Multiple sequence alignment - TraesCS4D01G017300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G017300 chr4D 100.000 6662 0 0 1 6662 7752104 7758765 0.000000e+00 12303.0
1 TraesCS4D01G017300 chr4D 95.122 41 2 0 1867 1907 439123275 439123235 1.550000e-06 65.8
2 TraesCS4D01G017300 chr4B 88.474 2438 138 47 806 3174 13981849 13979486 0.000000e+00 2813.0
3 TraesCS4D01G017300 chr4B 91.703 1145 49 11 3501 4616 13979391 13978264 0.000000e+00 1546.0
4 TraesCS4D01G017300 chr4B 90.598 1170 72 20 5516 6662 13977396 13976242 0.000000e+00 1517.0
5 TraesCS4D01G017300 chr4B 91.744 751 36 4 4653 5400 13978270 13977543 0.000000e+00 1020.0
6 TraesCS4D01G017300 chr4B 85.911 582 58 16 173 740 516976610 516976039 3.440000e-167 599.0
7 TraesCS4D01G017300 chr4B 94.898 98 4 1 3366 3463 13979486 13979390 1.160000e-32 152.0
8 TraesCS4D01G017300 chr4B 95.122 41 2 0 1867 1907 543285802 543285762 1.550000e-06 65.8
9 TraesCS4D01G017300 chr4A 90.846 1595 74 32 5113 6662 595847938 595846371 0.000000e+00 2071.0
10 TraesCS4D01G017300 chr4A 94.046 1226 51 9 2248 3461 595851568 595850353 0.000000e+00 1840.0
11 TraesCS4D01G017300 chr4A 87.215 1447 96 36 804 2213 595852962 595851568 0.000000e+00 1565.0
12 TraesCS4D01G017300 chr4A 93.079 968 47 5 4172 5133 595849069 595848116 0.000000e+00 1399.0
13 TraesCS4D01G017300 chr4A 89.685 698 29 4 3502 4174 595850351 595849672 0.000000e+00 850.0
14 TraesCS4D01G017300 chr4A 95.122 41 2 0 1867 1907 28563655 28563615 1.550000e-06 65.8
15 TraesCS4D01G017300 chr7A 85.690 594 65 8 159 740 634327961 634327376 5.710000e-170 608.0
16 TraesCS4D01G017300 chr7A 79.800 500 77 9 181 666 199859610 199860099 6.400000e-90 342.0
17 TraesCS4D01G017300 chr7A 86.806 144 18 1 1 144 127042239 127042381 6.910000e-35 159.0
18 TraesCS4D01G017300 chr7A 95.556 45 2 0 3458 3502 56727745 56727701 9.270000e-09 73.1
19 TraesCS4D01G017300 chr7D 85.862 580 62 11 173 740 7528411 7527840 3.440000e-167 599.0
20 TraesCS4D01G017300 chr7D 83.567 499 55 13 181 663 611665387 611664900 6.130000e-120 442.0
21 TraesCS4D01G017300 chr6D 85.763 583 62 11 173 742 460865769 460866343 1.240000e-166 597.0
22 TraesCS4D01G017300 chr6D 82.258 496 67 7 181 663 51193355 51192868 6.220000e-110 409.0
23 TraesCS4D01G017300 chr6D 95.556 45 2 0 3458 3502 36692822 36692866 9.270000e-09 73.1
24 TraesCS4D01G017300 chr1B 85.789 570 72 6 172 740 402152984 402153545 4.450000e-166 595.0
25 TraesCS4D01G017300 chr1B 84.413 571 84 5 172 740 532699055 532698488 2.100000e-154 556.0
26 TraesCS4D01G017300 chr1B 81.616 495 72 13 181 663 41702922 41703409 6.260000e-105 392.0
27 TraesCS4D01G017300 chr1B 93.878 49 2 1 3462 3510 480369712 480369665 9.270000e-09 73.1
28 TraesCS4D01G017300 chr1D 85.813 578 60 12 175 739 213374408 213373840 1.600000e-165 593.0
29 TraesCS4D01G017300 chr1D 87.473 471 49 7 272 740 335039189 335039651 9.830000e-148 534.0
30 TraesCS4D01G017300 chr2D 85.026 581 66 9 175 742 458731814 458731242 7.490000e-159 571.0
31 TraesCS4D01G017300 chr2D 97.826 46 1 0 3457 3502 491377043 491376998 5.540000e-11 80.5
32 TraesCS4D01G017300 chr2D 97.778 45 1 0 3458 3502 217050456 217050500 1.990000e-10 78.7
33 TraesCS4D01G017300 chr2D 95.556 45 2 0 3458 3502 596590490 596590446 9.270000e-09 73.1
34 TraesCS4D01G017300 chr5B 83.636 495 62 6 181 663 658467107 658466620 1.320000e-121 448.0
35 TraesCS4D01G017300 chr5B 81.911 492 70 6 181 660 96905423 96905907 1.350000e-106 398.0
36 TraesCS4D01G017300 chr5B 85.526 76 10 1 3001 3075 13714778 13714703 1.990000e-10 78.7
37 TraesCS4D01G017300 chr2B 77.935 494 87 10 181 661 206758022 206757538 8.450000e-74 289.0
38 TraesCS4D01G017300 chr2B 87.500 144 17 1 1 144 653615427 653615569 1.490000e-36 165.0
39 TraesCS4D01G017300 chr7B 94.340 53 1 2 3460 3511 553217858 553217807 5.540000e-11 80.5
40 TraesCS4D01G017300 chr5D 85.526 76 10 1 3001 3075 14975545 14975470 1.990000e-10 78.7
41 TraesCS4D01G017300 chr5A 85.526 76 10 1 3001 3075 11531707 11531632 1.990000e-10 78.7
42 TraesCS4D01G017300 chr3D 94.118 51 3 0 3460 3510 39620182 39620232 1.990000e-10 78.7
43 TraesCS4D01G017300 chr6A 97.674 43 1 0 3460 3502 3320519 3320561 2.580000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G017300 chr4D 7752104 7758765 6661 False 12303.0 12303 100.0000 1 6662 1 chr4D.!!$F1 6661
1 TraesCS4D01G017300 chr4B 13976242 13981849 5607 True 1409.6 2813 91.4834 806 6662 5 chr4B.!!$R3 5856
2 TraesCS4D01G017300 chr4B 516976039 516976610 571 True 599.0 599 85.9110 173 740 1 chr4B.!!$R1 567
3 TraesCS4D01G017300 chr4A 595846371 595852962 6591 True 1545.0 2071 90.9742 804 6662 5 chr4A.!!$R2 5858
4 TraesCS4D01G017300 chr7A 634327376 634327961 585 True 608.0 608 85.6900 159 740 1 chr7A.!!$R2 581
5 TraesCS4D01G017300 chr7D 7527840 7528411 571 True 599.0 599 85.8620 173 740 1 chr7D.!!$R1 567
6 TraesCS4D01G017300 chr6D 460865769 460866343 574 False 597.0 597 85.7630 173 742 1 chr6D.!!$F2 569
7 TraesCS4D01G017300 chr1B 402152984 402153545 561 False 595.0 595 85.7890 172 740 1 chr1B.!!$F2 568
8 TraesCS4D01G017300 chr1B 532698488 532699055 567 True 556.0 556 84.4130 172 740 1 chr1B.!!$R2 568
9 TraesCS4D01G017300 chr1D 213373840 213374408 568 True 593.0 593 85.8130 175 739 1 chr1D.!!$R1 564
10 TraesCS4D01G017300 chr2D 458731242 458731814 572 True 571.0 571 85.0260 175 742 1 chr2D.!!$R1 567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
75 76 0.108186 TCCATGCAACGGACTAGCTG 60.108 55.0 4.15 0.0 0.00 4.24 F
122 123 0.320683 TGTGTGAATCGTCCAGCAGG 60.321 55.0 0.00 0.0 0.00 4.85 F
507 522 0.323360 TTAAGGGCAATGGCTTCGCT 60.323 50.0 6.78 0.0 40.87 4.93 F
1727 1802 0.033504 GAGTTCCAGGCAAGTCGTCA 59.966 55.0 0.00 0.0 0.00 4.35 F
2419 2507 0.605589 AAAAGCAGGGTGCCGTACTC 60.606 55.0 0.00 0.0 46.52 2.59 F
2886 2989 0.675083 TGTGTTTGCTGCTTCATGGG 59.325 50.0 0.00 0.0 0.00 4.00 F
2887 2990 0.675633 GTGTTTGCTGCTTCATGGGT 59.324 50.0 0.00 0.0 0.00 4.51 F
4462 5224 0.772124 TCCACAGCCCTTTCCTCCTT 60.772 55.0 0.00 0.0 0.00 3.36 F
4939 5708 0.098376 GCAAGAGAGCTGATTTGGCG 59.902 55.0 0.00 0.0 34.52 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1270 1337 0.179084 GGCTACTGGCGCAGAACATA 60.179 55.000 10.83 0.00 42.94 2.29 R
1635 1709 0.449388 CATCGCCAAGAAGAACCTGC 59.551 55.000 0.00 0.00 0.00 4.85 R
2434 2522 0.179018 GAAATCGTAGCCCCTGCCAT 60.179 55.000 0.00 0.00 38.69 4.40 R
3483 3591 0.410663 TTACTCCCTCCGTCCCAGAA 59.589 55.000 0.00 0.00 0.00 3.02 R
3484 3592 0.635009 ATTACTCCCTCCGTCCCAGA 59.365 55.000 0.00 0.00 0.00 3.86 R
4393 5155 0.807496 AATTTCTCTCTGCGCCTTGC 59.193 50.000 4.18 0.00 46.70 4.01 R
4488 5250 1.202927 ACATTGGGCTGTTAGTGCACT 60.203 47.619 25.12 25.12 34.45 4.40 R
5408 6376 0.260230 TCCAGAAACCAACAGCCCAA 59.740 50.000 0.00 0.00 0.00 4.12 R
6053 7141 0.312729 TATATTCGCTCTTCGCCGCA 59.687 50.000 0.00 0.00 38.27 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.681705 CACACGATGCATGTTGGAC 57.318 52.632 2.46 0.00 0.00 4.02
26 27 0.179217 CACACGATGCATGTTGGACG 60.179 55.000 2.46 2.20 0.00 4.79
27 28 0.320334 ACACGATGCATGTTGGACGA 60.320 50.000 2.46 0.00 0.00 4.20
28 29 1.009078 CACGATGCATGTTGGACGAT 58.991 50.000 2.46 0.00 0.00 3.73
29 30 1.398041 CACGATGCATGTTGGACGATT 59.602 47.619 2.46 0.00 0.00 3.34
30 31 1.398041 ACGATGCATGTTGGACGATTG 59.602 47.619 2.46 0.00 0.00 2.67
31 32 1.831343 GATGCATGTTGGACGATTGC 58.169 50.000 2.46 0.00 0.00 3.56
32 33 1.402968 GATGCATGTTGGACGATTGCT 59.597 47.619 2.46 0.00 34.47 3.91
33 34 0.522626 TGCATGTTGGACGATTGCTG 59.477 50.000 0.00 0.00 34.47 4.41
34 35 0.179156 GCATGTTGGACGATTGCTGG 60.179 55.000 0.00 0.00 0.00 4.85
35 36 1.452110 CATGTTGGACGATTGCTGGA 58.548 50.000 0.00 0.00 0.00 3.86
36 37 1.131126 CATGTTGGACGATTGCTGGAC 59.869 52.381 0.00 0.00 0.00 4.02
37 38 0.948623 TGTTGGACGATTGCTGGACG 60.949 55.000 0.00 0.00 0.00 4.79
38 39 0.669318 GTTGGACGATTGCTGGACGA 60.669 55.000 0.00 0.00 0.00 4.20
39 40 0.669318 TTGGACGATTGCTGGACGAC 60.669 55.000 0.00 0.00 0.00 4.34
40 41 1.080093 GGACGATTGCTGGACGACA 60.080 57.895 0.00 0.00 0.00 4.35
50 51 3.696306 TGGACGACAGTGCAAATCA 57.304 47.368 0.00 0.00 45.75 2.57
51 52 1.511850 TGGACGACAGTGCAAATCAG 58.488 50.000 0.00 0.00 45.75 2.90
52 53 1.069978 TGGACGACAGTGCAAATCAGA 59.930 47.619 0.00 0.00 45.75 3.27
53 54 1.461127 GGACGACAGTGCAAATCAGAC 59.539 52.381 0.00 0.00 38.67 3.51
54 55 1.461127 GACGACAGTGCAAATCAGACC 59.539 52.381 0.00 0.00 0.00 3.85
55 56 1.202639 ACGACAGTGCAAATCAGACCA 60.203 47.619 0.00 0.00 0.00 4.02
56 57 2.079158 CGACAGTGCAAATCAGACCAT 58.921 47.619 0.00 0.00 0.00 3.55
57 58 2.094894 CGACAGTGCAAATCAGACCATC 59.905 50.000 0.00 0.00 0.00 3.51
58 59 2.421424 GACAGTGCAAATCAGACCATCC 59.579 50.000 0.00 0.00 0.00 3.51
59 60 2.224843 ACAGTGCAAATCAGACCATCCA 60.225 45.455 0.00 0.00 0.00 3.41
60 61 3.021695 CAGTGCAAATCAGACCATCCAT 58.978 45.455 0.00 0.00 0.00 3.41
61 62 3.021695 AGTGCAAATCAGACCATCCATG 58.978 45.455 0.00 0.00 0.00 3.66
62 63 1.752498 TGCAAATCAGACCATCCATGC 59.248 47.619 0.00 0.00 0.00 4.06
63 64 1.752498 GCAAATCAGACCATCCATGCA 59.248 47.619 0.00 0.00 33.00 3.96
64 65 2.166870 GCAAATCAGACCATCCATGCAA 59.833 45.455 0.00 0.00 33.00 4.08
65 66 3.777478 CAAATCAGACCATCCATGCAAC 58.223 45.455 0.00 0.00 0.00 4.17
66 67 1.671979 ATCAGACCATCCATGCAACG 58.328 50.000 0.00 0.00 0.00 4.10
67 68 0.392863 TCAGACCATCCATGCAACGG 60.393 55.000 0.00 0.00 0.00 4.44
68 69 0.392863 CAGACCATCCATGCAACGGA 60.393 55.000 10.41 10.41 36.84 4.69
69 70 0.392998 AGACCATCCATGCAACGGAC 60.393 55.000 10.23 0.00 34.69 4.79
70 71 0.392998 GACCATCCATGCAACGGACT 60.393 55.000 10.23 0.00 34.69 3.85
71 72 0.908910 ACCATCCATGCAACGGACTA 59.091 50.000 10.23 0.00 34.69 2.59
72 73 1.134401 ACCATCCATGCAACGGACTAG 60.134 52.381 10.23 5.35 34.69 2.57
73 74 0.940126 CATCCATGCAACGGACTAGC 59.060 55.000 10.23 0.00 34.69 3.42
74 75 0.833287 ATCCATGCAACGGACTAGCT 59.167 50.000 10.23 0.00 34.69 3.32
75 76 0.108186 TCCATGCAACGGACTAGCTG 60.108 55.000 4.15 0.00 0.00 4.24
76 77 1.709147 CCATGCAACGGACTAGCTGC 61.709 60.000 0.00 0.00 34.13 5.25
77 78 1.020861 CATGCAACGGACTAGCTGCA 61.021 55.000 1.02 0.00 45.57 4.41
78 79 0.321564 ATGCAACGGACTAGCTGCAA 60.322 50.000 1.02 0.00 44.82 4.08
79 80 0.321564 TGCAACGGACTAGCTGCAAT 60.322 50.000 1.02 0.00 39.84 3.56
80 81 1.066502 TGCAACGGACTAGCTGCAATA 60.067 47.619 1.02 0.00 39.84 1.90
81 82 1.327764 GCAACGGACTAGCTGCAATAC 59.672 52.381 1.02 0.00 33.76 1.89
82 83 2.616960 CAACGGACTAGCTGCAATACA 58.383 47.619 1.02 0.00 0.00 2.29
95 96 5.518848 CTGCAATACAGCCAATGGATTAA 57.481 39.130 2.05 0.00 40.76 1.40
96 97 5.261209 TGCAATACAGCCAATGGATTAAC 57.739 39.130 2.05 0.00 40.76 2.01
97 98 4.708909 TGCAATACAGCCAATGGATTAACA 59.291 37.500 2.05 0.00 40.76 2.41
98 99 5.363292 TGCAATACAGCCAATGGATTAACAT 59.637 36.000 2.05 0.00 40.76 2.71
99 100 6.548993 TGCAATACAGCCAATGGATTAACATA 59.451 34.615 2.05 0.00 40.76 2.29
100 101 7.233144 TGCAATACAGCCAATGGATTAACATAT 59.767 33.333 2.05 0.00 40.76 1.78
101 102 7.756722 GCAATACAGCCAATGGATTAACATATC 59.243 37.037 2.05 0.00 40.76 1.63
102 103 5.947228 ACAGCCAATGGATTAACATATCG 57.053 39.130 2.05 0.00 0.00 2.92
103 104 5.376625 ACAGCCAATGGATTAACATATCGT 58.623 37.500 2.05 0.00 0.00 3.73
104 105 5.239306 ACAGCCAATGGATTAACATATCGTG 59.761 40.000 2.05 0.00 0.00 4.35
105 106 5.239306 CAGCCAATGGATTAACATATCGTGT 59.761 40.000 2.05 0.00 44.84 4.49
106 107 5.239306 AGCCAATGGATTAACATATCGTGTG 59.761 40.000 2.05 0.00 41.14 3.82
107 108 5.008613 GCCAATGGATTAACATATCGTGTGT 59.991 40.000 2.05 0.00 41.14 3.72
108 109 6.429624 CCAATGGATTAACATATCGTGTGTG 58.570 40.000 0.00 0.00 41.14 3.82
109 110 6.259829 CCAATGGATTAACATATCGTGTGTGA 59.740 38.462 0.00 0.00 41.14 3.58
110 111 7.201688 CCAATGGATTAACATATCGTGTGTGAA 60.202 37.037 0.00 0.00 41.14 3.18
111 112 8.344831 CAATGGATTAACATATCGTGTGTGAAT 58.655 33.333 1.57 1.57 41.14 2.57
112 113 7.477144 TGGATTAACATATCGTGTGTGAATC 57.523 36.000 14.12 14.12 42.75 2.52
113 114 6.200097 TGGATTAACATATCGTGTGTGAATCG 59.800 38.462 15.14 0.00 43.70 3.34
114 115 6.200286 GGATTAACATATCGTGTGTGAATCGT 59.800 38.462 15.14 0.00 43.70 3.73
115 116 6.563398 TTAACATATCGTGTGTGAATCGTC 57.437 37.500 0.00 0.00 41.14 4.20
116 117 3.444916 ACATATCGTGTGTGAATCGTCC 58.555 45.455 0.00 0.00 40.28 4.79
117 118 3.119280 ACATATCGTGTGTGAATCGTCCA 60.119 43.478 0.00 0.00 40.28 4.02
118 119 1.996292 ATCGTGTGTGAATCGTCCAG 58.004 50.000 0.00 0.00 0.00 3.86
119 120 0.666274 TCGTGTGTGAATCGTCCAGC 60.666 55.000 0.00 0.00 0.00 4.85
120 121 0.943835 CGTGTGTGAATCGTCCAGCA 60.944 55.000 0.00 0.00 0.00 4.41
121 122 0.792640 GTGTGTGAATCGTCCAGCAG 59.207 55.000 0.00 0.00 0.00 4.24
122 123 0.320683 TGTGTGAATCGTCCAGCAGG 60.321 55.000 0.00 0.00 0.00 4.85
123 124 1.375908 TGTGAATCGTCCAGCAGGC 60.376 57.895 0.00 0.00 33.74 4.85
124 125 1.375908 GTGAATCGTCCAGCAGGCA 60.376 57.895 0.00 0.00 33.74 4.75
125 126 0.745845 GTGAATCGTCCAGCAGGCAT 60.746 55.000 0.00 0.00 33.74 4.40
126 127 0.462581 TGAATCGTCCAGCAGGCATC 60.463 55.000 0.00 0.00 33.74 3.91
127 128 1.493950 GAATCGTCCAGCAGGCATCG 61.494 60.000 0.00 0.00 33.74 3.84
128 129 2.244117 AATCGTCCAGCAGGCATCGT 62.244 55.000 0.00 0.00 33.74 3.73
129 130 2.244117 ATCGTCCAGCAGGCATCGTT 62.244 55.000 0.00 0.00 33.74 3.85
130 131 2.034879 CGTCCAGCAGGCATCGTTT 61.035 57.895 0.00 0.00 33.74 3.60
131 132 1.503542 GTCCAGCAGGCATCGTTTG 59.496 57.895 0.00 0.00 33.74 2.93
132 133 1.073025 TCCAGCAGGCATCGTTTGT 59.927 52.632 0.00 0.00 33.74 2.83
133 134 1.210931 CCAGCAGGCATCGTTTGTG 59.789 57.895 0.00 0.00 0.00 3.33
134 135 1.236616 CCAGCAGGCATCGTTTGTGA 61.237 55.000 0.00 0.00 0.00 3.58
135 136 0.592637 CAGCAGGCATCGTTTGTGAA 59.407 50.000 0.00 0.00 0.00 3.18
136 137 0.877071 AGCAGGCATCGTTTGTGAAG 59.123 50.000 0.00 0.00 0.00 3.02
137 138 0.593128 GCAGGCATCGTTTGTGAAGT 59.407 50.000 0.00 0.00 0.00 3.01
138 139 1.804151 GCAGGCATCGTTTGTGAAGTA 59.196 47.619 0.00 0.00 0.00 2.24
139 140 2.159653 GCAGGCATCGTTTGTGAAGTAG 60.160 50.000 0.00 0.00 0.00 2.57
140 141 3.067106 CAGGCATCGTTTGTGAAGTAGT 58.933 45.455 0.00 0.00 0.00 2.73
141 142 3.498397 CAGGCATCGTTTGTGAAGTAGTT 59.502 43.478 0.00 0.00 0.00 2.24
142 143 4.024048 CAGGCATCGTTTGTGAAGTAGTTT 60.024 41.667 0.00 0.00 0.00 2.66
143 144 4.213482 AGGCATCGTTTGTGAAGTAGTTTC 59.787 41.667 0.00 0.00 36.29 2.78
144 145 4.464112 GCATCGTTTGTGAAGTAGTTTCC 58.536 43.478 0.00 0.00 34.77 3.13
145 146 4.213482 GCATCGTTTGTGAAGTAGTTTCCT 59.787 41.667 0.00 0.00 34.77 3.36
146 147 5.277828 GCATCGTTTGTGAAGTAGTTTCCTT 60.278 40.000 0.00 0.00 34.77 3.36
147 148 6.725246 CATCGTTTGTGAAGTAGTTTCCTTT 58.275 36.000 0.00 0.00 34.77 3.11
148 149 6.354039 TCGTTTGTGAAGTAGTTTCCTTTC 57.646 37.500 0.00 0.00 34.77 2.62
149 150 6.110707 TCGTTTGTGAAGTAGTTTCCTTTCT 58.889 36.000 0.00 0.00 34.77 2.52
150 151 6.596497 TCGTTTGTGAAGTAGTTTCCTTTCTT 59.404 34.615 0.00 0.00 34.77 2.52
151 152 7.765360 TCGTTTGTGAAGTAGTTTCCTTTCTTA 59.235 33.333 0.00 0.00 34.77 2.10
152 153 8.557029 CGTTTGTGAAGTAGTTTCCTTTCTTAT 58.443 33.333 0.00 0.00 34.77 1.73
155 156 9.720769 TTGTGAAGTAGTTTCCTTTCTTATAGG 57.279 33.333 0.00 0.00 34.77 2.57
156 157 8.877195 TGTGAAGTAGTTTCCTTTCTTATAGGT 58.123 33.333 0.00 0.00 34.77 3.08
164 165 9.070210 AGTTTCCTTTCTTATAGGTATTTCCCT 57.930 33.333 0.00 0.00 38.70 4.20
165 166 9.121658 GTTTCCTTTCTTATAGGTATTTCCCTG 57.878 37.037 0.00 0.00 35.97 4.45
168 169 7.626084 TCCTTTCTTATAGGTATTTCCCTGACA 59.374 37.037 0.00 0.00 35.97 3.58
170 171 9.681062 CTTTCTTATAGGTATTTCCCTGACAAA 57.319 33.333 0.00 0.00 35.97 2.83
200 201 2.288763 CGTTGGGGTTGGATTTGGAAAG 60.289 50.000 0.00 0.00 0.00 2.62
208 209 3.507162 TGGATTTGGAAAGCAGTCTGA 57.493 42.857 3.32 0.00 0.00 3.27
218 219 1.451067 AGCAGTCTGATCAAGCAAGC 58.549 50.000 3.32 0.00 0.00 4.01
271 272 2.203640 TGTGTCCTCAGGCTCCGT 60.204 61.111 0.00 0.00 0.00 4.69
290 302 1.005394 CGTTTGCTCCAGTACCGGT 60.005 57.895 13.98 13.98 0.00 5.28
350 362 4.916293 TCTGCATCGGCGGCATCC 62.916 66.667 10.53 0.00 46.35 3.51
374 386 0.391661 GATGGTGGATCGTGTGCTGT 60.392 55.000 0.00 0.00 0.00 4.40
392 404 1.449778 TGTTCGTGGTTCGTGGCAA 60.450 52.632 0.00 0.00 40.80 4.52
400 412 1.574702 GGTTCGTGGCAAGCAGGTAC 61.575 60.000 0.00 0.00 0.00 3.34
416 428 1.109609 GTACGGTTTCCTCCTCCGAT 58.890 55.000 9.75 0.00 46.05 4.18
425 437 2.933573 TCCTCCTCCGATGTCTTAGTC 58.066 52.381 0.00 0.00 0.00 2.59
442 457 2.047274 CGTGCGGGGTGTCAGATT 60.047 61.111 0.00 0.00 0.00 2.40
486 501 0.902531 TGTTCCCTCGGTCTGATTCC 59.097 55.000 0.00 0.00 0.00 3.01
489 504 1.952621 TCCCTCGGTCTGATTCCTTT 58.047 50.000 0.00 0.00 0.00 3.11
492 507 3.451178 TCCCTCGGTCTGATTCCTTTAAG 59.549 47.826 0.00 0.00 0.00 1.85
507 522 0.323360 TTAAGGGCAATGGCTTCGCT 60.323 50.000 6.78 0.00 40.87 4.93
509 524 1.598701 AAGGGCAATGGCTTCGCTTC 61.599 55.000 6.78 0.00 40.87 3.86
560 575 2.452295 CTGCATATCAGCGATGGAGT 57.548 50.000 0.00 0.00 37.81 3.85
578 593 0.788645 GTCGTGTCGAGCTCGTGTAC 60.789 60.000 33.33 26.30 36.23 2.90
616 631 2.600470 TTTTCCTTTTGTGGCTGCTG 57.400 45.000 0.00 0.00 0.00 4.41
671 686 3.186119 GTCAAGCTCAGAGGATTCTTCG 58.814 50.000 0.00 0.00 0.00 3.79
684 699 5.805728 AGGATTCTTCGGTCTTGTTTGTAT 58.194 37.500 0.00 0.00 0.00 2.29
700 715 9.959749 CTTGTTTGTATTTTTACTTCTTGGCTA 57.040 29.630 0.00 0.00 0.00 3.93
702 717 8.079809 TGTTTGTATTTTTACTTCTTGGCTAGC 58.920 33.333 6.04 6.04 0.00 3.42
704 719 4.965119 ATTTTTACTTCTTGGCTAGCGG 57.035 40.909 9.00 1.55 0.00 5.52
709 724 1.348036 ACTTCTTGGCTAGCGGTTCTT 59.652 47.619 9.00 0.00 0.00 2.52
720 735 0.383949 GCGGTTCTTTGTGCAAAGGA 59.616 50.000 20.39 12.19 45.80 3.36
814 829 2.410517 GCGAAGATTTGCGTTGACGTAA 60.411 45.455 2.97 2.97 41.86 3.18
821 836 1.493772 TGCGTTGACGTAAGGAAGTG 58.506 50.000 5.36 0.00 46.39 3.16
847 862 1.103803 TACAGCTCTACAAGGGCTCG 58.896 55.000 0.00 0.00 33.74 5.03
860 876 5.741011 ACAAGGGCTCGACTGAAAAATATA 58.259 37.500 0.00 0.00 0.00 0.86
863 879 7.012421 ACAAGGGCTCGACTGAAAAATATATTC 59.988 37.037 0.00 0.00 0.00 1.75
864 880 6.831976 AGGGCTCGACTGAAAAATATATTCT 58.168 36.000 0.00 0.00 0.00 2.40
866 882 8.429641 AGGGCTCGACTGAAAAATATATTCTTA 58.570 33.333 0.00 0.00 0.00 2.10
869 885 9.587461 GCTCGACTGAAAAATATATTCTTAAGC 57.413 33.333 0.00 0.00 0.00 3.09
1057 1078 4.438744 CCAAACTGGTGCGAATTCTAATCC 60.439 45.833 3.52 1.93 31.35 3.01
1117 1138 2.288518 GGACTGGATCTTGATCGCTACC 60.289 54.545 4.75 3.23 0.00 3.18
1175 1214 2.093658 AGTGCTCCCGATCGTATGTTTT 60.094 45.455 15.09 0.00 0.00 2.43
1177 1216 2.675844 TGCTCCCGATCGTATGTTTTTG 59.324 45.455 15.09 0.00 0.00 2.44
1191 1230 9.737427 TCGTATGTTTTTGCTTGAATCTTTTTA 57.263 25.926 0.00 0.00 0.00 1.52
1192 1231 9.993881 CGTATGTTTTTGCTTGAATCTTTTTAG 57.006 29.630 0.00 0.00 0.00 1.85
1196 1235 7.821846 TGTTTTTGCTTGAATCTTTTTAGTGGT 59.178 29.630 0.00 0.00 0.00 4.16
1197 1236 8.328146 GTTTTTGCTTGAATCTTTTTAGTGGTC 58.672 33.333 0.00 0.00 0.00 4.02
1198 1237 5.356882 TGCTTGAATCTTTTTAGTGGTCG 57.643 39.130 0.00 0.00 0.00 4.79
1199 1238 5.060506 TGCTTGAATCTTTTTAGTGGTCGA 58.939 37.500 0.00 0.00 0.00 4.20
1200 1239 5.179368 TGCTTGAATCTTTTTAGTGGTCGAG 59.821 40.000 0.00 0.00 0.00 4.04
1201 1240 5.179555 GCTTGAATCTTTTTAGTGGTCGAGT 59.820 40.000 0.00 0.00 0.00 4.18
1202 1241 6.539649 TTGAATCTTTTTAGTGGTCGAGTG 57.460 37.500 0.00 0.00 0.00 3.51
1203 1242 5.849510 TGAATCTTTTTAGTGGTCGAGTGA 58.150 37.500 0.00 0.00 0.00 3.41
1204 1243 6.285224 TGAATCTTTTTAGTGGTCGAGTGAA 58.715 36.000 0.00 0.00 0.00 3.18
1205 1244 6.202188 TGAATCTTTTTAGTGGTCGAGTGAAC 59.798 38.462 0.00 0.00 0.00 3.18
1206 1245 5.272283 TCTTTTTAGTGGTCGAGTGAACT 57.728 39.130 0.00 0.00 31.14 3.01
1208 1247 6.989659 TCTTTTTAGTGGTCGAGTGAACTAT 58.010 36.000 0.00 0.00 31.14 2.12
1209 1248 6.866770 TCTTTTTAGTGGTCGAGTGAACTATG 59.133 38.462 0.00 0.00 31.14 2.23
1210 1249 5.970317 TTTAGTGGTCGAGTGAACTATGA 57.030 39.130 0.00 0.00 31.14 2.15
1211 1250 3.851976 AGTGGTCGAGTGAACTATGAC 57.148 47.619 6.73 6.73 31.14 3.06
1216 1272 4.397103 TGGTCGAGTGAACTATGACGTTAT 59.603 41.667 0.00 0.00 34.26 1.89
1237 1293 8.321005 CGTTATGACGGCTAATAATATCATGTG 58.679 37.037 1.39 0.00 45.32 3.21
1270 1337 4.820775 TGCTAGGGAATTCTCCAGTAGAT 58.179 43.478 0.38 0.00 44.51 1.98
1271 1338 5.965486 TGCTAGGGAATTCTCCAGTAGATA 58.035 41.667 0.38 0.00 44.51 1.98
1309 1380 4.706962 AGCCACACTTTCTTTTTCAGTCTT 59.293 37.500 0.00 0.00 0.00 3.01
1330 1401 1.487142 TGTTAGCTTATTAGGGGCGCA 59.513 47.619 10.83 0.00 0.00 6.09
1332 1403 1.420430 TAGCTTATTAGGGGCGCAGT 58.580 50.000 10.83 0.00 0.00 4.40
1338 1409 3.792588 TATTAGGGGCGCAGTGCTTGG 62.793 57.143 14.33 0.00 45.43 3.61
1343 1414 2.980233 GCGCAGTGCTTGGGTCTT 60.980 61.111 14.33 0.00 41.52 3.01
1344 1415 1.671054 GCGCAGTGCTTGGGTCTTA 60.671 57.895 14.33 0.00 41.52 2.10
1346 1417 1.234821 CGCAGTGCTTGGGTCTTAAA 58.765 50.000 14.33 0.00 35.17 1.52
1347 1418 1.812571 CGCAGTGCTTGGGTCTTAAAT 59.187 47.619 14.33 0.00 35.17 1.40
1348 1419 3.006940 CGCAGTGCTTGGGTCTTAAATA 58.993 45.455 14.33 0.00 35.17 1.40
1350 1421 4.096382 CGCAGTGCTTGGGTCTTAAATATT 59.904 41.667 14.33 0.00 35.17 1.28
1351 1422 5.295787 CGCAGTGCTTGGGTCTTAAATATTA 59.704 40.000 14.33 0.00 35.17 0.98
1352 1423 6.495706 GCAGTGCTTGGGTCTTAAATATTAC 58.504 40.000 8.18 0.00 0.00 1.89
1353 1424 6.318900 GCAGTGCTTGGGTCTTAAATATTACT 59.681 38.462 8.18 0.00 0.00 2.24
1354 1425 7.467403 GCAGTGCTTGGGTCTTAAATATTACTC 60.467 40.741 8.18 0.00 0.00 2.59
1362 1433 8.931568 TGGGTCTTAAATATTACTCCTAACTCC 58.068 37.037 0.00 0.00 0.00 3.85
1378 1449 2.283173 CCTGTCTTTGGGGGTGCC 60.283 66.667 0.00 0.00 0.00 5.01
1441 1512 8.196771 TCTTGACTTAAATGTTTCACAAGCATT 58.803 29.630 0.00 0.00 35.15 3.56
1442 1513 9.462174 CTTGACTTAAATGTTTCACAAGCATTA 57.538 29.630 0.00 0.00 33.13 1.90
1444 1515 9.624697 TGACTTAAATGTTTCACAAGCATTATC 57.375 29.630 0.00 0.00 33.13 1.75
1463 1534 8.922676 GCATTATCATTTTGAGCTCATAAATGG 58.077 33.333 34.01 26.47 36.36 3.16
1464 1535 8.922676 CATTATCATTTTGAGCTCATAAATGGC 58.077 33.333 34.01 9.37 36.36 4.40
1467 1538 5.889853 TCATTTTGAGCTCATAAATGGCTCT 59.110 36.000 34.01 16.71 44.33 4.09
1539 1613 6.750039 CGCAAAATTATGTCCCGAGTATTTTT 59.250 34.615 0.00 0.00 0.00 1.94
1540 1614 7.911205 CGCAAAATTATGTCCCGAGTATTTTTA 59.089 33.333 0.00 0.00 0.00 1.52
1541 1615 9.744468 GCAAAATTATGTCCCGAGTATTTTTAT 57.256 29.630 0.00 0.00 0.00 1.40
1635 1709 4.481930 TGTTTTACTGTGCTCGGATTTG 57.518 40.909 0.68 0.00 0.00 2.32
1727 1802 0.033504 GAGTTCCAGGCAAGTCGTCA 59.966 55.000 0.00 0.00 0.00 4.35
1802 1878 9.754382 AAATGATCATTGTATTGGTCTATTTGC 57.246 29.630 21.39 0.00 0.00 3.68
1844 1920 1.197949 GCGGCTTTCTTCTCTCAAACC 59.802 52.381 0.00 0.00 0.00 3.27
1996 2072 5.186992 ACCAGGTTAGTAAAATGGAATTGGC 59.813 40.000 17.48 0.00 36.10 4.52
2006 2082 5.823861 AAATGGAATTGGCTTACCTGTTT 57.176 34.783 0.00 0.00 36.10 2.83
2054 2130 9.347934 CGATGACAGTCTCCTATTATTTACATC 57.652 37.037 1.31 0.00 0.00 3.06
2082 2158 2.702261 CTTTGGCCAATGAACAATGGG 58.298 47.619 23.59 0.11 37.19 4.00
2120 2196 7.224753 ACAGTAGTATGTTTGAGTTGTGAGTTG 59.775 37.037 0.00 0.00 0.00 3.16
2143 2219 5.046950 TGAATTGGGGAATTAAAAGGGAACG 60.047 40.000 0.00 0.00 0.00 3.95
2149 2225 5.336213 GGGGAATTAAAAGGGAACGAAGAAC 60.336 44.000 0.00 0.00 0.00 3.01
2152 2228 7.204604 GGAATTAAAAGGGAACGAAGAACAAA 58.795 34.615 0.00 0.00 0.00 2.83
2158 2234 4.969484 AGGGAACGAAGAACAAATGTAGT 58.031 39.130 0.00 0.00 0.00 2.73
2216 2295 3.371285 GGCGTGATTTAGTTCTCAGAACC 59.629 47.826 14.27 0.00 0.00 3.62
2222 2301 6.149640 GTGATTTAGTTCTCAGAACCCCTTTC 59.850 42.308 14.27 6.12 33.95 2.62
2243 2322 3.059166 CAAAAATTTGTGGAGGGAAGCG 58.941 45.455 0.00 0.00 33.59 4.68
2258 2345 3.443045 GCGATGGGCACTTGGGTG 61.443 66.667 0.00 0.00 45.53 4.61
2281 2368 6.473455 GTGAAATCTGACAACTTGGTTTCTTG 59.527 38.462 0.00 0.00 0.00 3.02
2317 2404 8.110271 TCTGTTCCAAGAGAAAGAGAGATAGTA 58.890 37.037 0.00 0.00 35.85 1.82
2402 2490 2.373169 AGAGTGGATGCCTGTGAAGAAA 59.627 45.455 0.00 0.00 0.00 2.52
2403 2491 3.149196 GAGTGGATGCCTGTGAAGAAAA 58.851 45.455 0.00 0.00 0.00 2.29
2419 2507 0.605589 AAAAGCAGGGTGCCGTACTC 60.606 55.000 0.00 0.00 46.52 2.59
2425 2513 1.416401 CAGGGTGCCGTACTCCATAAT 59.584 52.381 0.00 0.00 33.29 1.28
2430 2518 4.321527 GGGTGCCGTACTCCATAATAGTAC 60.322 50.000 0.00 0.00 43.81 2.73
2433 2521 6.453092 GTGCCGTACTCCATAATAGTACAAT 58.547 40.000 12.41 0.00 46.32 2.71
2434 2522 7.309377 GGTGCCGTACTCCATAATAGTACAATA 60.309 40.741 12.41 0.00 46.32 1.90
2455 2544 2.534903 GCAGGGGCTACGATTTCGC 61.535 63.158 0.00 0.00 39.06 4.70
2516 2605 7.434013 GGTGATGGTTAAGTTTGTTGTTTACTG 59.566 37.037 0.00 0.00 0.00 2.74
2553 2643 5.163258 GGGTCTTGGTGAGAACATGATAGAT 60.163 44.000 0.00 0.00 44.32 1.98
2616 2706 8.138365 TGAGCTTTTAACACACTTAAGTACTG 57.862 34.615 8.04 9.14 0.00 2.74
2738 2838 5.345202 GGCATTGATAATACTTAGTCGACGG 59.655 44.000 10.46 7.26 0.00 4.79
2748 2848 3.691118 ACTTAGTCGACGGCTAATACACA 59.309 43.478 21.22 0.00 0.00 3.72
2756 2856 3.973657 ACGGCTAATACACAGTATTCCG 58.026 45.455 19.74 19.74 40.09 4.30
2815 2915 3.546271 GGTGCTGTTTCAACGAGTTTTTC 59.454 43.478 0.00 0.00 0.00 2.29
2849 2949 6.239036 GGAACCTCTTCTGTTTTAGCATGTTT 60.239 38.462 0.00 0.00 0.00 2.83
2885 2988 2.512485 TTGTGTTTGCTGCTTCATGG 57.488 45.000 0.00 0.00 0.00 3.66
2886 2989 0.675083 TGTGTTTGCTGCTTCATGGG 59.325 50.000 0.00 0.00 0.00 4.00
2887 2990 0.675633 GTGTTTGCTGCTTCATGGGT 59.324 50.000 0.00 0.00 0.00 4.51
2888 2991 1.885887 GTGTTTGCTGCTTCATGGGTA 59.114 47.619 0.00 0.00 0.00 3.69
2889 2992 1.885887 TGTTTGCTGCTTCATGGGTAC 59.114 47.619 0.00 0.00 0.00 3.34
2890 2993 1.885887 GTTTGCTGCTTCATGGGTACA 59.114 47.619 0.00 0.00 0.00 2.90
2891 2994 2.493278 GTTTGCTGCTTCATGGGTACAT 59.507 45.455 0.00 0.00 37.99 2.29
3150 3258 4.207891 TGACTAACCAGCTCCTCAAATC 57.792 45.455 0.00 0.00 0.00 2.17
3154 3262 2.100605 ACCAGCTCCTCAAATCGTTC 57.899 50.000 0.00 0.00 0.00 3.95
3245 3353 7.608761 AGTTTGAGTCACTTTAGGTTTGTGTTA 59.391 33.333 0.00 0.00 33.82 2.41
3272 3380 6.020440 CCACATGTTTATGAAATTAAGCTGCG 60.020 38.462 0.00 0.00 37.73 5.18
3286 3394 3.831715 AGCTGCGTTTTATTTGGTCTC 57.168 42.857 0.00 0.00 0.00 3.36
3305 3413 6.153680 TGGTCTCCACACTTTGTTTTGTTTAT 59.846 34.615 0.00 0.00 0.00 1.40
3488 3596 8.680903 AGTGTCAAAAATGCTCTTATATTCTGG 58.319 33.333 0.00 0.00 0.00 3.86
3489 3597 7.917505 GTGTCAAAAATGCTCTTATATTCTGGG 59.082 37.037 0.00 0.00 0.00 4.45
3490 3598 7.833682 TGTCAAAAATGCTCTTATATTCTGGGA 59.166 33.333 0.00 0.00 0.00 4.37
3491 3599 8.131731 GTCAAAAATGCTCTTATATTCTGGGAC 58.868 37.037 0.00 0.00 0.00 4.46
3492 3600 6.867662 AAAATGCTCTTATATTCTGGGACG 57.132 37.500 0.00 0.00 0.00 4.79
3493 3601 4.543590 ATGCTCTTATATTCTGGGACGG 57.456 45.455 0.00 0.00 0.00 4.79
3494 3602 3.572642 TGCTCTTATATTCTGGGACGGA 58.427 45.455 0.00 0.00 45.11 4.69
3549 3657 5.746245 TGAAAGGTTTTGTCGCTTGTTAATG 59.254 36.000 0.00 0.00 0.00 1.90
3562 3670 7.908082 GTCGCTTGTTAATGCAGACATATTAAA 59.092 33.333 0.00 0.00 34.62 1.52
3668 3776 7.288158 GGAGGTTCAAATAGAGGTATGTAGTCT 59.712 40.741 0.00 0.00 0.00 3.24
3718 3826 4.959839 TCCCAGTCTAGTATTGTACATGCA 59.040 41.667 0.00 0.00 0.00 3.96
3719 3827 5.602561 TCCCAGTCTAGTATTGTACATGCAT 59.397 40.000 0.00 0.00 0.00 3.96
3720 3828 6.099701 TCCCAGTCTAGTATTGTACATGCATT 59.900 38.462 0.00 0.00 0.00 3.56
3751 3859 8.589335 TTTGTCTATGTTTCACTGTTCTACTC 57.411 34.615 0.00 0.00 0.00 2.59
4001 4112 9.736023 CTTATAATTTGGAGGCAAATACTTGAC 57.264 33.333 0.00 0.00 41.37 3.18
4017 4128 5.591643 ACTTGACATTACACGTTCACATC 57.408 39.130 0.00 0.00 0.00 3.06
4044 4158 5.741011 AGTTTTCACAACTTCCTACTGTGA 58.259 37.500 0.16 0.16 45.78 3.58
4111 4267 3.826466 CCTTGCTTGCTTTAGTTACAGC 58.174 45.455 0.00 0.00 36.49 4.40
4170 4326 5.893687 TGTATTTATGTTTCCTGCAGCATG 58.106 37.500 8.66 0.00 40.87 4.06
4178 4939 4.764308 TGTTTCCTGCAGCATGTAAACATA 59.236 37.500 18.88 5.30 39.31 2.29
4258 5020 5.451908 CACGTTCATGCTATCTGTTTTGTT 58.548 37.500 0.00 0.00 0.00 2.83
4267 5029 7.692908 TGCTATCTGTTTTGTTTAGTTTTGC 57.307 32.000 0.00 0.00 0.00 3.68
4276 5038 7.117812 TGTTTTGTTTAGTTTTGCGGAAATTGA 59.882 29.630 1.94 0.00 0.00 2.57
4287 5049 5.554822 TGCGGAAATTGATTTGGTAGTAC 57.445 39.130 0.00 0.00 0.00 2.73
4288 5050 5.250200 TGCGGAAATTGATTTGGTAGTACT 58.750 37.500 0.00 0.00 0.00 2.73
4289 5051 6.408035 TGCGGAAATTGATTTGGTAGTACTA 58.592 36.000 0.00 0.00 0.00 1.82
4290 5052 7.051623 TGCGGAAATTGATTTGGTAGTACTAT 58.948 34.615 5.75 0.00 0.00 2.12
4291 5053 7.554835 TGCGGAAATTGATTTGGTAGTACTATT 59.445 33.333 5.75 0.00 0.00 1.73
4292 5054 9.048446 GCGGAAATTGATTTGGTAGTACTATTA 57.952 33.333 5.75 0.00 0.00 0.98
4346 5108 3.287867 AATGATAAGGCACACTCCCTG 57.712 47.619 0.00 0.00 31.73 4.45
4442 5204 1.828979 TTGGCGAAAATACCCCTGAC 58.171 50.000 0.00 0.00 0.00 3.51
4462 5224 0.772124 TCCACAGCCCTTTCCTCCTT 60.772 55.000 0.00 0.00 0.00 3.36
4488 5250 3.134985 TCATGTGCCGGCTTAATTACCTA 59.865 43.478 29.70 0.00 0.00 3.08
4506 5268 2.356125 CCTAGTGCACTAACAGCCCAAT 60.356 50.000 25.95 0.00 0.00 3.16
4546 5308 3.761752 GGAAAATTAAGTACAGCCCAGCA 59.238 43.478 0.00 0.00 0.00 4.41
4649 5415 7.649306 GCATATGAGAATTTATTGGCGTTTCTT 59.351 33.333 6.97 0.00 0.00 2.52
4656 5422 8.334632 AGAATTTATTGGCGTTTCTTGTTTTTG 58.665 29.630 0.00 0.00 0.00 2.44
4725 5493 7.675062 ACTAGCAGGGAATATGAAGTTATGAG 58.325 38.462 0.00 0.00 0.00 2.90
4766 5534 9.504710 CATTTTCACATCTCTCTTTTCATGATC 57.495 33.333 0.00 0.00 0.00 2.92
4907 5676 1.684450 TGTTTCTCACGTAGCACCAGA 59.316 47.619 0.00 0.00 0.00 3.86
4939 5708 0.098376 GCAAGAGAGCTGATTTGGCG 59.902 55.000 0.00 0.00 34.52 5.69
4943 5712 3.105659 GAGCTGATTTGGCGCTCC 58.894 61.111 7.64 0.00 43.22 4.70
4998 5767 1.067354 CCATGCCAAGGAAAGCAAGAC 60.067 52.381 0.00 0.00 43.36 3.01
5161 6128 3.117738 AGGGAGTATGGAAGCAGGAAATG 60.118 47.826 0.00 0.00 0.00 2.32
5165 6132 5.121380 AGTATGGAAGCAGGAAATGTGAT 57.879 39.130 0.00 0.00 0.00 3.06
5199 6166 3.441572 AGAATGTGCTACTTCATGTTGCC 59.558 43.478 0.00 0.00 44.65 4.52
5276 6244 9.045223 TGTTCTATATTTATGTGTGACATGAGC 57.955 33.333 0.00 0.00 39.53 4.26
5338 6306 2.376518 TGGCCTCTTCTTCATGGAAACT 59.623 45.455 3.32 0.00 0.00 2.66
5404 6372 4.974645 TGGTGAGTCCACTTTCTATTGT 57.025 40.909 0.00 0.00 41.93 2.71
5405 6373 5.304686 TGGTGAGTCCACTTTCTATTGTT 57.695 39.130 0.00 0.00 41.93 2.83
5406 6374 5.690865 TGGTGAGTCCACTTTCTATTGTTT 58.309 37.500 0.00 0.00 41.93 2.83
5407 6375 5.530915 TGGTGAGTCCACTTTCTATTGTTTG 59.469 40.000 0.00 0.00 41.93 2.93
5408 6376 5.531287 GGTGAGTCCACTTTCTATTGTTTGT 59.469 40.000 0.00 0.00 42.77 2.83
5409 6377 6.039382 GGTGAGTCCACTTTCTATTGTTTGTT 59.961 38.462 0.00 0.00 42.77 2.83
5460 6428 4.624364 CCGCAGTGCAGTCCACCA 62.624 66.667 16.83 0.00 45.83 4.17
5492 6461 2.637382 CCACCTTTTGCCCCTTAACATT 59.363 45.455 0.00 0.00 0.00 2.71
5550 6621 1.026584 CATCGATTCCCATTGCAGCA 58.973 50.000 0.00 0.00 0.00 4.41
5730 6801 5.300792 GGAGAGGAATCTCGACAAACTATCT 59.699 44.000 0.00 0.00 44.47 1.98
5768 6839 7.415592 TGATCCTGTGCCTTATCTGATATAG 57.584 40.000 0.00 0.13 0.00 1.31
5838 6910 5.833406 TTGTCATGTAAATGCCCATACTG 57.167 39.130 0.00 0.00 0.00 2.74
5846 6918 0.855598 ATGCCCATACTGGAATGCCT 59.144 50.000 0.00 0.00 40.96 4.75
5847 6919 0.630673 TGCCCATACTGGAATGCCTT 59.369 50.000 0.00 0.00 40.96 4.35
5849 6921 2.110578 GCCCATACTGGAATGCCTTTT 58.889 47.619 0.00 0.00 40.96 2.27
5856 6928 6.718454 CCATACTGGAATGCCTTTTCAGATAT 59.282 38.462 10.84 4.05 40.96 1.63
5857 6929 7.094463 CCATACTGGAATGCCTTTTCAGATATC 60.094 40.741 10.84 0.00 40.96 1.63
5858 6930 4.818546 ACTGGAATGCCTTTTCAGATATCG 59.181 41.667 10.84 0.00 34.31 2.92
5859 6931 3.565482 TGGAATGCCTTTTCAGATATCGC 59.435 43.478 0.00 0.00 34.31 4.58
5860 6932 3.565482 GGAATGCCTTTTCAGATATCGCA 59.435 43.478 0.00 0.00 0.00 5.10
5861 6933 4.036734 GGAATGCCTTTTCAGATATCGCAA 59.963 41.667 3.78 0.00 0.00 4.85
5862 6934 4.825546 ATGCCTTTTCAGATATCGCAAG 57.174 40.909 3.78 2.48 0.00 4.01
5863 6935 3.609853 TGCCTTTTCAGATATCGCAAGT 58.390 40.909 0.00 0.00 39.48 3.16
5864 6936 3.374988 TGCCTTTTCAGATATCGCAAGTG 59.625 43.478 0.00 0.00 39.48 3.16
5865 6937 3.623060 GCCTTTTCAGATATCGCAAGTGA 59.377 43.478 0.00 0.00 39.48 3.41
5866 6938 4.260538 GCCTTTTCAGATATCGCAAGTGAG 60.261 45.833 0.00 0.00 39.48 3.51
5867 6939 5.111989 CCTTTTCAGATATCGCAAGTGAGA 58.888 41.667 0.00 0.00 39.48 3.27
5868 6940 5.757320 CCTTTTCAGATATCGCAAGTGAGAT 59.243 40.000 3.04 3.04 38.17 2.75
5869 6941 6.925718 CCTTTTCAGATATCGCAAGTGAGATA 59.074 38.462 7.13 7.13 40.23 1.98
5870 6942 7.095857 CCTTTTCAGATATCGCAAGTGAGATAC 60.096 40.741 6.87 2.93 39.10 2.24
5871 6943 5.378292 TCAGATATCGCAAGTGAGATACC 57.622 43.478 6.87 0.00 39.10 2.73
5872 6944 4.827284 TCAGATATCGCAAGTGAGATACCA 59.173 41.667 6.87 0.00 39.10 3.25
5873 6945 5.301805 TCAGATATCGCAAGTGAGATACCAA 59.698 40.000 6.87 0.00 39.10 3.67
5874 6946 5.985530 CAGATATCGCAAGTGAGATACCAAA 59.014 40.000 6.87 0.00 39.10 3.28
5875 6947 6.479990 CAGATATCGCAAGTGAGATACCAAAA 59.520 38.462 6.87 0.00 39.10 2.44
5876 6948 7.172190 CAGATATCGCAAGTGAGATACCAAAAT 59.828 37.037 6.87 0.00 39.10 1.82
5879 6951 4.092821 TCGCAAGTGAGATACCAAAATTCG 59.907 41.667 0.00 0.00 39.48 3.34
5884 6956 6.663944 AGTGAGATACCAAAATTCGTAAGC 57.336 37.500 0.00 0.00 37.18 3.09
5905 6977 2.701107 GAGAGTTACCTCCAAAGTGGC 58.299 52.381 0.00 0.00 38.58 5.01
5917 6989 2.624838 CCAAAGTGGCTTGATTGTGTCT 59.375 45.455 0.00 0.00 0.00 3.41
5918 6990 3.551454 CCAAAGTGGCTTGATTGTGTCTG 60.551 47.826 0.00 0.00 0.00 3.51
5920 6992 1.202855 AGTGGCTTGATTGTGTCTGCT 60.203 47.619 0.00 0.00 0.00 4.24
5921 6993 1.198637 GTGGCTTGATTGTGTCTGCTC 59.801 52.381 0.00 0.00 0.00 4.26
5924 7008 1.457346 CTTGATTGTGTCTGCTCCCC 58.543 55.000 0.00 0.00 0.00 4.81
5948 7032 6.652481 CCAAGTTTGATGTTCAGAGAGTATGT 59.348 38.462 0.00 0.00 0.00 2.29
5955 7039 5.073311 TGTTCAGAGAGTATGTAACAGGC 57.927 43.478 0.00 0.00 0.00 4.85
6013 7101 7.264947 GTTGGAATTTTATGTTCGATGGGATT 58.735 34.615 0.00 0.00 0.00 3.01
6024 7112 5.183228 GTTCGATGGGATTAGTTTGGAGAA 58.817 41.667 0.00 0.00 0.00 2.87
6025 7113 5.630415 TCGATGGGATTAGTTTGGAGAAT 57.370 39.130 0.00 0.00 0.00 2.40
6026 7114 6.740944 TCGATGGGATTAGTTTGGAGAATA 57.259 37.500 0.00 0.00 0.00 1.75
6082 7170 8.104222 GCGAAGAGCGAATATAACAAAATTTT 57.896 30.769 0.00 0.00 44.57 1.82
6174 7265 6.964464 TCCCAGGAATAACAACAGCTTATAA 58.036 36.000 0.00 0.00 0.00 0.98
6440 7543 0.668535 GCAGGAACACCAACCAAGTC 59.331 55.000 0.00 0.00 0.00 3.01
6537 7640 1.493022 ACAGCAGGAACACCCAGTTAA 59.507 47.619 0.00 0.00 41.51 2.01
6553 7656 4.130118 CAGTTAAGTTGCACTTCTGGTCT 58.870 43.478 5.04 0.00 39.51 3.85
6573 7677 3.834813 TCTGCAGAGCCTAATCCGATTAT 59.165 43.478 13.74 0.00 0.00 1.28
6597 7701 5.108385 ACCATTTCGACAGTGTTTTCATC 57.892 39.130 0.00 0.00 0.00 2.92
6616 7720 5.392995 TCATCACCCCTTTCAAAATCTTCA 58.607 37.500 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 0.179217 CGTCCAACATGCATCGTGTG 60.179 55.000 0.00 0.00 33.54 3.82
8 9 0.320334 TCGTCCAACATGCATCGTGT 60.320 50.000 0.00 0.00 34.83 4.49
9 10 1.009078 ATCGTCCAACATGCATCGTG 58.991 50.000 0.00 0.00 0.00 4.35
10 11 1.398041 CAATCGTCCAACATGCATCGT 59.602 47.619 0.00 0.00 0.00 3.73
11 12 1.857204 GCAATCGTCCAACATGCATCG 60.857 52.381 0.00 0.00 37.00 3.84
12 13 1.402968 AGCAATCGTCCAACATGCATC 59.597 47.619 0.00 0.00 39.42 3.91
13 14 1.133598 CAGCAATCGTCCAACATGCAT 59.866 47.619 0.00 0.00 39.42 3.96
14 15 0.522626 CAGCAATCGTCCAACATGCA 59.477 50.000 0.00 0.00 39.42 3.96
15 16 0.179156 CCAGCAATCGTCCAACATGC 60.179 55.000 0.00 0.00 37.28 4.06
16 17 1.131126 GTCCAGCAATCGTCCAACATG 59.869 52.381 0.00 0.00 0.00 3.21
17 18 1.453155 GTCCAGCAATCGTCCAACAT 58.547 50.000 0.00 0.00 0.00 2.71
18 19 0.948623 CGTCCAGCAATCGTCCAACA 60.949 55.000 0.00 0.00 0.00 3.33
19 20 0.669318 TCGTCCAGCAATCGTCCAAC 60.669 55.000 0.00 0.00 0.00 3.77
20 21 0.669318 GTCGTCCAGCAATCGTCCAA 60.669 55.000 0.00 0.00 0.00 3.53
21 22 1.080093 GTCGTCCAGCAATCGTCCA 60.080 57.895 0.00 0.00 0.00 4.02
22 23 1.078759 CTGTCGTCCAGCAATCGTCC 61.079 60.000 0.00 0.00 33.59 4.79
23 24 0.388649 ACTGTCGTCCAGCAATCGTC 60.389 55.000 5.03 0.00 45.68 4.20
24 25 0.667487 CACTGTCGTCCAGCAATCGT 60.667 55.000 5.03 0.00 45.68 3.73
25 26 1.959899 GCACTGTCGTCCAGCAATCG 61.960 60.000 5.03 0.00 45.68 3.34
26 27 0.950555 TGCACTGTCGTCCAGCAATC 60.951 55.000 5.03 0.00 45.68 2.67
27 28 0.534877 TTGCACTGTCGTCCAGCAAT 60.535 50.000 0.00 0.00 45.68 3.56
28 29 0.746204 TTTGCACTGTCGTCCAGCAA 60.746 50.000 0.00 0.00 45.68 3.91
29 30 0.534877 ATTTGCACTGTCGTCCAGCA 60.535 50.000 5.03 0.00 45.68 4.41
30 31 0.166814 GATTTGCACTGTCGTCCAGC 59.833 55.000 5.03 0.00 45.68 4.85
32 33 1.069978 TCTGATTTGCACTGTCGTCCA 59.930 47.619 0.00 0.00 0.00 4.02
33 34 1.461127 GTCTGATTTGCACTGTCGTCC 59.539 52.381 0.00 0.00 0.00 4.79
34 35 1.461127 GGTCTGATTTGCACTGTCGTC 59.539 52.381 0.00 0.00 0.00 4.20
35 36 1.202639 TGGTCTGATTTGCACTGTCGT 60.203 47.619 0.00 0.00 0.00 4.34
36 37 1.511850 TGGTCTGATTTGCACTGTCG 58.488 50.000 0.00 0.00 0.00 4.35
37 38 2.421424 GGATGGTCTGATTTGCACTGTC 59.579 50.000 0.00 0.00 0.00 3.51
38 39 2.224843 TGGATGGTCTGATTTGCACTGT 60.225 45.455 0.00 0.00 0.00 3.55
39 40 2.439409 TGGATGGTCTGATTTGCACTG 58.561 47.619 0.00 0.00 0.00 3.66
40 41 2.885135 TGGATGGTCTGATTTGCACT 57.115 45.000 0.00 0.00 0.00 4.40
41 42 2.480759 GCATGGATGGTCTGATTTGCAC 60.481 50.000 0.00 0.00 0.00 4.57
42 43 1.752498 GCATGGATGGTCTGATTTGCA 59.248 47.619 0.00 0.00 0.00 4.08
43 44 1.752498 TGCATGGATGGTCTGATTTGC 59.248 47.619 0.00 0.00 0.00 3.68
44 45 3.732774 CGTTGCATGGATGGTCTGATTTG 60.733 47.826 0.00 0.00 0.00 2.32
45 46 2.424601 CGTTGCATGGATGGTCTGATTT 59.575 45.455 0.00 0.00 0.00 2.17
46 47 2.019249 CGTTGCATGGATGGTCTGATT 58.981 47.619 0.00 0.00 0.00 2.57
47 48 1.671979 CGTTGCATGGATGGTCTGAT 58.328 50.000 0.00 0.00 0.00 2.90
48 49 0.392863 CCGTTGCATGGATGGTCTGA 60.393 55.000 0.00 0.00 0.00 3.27
49 50 0.392863 TCCGTTGCATGGATGGTCTG 60.393 55.000 4.16 0.00 0.00 3.51
50 51 0.392998 GTCCGTTGCATGGATGGTCT 60.393 55.000 11.02 0.00 35.40 3.85
51 52 0.392998 AGTCCGTTGCATGGATGGTC 60.393 55.000 11.02 0.00 35.40 4.02
52 53 0.908910 TAGTCCGTTGCATGGATGGT 59.091 50.000 11.02 3.22 35.40 3.55
53 54 1.586422 CTAGTCCGTTGCATGGATGG 58.414 55.000 11.02 0.13 35.40 3.51
54 55 0.940126 GCTAGTCCGTTGCATGGATG 59.060 55.000 11.02 6.61 35.40 3.51
55 56 0.833287 AGCTAGTCCGTTGCATGGAT 59.167 50.000 11.02 4.26 35.40 3.41
56 57 0.108186 CAGCTAGTCCGTTGCATGGA 60.108 55.000 4.16 4.16 0.00 3.41
57 58 1.709147 GCAGCTAGTCCGTTGCATGG 61.709 60.000 0.00 0.00 40.32 3.66
58 59 1.020861 TGCAGCTAGTCCGTTGCATG 61.021 55.000 0.00 0.00 44.41 4.06
59 60 1.296392 TGCAGCTAGTCCGTTGCAT 59.704 52.632 0.00 0.00 44.41 3.96
60 61 0.321564 ATTGCAGCTAGTCCGTTGCA 60.322 50.000 0.00 0.00 46.93 4.08
61 62 1.327764 GTATTGCAGCTAGTCCGTTGC 59.672 52.381 0.00 0.00 40.89 4.17
62 63 2.604914 CTGTATTGCAGCTAGTCCGTTG 59.395 50.000 0.00 0.00 38.52 4.10
63 64 2.893637 CTGTATTGCAGCTAGTCCGTT 58.106 47.619 0.00 0.00 38.52 4.44
64 65 2.586258 CTGTATTGCAGCTAGTCCGT 57.414 50.000 0.00 0.00 38.52 4.69
74 75 4.708909 TGTTAATCCATTGGCTGTATTGCA 59.291 37.500 0.00 0.00 34.04 4.08
75 76 5.261209 TGTTAATCCATTGGCTGTATTGC 57.739 39.130 0.00 0.00 0.00 3.56
76 77 7.964559 CGATATGTTAATCCATTGGCTGTATTG 59.035 37.037 0.00 0.00 0.00 1.90
77 78 7.665559 ACGATATGTTAATCCATTGGCTGTATT 59.334 33.333 0.00 0.00 0.00 1.89
78 79 7.119699 CACGATATGTTAATCCATTGGCTGTAT 59.880 37.037 0.00 0.00 0.00 2.29
79 80 6.426633 CACGATATGTTAATCCATTGGCTGTA 59.573 38.462 0.00 0.00 0.00 2.74
80 81 5.239306 CACGATATGTTAATCCATTGGCTGT 59.761 40.000 0.00 0.00 0.00 4.40
81 82 5.239306 ACACGATATGTTAATCCATTGGCTG 59.761 40.000 0.00 0.00 38.98 4.85
82 83 5.239306 CACACGATATGTTAATCCATTGGCT 59.761 40.000 0.00 0.00 40.64 4.75
83 84 5.008613 ACACACGATATGTTAATCCATTGGC 59.991 40.000 0.00 0.00 40.64 4.52
84 85 6.259829 TCACACACGATATGTTAATCCATTGG 59.740 38.462 0.00 0.00 40.64 3.16
85 86 7.245419 TCACACACGATATGTTAATCCATTG 57.755 36.000 0.00 0.00 40.64 2.82
86 87 7.857734 TTCACACACGATATGTTAATCCATT 57.142 32.000 0.00 0.00 40.64 3.16
87 88 7.095649 CGATTCACACACGATATGTTAATCCAT 60.096 37.037 14.11 0.00 40.64 3.41
88 89 6.200097 CGATTCACACACGATATGTTAATCCA 59.800 38.462 14.11 0.00 40.64 3.41
89 90 6.200286 ACGATTCACACACGATATGTTAATCC 59.800 38.462 14.11 4.17 40.64 3.01
90 91 7.161829 ACGATTCACACACGATATGTTAATC 57.838 36.000 11.73 11.73 40.64 1.75
91 92 6.200286 GGACGATTCACACACGATATGTTAAT 59.800 38.462 0.00 0.00 40.64 1.40
92 93 5.517411 GGACGATTCACACACGATATGTTAA 59.483 40.000 0.00 0.00 40.64 2.01
93 94 5.038683 GGACGATTCACACACGATATGTTA 58.961 41.667 0.00 0.00 40.64 2.41
94 95 3.863424 GGACGATTCACACACGATATGTT 59.137 43.478 0.00 0.00 40.64 2.71
95 96 3.119280 TGGACGATTCACACACGATATGT 60.119 43.478 0.00 0.00 44.81 2.29
96 97 3.443976 TGGACGATTCACACACGATATG 58.556 45.455 0.00 0.00 0.00 1.78
97 98 3.706698 CTGGACGATTCACACACGATAT 58.293 45.455 0.00 0.00 0.00 1.63
98 99 2.734175 GCTGGACGATTCACACACGATA 60.734 50.000 0.00 0.00 0.00 2.92
99 100 1.996292 CTGGACGATTCACACACGAT 58.004 50.000 0.00 0.00 0.00 3.73
100 101 0.666274 GCTGGACGATTCACACACGA 60.666 55.000 0.00 0.00 0.00 4.35
101 102 0.943835 TGCTGGACGATTCACACACG 60.944 55.000 0.00 0.00 0.00 4.49
102 103 0.792640 CTGCTGGACGATTCACACAC 59.207 55.000 0.00 0.00 0.00 3.82
103 104 0.320683 CCTGCTGGACGATTCACACA 60.321 55.000 2.92 0.00 34.57 3.72
104 105 1.639298 GCCTGCTGGACGATTCACAC 61.639 60.000 14.77 0.00 34.57 3.82
105 106 1.375908 GCCTGCTGGACGATTCACA 60.376 57.895 14.77 0.00 34.57 3.58
106 107 0.745845 ATGCCTGCTGGACGATTCAC 60.746 55.000 14.77 0.00 34.57 3.18
107 108 0.462581 GATGCCTGCTGGACGATTCA 60.463 55.000 14.77 0.58 34.57 2.57
108 109 1.493950 CGATGCCTGCTGGACGATTC 61.494 60.000 14.77 1.30 34.57 2.52
109 110 1.522355 CGATGCCTGCTGGACGATT 60.522 57.895 14.77 0.00 34.57 3.34
110 111 2.107750 CGATGCCTGCTGGACGAT 59.892 61.111 14.77 1.34 34.57 3.73
111 112 2.449031 AAACGATGCCTGCTGGACGA 62.449 55.000 22.54 5.41 34.57 4.20
112 113 2.034879 AAACGATGCCTGCTGGACG 61.035 57.895 14.77 16.34 34.57 4.79
113 114 1.237285 ACAAACGATGCCTGCTGGAC 61.237 55.000 14.77 5.49 34.57 4.02
114 115 1.073025 ACAAACGATGCCTGCTGGA 59.927 52.632 14.77 0.00 34.57 3.86
115 116 1.210931 CACAAACGATGCCTGCTGG 59.789 57.895 5.03 5.03 0.00 4.85
116 117 0.592637 TTCACAAACGATGCCTGCTG 59.407 50.000 0.00 0.00 0.00 4.41
117 118 0.877071 CTTCACAAACGATGCCTGCT 59.123 50.000 0.00 0.00 0.00 4.24
118 119 0.593128 ACTTCACAAACGATGCCTGC 59.407 50.000 0.00 0.00 0.00 4.85
119 120 3.067106 ACTACTTCACAAACGATGCCTG 58.933 45.455 0.00 0.00 0.00 4.85
120 121 3.402628 ACTACTTCACAAACGATGCCT 57.597 42.857 0.00 0.00 0.00 4.75
121 122 4.464112 GAAACTACTTCACAAACGATGCC 58.536 43.478 0.00 0.00 33.86 4.40
122 123 4.213482 AGGAAACTACTTCACAAACGATGC 59.787 41.667 0.00 0.00 40.61 3.91
123 124 5.924475 AGGAAACTACTTCACAAACGATG 57.076 39.130 0.00 0.00 40.61 3.84
124 125 6.766467 AGAAAGGAAACTACTTCACAAACGAT 59.234 34.615 0.00 0.00 42.68 3.73
125 126 6.110707 AGAAAGGAAACTACTTCACAAACGA 58.889 36.000 0.00 0.00 42.68 3.85
126 127 6.359480 AGAAAGGAAACTACTTCACAAACG 57.641 37.500 0.00 0.00 42.68 3.60
129 130 9.720769 CCTATAAGAAAGGAAACTACTTCACAA 57.279 33.333 0.00 0.00 42.68 3.33
130 131 8.877195 ACCTATAAGAAAGGAAACTACTTCACA 58.123 33.333 0.00 0.00 42.68 3.58
138 139 9.070210 AGGGAAATACCTATAAGAAAGGAAACT 57.930 33.333 0.00 0.00 40.77 2.66
139 140 9.121658 CAGGGAAATACCTATAAGAAAGGAAAC 57.878 37.037 0.00 0.00 39.34 2.78
140 141 9.064602 TCAGGGAAATACCTATAAGAAAGGAAA 57.935 33.333 0.00 0.00 39.34 3.13
141 142 8.491958 GTCAGGGAAATACCTATAAGAAAGGAA 58.508 37.037 0.00 0.00 39.34 3.36
142 143 7.626084 TGTCAGGGAAATACCTATAAGAAAGGA 59.374 37.037 0.00 0.00 39.34 3.36
143 144 7.802117 TGTCAGGGAAATACCTATAAGAAAGG 58.198 38.462 0.00 0.00 39.34 3.11
144 145 9.681062 TTTGTCAGGGAAATACCTATAAGAAAG 57.319 33.333 0.00 0.00 39.34 2.62
145 146 9.681062 CTTTGTCAGGGAAATACCTATAAGAAA 57.319 33.333 0.00 0.00 39.34 2.52
146 147 7.773690 GCTTTGTCAGGGAAATACCTATAAGAA 59.226 37.037 0.00 0.00 39.34 2.52
147 148 7.280356 GCTTTGTCAGGGAAATACCTATAAGA 58.720 38.462 0.00 0.00 39.34 2.10
148 149 6.202954 CGCTTTGTCAGGGAAATACCTATAAG 59.797 42.308 0.00 0.00 39.34 1.73
149 150 6.053005 CGCTTTGTCAGGGAAATACCTATAA 58.947 40.000 0.00 0.00 39.34 0.98
150 151 5.364446 TCGCTTTGTCAGGGAAATACCTATA 59.636 40.000 0.00 0.00 41.41 1.31
151 152 4.163458 TCGCTTTGTCAGGGAAATACCTAT 59.837 41.667 0.00 0.00 41.41 2.57
152 153 3.516300 TCGCTTTGTCAGGGAAATACCTA 59.484 43.478 0.00 0.00 41.41 3.08
153 154 2.304761 TCGCTTTGTCAGGGAAATACCT 59.695 45.455 0.00 0.00 41.41 3.08
154 155 2.706890 TCGCTTTGTCAGGGAAATACC 58.293 47.619 0.00 0.00 41.41 2.73
155 156 3.312697 GGATCGCTTTGTCAGGGAAATAC 59.687 47.826 0.00 0.00 46.94 1.89
156 157 3.541632 GGATCGCTTTGTCAGGGAAATA 58.458 45.455 0.00 0.00 46.94 1.40
157 158 2.369394 GGATCGCTTTGTCAGGGAAAT 58.631 47.619 0.00 0.00 46.94 2.17
158 159 1.821216 GGATCGCTTTGTCAGGGAAA 58.179 50.000 0.00 0.00 46.94 3.13
159 160 0.391130 CGGATCGCTTTGTCAGGGAA 60.391 55.000 0.00 0.00 46.94 3.97
161 162 3.799753 CGGATCGCTTTGTCAGGG 58.200 61.111 0.00 0.00 36.76 4.45
180 181 2.549992 GCTTTCCAAATCCAACCCCAAC 60.550 50.000 0.00 0.00 0.00 3.77
183 184 1.276138 CTGCTTTCCAAATCCAACCCC 59.724 52.381 0.00 0.00 0.00 4.95
187 188 3.831323 TCAGACTGCTTTCCAAATCCAA 58.169 40.909 0.00 0.00 0.00 3.53
200 201 1.162698 TGCTTGCTTGATCAGACTGC 58.837 50.000 0.00 0.50 0.00 4.40
208 209 1.509463 CGCACCATGCTTGCTTGAT 59.491 52.632 13.76 0.00 42.25 2.57
230 231 2.587753 CCACGATAATGCCGCCGT 60.588 61.111 0.00 0.00 35.46 5.68
240 241 0.892755 GACACAGGTCCACCACGATA 59.107 55.000 0.00 0.00 38.12 2.92
241 242 1.671742 GACACAGGTCCACCACGAT 59.328 57.895 0.00 0.00 38.12 3.73
263 264 2.048127 GAGCAAACGACGGAGCCT 60.048 61.111 0.00 0.00 0.00 4.58
271 272 1.290955 CCGGTACTGGAGCAAACGA 59.709 57.895 16.40 0.00 0.00 3.85
290 302 0.178903 ACTACCTCCCAAGCTCCACA 60.179 55.000 0.00 0.00 0.00 4.17
314 326 1.805254 GCACAATCTGCATCCGCTT 59.195 52.632 0.00 0.00 46.29 4.68
350 362 0.175760 ACACGATCCACCATCTTCCG 59.824 55.000 0.00 0.00 0.00 4.30
374 386 1.433053 CTTGCCACGAACCACGAACA 61.433 55.000 0.00 0.00 45.77 3.18
392 404 1.980844 GGAGGAAACCGTACCTGCT 59.019 57.895 0.00 0.00 40.59 4.24
400 412 0.179108 GACATCGGAGGAGGAAACCG 60.179 60.000 0.00 0.00 46.71 4.44
414 426 0.527817 CCCCGCACGACTAAGACATC 60.528 60.000 0.00 0.00 0.00 3.06
416 428 1.904865 ACCCCGCACGACTAAGACA 60.905 57.895 0.00 0.00 0.00 3.41
425 437 1.671054 AAATCTGACACCCCGCACG 60.671 57.895 0.00 0.00 0.00 5.34
442 457 0.669318 GACACGCCATCGAACTCCAA 60.669 55.000 0.00 0.00 39.41 3.53
471 486 3.432326 CCTTAAAGGAATCAGACCGAGGG 60.432 52.174 0.00 0.00 37.67 4.30
474 489 2.093128 GCCCTTAAAGGAATCAGACCGA 60.093 50.000 0.00 0.00 37.67 4.69
486 501 2.566952 CGAAGCCATTGCCCTTAAAG 57.433 50.000 0.00 0.00 38.69 1.85
507 522 2.562298 CCAAAGTGGCTTGCCAATAGAA 59.438 45.455 16.55 0.00 0.00 2.10
509 524 2.170166 TCCAAAGTGGCTTGCCAATAG 58.830 47.619 16.55 11.05 37.47 1.73
524 539 1.269517 GCAGTTTTGCGGACATCCAAA 60.270 47.619 0.00 0.00 41.13 3.28
560 575 1.494628 GTACACGAGCTCGACACGA 59.505 57.895 40.58 18.26 43.02 4.35
563 578 1.632948 CTCCGTACACGAGCTCGACA 61.633 60.000 40.58 21.93 43.02 4.35
598 613 1.136695 CACAGCAGCCACAAAAGGAAA 59.863 47.619 0.00 0.00 0.00 3.13
599 614 0.746063 CACAGCAGCCACAAAAGGAA 59.254 50.000 0.00 0.00 0.00 3.36
606 621 3.807839 ACCACCACAGCAGCCACA 61.808 61.111 0.00 0.00 0.00 4.17
616 631 4.314440 TGCCTCTCGCACCACCAC 62.314 66.667 0.00 0.00 44.64 4.16
626 641 2.574399 GTCCGTCACCTGCCTCTC 59.426 66.667 0.00 0.00 0.00 3.20
671 686 9.244799 CCAAGAAGTAAAAATACAAACAAGACC 57.755 33.333 0.00 0.00 0.00 3.85
684 699 3.746940 ACCGCTAGCCAAGAAGTAAAAA 58.253 40.909 9.66 0.00 0.00 1.94
709 724 2.483877 CAGAACGCTATCCTTTGCACAA 59.516 45.455 0.00 0.00 0.00 3.33
784 799 2.719046 CGCAAATCTTCGCTTCGTTTTT 59.281 40.909 0.00 0.00 0.00 1.94
785 800 2.286772 ACGCAAATCTTCGCTTCGTTTT 60.287 40.909 0.00 0.00 0.00 2.43
786 801 1.263217 ACGCAAATCTTCGCTTCGTTT 59.737 42.857 0.00 0.00 0.00 3.60
787 802 0.865769 ACGCAAATCTTCGCTTCGTT 59.134 45.000 0.00 0.00 0.00 3.85
788 803 0.865769 AACGCAAATCTTCGCTTCGT 59.134 45.000 0.00 0.00 0.00 3.85
789 804 1.136363 TCAACGCAAATCTTCGCTTCG 60.136 47.619 0.00 0.00 0.00 3.79
790 805 2.234187 GTCAACGCAAATCTTCGCTTC 58.766 47.619 0.00 0.00 0.00 3.86
791 806 1.398451 CGTCAACGCAAATCTTCGCTT 60.398 47.619 0.00 0.00 0.00 4.68
792 807 0.163788 CGTCAACGCAAATCTTCGCT 59.836 50.000 0.00 0.00 0.00 4.93
793 808 0.110823 ACGTCAACGCAAATCTTCGC 60.111 50.000 1.81 0.00 44.43 4.70
794 809 3.395671 CTTACGTCAACGCAAATCTTCG 58.604 45.455 1.81 0.00 44.43 3.79
795 810 3.430895 TCCTTACGTCAACGCAAATCTTC 59.569 43.478 1.81 0.00 44.43 2.87
796 811 3.395639 TCCTTACGTCAACGCAAATCTT 58.604 40.909 1.81 0.00 44.43 2.40
797 812 3.034721 TCCTTACGTCAACGCAAATCT 57.965 42.857 1.81 0.00 44.43 2.40
798 813 3.185797 ACTTCCTTACGTCAACGCAAATC 59.814 43.478 1.81 0.00 44.43 2.17
799 814 3.059188 CACTTCCTTACGTCAACGCAAAT 60.059 43.478 1.81 0.00 44.43 2.32
800 815 2.285756 CACTTCCTTACGTCAACGCAAA 59.714 45.455 1.81 0.00 44.43 3.68
801 816 1.862201 CACTTCCTTACGTCAACGCAA 59.138 47.619 1.81 0.00 44.43 4.85
802 817 1.202440 ACACTTCCTTACGTCAACGCA 60.202 47.619 1.81 0.00 44.43 5.24
814 829 8.534954 TGTAGAGCTGTATAATTACACTTCCT 57.465 34.615 0.00 0.00 34.62 3.36
821 836 6.760291 AGCCCTTGTAGAGCTGTATAATTAC 58.240 40.000 0.45 0.00 34.99 1.89
880 900 1.950472 CGTGTGAAATGCGTTTCTCC 58.050 50.000 27.13 19.12 43.30 3.71
902 923 1.273327 GGGAATTGGTTGTTGGCTCTG 59.727 52.381 0.00 0.00 0.00 3.35
1117 1138 5.812642 CACACCAAAACTAGCCAGATACTAG 59.187 44.000 0.00 0.00 42.37 2.57
1175 1214 5.529430 TCGACCACTAAAAAGATTCAAGCAA 59.471 36.000 0.00 0.00 0.00 3.91
1177 1216 5.179555 ACTCGACCACTAAAAAGATTCAAGC 59.820 40.000 0.00 0.00 0.00 4.01
1191 1230 2.161808 CGTCATAGTTCACTCGACCACT 59.838 50.000 4.61 0.00 0.00 4.00
1192 1231 2.095364 ACGTCATAGTTCACTCGACCAC 60.095 50.000 0.00 0.00 0.00 4.16
1196 1235 5.566623 GTCATAACGTCATAGTTCACTCGA 58.433 41.667 0.00 0.00 35.70 4.04
1197 1236 4.433624 CGTCATAACGTCATAGTTCACTCG 59.566 45.833 0.00 0.00 43.94 4.18
1198 1237 5.851517 CGTCATAACGTCATAGTTCACTC 57.148 43.478 0.00 0.00 43.94 3.51
1216 1272 7.227049 TCTCACATGATATTATTAGCCGTCA 57.773 36.000 0.00 0.00 0.00 4.35
1237 1293 7.174080 GGAGAATTCCCTAGCAAACATAATCTC 59.826 40.741 0.65 0.00 37.53 2.75
1252 1319 7.016072 CAGAACATATCTACTGGAGAATTCCCT 59.984 40.741 0.65 0.00 38.60 4.20
1270 1337 0.179084 GGCTACTGGCGCAGAACATA 60.179 55.000 10.83 0.00 42.94 2.29
1271 1338 1.450312 GGCTACTGGCGCAGAACAT 60.450 57.895 10.83 0.00 42.94 2.71
1309 1380 2.092861 TGCGCCCCTAATAAGCTAACAA 60.093 45.455 4.18 0.00 0.00 2.83
1319 1390 1.750399 CAAGCACTGCGCCCCTAAT 60.750 57.895 4.18 0.00 44.04 1.73
1320 1391 2.359850 CAAGCACTGCGCCCCTAA 60.360 61.111 4.18 0.00 44.04 2.69
1321 1392 4.408821 CCAAGCACTGCGCCCCTA 62.409 66.667 4.18 0.00 44.04 3.53
1330 1401 7.054751 GGAGTAATATTTAAGACCCAAGCACT 58.945 38.462 0.00 0.00 0.00 4.40
1332 1403 7.208064 AGGAGTAATATTTAAGACCCAAGCA 57.792 36.000 0.00 0.00 0.00 3.91
1338 1409 9.984190 CAGGAGTTAGGAGTAATATTTAAGACC 57.016 37.037 0.00 0.00 0.00 3.85
1344 1415 9.892130 CAAAGACAGGAGTTAGGAGTAATATTT 57.108 33.333 0.00 0.00 0.00 1.40
1346 1417 7.071321 CCCAAAGACAGGAGTTAGGAGTAATAT 59.929 40.741 0.00 0.00 0.00 1.28
1347 1418 6.383147 CCCAAAGACAGGAGTTAGGAGTAATA 59.617 42.308 0.00 0.00 0.00 0.98
1348 1419 5.189934 CCCAAAGACAGGAGTTAGGAGTAAT 59.810 44.000 0.00 0.00 0.00 1.89
1350 1421 4.094476 CCCAAAGACAGGAGTTAGGAGTA 58.906 47.826 0.00 0.00 0.00 2.59
1351 1422 2.907042 CCCAAAGACAGGAGTTAGGAGT 59.093 50.000 0.00 0.00 0.00 3.85
1352 1423 2.237392 CCCCAAAGACAGGAGTTAGGAG 59.763 54.545 0.00 0.00 0.00 3.69
1353 1424 2.266279 CCCCAAAGACAGGAGTTAGGA 58.734 52.381 0.00 0.00 0.00 2.94
1354 1425 1.282157 CCCCCAAAGACAGGAGTTAGG 59.718 57.143 0.00 0.00 0.00 2.69
1362 1433 2.520458 TGGCACCCCCAAAGACAG 59.480 61.111 0.00 0.00 41.82 3.51
1441 1512 7.722728 AGAGCCATTTATGAGCTCAAAATGATA 59.277 33.333 35.33 20.14 45.37 2.15
1442 1513 6.550108 AGAGCCATTTATGAGCTCAAAATGAT 59.450 34.615 35.33 29.02 45.37 2.45
1444 1515 6.145338 AGAGCCATTTATGAGCTCAAAATG 57.855 37.500 31.59 31.59 45.37 2.32
1463 1534 8.845413 ATGGAATTTAGATATGAACTGAGAGC 57.155 34.615 0.00 0.00 0.00 4.09
1547 1621 9.781834 CAACATGTTTCACACTAAAGAAAGTAA 57.218 29.630 8.77 0.00 34.69 2.24
1548 1622 9.168451 TCAACATGTTTCACACTAAAGAAAGTA 57.832 29.630 8.77 0.00 34.69 2.24
1549 1623 8.050778 TCAACATGTTTCACACTAAAGAAAGT 57.949 30.769 8.77 0.00 34.69 2.66
1550 1624 9.520204 AATCAACATGTTTCACACTAAAGAAAG 57.480 29.630 8.77 0.00 34.69 2.62
1551 1625 9.868277 AAATCAACATGTTTCACACTAAAGAAA 57.132 25.926 8.77 0.00 0.00 2.52
1552 1626 9.868277 AAAATCAACATGTTTCACACTAAAGAA 57.132 25.926 8.77 0.00 0.00 2.52
1553 1627 9.299963 CAAAATCAACATGTTTCACACTAAAGA 57.700 29.630 8.77 0.00 0.00 2.52
1554 1628 8.057742 GCAAAATCAACATGTTTCACACTAAAG 58.942 33.333 8.77 0.00 0.00 1.85
1570 1644 5.393962 AGATTCTAACAGCGCAAAATCAAC 58.606 37.500 11.47 0.00 0.00 3.18
1635 1709 0.449388 CATCGCCAAGAAGAACCTGC 59.551 55.000 0.00 0.00 0.00 4.85
1802 1878 3.609853 TCCAATTGTCGATTCCTGAAGG 58.390 45.455 4.43 0.00 0.00 3.46
1844 1920 3.369147 CAGTCTCGTCATTAACAGCCAAG 59.631 47.826 0.00 0.00 0.00 3.61
1949 2025 7.501225 TGGTTCGAGATGTCATAGACAACTATA 59.499 37.037 9.46 0.05 43.76 1.31
2006 2082 9.914131 CATCGAGACCTATTATTTTATCACTGA 57.086 33.333 0.00 0.00 0.00 3.41
2054 2130 3.940209 TCATTGGCCAAAGCAACTAAG 57.060 42.857 24.71 4.29 42.56 2.18
2120 2196 5.186215 TCGTTCCCTTTTAATTCCCCAATTC 59.814 40.000 0.00 0.00 33.95 2.17
2143 2219 4.072131 TGCCTCCACTACATTTGTTCTTC 58.928 43.478 0.00 0.00 0.00 2.87
2149 2225 5.003804 ACTTTACTGCCTCCACTACATTTG 58.996 41.667 0.00 0.00 0.00 2.32
2152 2228 3.838317 TGACTTTACTGCCTCCACTACAT 59.162 43.478 0.00 0.00 0.00 2.29
2158 2234 0.324943 GCCTGACTTTACTGCCTCCA 59.675 55.000 0.00 0.00 0.00 3.86
2216 2295 4.102367 TCCCTCCACAAATTTTTGAAAGGG 59.898 41.667 24.77 24.77 45.36 3.95
2222 2301 3.059166 CGCTTCCCTCCACAAATTTTTG 58.941 45.455 1.56 1.56 43.62 2.44
2243 2322 1.478105 GATTTCACCCAAGTGCCCATC 59.522 52.381 0.00 0.00 44.16 3.51
2258 2345 6.795399 TCAAGAAACCAAGTTGTCAGATTTC 58.205 36.000 1.45 4.39 0.00 2.17
2281 2368 6.274157 TCTCTTGGAACAGATTAGTGACTC 57.726 41.667 0.00 0.00 42.39 3.36
2402 2490 2.663196 GAGTACGGCACCCTGCTT 59.337 61.111 0.00 0.00 44.28 3.91
2403 2491 3.391382 GGAGTACGGCACCCTGCT 61.391 66.667 0.00 0.00 44.28 4.24
2419 2507 6.122277 CCCCTGCCATATTGTACTATTATGG 58.878 44.000 17.77 17.77 42.08 2.74
2425 2513 2.701551 AGCCCCTGCCATATTGTACTA 58.298 47.619 0.00 0.00 38.69 1.82
2430 2518 0.396435 TCGTAGCCCCTGCCATATTG 59.604 55.000 0.00 0.00 38.69 1.90
2433 2521 1.071699 GAAATCGTAGCCCCTGCCATA 59.928 52.381 0.00 0.00 38.69 2.74
2434 2522 0.179018 GAAATCGTAGCCCCTGCCAT 60.179 55.000 0.00 0.00 38.69 4.40
2455 2544 4.340097 ACTGCATTTATGGTGTCATCCATG 59.660 41.667 13.93 0.00 46.27 3.66
2516 2605 0.610232 AAGACCCACTCATTGCTGCC 60.610 55.000 0.00 0.00 0.00 4.85
2566 2656 4.660168 ACTTTCAGAGAATGCATGGAAGT 58.340 39.130 0.00 2.05 0.00 3.01
2616 2706 2.423538 CCAGTAGCCAGTTAAATGCACC 59.576 50.000 0.00 0.00 0.00 5.01
2649 2739 4.981806 AAACCATCCAATGTATTCCACG 57.018 40.909 0.00 0.00 0.00 4.94
2659 2749 7.986889 GCAACAAAGGAATATAAACCATCCAAT 59.013 33.333 0.00 0.00 34.30 3.16
2738 2838 5.728351 TTTGCGGAATACTGTGTATTAGC 57.272 39.130 16.29 16.29 0.00 3.09
2748 2848 5.519206 GTCGAGAACTATTTTGCGGAATACT 59.481 40.000 0.00 0.00 0.00 2.12
2756 2856 6.480320 ACATCCATAGTCGAGAACTATTTTGC 59.520 38.462 0.00 0.00 46.93 3.68
2815 2915 4.759782 ACAGAAGAGGTTCCATGATAACG 58.240 43.478 0.00 0.00 32.48 3.18
2849 2949 4.393834 ACACAAAGTGCATATGTGGTACA 58.606 39.130 24.20 0.00 46.67 2.90
2885 2988 7.254795 GCACAGAATAGAATTACACCATGTACC 60.255 40.741 0.00 0.00 31.69 3.34
2886 2989 7.495934 AGCACAGAATAGAATTACACCATGTAC 59.504 37.037 0.00 0.00 31.69 2.90
2887 2990 7.564793 AGCACAGAATAGAATTACACCATGTA 58.435 34.615 0.00 0.00 0.00 2.29
2888 2991 6.418101 AGCACAGAATAGAATTACACCATGT 58.582 36.000 0.00 0.00 0.00 3.21
2889 2992 6.932356 AGCACAGAATAGAATTACACCATG 57.068 37.500 0.00 0.00 0.00 3.66
2890 2993 7.112122 TCAAGCACAGAATAGAATTACACCAT 58.888 34.615 0.00 0.00 0.00 3.55
2891 2994 6.472016 TCAAGCACAGAATAGAATTACACCA 58.528 36.000 0.00 0.00 0.00 4.17
2892 2995 6.985188 TCAAGCACAGAATAGAATTACACC 57.015 37.500 0.00 0.00 0.00 4.16
2893 2996 9.677567 TTTTTCAAGCACAGAATAGAATTACAC 57.322 29.630 0.00 0.00 0.00 2.90
2998 3101 5.185635 TGAAGGATGCCTGAAGGTAAAAATG 59.814 40.000 0.00 0.00 37.57 2.32
3154 3262 4.472286 ACAAAATGGATTTCGTACAAGCG 58.528 39.130 0.00 0.00 0.00 4.68
3174 3282 3.133901 TCCAGAAACACAGAGCACTTACA 59.866 43.478 0.00 0.00 0.00 2.41
3216 3324 3.131396 ACCTAAAGTGACTCAAACTGCG 58.869 45.455 0.00 0.00 0.00 5.18
3245 3353 7.707893 GCAGCTTAATTTCATAAACATGTGGAT 59.292 33.333 0.00 0.00 0.00 3.41
3272 3380 6.569780 ACAAAGTGTGGAGACCAAATAAAAC 58.430 36.000 0.00 0.00 34.18 2.43
3305 3413 9.905713 ATGATCTTTGTAGCCAAAATAGAAGTA 57.094 29.630 0.00 0.00 39.95 2.24
3375 3483 6.690957 TCACAAACGTGAAATGATCAAAGAAC 59.309 34.615 0.00 0.00 40.45 3.01
3383 3491 6.511416 TCCAAAATCACAAACGTGAAATGAT 58.489 32.000 0.00 0.00 46.16 2.45
3462 3570 8.680903 CCAGAATATAAGAGCATTTTTGACACT 58.319 33.333 0.00 0.00 0.00 3.55
3463 3571 7.917505 CCCAGAATATAAGAGCATTTTTGACAC 59.082 37.037 0.00 0.00 0.00 3.67
3464 3572 7.833682 TCCCAGAATATAAGAGCATTTTTGACA 59.166 33.333 0.00 0.00 0.00 3.58
3465 3573 8.131731 GTCCCAGAATATAAGAGCATTTTTGAC 58.868 37.037 0.00 0.00 0.00 3.18
3466 3574 7.012327 CGTCCCAGAATATAAGAGCATTTTTGA 59.988 37.037 0.00 0.00 0.00 2.69
3467 3575 7.134815 CGTCCCAGAATATAAGAGCATTTTTG 58.865 38.462 0.00 0.00 0.00 2.44
3468 3576 6.263168 CCGTCCCAGAATATAAGAGCATTTTT 59.737 38.462 0.00 0.00 0.00 1.94
3469 3577 5.765182 CCGTCCCAGAATATAAGAGCATTTT 59.235 40.000 0.00 0.00 0.00 1.82
3470 3578 5.071788 TCCGTCCCAGAATATAAGAGCATTT 59.928 40.000 0.00 0.00 0.00 2.32
3471 3579 4.593206 TCCGTCCCAGAATATAAGAGCATT 59.407 41.667 0.00 0.00 0.00 3.56
3472 3580 4.160329 TCCGTCCCAGAATATAAGAGCAT 58.840 43.478 0.00 0.00 0.00 3.79
3473 3581 3.572642 TCCGTCCCAGAATATAAGAGCA 58.427 45.455 0.00 0.00 0.00 4.26
3474 3582 3.056465 CCTCCGTCCCAGAATATAAGAGC 60.056 52.174 0.00 0.00 0.00 4.09
3475 3583 3.511934 CCCTCCGTCCCAGAATATAAGAG 59.488 52.174 0.00 0.00 0.00 2.85
3476 3584 3.141460 TCCCTCCGTCCCAGAATATAAGA 59.859 47.826 0.00 0.00 0.00 2.10
3477 3585 3.507411 TCCCTCCGTCCCAGAATATAAG 58.493 50.000 0.00 0.00 0.00 1.73
3478 3586 3.116862 ACTCCCTCCGTCCCAGAATATAA 60.117 47.826 0.00 0.00 0.00 0.98
3479 3587 2.449730 ACTCCCTCCGTCCCAGAATATA 59.550 50.000 0.00 0.00 0.00 0.86
3480 3588 1.220750 ACTCCCTCCGTCCCAGAATAT 59.779 52.381 0.00 0.00 0.00 1.28
3481 3589 0.635009 ACTCCCTCCGTCCCAGAATA 59.365 55.000 0.00 0.00 0.00 1.75
3482 3590 0.635009 TACTCCCTCCGTCCCAGAAT 59.365 55.000 0.00 0.00 0.00 2.40
3483 3591 0.410663 TTACTCCCTCCGTCCCAGAA 59.589 55.000 0.00 0.00 0.00 3.02
3484 3592 0.635009 ATTACTCCCTCCGTCCCAGA 59.365 55.000 0.00 0.00 0.00 3.86
3485 3593 2.240279 CTATTACTCCCTCCGTCCCAG 58.760 57.143 0.00 0.00 0.00 4.45
3486 3594 1.572415 ACTATTACTCCCTCCGTCCCA 59.428 52.381 0.00 0.00 0.00 4.37
3487 3595 2.378378 ACTATTACTCCCTCCGTCCC 57.622 55.000 0.00 0.00 0.00 4.46
3488 3596 4.646492 TGTTAACTATTACTCCCTCCGTCC 59.354 45.833 7.22 0.00 0.00 4.79
3489 3597 5.591877 TCTGTTAACTATTACTCCCTCCGTC 59.408 44.000 7.22 0.00 0.00 4.79
3490 3598 5.513233 TCTGTTAACTATTACTCCCTCCGT 58.487 41.667 7.22 0.00 0.00 4.69
3491 3599 6.461110 TTCTGTTAACTATTACTCCCTCCG 57.539 41.667 7.22 0.00 0.00 4.63
3492 3600 7.146648 CGATTCTGTTAACTATTACTCCCTCC 58.853 42.308 7.22 0.00 0.00 4.30
3493 3601 7.146648 CCGATTCTGTTAACTATTACTCCCTC 58.853 42.308 7.22 0.00 0.00 4.30
3494 3602 6.041751 CCCGATTCTGTTAACTATTACTCCCT 59.958 42.308 7.22 0.00 0.00 4.20
3495 3603 6.221659 CCCGATTCTGTTAACTATTACTCCC 58.778 44.000 7.22 0.00 0.00 4.30
3496 3604 5.695363 GCCCGATTCTGTTAACTATTACTCC 59.305 44.000 7.22 0.00 0.00 3.85
3497 3605 5.695363 GGCCCGATTCTGTTAACTATTACTC 59.305 44.000 7.22 0.00 0.00 2.59
3498 3606 5.129815 TGGCCCGATTCTGTTAACTATTACT 59.870 40.000 7.22 0.00 0.00 2.24
3499 3607 5.362263 TGGCCCGATTCTGTTAACTATTAC 58.638 41.667 7.22 0.00 0.00 1.89
3549 3657 9.971922 ATGAAAAGGCTAATTTAATATGTCTGC 57.028 29.630 0.00 0.00 0.00 4.26
3562 3670 5.826643 TCCTACACCAATGAAAAGGCTAAT 58.173 37.500 0.00 0.00 0.00 1.73
3668 3776 6.512297 GTTGAAAGCAACCAGGAAGAAAATA 58.488 36.000 0.00 0.00 46.80 1.40
3751 3859 2.671070 GCAGCAAATTAAACCTCGGTGG 60.671 50.000 0.00 0.00 42.93 4.61
4001 4112 5.756950 ACTAACGATGTGAACGTGTAATG 57.243 39.130 0.00 0.00 43.16 1.90
4017 4128 6.257193 ACAGTAGGAAGTTGTGAAAACTAACG 59.743 38.462 0.00 0.00 0.00 3.18
4044 4158 4.277672 GCAGATATGTGCATCAGGATGTTT 59.722 41.667 19.27 0.00 43.41 2.83
4111 4267 5.118510 GGTCTTGGCAAATGTGTAAAATTCG 59.881 40.000 0.00 0.00 0.00 3.34
4178 4939 6.385649 TTGCCGTCTTTCATTTCTTAAACT 57.614 33.333 0.00 0.00 0.00 2.66
4190 4951 8.305317 ACTATAATAGTATCCTTGCCGTCTTTC 58.695 37.037 0.00 0.00 37.23 2.62
4258 5020 6.284459 ACCAAATCAATTTCCGCAAAACTAA 58.716 32.000 0.00 0.00 0.00 2.24
4346 5108 3.633525 TCATGCCCTTCAGTATGCAATTC 59.366 43.478 0.00 0.00 37.27 2.17
4393 5155 0.807496 AATTTCTCTCTGCGCCTTGC 59.193 50.000 4.18 0.00 46.70 4.01
4442 5204 1.204113 AGGAGGAAAGGGCTGTGGAG 61.204 60.000 0.00 0.00 0.00 3.86
4462 5224 5.009210 GGTAATTAAGCCGGCACATGATTAA 59.991 40.000 31.54 22.33 0.00 1.40
4488 5250 1.202927 ACATTGGGCTGTTAGTGCACT 60.203 47.619 25.12 25.12 34.45 4.40
4506 5268 3.095912 TCCTAGTTGGATTCGAGGACA 57.904 47.619 0.00 0.00 40.56 4.02
4546 5308 7.623278 TCTTTCCAATCTTGCCCCTAATTAATT 59.377 33.333 5.89 5.89 0.00 1.40
4642 5408 7.042791 AGTGATAAATGGCAAAAACAAGAAACG 60.043 33.333 0.00 0.00 0.00 3.60
4649 5415 6.148948 CGAGAAGTGATAAATGGCAAAAACA 58.851 36.000 0.00 0.00 0.00 2.83
4725 5493 5.415701 TGTGAAAATGACCAAGCTATCCTTC 59.584 40.000 0.00 0.00 0.00 3.46
4766 5534 2.161855 TGGGCAAAATGAGCTGTACAG 58.838 47.619 18.93 18.93 0.00 2.74
4943 5712 3.100817 CCAATAAATTCTTGACAGCGCG 58.899 45.455 0.00 0.00 0.00 6.86
4998 5767 4.848357 ACATTTGGTAGGGAGATGAACAG 58.152 43.478 0.00 0.00 0.00 3.16
5040 5809 2.650116 GCTCGGCAAGGAGGAGACA 61.650 63.158 1.58 0.00 34.56 3.41
5066 5835 7.642586 CGTTTGGAACTTAGGAAAAAGTAGTTG 59.357 37.037 0.00 0.00 38.76 3.16
5161 6128 6.093219 AGCACATTCTCTTGTCATAACATCAC 59.907 38.462 0.00 0.00 34.73 3.06
5165 6132 6.701340 AGTAGCACATTCTCTTGTCATAACA 58.299 36.000 0.00 0.00 0.00 2.41
5199 6166 4.241590 TCAAGTAAACCAAATGCTGCAG 57.758 40.909 10.11 10.11 0.00 4.41
5276 6244 3.084039 TGGCTTCCTGCAGTAAATGAAG 58.916 45.455 19.49 19.49 45.15 3.02
5338 6306 4.099266 ACATTGGTTGCAGTTTTAGCAGAA 59.901 37.500 0.00 0.00 43.75 3.02
5401 6369 1.270907 ACCAACAGCCCAACAAACAA 58.729 45.000 0.00 0.00 0.00 2.83
5402 6370 1.270907 AACCAACAGCCCAACAAACA 58.729 45.000 0.00 0.00 0.00 2.83
5403 6371 2.093711 AGAAACCAACAGCCCAACAAAC 60.094 45.455 0.00 0.00 0.00 2.93
5404 6372 2.093764 CAGAAACCAACAGCCCAACAAA 60.094 45.455 0.00 0.00 0.00 2.83
5405 6373 1.480137 CAGAAACCAACAGCCCAACAA 59.520 47.619 0.00 0.00 0.00 2.83
5406 6374 1.110442 CAGAAACCAACAGCCCAACA 58.890 50.000 0.00 0.00 0.00 3.33
5407 6375 0.389025 CCAGAAACCAACAGCCCAAC 59.611 55.000 0.00 0.00 0.00 3.77
5408 6376 0.260230 TCCAGAAACCAACAGCCCAA 59.740 50.000 0.00 0.00 0.00 4.12
5409 6377 0.467290 GTCCAGAAACCAACAGCCCA 60.467 55.000 0.00 0.00 0.00 5.36
5460 6428 2.562738 GCAAAAGGTGGAGCAAGGTAAT 59.437 45.455 0.00 0.00 0.00 1.89
5522 6593 5.675071 GCAATGGGAATCGATGAAACGTTAA 60.675 40.000 0.00 0.00 34.70 2.01
5526 6597 2.097304 TGCAATGGGAATCGATGAAACG 59.903 45.455 0.00 0.00 0.00 3.60
5550 6621 0.969409 GCCCCTGCAGCAATCTCTTT 60.969 55.000 8.66 0.00 37.47 2.52
5592 6663 2.066999 GGAGAGAACCATCCCCGCT 61.067 63.158 0.00 0.00 0.00 5.52
5730 6801 1.003580 AGGATCAAGAGGCGCTTTCAA 59.996 47.619 7.64 0.00 33.60 2.69
5768 6839 1.877165 GGCACGGTAGCGCTTAGAC 60.877 63.158 18.68 7.97 34.64 2.59
5805 6877 4.820284 TTACATGACAAACGCATGAACA 57.180 36.364 10.22 2.26 44.49 3.18
5838 6910 3.565482 TGCGATATCTGAAAAGGCATTCC 59.435 43.478 0.34 0.00 0.00 3.01
5846 6918 6.701841 GGTATCTCACTTGCGATATCTGAAAA 59.298 38.462 0.34 0.00 0.00 2.29
5847 6919 6.183360 TGGTATCTCACTTGCGATATCTGAAA 60.183 38.462 0.34 0.00 0.00 2.69
5849 6921 4.827284 TGGTATCTCACTTGCGATATCTGA 59.173 41.667 0.34 0.00 0.00 3.27
5856 6928 4.092821 CGAATTTTGGTATCTCACTTGCGA 59.907 41.667 0.00 0.00 0.00 5.10
5857 6929 4.142902 ACGAATTTTGGTATCTCACTTGCG 60.143 41.667 0.00 0.00 0.00 4.85
5858 6930 5.296813 ACGAATTTTGGTATCTCACTTGC 57.703 39.130 0.00 0.00 0.00 4.01
5859 6931 6.961554 GCTTACGAATTTTGGTATCTCACTTG 59.038 38.462 0.00 0.00 0.00 3.16
5860 6932 6.183360 CGCTTACGAATTTTGGTATCTCACTT 60.183 38.462 0.00 0.00 43.93 3.16
5861 6933 5.291128 CGCTTACGAATTTTGGTATCTCACT 59.709 40.000 0.00 0.00 43.93 3.41
5862 6934 5.490213 CGCTTACGAATTTTGGTATCTCAC 58.510 41.667 0.00 0.00 43.93 3.51
5863 6935 5.712217 CGCTTACGAATTTTGGTATCTCA 57.288 39.130 0.00 0.00 43.93 3.27
5905 6977 1.271543 TGGGGAGCAGACACAATCAAG 60.272 52.381 0.00 0.00 0.00 3.02
5917 6989 2.238521 GAACATCAAACTTGGGGAGCA 58.761 47.619 0.00 0.00 0.00 4.26
5918 6990 2.229784 CTGAACATCAAACTTGGGGAGC 59.770 50.000 0.00 0.00 0.00 4.70
5920 6992 3.394274 TCTCTGAACATCAAACTTGGGGA 59.606 43.478 0.00 0.00 0.00 4.81
5921 6993 3.754965 TCTCTGAACATCAAACTTGGGG 58.245 45.455 0.00 0.00 0.00 4.96
5924 7008 7.664082 ACATACTCTCTGAACATCAAACTTG 57.336 36.000 0.00 0.00 0.00 3.16
5948 7032 7.847096 TGTATTCTCTGTTGAATAGCCTGTTA 58.153 34.615 0.00 0.00 38.93 2.41
5955 7039 5.814188 TGCAGCTGTATTCTCTGTTGAATAG 59.186 40.000 16.64 0.00 38.93 1.73
5987 7071 5.034152 CCCATCGAACATAAAATTCCAACG 58.966 41.667 0.00 0.00 0.00 4.10
5990 7074 7.777910 ACTAATCCCATCGAACATAAAATTCCA 59.222 33.333 0.00 0.00 0.00 3.53
6026 7114 9.872721 AAAAATTGGTTGAAATTTTCTGCAAAT 57.127 22.222 10.33 5.76 44.84 2.32
6053 7141 0.312729 TATATTCGCTCTTCGCCGCA 59.687 50.000 0.00 0.00 38.27 5.69
6056 7144 4.789095 TTTGTTATATTCGCTCTTCGCC 57.211 40.909 0.00 0.00 38.27 5.54
6082 7170 3.073209 TGCACATTACCTGTTTCCTGGTA 59.927 43.478 0.00 0.00 42.37 3.25
6217 7310 3.005155 GCCTGGAGATAATTCCATTGCAC 59.995 47.826 0.00 0.00 45.80 4.57
6236 7329 2.158755 GCAATCTGTGTATACCAGGCCT 60.159 50.000 0.00 0.00 0.00 5.19
6440 7543 2.048877 ACCGGAAGTACAACGCCG 60.049 61.111 9.46 2.19 39.46 6.46
6489 7592 0.650512 GCGTGTGACCCGAATATGTG 59.349 55.000 0.00 0.00 0.00 3.21
6519 7622 1.774856 ACTTAACTGGGTGTTCCTGCT 59.225 47.619 0.00 0.00 39.89 4.24
6537 7640 1.813092 CTGCAGACCAGAAGTGCAACT 60.813 52.381 8.42 0.00 46.16 3.16
6553 7656 3.578282 TCATAATCGGATTAGGCTCTGCA 59.422 43.478 15.55 0.00 0.00 4.41
6573 7677 3.942115 TGAAAACACTGTCGAAATGGTCA 59.058 39.130 0.00 0.00 0.00 4.02
6597 7701 6.873605 GGTTTATGAAGATTTTGAAAGGGGTG 59.126 38.462 0.00 0.00 0.00 4.61
6616 7720 4.217334 TGTCATGAACGCAATGTGGTTTAT 59.783 37.500 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.