1.162698 GGTTAAAGCGGACAAGGGAC 58.837 55.000 0.00 0.00 0.00 4.46
146 147 0.037160 GGGTTAAAGCGGACAAGGGA 59.963 55.000 0.00 0.00 0.00 4.20
147 148 0.963856 GGGGTTAAAGCGGACAAGGG 60.964 60.000 0.00 0.00 0.00 3.95
148 149 0.963856 GGGGGTTAAAGCGGACAAGG 60.964 60.000 0.00 0.00 0.00 3.61
149 150 0.037734 AGGGGGTTAAAGCGGACAAG 59.962 55.000 0.00 0.00 0.00 3.16
150 151 0.479378 AAGGGGGTTAAAGCGGACAA 59.521 50.000 0.00 0.00 0.00 3.18
151 152 0.479378 AAAGGGGGTTAAAGCGGACA 59.521 50.000 0.00 0.00 0.00 4.02
152 153 2.495155 TAAAGGGGGTTAAAGCGGAC 57.505 50.000 0.00 0.00 0.00 4.79
153 154 2.376181 ACTTAAAGGGGGTTAAAGCGGA 59.624 45.455 0.00 0.00 0.00 5.54
154 155 2.799017 ACTTAAAGGGGGTTAAAGCGG 58.201 47.619 0.00 0.00 0.00 5.52
155 156 5.335897 GGTTAACTTAAAGGGGGTTAAAGCG 60.336 44.000 5.42 0.00 37.23 4.68
156 157 5.047092 GGGTTAACTTAAAGGGGGTTAAAGC 60.047 44.000 5.42 0.00 37.23 3.51
157 158 5.183713 CGGGTTAACTTAAAGGGGGTTAAAG 59.816 44.000 5.42 0.00 37.23 1.85
158 159 5.076182 CGGGTTAACTTAAAGGGGGTTAAA 58.924 41.667 5.42 0.00 37.23 1.52
159 160 4.105537 ACGGGTTAACTTAAAGGGGGTTAA 59.894 41.667 5.42 0.00 34.42 2.01
160 161 3.655291 ACGGGTTAACTTAAAGGGGGTTA 59.345 43.478 5.42 0.00 0.00 2.85
161 162 2.446666 ACGGGTTAACTTAAAGGGGGTT 59.553 45.455 5.42 0.00 0.00 4.11
162 163 2.065007 ACGGGTTAACTTAAAGGGGGT 58.935 47.619 5.42 0.00 0.00 4.95
163 164 2.885135 ACGGGTTAACTTAAAGGGGG 57.115 50.000 5.42 0.00 0.00 5.40
164 165 3.273434 GCTACGGGTTAACTTAAAGGGG 58.727 50.000 5.42 0.00 0.00 4.79
165 166 2.931969 CGCTACGGGTTAACTTAAAGGG 59.068 50.000 5.42 3.87 0.00 3.95
166 167 3.848726 TCGCTACGGGTTAACTTAAAGG 58.151 45.455 5.42 0.00 0.00 3.11
167 168 4.269363 CCATCGCTACGGGTTAACTTAAAG 59.731 45.833 5.42 0.47 0.00 1.85
168 169 4.183101 CCATCGCTACGGGTTAACTTAAA 58.817 43.478 5.42 0.00 0.00 1.52
169 170 3.784338 CCATCGCTACGGGTTAACTTAA 58.216 45.455 5.42 0.00 0.00 1.85
170 171 2.481795 GCCATCGCTACGGGTTAACTTA 60.482 50.000 5.42 0.00 0.00 2.24
171 172 1.741394 GCCATCGCTACGGGTTAACTT 60.741 52.381 5.42 0.00 0.00 2.66
172 173 0.179092 GCCATCGCTACGGGTTAACT 60.179 55.000 5.42 0.00 0.00 2.24
173 174 0.179092 AGCCATCGCTACGGGTTAAC 60.179 55.000 0.00 0.00 46.08 2.01
174 175 2.204748 AGCCATCGCTACGGGTTAA 58.795 52.632 0.00 0.00 46.08 2.01
175 176 3.944123 AGCCATCGCTACGGGTTA 58.056 55.556 0.00 0.00 46.08 2.85
184 185 0.872021 CTTAGTCGTGGAGCCATCGC 60.872 60.000 0.00 0.00 0.00 4.58
185 186 0.456221 ACTTAGTCGTGGAGCCATCG 59.544 55.000 0.00 0.00 0.00 3.84
186 187 1.202428 GGACTTAGTCGTGGAGCCATC 60.202 57.143 6.27 0.00 32.65 3.51
187 188 0.824759 GGACTTAGTCGTGGAGCCAT 59.175 55.000 6.27 0.00 32.65 4.40
188 189 0.251653 AGGACTTAGTCGTGGAGCCA 60.252 55.000 6.78 0.00 32.65 4.75
189 190 0.896226 AAGGACTTAGTCGTGGAGCC 59.104 55.000 8.39 0.00 32.65 4.70
190 191 2.231721 AGAAAGGACTTAGTCGTGGAGC 59.768 50.000 8.39 0.00 32.65 4.70
191 192 3.759618 AGAGAAAGGACTTAGTCGTGGAG 59.240 47.826 8.39 0.00 32.65 3.86
192 193 3.764218 AGAGAAAGGACTTAGTCGTGGA 58.236 45.455 8.39 0.00 32.65 4.02
193 194 4.096682 CCTAGAGAAAGGACTTAGTCGTGG 59.903 50.000 8.39 0.21 39.15 4.94
194 195 4.942483 TCCTAGAGAAAGGACTTAGTCGTG 59.058 45.833 8.39 0.00 40.86 4.35
195 196 5.176741 TCCTAGAGAAAGGACTTAGTCGT 57.823 43.478 6.27 3.84 40.86 4.34
204 205 2.690497 CGCAGATGTCCTAGAGAAAGGA 59.310 50.000 0.00 0.00 43.58 3.36
205 206 2.223923 CCGCAGATGTCCTAGAGAAAGG 60.224 54.545 0.00 0.00 38.06 3.11
206 207 2.428890 ACCGCAGATGTCCTAGAGAAAG 59.571 50.000 0.00 0.00 0.00 2.62
207 208 2.166459 CACCGCAGATGTCCTAGAGAAA 59.834 50.000 0.00 0.00 0.00 2.52
208 209 1.751351 CACCGCAGATGTCCTAGAGAA 59.249 52.381 0.00 0.00 0.00 2.87
209 210 1.064685 TCACCGCAGATGTCCTAGAGA 60.065 52.381 0.00 0.00 0.00 3.10
210 211 1.066303 GTCACCGCAGATGTCCTAGAG 59.934 57.143 0.00 0.00 0.00 2.43
211 212 1.103803 GTCACCGCAGATGTCCTAGA 58.896 55.000 0.00 0.00 0.00 2.43
212 213 0.817654 TGTCACCGCAGATGTCCTAG 59.182 55.000 0.00 0.00 0.00 3.02
213 214 1.262417 TTGTCACCGCAGATGTCCTA 58.738 50.000 0.00 0.00 0.00 2.94
214 215 0.396435 TTTGTCACCGCAGATGTCCT 59.604 50.000 0.00 0.00 0.00 3.85
215 216 1.069227 GTTTTGTCACCGCAGATGTCC 60.069 52.381 0.00 0.00 0.00 4.02
216 217 1.069227 GGTTTTGTCACCGCAGATGTC 60.069 52.381 0.00 0.00 0.00 3.06
217 218 0.951558 GGTTTTGTCACCGCAGATGT 59.048 50.000 0.00 0.00 0.00 3.06
218 219 0.950836 TGGTTTTGTCACCGCAGATG 59.049 50.000 0.00 0.00 40.09 2.90
219 220 0.951558 GTGGTTTTGTCACCGCAGAT 59.048 50.000 0.00 0.00 45.40 2.90
220 221 1.433053 CGTGGTTTTGTCACCGCAGA 61.433 55.000 4.41 0.00 46.26 4.26
221 222 1.010125 CGTGGTTTTGTCACCGCAG 60.010 57.895 4.41 0.00 46.26 5.18
222 223 1.449778 TCGTGGTTTTGTCACCGCA 60.450 52.632 4.41 0.00 46.26 5.69
223 224 1.010462 GTCGTGGTTTTGTCACCGC 60.010 57.895 0.00 0.00 43.02 5.68
224 225 0.727970 TTGTCGTGGTTTTGTCACCG 59.272 50.000 0.00 0.00 40.09 4.94
225 226 2.923605 TTTGTCGTGGTTTTGTCACC 57.076 45.000 0.00 0.00 37.34 4.02
226 227 3.828786 ACTTTTGTCGTGGTTTTGTCAC 58.171 40.909 0.00 0.00 0.00 3.67
227 228 4.696402 ACTACTTTTGTCGTGGTTTTGTCA 59.304 37.500 0.00 0.00 0.00 3.58
228 229 5.163834 TGACTACTTTTGTCGTGGTTTTGTC 60.164 40.000 0.00 0.00 37.26 3.18
229 230 4.696402 TGACTACTTTTGTCGTGGTTTTGT 59.304 37.500 0.00 0.00 37.26 2.83
230 231 5.224562 TGACTACTTTTGTCGTGGTTTTG 57.775 39.130 0.00 0.00 37.26 2.44
231 232 7.556733 TTATGACTACTTTTGTCGTGGTTTT 57.443 32.000 0.00 0.00 37.26 2.43
232 233 7.556733 TTTATGACTACTTTTGTCGTGGTTT 57.443 32.000 0.00 0.00 37.26 3.27
233 234 7.556733 TTTTATGACTACTTTTGTCGTGGTT 57.443 32.000 0.00 0.00 37.26 3.67
234 235 7.739498 ATTTTATGACTACTTTTGTCGTGGT 57.261 32.000 0.00 0.00 37.26 4.16
235 236 9.755064 CTAATTTTATGACTACTTTTGTCGTGG 57.245 33.333 0.00 0.00 37.26 4.94
236 237 9.262472 GCTAATTTTATGACTACTTTTGTCGTG 57.738 33.333 0.00 0.00 37.26 4.35
237 238 8.995220 TGCTAATTTTATGACTACTTTTGTCGT 58.005 29.630 0.00 0.00 37.26 4.34
238 239 9.820229 TTGCTAATTTTATGACTACTTTTGTCG 57.180 29.630 0.00 0.00 37.26 4.35
240 241 9.607285 CGTTGCTAATTTTATGACTACTTTTGT 57.393 29.630 0.00 0.00 0.00 2.83
241 242 8.575454 GCGTTGCTAATTTTATGACTACTTTTG 58.425 33.333 0.00 0.00 0.00 2.44
242 243 7.480542 CGCGTTGCTAATTTTATGACTACTTTT 59.519 33.333 0.00 0.00 0.00 2.27
263 264 4.692475 GGGGTAGTGTGCCGCGTT 62.692 66.667 4.92 0.00 0.00 4.84
310 311 3.557054 CCGTGGGCTATGCATTGTACTAT 60.557 47.826 3.54 0.00 0.00 2.12
311 312 2.224185 CCGTGGGCTATGCATTGTACTA 60.224 50.000 3.54 0.00 0.00 1.82
312 313 1.475034 CCGTGGGCTATGCATTGTACT 60.475 52.381 3.54 0.00 0.00 2.73
384 385 1.614850 GGGGGTGTATCGGAGCAAAAA 60.615 52.381 0.00 0.00 0.00 1.94
420 421 9.546428 TCTTCATCTTTAATCTGCATCGAAATA 57.454 29.630 0.00 0.00 0.00 1.40
520 521 1.794701 CGAGCATGTTATCGGGATGTG 59.205 52.381 8.62 0.00 35.33 3.21
561 750 6.567050 TCGCCTTCGACTTTTAGTTATATGT 58.433 36.000 0.00 0.00 40.21 2.29
578 767 2.166664 AGGTATGTGAAGTCTCGCCTTC 59.833 50.000 0.00 0.00 41.01 3.46
588 777 4.976731 CGATCCGTCTTTAGGTATGTGAAG 59.023 45.833 0.00 0.00 0.00 3.02
612 801 9.070179 GTAAAACTTTGACAAGGGGAAATAGTA 57.930 33.333 2.08 0.00 33.82 1.82
629 818 7.696453 CGTGACAAGAATGTTCAGTAAAACTTT 59.304 33.333 0.00 0.00 40.74 2.66
639 828 3.469008 ACCTCGTGACAAGAATGTTCA 57.531 42.857 0.00 0.00 40.74 3.18
698 887 7.478667 CGTTGAGTGAAGAAAATATACTTGCAC 59.521 37.037 0.00 0.00 0.00 4.57
789 983 2.814469 GCCTGGGCTTATAGGTTTAGGC 60.814 54.545 4.12 0.00 42.12 3.93
791 985 2.224793 GGGCCTGGGCTTATAGGTTTAG 60.225 54.545 20.47 0.00 41.60 1.85
824 1019 0.105246 TTGTGATGGGCCCTTTTGGT 60.105 50.000 25.70 1.33 38.10 3.67
893 1089 2.416972 GGAGCAGACGAGTACGGAAATT 60.417 50.000 0.00 0.00 44.46 1.82
918 1114 3.804193 CGCAAAGCTTCCGAGGCC 61.804 66.667 12.56 0.00 0.00 5.19
924 1120 2.672996 TGGAGCCGCAAAGCTTCC 60.673 61.111 0.00 0.00 45.15 3.46
1447 1649 2.966309 GCGCAAACACCTTCTCCCG 61.966 63.158 0.30 0.00 0.00 5.14
1596 1798 1.135960 CCTCTTCATCTCCTTCCCCC 58.864 60.000 0.00 0.00 0.00 5.40
1605 1807 1.566703 TCCTCTCCGTCCTCTTCATCT 59.433 52.381 0.00 0.00 0.00 2.90
1608 1810 1.354705 TCTTCCTCTCCGTCCTCTTCA 59.645 52.381 0.00 0.00 0.00 3.02
1635 1837 2.793790 CTCGCCATCTTCTTCTTCATCG 59.206 50.000 0.00 0.00 0.00 3.84
1677 1879 1.595993 CCTCGTCGCCTTCCTCTTCA 61.596 60.000 0.00 0.00 0.00 3.02
1721 1923 7.012044 GCCAACCAATACAGATTTATAACGAGT 59.988 37.037 0.00 0.00 0.00 4.18
1725 1927 9.816354 AAATGCCAACCAATACAGATTTATAAC 57.184 29.630 0.00 0.00 0.00 1.89
1729 1931 7.473735 TCAAATGCCAACCAATACAGATTTA 57.526 32.000 0.00 0.00 0.00 1.40
1827 2071 6.794158 GCAGTACTATAACGTTACCGATACAG 59.206 42.308 10.81 8.94 37.88 2.74
1972 2305 6.074195 TGACAAACCAAATTACGTCTAACTCG 60.074 38.462 0.00 0.00 0.00 4.18
2004 2337 1.382522 ACCACCAGAAGCGCAATATG 58.617 50.000 11.47 5.41 0.00 1.78
2017 2350 5.066634 CAGTTAACAACACAACATACCACCA 59.933 40.000 8.61 0.00 0.00 4.17
2044 2377 9.820229 CAAACTAAATAAACAAATAGCTCGACA 57.180 29.630 0.00 0.00 0.00 4.35
2086 2419 7.103641 TGTTCAAGATGTTACCCTGAATACTC 58.896 38.462 0.00 0.00 0.00 2.59
2259 2869 5.262588 TGTACATCATAGCAGTACACCAG 57.737 43.478 0.00 0.00 42.08 4.00
2316 2963 4.617253 TGTACATCATACCAGCATACCC 57.383 45.455 0.00 0.00 0.00 3.69
2677 3672 2.147150 ACAAGGCGAGAAGAGAAAAGC 58.853 47.619 0.00 0.00 0.00 3.51
2678 3673 3.431572 CAGACAAGGCGAGAAGAGAAAAG 59.568 47.826 0.00 0.00 0.00 2.27
2679 3674 3.181465 ACAGACAAGGCGAGAAGAGAAAA 60.181 43.478 0.00 0.00 0.00 2.29
2680 3675 2.365617 ACAGACAAGGCGAGAAGAGAAA 59.634 45.455 0.00 0.00 0.00 2.52
2681 3676 1.964223 ACAGACAAGGCGAGAAGAGAA 59.036 47.619 0.00 0.00 0.00 2.87
3012 4017 8.854979 TTTGATCAGTTTGTAATTGTGTTCAG 57.145 30.769 0.00 0.00 0.00 3.02
3046 4051 9.668497 CTTGTAATAGGGAGCTTACTTAGTTTT 57.332 33.333 0.00 0.00 0.00 2.43
3048 4053 7.093024 TGCTTGTAATAGGGAGCTTACTTAGTT 60.093 37.037 0.00 0.00 36.16 2.24
3049 4054 6.383147 TGCTTGTAATAGGGAGCTTACTTAGT 59.617 38.462 0.00 0.00 36.16 2.24
3077 4101 5.620206 TCTCTGTCTGGCATTTTTCTTGTA 58.380 37.500 0.00 0.00 0.00 2.41
3078 4102 4.464008 TCTCTGTCTGGCATTTTTCTTGT 58.536 39.130 0.00 0.00 0.00 3.16
3186 4211 4.235079 ACTACAGCAATTGGCCATTCTA 57.765 40.909 6.09 0.00 46.50 2.10
3193 4218 5.629079 ACTTTCTTACTACAGCAATTGGC 57.371 39.130 7.72 0.00 45.30 4.52
3217 4242 7.966753 CCAACATACTGATGCTTTATATCATGC 59.033 37.037 0.00 0.00 36.43 4.06
3254 4279 8.317891 TCAACCGCATATATATGTTTACAAGG 57.682 34.615 21.10 15.04 36.11 3.61
3261 4286 8.318412 TGGAATACTCAACCGCATATATATGTT 58.682 33.333 21.10 7.69 36.11 2.71
3262 4287 7.847096 TGGAATACTCAACCGCATATATATGT 58.153 34.615 21.10 2.06 36.11 2.29
3263 4288 8.893219 ATGGAATACTCAACCGCATATATATG 57.107 34.615 17.01 17.01 36.78 1.78
3409 4437 0.689080 AGGCCGTCATCCATGAGACT 60.689 55.000 0.00 0.00 37.51 3.24
3703 4731 5.765182 GGATGATTACTGGGTCACCTTATTG 59.235 44.000 0.00 0.00 37.76 1.90
3729 4758 7.040686 ACAAATGAGCTTTAGGTTATTGTTCGT 60.041 33.333 0.00 0.00 33.08 3.85
3737 4766 6.065374 TGACCAACAAATGAGCTTTAGGTTA 58.935 36.000 0.00 0.00 30.33 2.85
3746 4775 6.473455 GCAAGTTATATGACCAACAAATGAGC 59.527 38.462 0.00 0.00 0.00 4.26
3795 4824 3.448686 GGCAGCATGTAGTGTGTACTAG 58.551 50.000 0.00 0.00 39.96 2.57
3818 4847 4.320935 GCTAGGAGACAAGTATAGAGCAGC 60.321 50.000 0.00 0.00 0.00 5.25
3832 4861 5.065346 GCAAAAATTGGACTAGCTAGGAGAC 59.935 44.000 24.35 11.59 0.00 3.36
3852 4881 4.902443 TGACAAACAGATAAACGGCAAA 57.098 36.364 0.00 0.00 0.00 3.68
4035 5073 4.425577 AACCGAGATCAAATTCAGTTGC 57.574 40.909 0.00 0.00 0.00 4.17
4085 5123 1.314730 GCACGGAACCCTCTGAAAAA 58.685 50.000 0.00 0.00 0.00 1.94
4136 5177 5.362430 AGAAAATCCTTGCACAAAACTACCA 59.638 36.000 0.00 0.00 0.00 3.25
4137 5178 5.691754 CAGAAAATCCTTGCACAAAACTACC 59.308 40.000 0.00 0.00 0.00 3.18
4138 5179 5.691754 CCAGAAAATCCTTGCACAAAACTAC 59.308 40.000 0.00 0.00 0.00 2.73
4139 5180 5.221422 CCCAGAAAATCCTTGCACAAAACTA 60.221 40.000 0.00 0.00 0.00 2.24
4168 5210 5.167845 CCCACGTCTTGAATAAAATTTGGG 58.832 41.667 0.00 0.00 34.31 4.12
4200 5244 0.907486 TCACATGAAGGAGCAGGAGG 59.093 55.000 0.00 0.00 0.00 4.30
4201 5245 2.775911 TTCACATGAAGGAGCAGGAG 57.224 50.000 0.00 0.00 0.00 3.69
4202 5246 3.726557 ATTTCACATGAAGGAGCAGGA 57.273 42.857 0.00 0.00 35.21 3.86
4228 5272 5.087397 CAGCGCCTCGATTTATAGTACTAC 58.913 45.833 2.29 0.00 0.00 2.73
4229 5273 4.999311 TCAGCGCCTCGATTTATAGTACTA 59.001 41.667 2.29 4.77 0.00 1.82
4230 5274 3.819337 TCAGCGCCTCGATTTATAGTACT 59.181 43.478 2.29 0.00 0.00 2.73
4263 5307 4.356405 ACAACCATGATGAAGACAGACA 57.644 40.909 0.00 0.00 0.00 3.41
4281 5337 9.233649 TGAAAAACAGAGTACCTTCTTTTACAA 57.766 29.630 0.00 0.00 0.00 2.41
4299 5359 5.381757 AGGTGTAGCTACCAATGAAAAACA 58.618 37.500 21.01 0.00 43.37 2.83
4330 5390 2.125912 CTGGCGCGCACTCTAACT 60.126 61.111 34.42 0.00 0.00 2.24
4342 5402 2.202770 CTGCAGAGAGAGCTGGCG 60.203 66.667 8.42 0.00 36.41 5.69
4343 5403 2.512057 GCTGCAGAGAGAGCTGGC 60.512 66.667 20.43 0.00 36.41 4.85
4344 5404 2.202770 CGCTGCAGAGAGAGCTGG 60.203 66.667 20.43 0.00 36.41 4.85
4361 5426 0.033504 TTGCAACAGTCGTCCTCTCC 59.966 55.000 0.00 0.00 0.00 3.71
4379 5444 2.283145 AACTGGCATCTGCTCTGTTT 57.717 45.000 1.70 0.00 41.70 2.83
4386 5451 0.964358 AGGCTCAAACTGGCATCTGC 60.964 55.000 0.00 0.00 41.14 4.26
4390 5455 0.111061 TGTCAGGCTCAAACTGGCAT 59.889 50.000 0.00 0.00 44.82 4.40
4401 5466 1.576577 TCAGTCCATGATGTCAGGCT 58.423 50.000 0.00 0.00 31.12 4.58
4414 5479 1.923356 TTGAGGGGCAAATTCAGTCC 58.077 50.000 0.00 0.00 32.46 3.85
4430 5495 7.973388 AGATCACAAAATTCAACTTCGTTTTGA 59.027 29.630 14.18 2.27 41.61 2.69
4432 5497 8.702163 AAGATCACAAAATTCAACTTCGTTTT 57.298 26.923 0.00 0.00 0.00 2.43
4433 5498 9.796120 TTAAGATCACAAAATTCAACTTCGTTT 57.204 25.926 0.00 0.00 0.00 3.60
4434 5499 9.796120 TTTAAGATCACAAAATTCAACTTCGTT 57.204 25.926 0.00 0.00 0.00 3.85
4485 5623 0.178964 TTGGCAAGGACCCCTCAAAG 60.179 55.000 0.00 0.00 30.89 2.77
4494 5632 1.227853 ACGTCCACTTGGCAAGGAC 60.228 57.895 29.26 25.44 46.48 3.85
4500 5638 1.369625 CTATTCCACGTCCACTTGGC 58.630 55.000 0.00 0.00 35.46 4.52
4522 5661 0.033601 ACCACAAGCCCACTGTTGAA 60.034 50.000 0.00 0.00 0.00 2.69
4523 5662 0.840617 TACCACAAGCCCACTGTTGA 59.159 50.000 0.00 0.00 0.00 3.18
4524 5663 1.238439 CTACCACAAGCCCACTGTTG 58.762 55.000 0.00 0.00 0.00 3.33
4525 5664 0.843984 ACTACCACAAGCCCACTGTT 59.156 50.000 0.00 0.00 0.00 3.16
4526 5665 0.108585 CACTACCACAAGCCCACTGT 59.891 55.000 0.00 0.00 0.00 3.55
4527 5666 0.396435 TCACTACCACAAGCCCACTG 59.604 55.000 0.00 0.00 0.00 3.66
4529 5668 1.003118 TCATCACTACCACAAGCCCAC 59.997 52.381 0.00 0.00 0.00 4.61
4530 5669 1.278985 CTCATCACTACCACAAGCCCA 59.721 52.381 0.00 0.00 0.00 5.36
4532 5671 3.334583 TTCTCATCACTACCACAAGCC 57.665 47.619 0.00 0.00 0.00 4.35
4534 5673 4.556233 TCGTTTCTCATCACTACCACAAG 58.444 43.478 0.00 0.00 0.00 3.16
4535 5674 4.556233 CTCGTTTCTCATCACTACCACAA 58.444 43.478 0.00 0.00 0.00 3.33
4536 5675 3.614150 GCTCGTTTCTCATCACTACCACA 60.614 47.826 0.00 0.00 0.00 4.17
4537 5676 2.924290 GCTCGTTTCTCATCACTACCAC 59.076 50.000 0.00 0.00 0.00 4.16
4538 5677 2.826128 AGCTCGTTTCTCATCACTACCA 59.174 45.455 0.00 0.00 0.00 3.25
4539 5678 3.119459 TGAGCTCGTTTCTCATCACTACC 60.119 47.826 9.64 0.00 35.81 3.18
4541 5680 4.991153 ATGAGCTCGTTTCTCATCACTA 57.009 40.909 9.64 0.00 45.31 2.74
4542 5681 3.883830 ATGAGCTCGTTTCTCATCACT 57.116 42.857 9.64 0.00 45.31 3.41
4543 5682 4.677584 ACTATGAGCTCGTTTCTCATCAC 58.322 43.478 14.93 0.00 45.31 3.06
4564 5745 6.712095 TCAGGATGCTTTGGATGACAATATAC 59.288 38.462 0.00 0.00 35.64 1.47
4570 5751 2.040145 TGTCAGGATGCTTTGGATGACA 59.960 45.455 1.92 1.92 43.33 3.58
4571 5752 2.715046 TGTCAGGATGCTTTGGATGAC 58.285 47.619 0.00 0.00 38.00 3.06
4573 5754 2.821378 TGTTGTCAGGATGCTTTGGATG 59.179 45.455 0.00 0.00 34.76 3.51
4574 5755 3.159213 TGTTGTCAGGATGCTTTGGAT 57.841 42.857 0.00 0.00 34.76 3.41
4575 5756 2.655090 TGTTGTCAGGATGCTTTGGA 57.345 45.000 0.00 0.00 34.76 3.53
4576 5757 3.508793 AGATTGTTGTCAGGATGCTTTGG 59.491 43.478 0.00 0.00 34.76 3.28
4577 5758 4.670992 CGAGATTGTTGTCAGGATGCTTTG 60.671 45.833 0.00 0.00 34.76 2.77
4578 5759 3.438087 CGAGATTGTTGTCAGGATGCTTT 59.562 43.478 0.00 0.00 34.76 3.51
4579 5760 3.005554 CGAGATTGTTGTCAGGATGCTT 58.994 45.455 0.00 0.00 34.76 3.91
4583 5766 2.768253 TGCGAGATTGTTGTCAGGAT 57.232 45.000 0.00 0.00 0.00 3.24
4584 5767 2.542020 TTGCGAGATTGTTGTCAGGA 57.458 45.000 0.00 0.00 0.00 3.86
4588 5771 4.351192 ACAAGTTTTGCGAGATTGTTGTC 58.649 39.130 0.00 0.00 30.18 3.18
4589 5772 4.351192 GACAAGTTTTGCGAGATTGTTGT 58.649 39.130 0.00 0.00 34.41 3.32
4599 5782 2.323939 TTATGCCGACAAGTTTTGCG 57.676 45.000 0.00 0.00 0.00 4.85
4600 5783 4.048504 ACTTTTATGCCGACAAGTTTTGC 58.951 39.130 0.00 0.00 0.00 3.68
4605 5788 9.609346 AACTTATATACTTTTATGCCGACAAGT 57.391 29.630 0.00 0.00 33.95 3.16
4609 5792 8.709646 CCTCAACTTATATACTTTTATGCCGAC 58.290 37.037 0.00 0.00 0.00 4.79
4612 5795 9.998106 TCTCCTCAACTTATATACTTTTATGCC 57.002 33.333 0.00 0.00 0.00 4.40
4625 5808 9.495572 CAAGTCTAACTTTTCTCCTCAACTTAT 57.504 33.333 0.00 0.00 36.03 1.73
4626 5809 7.441458 GCAAGTCTAACTTTTCTCCTCAACTTA 59.559 37.037 0.00 0.00 36.03 2.24
4629 5812 5.760743 AGCAAGTCTAACTTTTCTCCTCAAC 59.239 40.000 0.00 0.00 36.03 3.18
4698 6190 7.307101 GCCGAAGTTTATGATTTGCTTCAAAAA 60.307 33.333 0.00 0.00 36.90 1.94
4699 6191 6.145371 GCCGAAGTTTATGATTTGCTTCAAAA 59.855 34.615 0.00 0.00 36.90 2.44
4700 6192 5.633182 GCCGAAGTTTATGATTTGCTTCAAA 59.367 36.000 0.00 0.00 37.75 2.69
4701 6193 5.160641 GCCGAAGTTTATGATTTGCTTCAA 58.839 37.500 0.00 0.00 36.34 2.69
4756 6248 1.481772 TGCAAAGAAAAACCAGCAGCT 59.518 42.857 0.00 0.00 0.00 4.24
4757 6249 1.594397 GTGCAAAGAAAAACCAGCAGC 59.406 47.619 0.00 0.00 32.03 5.25
4758 6250 1.854126 CGTGCAAAGAAAAACCAGCAG 59.146 47.619 0.00 0.00 32.03 4.24
4759 6251 1.474478 TCGTGCAAAGAAAAACCAGCA 59.526 42.857 0.00 0.00 0.00 4.41
4760 6252 2.202295 TCGTGCAAAGAAAAACCAGC 57.798 45.000 0.00 0.00 0.00 4.85
4762 6254 2.287308 CCGATCGTGCAAAGAAAAACCA 60.287 45.455 15.09 0.00 0.00 3.67
4763 6255 2.287368 ACCGATCGTGCAAAGAAAAACC 60.287 45.455 15.09 0.00 0.00 3.27
4764 6256 2.719046 CACCGATCGTGCAAAGAAAAAC 59.281 45.455 15.09 0.00 35.18 2.43
4769 6261 1.270094 ACTTCACCGATCGTGCAAAGA 60.270 47.619 15.09 0.00 42.69 2.52
4779 6271 2.014128 CCGCCATAAAACTTCACCGAT 58.986 47.619 0.00 0.00 0.00 4.18
4788 6280 3.780902 CCAAATTCTCCCGCCATAAAAC 58.219 45.455 0.00 0.00 0.00 2.43
4882 6377 1.078567 CAGGAGTTGGAGCTGGAGC 60.079 63.158 0.00 0.00 42.49 4.70
4888 6389 1.446966 GTCGAGCAGGAGTTGGAGC 60.447 63.158 0.00 0.00 0.00 4.70
4905 6406 3.496160 GCGAGAGATAGAAGGAGAGGAGT 60.496 52.174 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.