Multiple sequence alignment - TraesCS4D01G016400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G016400 chr4D 100.000 3286 0 0 409 3694 7418167 7414882 0.000000e+00 6069.0
1 TraesCS4D01G016400 chr4D 100.000 169 0 0 1 169 7418575 7418407 2.770000e-81 313.0
2 TraesCS4D01G016400 chr4D 100.000 33 0 0 88 120 187957684 187957716 1.110000e-05 62.1
3 TraesCS4D01G016400 chr4D 100.000 33 0 0 88 120 247755104 247755072 1.110000e-05 62.1
4 TraesCS4D01G016400 chr4B 89.718 1702 98 34 589 2246 13285519 13283851 0.000000e+00 2102.0
5 TraesCS4D01G016400 chr4B 93.049 1338 62 14 2245 3555 13283822 13282489 0.000000e+00 1927.0
6 TraesCS4D01G016400 chr4B 89.015 1229 86 19 2245 3429 385038271 385037048 0.000000e+00 1476.0
7 TraesCS4D01G016400 chr4B 89.474 399 29 6 1814 2205 385040451 385040059 3.310000e-135 492.0
8 TraesCS4D01G016400 chr4B 88.608 79 7 2 43 121 636802231 636802155 1.090000e-15 95.3
9 TraesCS4D01G016400 chr4A 94.193 1326 47 15 939 2246 596223778 596222465 0.000000e+00 1995.0
10 TraesCS4D01G016400 chr4A 94.987 1117 30 8 2245 3344 596222436 596221329 0.000000e+00 1729.0
11 TraesCS4D01G016400 chr4A 90.368 353 16 5 3324 3658 596221171 596220819 7.280000e-122 448.0
12 TraesCS4D01G016400 chr4A 90.541 296 7 3 983 1275 161397983 161397706 4.510000e-99 372.0
13 TraesCS4D01G016400 chr7B 89.260 1229 83 19 2242 3426 552982633 552983856 0.000000e+00 1493.0
14 TraesCS4D01G016400 chr7B 89.097 1229 85 21 2242 3426 263413346 263414569 0.000000e+00 1482.0
15 TraesCS4D01G016400 chr7B 89.223 399 30 6 1814 2205 263411668 263412060 1.540000e-133 486.0
16 TraesCS4D01G016400 chr2B 89.233 1226 83 19 2245 3426 391901039 391899819 0.000000e+00 1487.0
17 TraesCS4D01G016400 chr2B 89.716 1128 91 17 2245 3353 47005755 47004634 0.000000e+00 1417.0
18 TraesCS4D01G016400 chr2B 89.455 1157 73 19 2245 3358 689559597 689558447 0.000000e+00 1415.0
19 TraesCS4D01G016400 chr2B 90.455 440 29 6 1814 2246 269027049 269027482 5.350000e-158 568.0
20 TraesCS4D01G016400 chr2B 89.724 399 28 7 1814 2205 689561777 689561385 7.120000e-137 497.0
21 TraesCS4D01G016400 chr2B 85.306 245 16 8 3429 3654 108226765 108227008 6.170000e-58 235.0
22 TraesCS4D01G016400 chr2B 83.740 246 19 7 3432 3657 495925452 495925208 2.890000e-51 213.0
23 TraesCS4D01G016400 chr2A 89.233 1226 83 19 2245 3426 435372854 435371634 0.000000e+00 1487.0
24 TraesCS4D01G016400 chr2A 89.724 399 28 6 1814 2205 435375032 435374640 7.120000e-137 497.0
25 TraesCS4D01G016400 chr2A 97.436 39 0 1 88 125 739816996 739816958 8.560000e-07 65.8
26 TraesCS4D01G016400 chr5B 89.079 1227 83 21 2245 3426 651561910 651560690 0.000000e+00 1476.0
27 TraesCS4D01G016400 chr5B 87.243 243 24 6 3421 3657 642365621 642365380 1.690000e-68 270.0
28 TraesCS4D01G016400 chr5B 97.500 40 1 0 87 126 656158129 656158090 6.620000e-08 69.4
29 TraesCS4D01G016400 chr3B 89.113 1139 89 15 2242 3353 796734184 796735314 0.000000e+00 1384.0
30 TraesCS4D01G016400 chr3B 89.724 399 28 6 1814 2205 703530099 703529707 7.120000e-137 497.0
31 TraesCS4D01G016400 chr1B 89.376 433 33 6 1819 2244 78173682 78173256 1.950000e-147 532.0
32 TraesCS4D01G016400 chr1B 100.000 53 0 0 117 169 680778060 680778008 8.440000e-17 99.0
33 TraesCS4D01G016400 chr2D 96.284 296 8 2 983 1275 480771278 480770983 1.990000e-132 483.0
34 TraesCS4D01G016400 chr2D 95.946 296 9 2 983 1275 73844673 73844378 9.280000e-131 477.0
35 TraesCS4D01G016400 chr3D 92.923 325 15 7 957 1275 601615084 601615406 2.010000e-127 466.0
36 TraesCS4D01G016400 chr3D 100.000 34 0 0 88 121 21934525 21934558 3.080000e-06 63.9
37 TraesCS4D01G016400 chr3D 100.000 33 0 0 88 120 576285576 576285608 1.110000e-05 62.1
38 TraesCS4D01G016400 chr1D 94.983 299 12 2 980 1275 254635014 254635312 2.010000e-127 466.0
39 TraesCS4D01G016400 chr7A 85.714 238 19 9 3434 3657 91621568 91621332 1.710000e-58 237.0
40 TraesCS4D01G016400 chr5D 95.000 40 0 2 88 125 562986959 562986920 1.110000e-05 62.1
41 TraesCS4D01G016400 chr6B 94.737 38 2 0 88 125 393592886 393592849 3.980000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G016400 chr4D 7414882 7418575 3693 True 3191.000000 6069 100.000000 1 3694 2 chr4D.!!$R2 3693
1 TraesCS4D01G016400 chr4B 13282489 13285519 3030 True 2014.500000 2102 91.383500 589 3555 2 chr4B.!!$R2 2966
2 TraesCS4D01G016400 chr4B 385037048 385040451 3403 True 984.000000 1476 89.244500 1814 3429 2 chr4B.!!$R3 1615
3 TraesCS4D01G016400 chr4A 596220819 596223778 2959 True 1390.666667 1995 93.182667 939 3658 3 chr4A.!!$R2 2719
4 TraesCS4D01G016400 chr7B 552982633 552983856 1223 False 1493.000000 1493 89.260000 2242 3426 1 chr7B.!!$F1 1184
5 TraesCS4D01G016400 chr7B 263411668 263414569 2901 False 984.000000 1482 89.160000 1814 3426 2 chr7B.!!$F2 1612
6 TraesCS4D01G016400 chr2B 391899819 391901039 1220 True 1487.000000 1487 89.233000 2245 3426 1 chr2B.!!$R2 1181
7 TraesCS4D01G016400 chr2B 47004634 47005755 1121 True 1417.000000 1417 89.716000 2245 3353 1 chr2B.!!$R1 1108
8 TraesCS4D01G016400 chr2B 689558447 689561777 3330 True 956.000000 1415 89.589500 1814 3358 2 chr2B.!!$R4 1544
9 TraesCS4D01G016400 chr2A 435371634 435375032 3398 True 992.000000 1487 89.478500 1814 3426 2 chr2A.!!$R2 1612
10 TraesCS4D01G016400 chr5B 651560690 651561910 1220 True 1476.000000 1476 89.079000 2245 3426 1 chr5B.!!$R2 1181
11 TraesCS4D01G016400 chr3B 796734184 796735314 1130 False 1384.000000 1384 89.113000 2242 3353 1 chr3B.!!$F1 1111

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
457 458 0.032615 TTTTGGCCACTCCCAACACT 60.033 50.0 3.88 0.00 44.17 3.55 F
541 542 0.033208 GGAATGGAGCCATGTGGGAA 60.033 55.0 2.18 0.00 40.01 3.97 F
895 911 0.034767 GGGCCTTTAGTTAACGGGCT 60.035 55.0 23.30 3.41 45.57 5.19 F
926 942 0.179048 ATGGATCCGCATTCGCTTCA 60.179 50.0 7.39 0.00 35.30 3.02 F
1973 2017 0.179097 TTCAACAAAGGTTTGCCGCC 60.179 50.0 2.27 0.00 41.79 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1971 2015 0.394899 AGGCAAGCACTAGAATGGGC 60.395 55.000 0.00 0.0 36.44 5.36 R
2126 2175 2.093341 GCAATGTTGAGGGGCAATTCAT 60.093 45.455 0.00 0.0 39.03 2.57 R
2228 4096 2.159198 GGTTAGCCAATGTCAATGCCAG 60.159 50.000 0.00 0.0 34.09 4.85 R
2243 4142 3.189287 CAGCCGGATATGATTTGGTTAGC 59.811 47.826 5.05 0.0 0.00 3.09 R
2926 4863 0.619543 TTACCTGCAGGACTACCCCC 60.620 60.000 39.19 0.0 38.94 5.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.677148 TTTAGTTATCCTAAACTGATCATGCC 57.323 34.615 0.00 0.00 40.02 4.40
26 27 6.252599 AGTTATCCTAAACTGATCATGCCA 57.747 37.500 0.00 0.00 38.28 4.92
27 28 6.058183 AGTTATCCTAAACTGATCATGCCAC 58.942 40.000 0.00 0.00 38.28 5.01
28 29 3.998913 TCCTAAACTGATCATGCCACA 57.001 42.857 0.00 0.00 0.00 4.17
29 30 4.299586 TCCTAAACTGATCATGCCACAA 57.700 40.909 0.00 0.00 0.00 3.33
30 31 4.009675 TCCTAAACTGATCATGCCACAAC 58.990 43.478 0.00 0.00 0.00 3.32
31 32 4.012374 CCTAAACTGATCATGCCACAACT 58.988 43.478 0.00 0.00 0.00 3.16
32 33 4.460382 CCTAAACTGATCATGCCACAACTT 59.540 41.667 0.00 0.00 0.00 2.66
33 34 3.928727 AACTGATCATGCCACAACTTG 57.071 42.857 0.00 0.00 0.00 3.16
34 35 1.542915 ACTGATCATGCCACAACTTGC 59.457 47.619 0.00 0.00 0.00 4.01
35 36 1.816835 CTGATCATGCCACAACTTGCT 59.183 47.619 0.00 0.00 0.00 3.91
36 37 2.230508 CTGATCATGCCACAACTTGCTT 59.769 45.455 0.00 0.00 0.00 3.91
37 38 2.629137 TGATCATGCCACAACTTGCTTT 59.371 40.909 0.00 0.00 0.00 3.51
38 39 3.825585 TGATCATGCCACAACTTGCTTTA 59.174 39.130 0.00 0.00 0.00 1.85
39 40 4.280425 TGATCATGCCACAACTTGCTTTAA 59.720 37.500 0.00 0.00 0.00 1.52
40 41 4.662468 TCATGCCACAACTTGCTTTAAA 57.338 36.364 0.00 0.00 0.00 1.52
41 42 4.619973 TCATGCCACAACTTGCTTTAAAG 58.380 39.130 11.02 11.02 0.00 1.85
42 43 4.340666 TCATGCCACAACTTGCTTTAAAGA 59.659 37.500 19.48 1.53 0.00 2.52
43 44 4.040445 TGCCACAACTTGCTTTAAAGAC 57.960 40.909 19.48 10.51 0.00 3.01
44 45 3.699038 TGCCACAACTTGCTTTAAAGACT 59.301 39.130 19.48 0.00 0.00 3.24
45 46 4.884744 TGCCACAACTTGCTTTAAAGACTA 59.115 37.500 19.48 6.52 0.00 2.59
46 47 5.534654 TGCCACAACTTGCTTTAAAGACTAT 59.465 36.000 19.48 0.00 0.00 2.12
47 48 6.086871 GCCACAACTTGCTTTAAAGACTATC 58.913 40.000 19.48 1.24 0.00 2.08
48 49 6.293955 GCCACAACTTGCTTTAAAGACTATCA 60.294 38.462 19.48 3.98 0.00 2.15
49 50 7.078228 CCACAACTTGCTTTAAAGACTATCAC 58.922 38.462 19.48 0.00 0.00 3.06
50 51 7.255104 CCACAACTTGCTTTAAAGACTATCACA 60.255 37.037 19.48 2.53 0.00 3.58
51 52 8.292448 CACAACTTGCTTTAAAGACTATCACAT 58.708 33.333 19.48 0.00 0.00 3.21
52 53 9.502091 ACAACTTGCTTTAAAGACTATCACATA 57.498 29.630 19.48 0.00 0.00 2.29
53 54 9.760660 CAACTTGCTTTAAAGACTATCACATAC 57.239 33.333 19.48 0.00 0.00 2.39
54 55 9.502091 AACTTGCTTTAAAGACTATCACATACA 57.498 29.630 19.48 0.00 0.00 2.29
55 56 8.936864 ACTTGCTTTAAAGACTATCACATACAC 58.063 33.333 19.48 0.00 0.00 2.90
56 57 8.840833 TTGCTTTAAAGACTATCACATACACA 57.159 30.769 19.48 0.00 0.00 3.72
57 58 9.448438 TTGCTTTAAAGACTATCACATACACAT 57.552 29.630 19.48 0.00 0.00 3.21
58 59 8.882736 TGCTTTAAAGACTATCACATACACATG 58.117 33.333 19.48 0.00 38.21 3.21
59 60 7.852945 GCTTTAAAGACTATCACATACACATGC 59.147 37.037 19.48 0.00 35.39 4.06
60 61 9.102757 CTTTAAAGACTATCACATACACATGCT 57.897 33.333 9.77 0.00 35.39 3.79
61 62 9.448438 TTTAAAGACTATCACATACACATGCTT 57.552 29.630 0.00 0.00 35.39 3.91
62 63 7.928307 AAAGACTATCACATACACATGCTTT 57.072 32.000 0.00 0.00 35.39 3.51
64 65 9.448438 AAAGACTATCACATACACATGCTTTAA 57.552 29.630 0.00 0.00 35.39 1.52
65 66 9.448438 AAGACTATCACATACACATGCTTTAAA 57.552 29.630 0.00 0.00 35.39 1.52
66 67 9.102757 AGACTATCACATACACATGCTTTAAAG 57.897 33.333 11.02 11.02 35.39 1.85
67 68 9.098355 GACTATCACATACACATGCTTTAAAGA 57.902 33.333 19.48 4.74 35.39 2.52
68 69 8.883731 ACTATCACATACACATGCTTTAAAGAC 58.116 33.333 19.48 10.51 35.39 3.01
69 70 7.928307 ATCACATACACATGCTTTAAAGACT 57.072 32.000 19.48 1.83 35.39 3.24
70 71 7.364522 TCACATACACATGCTTTAAAGACTC 57.635 36.000 19.48 1.98 35.39 3.36
71 72 6.090763 TCACATACACATGCTTTAAAGACTCG 59.909 38.462 19.48 6.16 35.39 4.18
72 73 5.351465 ACATACACATGCTTTAAAGACTCGG 59.649 40.000 19.48 7.15 35.39 4.63
73 74 2.484264 ACACATGCTTTAAAGACTCGGC 59.516 45.455 19.48 3.69 0.00 5.54
74 75 2.483877 CACATGCTTTAAAGACTCGGCA 59.516 45.455 19.48 9.54 0.00 5.69
75 76 3.127548 CACATGCTTTAAAGACTCGGCAT 59.872 43.478 19.48 11.42 40.38 4.40
76 77 3.688272 CATGCTTTAAAGACTCGGCATG 58.312 45.455 19.48 18.55 46.49 4.06
77 78 1.468520 TGCTTTAAAGACTCGGCATGC 59.531 47.619 19.48 9.90 0.00 4.06
78 79 1.202188 GCTTTAAAGACTCGGCATGCC 60.202 52.381 27.67 27.67 0.00 4.40
79 80 2.083774 CTTTAAAGACTCGGCATGCCA 58.916 47.619 34.93 20.95 35.37 4.92
80 81 2.192664 TTAAAGACTCGGCATGCCAA 57.807 45.000 34.93 18.57 35.37 4.52
81 82 2.418368 TAAAGACTCGGCATGCCAAT 57.582 45.000 34.93 20.11 35.37 3.16
82 83 0.813184 AAAGACTCGGCATGCCAATG 59.187 50.000 34.93 24.65 36.82 2.82
91 92 3.959520 CATGCCAATGCTTTTTGCG 57.040 47.368 0.00 0.00 46.63 4.85
92 93 0.179210 CATGCCAATGCTTTTTGCGC 60.179 50.000 0.00 0.00 46.63 6.09
93 94 1.300266 ATGCCAATGCTTTTTGCGCC 61.300 50.000 4.18 0.00 46.63 6.53
94 95 1.960250 GCCAATGCTTTTTGCGCCA 60.960 52.632 4.18 0.00 46.63 5.69
95 96 1.300266 GCCAATGCTTTTTGCGCCAT 61.300 50.000 4.18 0.00 46.63 4.40
96 97 0.722848 CCAATGCTTTTTGCGCCATC 59.277 50.000 4.18 0.00 46.63 3.51
97 98 0.367548 CAATGCTTTTTGCGCCATCG 59.632 50.000 4.18 0.00 46.63 3.84
98 99 0.737019 AATGCTTTTTGCGCCATCGG 60.737 50.000 4.18 0.00 46.63 4.18
99 100 3.181290 GCTTTTTGCGCCATCGGC 61.181 61.111 4.18 0.00 46.75 5.54
111 112 4.467084 ATCGGCGCAACGGGTCAT 62.467 61.111 10.83 0.00 0.00 3.06
114 115 2.185867 GGCGCAACGGGTCATCTA 59.814 61.111 10.83 0.00 0.00 1.98
115 116 1.883084 GGCGCAACGGGTCATCTAG 60.883 63.158 10.83 0.00 0.00 2.43
116 117 1.153628 GCGCAACGGGTCATCTAGT 60.154 57.895 0.30 0.00 0.00 2.57
117 118 0.101759 GCGCAACGGGTCATCTAGTA 59.898 55.000 0.30 0.00 0.00 1.82
118 119 1.269621 GCGCAACGGGTCATCTAGTAT 60.270 52.381 0.30 0.00 0.00 2.12
119 120 2.802057 GCGCAACGGGTCATCTAGTATT 60.802 50.000 0.30 0.00 0.00 1.89
120 121 3.454375 CGCAACGGGTCATCTAGTATTT 58.546 45.455 0.00 0.00 0.00 1.40
121 122 3.245284 CGCAACGGGTCATCTAGTATTTG 59.755 47.826 0.00 0.00 0.00 2.32
122 123 4.439057 GCAACGGGTCATCTAGTATTTGA 58.561 43.478 0.00 0.00 0.00 2.69
123 124 4.873827 GCAACGGGTCATCTAGTATTTGAA 59.126 41.667 0.00 0.00 0.00 2.69
124 125 5.353123 GCAACGGGTCATCTAGTATTTGAAA 59.647 40.000 0.00 0.00 0.00 2.69
125 126 6.038271 GCAACGGGTCATCTAGTATTTGAAAT 59.962 38.462 0.00 0.00 0.00 2.17
126 127 7.415206 GCAACGGGTCATCTAGTATTTGAAATT 60.415 37.037 0.00 0.00 0.00 1.82
127 128 8.458843 CAACGGGTCATCTAGTATTTGAAATTT 58.541 33.333 0.00 0.00 0.00 1.82
128 129 8.209917 ACGGGTCATCTAGTATTTGAAATTTC 57.790 34.615 11.41 11.41 0.00 2.17
129 130 8.047310 ACGGGTCATCTAGTATTTGAAATTTCT 58.953 33.333 18.64 1.90 0.00 2.52
130 131 9.542462 CGGGTCATCTAGTATTTGAAATTTCTA 57.458 33.333 18.64 8.95 0.00 2.10
141 142 9.727627 GTATTTGAAATTTCTATTGCTCTCTGG 57.272 33.333 18.64 0.00 0.00 3.86
142 143 5.824904 TGAAATTTCTATTGCTCTCTGGC 57.175 39.130 18.64 0.00 0.00 4.85
143 144 4.641989 TGAAATTTCTATTGCTCTCTGGCC 59.358 41.667 18.64 0.00 0.00 5.36
144 145 2.717639 TTTCTATTGCTCTCTGGCCC 57.282 50.000 0.00 0.00 0.00 5.80
145 146 0.465705 TTCTATTGCTCTCTGGCCCG 59.534 55.000 0.00 0.00 0.00 6.13
146 147 1.596477 CTATTGCTCTCTGGCCCGC 60.596 63.158 0.00 0.00 0.00 6.13
147 148 3.106986 TATTGCTCTCTGGCCCGCC 62.107 63.158 0.00 0.00 0.00 6.13
156 157 3.338250 TGGCCCGCCCAGATTTCT 61.338 61.111 0.00 0.00 39.18 2.52
157 158 2.517166 GGCCCGCCCAGATTTCTC 60.517 66.667 0.00 0.00 0.00 2.87
158 159 2.517166 GCCCGCCCAGATTTCTCC 60.517 66.667 0.00 0.00 0.00 3.71
159 160 3.049080 GCCCGCCCAGATTTCTCCT 62.049 63.158 0.00 0.00 0.00 3.69
160 161 1.609783 CCCGCCCAGATTTCTCCTT 59.390 57.895 0.00 0.00 0.00 3.36
161 162 0.749454 CCCGCCCAGATTTCTCCTTG 60.749 60.000 0.00 0.00 0.00 3.61
162 163 0.035056 CCGCCCAGATTTCTCCTTGT 60.035 55.000 0.00 0.00 0.00 3.16
163 164 1.209504 CCGCCCAGATTTCTCCTTGTA 59.790 52.381 0.00 0.00 0.00 2.41
164 165 2.158755 CCGCCCAGATTTCTCCTTGTAT 60.159 50.000 0.00 0.00 0.00 2.29
165 166 3.134458 CGCCCAGATTTCTCCTTGTATC 58.866 50.000 0.00 0.00 0.00 2.24
166 167 3.181461 CGCCCAGATTTCTCCTTGTATCT 60.181 47.826 0.00 0.00 0.00 1.98
167 168 4.384940 GCCCAGATTTCTCCTTGTATCTC 58.615 47.826 0.00 0.00 0.00 2.75
168 169 4.745172 GCCCAGATTTCTCCTTGTATCTCC 60.745 50.000 0.00 0.00 0.00 3.71
429 430 4.731313 AGGAGGACTTGGATGAAAACTT 57.269 40.909 0.00 0.00 0.00 2.66
430 431 5.066913 AGGAGGACTTGGATGAAAACTTT 57.933 39.130 0.00 0.00 0.00 2.66
431 432 5.458595 AGGAGGACTTGGATGAAAACTTTT 58.541 37.500 0.00 0.00 0.00 2.27
432 433 5.899547 AGGAGGACTTGGATGAAAACTTTTT 59.100 36.000 0.00 0.00 0.00 1.94
450 451 3.744238 TTTTTAGCTTTTGGCCACTCC 57.256 42.857 3.88 0.00 43.05 3.85
451 452 1.627864 TTTAGCTTTTGGCCACTCCC 58.372 50.000 3.88 0.00 43.05 4.30
452 453 0.480690 TTAGCTTTTGGCCACTCCCA 59.519 50.000 3.88 0.00 43.05 4.37
453 454 0.480690 TAGCTTTTGGCCACTCCCAA 59.519 50.000 3.88 0.00 42.87 4.12
454 455 1.115326 AGCTTTTGGCCACTCCCAAC 61.115 55.000 3.88 0.00 44.17 3.77
455 456 1.398958 GCTTTTGGCCACTCCCAACA 61.399 55.000 3.88 0.00 44.17 3.33
456 457 0.389025 CTTTTGGCCACTCCCAACAC 59.611 55.000 3.88 0.00 44.17 3.32
457 458 0.032615 TTTTGGCCACTCCCAACACT 60.033 50.000 3.88 0.00 44.17 3.55
458 459 0.467290 TTTGGCCACTCCCAACACTC 60.467 55.000 3.88 0.00 44.17 3.51
459 460 2.034221 GGCCACTCCCAACACTCC 59.966 66.667 0.00 0.00 0.00 3.85
460 461 2.529744 GGCCACTCCCAACACTCCT 61.530 63.158 0.00 0.00 0.00 3.69
461 462 1.198759 GGCCACTCCCAACACTCCTA 61.199 60.000 0.00 0.00 0.00 2.94
462 463 0.912486 GCCACTCCCAACACTCCTAT 59.088 55.000 0.00 0.00 0.00 2.57
463 464 1.282157 GCCACTCCCAACACTCCTATT 59.718 52.381 0.00 0.00 0.00 1.73
464 465 2.290960 GCCACTCCCAACACTCCTATTT 60.291 50.000 0.00 0.00 0.00 1.40
465 466 3.814316 GCCACTCCCAACACTCCTATTTT 60.814 47.826 0.00 0.00 0.00 1.82
466 467 3.758554 CCACTCCCAACACTCCTATTTTG 59.241 47.826 0.00 0.00 0.00 2.44
467 468 3.191371 CACTCCCAACACTCCTATTTTGC 59.809 47.826 0.00 0.00 0.00 3.68
468 469 2.755103 CTCCCAACACTCCTATTTTGCC 59.245 50.000 0.00 0.00 0.00 4.52
469 470 2.109128 TCCCAACACTCCTATTTTGCCA 59.891 45.455 0.00 0.00 0.00 4.92
470 471 3.099141 CCCAACACTCCTATTTTGCCAT 58.901 45.455 0.00 0.00 0.00 4.40
471 472 3.515104 CCCAACACTCCTATTTTGCCATT 59.485 43.478 0.00 0.00 0.00 3.16
472 473 4.497300 CCAACACTCCTATTTTGCCATTG 58.503 43.478 0.00 0.00 0.00 2.82
473 474 4.497300 CAACACTCCTATTTTGCCATTGG 58.503 43.478 0.00 0.00 0.00 3.16
490 491 0.620556 TGGCTCCTCCAACAGAATCC 59.379 55.000 0.00 0.00 43.21 3.01
491 492 0.620556 GGCTCCTCCAACAGAATCCA 59.379 55.000 0.00 0.00 34.01 3.41
492 493 1.213926 GGCTCCTCCAACAGAATCCAT 59.786 52.381 0.00 0.00 34.01 3.41
493 494 2.570135 GCTCCTCCAACAGAATCCATC 58.430 52.381 0.00 0.00 0.00 3.51
494 495 2.172293 GCTCCTCCAACAGAATCCATCT 59.828 50.000 0.00 0.00 39.68 2.90
495 496 3.389329 GCTCCTCCAACAGAATCCATCTA 59.611 47.826 0.00 0.00 36.32 1.98
496 497 4.502950 GCTCCTCCAACAGAATCCATCTAG 60.503 50.000 0.00 0.00 36.32 2.43
497 498 3.389329 TCCTCCAACAGAATCCATCTAGC 59.611 47.826 0.00 0.00 36.32 3.42
498 499 3.390639 CCTCCAACAGAATCCATCTAGCT 59.609 47.826 0.00 0.00 36.32 3.32
499 500 4.502950 CCTCCAACAGAATCCATCTAGCTC 60.503 50.000 0.00 0.00 36.32 4.09
500 501 3.389329 TCCAACAGAATCCATCTAGCTCC 59.611 47.826 0.00 0.00 36.32 4.70
501 502 3.388308 CAACAGAATCCATCTAGCTCCG 58.612 50.000 0.00 0.00 36.32 4.63
502 503 1.342819 ACAGAATCCATCTAGCTCCGC 59.657 52.381 0.00 0.00 36.32 5.54
503 504 0.972883 AGAATCCATCTAGCTCCGCC 59.027 55.000 0.00 0.00 36.32 6.13
504 505 0.681733 GAATCCATCTAGCTCCGCCA 59.318 55.000 0.00 0.00 0.00 5.69
505 506 1.070758 GAATCCATCTAGCTCCGCCAA 59.929 52.381 0.00 0.00 0.00 4.52
506 507 1.356124 ATCCATCTAGCTCCGCCAAT 58.644 50.000 0.00 0.00 0.00 3.16
507 508 0.394192 TCCATCTAGCTCCGCCAATG 59.606 55.000 0.00 0.00 0.00 2.82
508 509 0.107456 CCATCTAGCTCCGCCAATGT 59.893 55.000 0.00 0.00 0.00 2.71
509 510 1.344438 CCATCTAGCTCCGCCAATGTA 59.656 52.381 0.00 0.00 0.00 2.29
510 511 2.611473 CCATCTAGCTCCGCCAATGTAG 60.611 54.545 0.00 0.00 0.00 2.74
511 512 2.067365 TCTAGCTCCGCCAATGTAGA 57.933 50.000 0.00 0.00 0.00 2.59
512 513 1.957177 TCTAGCTCCGCCAATGTAGAG 59.043 52.381 0.00 0.00 0.00 2.43
513 514 1.957177 CTAGCTCCGCCAATGTAGAGA 59.043 52.381 0.00 0.00 0.00 3.10
514 515 1.195115 AGCTCCGCCAATGTAGAGAA 58.805 50.000 0.00 0.00 0.00 2.87
515 516 1.137872 AGCTCCGCCAATGTAGAGAAG 59.862 52.381 0.00 0.00 0.00 2.85
516 517 1.808133 GCTCCGCCAATGTAGAGAAGG 60.808 57.143 0.00 0.00 0.00 3.46
517 518 1.757118 CTCCGCCAATGTAGAGAAGGA 59.243 52.381 0.00 0.00 0.00 3.36
518 519 2.366916 CTCCGCCAATGTAGAGAAGGAT 59.633 50.000 0.00 0.00 0.00 3.24
519 520 2.771943 TCCGCCAATGTAGAGAAGGATT 59.228 45.455 0.00 0.00 0.00 3.01
520 521 3.199946 TCCGCCAATGTAGAGAAGGATTT 59.800 43.478 0.00 0.00 0.00 2.17
521 522 4.407621 TCCGCCAATGTAGAGAAGGATTTA 59.592 41.667 0.00 0.00 0.00 1.40
522 523 4.752101 CCGCCAATGTAGAGAAGGATTTAG 59.248 45.833 0.00 0.00 0.00 1.85
523 524 4.752101 CGCCAATGTAGAGAAGGATTTAGG 59.248 45.833 0.00 0.00 0.00 2.69
524 525 5.453339 CGCCAATGTAGAGAAGGATTTAGGA 60.453 44.000 0.00 0.00 0.00 2.94
525 526 6.357367 GCCAATGTAGAGAAGGATTTAGGAA 58.643 40.000 0.00 0.00 0.00 3.36
526 527 7.001073 GCCAATGTAGAGAAGGATTTAGGAAT 58.999 38.462 0.00 0.00 0.00 3.01
527 528 7.040823 GCCAATGTAGAGAAGGATTTAGGAATG 60.041 40.741 0.00 0.00 0.00 2.67
528 529 7.446625 CCAATGTAGAGAAGGATTTAGGAATGG 59.553 40.741 0.00 0.00 0.00 3.16
529 530 7.937700 ATGTAGAGAAGGATTTAGGAATGGA 57.062 36.000 0.00 0.00 0.00 3.41
530 531 7.366847 TGTAGAGAAGGATTTAGGAATGGAG 57.633 40.000 0.00 0.00 0.00 3.86
531 532 5.303259 AGAGAAGGATTTAGGAATGGAGC 57.697 43.478 0.00 0.00 0.00 4.70
532 533 4.103943 AGAGAAGGATTTAGGAATGGAGCC 59.896 45.833 0.00 0.00 0.00 4.70
533 534 3.788142 AGAAGGATTTAGGAATGGAGCCA 59.212 43.478 0.00 0.00 0.00 4.75
534 535 4.418190 AGAAGGATTTAGGAATGGAGCCAT 59.582 41.667 0.00 0.00 38.46 4.40
535 536 4.109877 AGGATTTAGGAATGGAGCCATG 57.890 45.455 2.18 0.00 36.68 3.66
536 537 3.464833 AGGATTTAGGAATGGAGCCATGT 59.535 43.478 2.18 0.00 36.68 3.21
537 538 3.571401 GGATTTAGGAATGGAGCCATGTG 59.429 47.826 2.18 0.00 36.68 3.21
538 539 2.734755 TTAGGAATGGAGCCATGTGG 57.265 50.000 2.18 0.00 36.68 4.17
539 540 0.846015 TAGGAATGGAGCCATGTGGG 59.154 55.000 2.18 0.00 36.68 4.61
540 541 0.920763 AGGAATGGAGCCATGTGGGA 60.921 55.000 2.18 0.00 40.01 4.37
541 542 0.033208 GGAATGGAGCCATGTGGGAA 60.033 55.000 2.18 0.00 40.01 3.97
542 543 1.412074 GGAATGGAGCCATGTGGGAAT 60.412 52.381 2.18 0.00 40.01 3.01
543 544 1.959282 GAATGGAGCCATGTGGGAATC 59.041 52.381 2.18 0.00 40.01 2.52
544 545 0.928505 ATGGAGCCATGTGGGAATCA 59.071 50.000 0.23 0.00 40.01 2.57
545 546 0.256752 TGGAGCCATGTGGGAATCAG 59.743 55.000 0.54 0.00 40.01 2.90
546 547 0.548031 GGAGCCATGTGGGAATCAGA 59.452 55.000 0.54 0.00 40.01 3.27
547 548 1.064463 GGAGCCATGTGGGAATCAGAA 60.064 52.381 0.54 0.00 40.01 3.02
548 549 2.621407 GGAGCCATGTGGGAATCAGAAA 60.621 50.000 0.54 0.00 40.01 2.52
549 550 3.294214 GAGCCATGTGGGAATCAGAAAT 58.706 45.455 0.54 0.00 40.01 2.17
550 551 3.028850 AGCCATGTGGGAATCAGAAATG 58.971 45.455 0.54 0.00 40.01 2.32
551 552 2.101917 GCCATGTGGGAATCAGAAATGG 59.898 50.000 0.54 0.00 40.01 3.16
552 553 2.101917 CCATGTGGGAATCAGAAATGGC 59.898 50.000 0.00 0.00 40.01 4.40
553 554 2.601240 TGTGGGAATCAGAAATGGCA 57.399 45.000 0.00 0.00 0.00 4.92
554 555 2.886913 TGTGGGAATCAGAAATGGCAA 58.113 42.857 0.00 0.00 0.00 4.52
555 556 2.562298 TGTGGGAATCAGAAATGGCAAC 59.438 45.455 0.00 0.00 0.00 4.17
568 569 4.595629 GCAACATAATGCCGCGAG 57.404 55.556 8.23 0.00 40.49 5.03
569 570 1.721487 GCAACATAATGCCGCGAGT 59.279 52.632 8.23 0.00 40.49 4.18
570 571 0.934496 GCAACATAATGCCGCGAGTA 59.066 50.000 8.23 0.00 40.49 2.59
571 572 1.070577 GCAACATAATGCCGCGAGTAG 60.071 52.381 8.23 0.00 40.49 2.57
572 573 1.526887 CAACATAATGCCGCGAGTAGG 59.473 52.381 8.23 0.00 0.00 3.18
573 574 0.750850 ACATAATGCCGCGAGTAGGT 59.249 50.000 8.23 0.00 0.00 3.08
574 575 1.958579 ACATAATGCCGCGAGTAGGTA 59.041 47.619 8.23 0.00 0.00 3.08
575 576 2.363038 ACATAATGCCGCGAGTAGGTAA 59.637 45.455 8.23 0.00 0.00 2.85
576 577 3.006537 ACATAATGCCGCGAGTAGGTAAT 59.993 43.478 8.23 0.00 0.00 1.89
577 578 1.865865 AATGCCGCGAGTAGGTAATG 58.134 50.000 8.23 0.00 0.00 1.90
578 579 0.600255 ATGCCGCGAGTAGGTAATGC 60.600 55.000 8.23 0.00 0.00 3.56
579 580 1.227147 GCCGCGAGTAGGTAATGCA 60.227 57.895 8.23 0.00 0.00 3.96
580 581 0.600255 GCCGCGAGTAGGTAATGCAT 60.600 55.000 8.23 0.00 0.00 3.96
581 582 1.336517 GCCGCGAGTAGGTAATGCATA 60.337 52.381 8.23 0.00 0.00 3.14
582 583 2.325761 CCGCGAGTAGGTAATGCATAC 58.674 52.381 8.23 0.00 34.82 2.39
583 584 2.287970 CCGCGAGTAGGTAATGCATACA 60.288 50.000 8.23 0.00 36.87 2.29
584 585 3.377439 CGCGAGTAGGTAATGCATACAA 58.623 45.455 0.00 0.00 36.87 2.41
585 586 3.799963 CGCGAGTAGGTAATGCATACAAA 59.200 43.478 0.00 0.00 36.87 2.83
586 587 4.269123 CGCGAGTAGGTAATGCATACAAAA 59.731 41.667 0.00 0.00 36.87 2.44
587 588 5.556382 CGCGAGTAGGTAATGCATACAAAAG 60.556 44.000 0.00 0.00 36.87 2.27
592 593 7.762382 AGTAGGTAATGCATACAAAAGAAAGC 58.238 34.615 0.00 0.00 36.87 3.51
597 598 8.223100 GGTAATGCATACAAAAGAAAGCAAAAG 58.777 33.333 0.00 0.00 36.14 2.27
602 603 7.119360 GCATACAAAAGAAAGCAAAAGTTGTC 58.881 34.615 0.00 0.00 0.00 3.18
612 613 4.737054 AGCAAAAGTTGTCTGTGAAACTG 58.263 39.130 0.00 0.00 36.75 3.16
622 623 7.439655 AGTTGTCTGTGAAACTGAAAGATACTC 59.560 37.037 0.00 0.00 46.54 2.59
623 624 7.055667 TGTCTGTGAAACTGAAAGATACTCT 57.944 36.000 0.00 0.00 46.54 3.24
624 625 6.925718 TGTCTGTGAAACTGAAAGATACTCTG 59.074 38.462 0.00 0.00 46.54 3.35
625 626 7.148641 GTCTGTGAAACTGAAAGATACTCTGA 58.851 38.462 0.00 0.00 46.54 3.27
626 627 7.653713 GTCTGTGAAACTGAAAGATACTCTGAA 59.346 37.037 0.00 0.00 46.54 3.02
627 628 8.204160 TCTGTGAAACTGAAAGATACTCTGAAA 58.796 33.333 0.00 0.00 42.05 2.69
628 629 8.370493 TGTGAAACTGAAAGATACTCTGAAAG 57.630 34.615 0.00 0.00 38.04 2.62
629 630 8.204160 TGTGAAACTGAAAGATACTCTGAAAGA 58.796 33.333 0.00 0.00 38.35 2.52
630 631 9.046296 GTGAAACTGAAAGATACTCTGAAAGAA 57.954 33.333 0.00 0.00 39.69 2.52
634 635 8.825667 ACTGAAAGATACTCTGAAAGAAACTC 57.174 34.615 0.00 0.00 39.69 3.01
647 648 7.284034 TCTGAAAGAAACTCTGAAAGAAAGCAT 59.716 33.333 0.00 0.00 42.04 3.79
658 659 4.022068 TGAAAGAAAGCATGGTGTTGATCC 60.022 41.667 0.00 0.00 0.00 3.36
664 665 4.895668 AGCATGGTGTTGATCCAATTTT 57.104 36.364 0.00 0.00 38.52 1.82
670 671 7.681543 GCATGGTGTTGATCCAATTTTGTTTTT 60.682 33.333 0.00 0.00 38.52 1.94
706 711 4.919754 GCTTTTCAGATGTCATTTGACCAC 59.080 41.667 5.57 2.87 44.15 4.16
707 712 5.452078 TTTTCAGATGTCATTTGACCACC 57.548 39.130 5.57 0.00 44.15 4.61
724 729 1.720852 CACCAAAATTTGCACGCTAGC 59.279 47.619 4.06 4.06 0.00 3.42
731 736 1.083806 TTTGCACGCTAGCTCATCCG 61.084 55.000 13.93 0.00 34.99 4.18
749 754 3.016736 TCCGAGCATCTTGGATTTTTCC 58.983 45.455 0.00 0.00 38.98 3.13
751 756 3.019564 CGAGCATCTTGGATTTTTCCCT 58.980 45.455 0.00 0.00 0.00 4.20
752 757 4.199310 CGAGCATCTTGGATTTTTCCCTA 58.801 43.478 0.00 0.00 0.00 3.53
753 758 4.035675 CGAGCATCTTGGATTTTTCCCTAC 59.964 45.833 0.00 0.00 0.00 3.18
754 759 5.196695 GAGCATCTTGGATTTTTCCCTACT 58.803 41.667 0.00 0.00 0.00 2.57
814 827 9.886132 GGGATAGAAGTTTTTATCTACTGTTCA 57.114 33.333 7.74 0.00 31.35 3.18
831 844 0.904865 TCACCACCGAGGCTCATCTT 60.905 55.000 15.95 0.00 43.14 2.40
846 862 7.064866 AGGCTCATCTTTGGATTATTGAATCA 58.935 34.615 0.51 0.00 42.95 2.57
847 863 7.728981 AGGCTCATCTTTGGATTATTGAATCAT 59.271 33.333 0.51 0.00 42.95 2.45
851 867 8.139350 TCATCTTTGGATTATTGAATCATGCAC 58.861 33.333 0.00 0.00 42.95 4.57
868 884 1.176527 CACAAGTTACCCAGCCCATG 58.823 55.000 0.00 0.00 0.00 3.66
875 891 3.011257 AGTTACCCAGCCCATGTACATTT 59.989 43.478 5.37 0.00 0.00 2.32
881 897 3.613661 CCCATGTACATTTGGGCCT 57.386 52.632 19.32 0.00 45.83 5.19
882 898 1.864669 CCCATGTACATTTGGGCCTT 58.135 50.000 19.32 0.00 45.83 4.35
883 899 2.187100 CCCATGTACATTTGGGCCTTT 58.813 47.619 19.32 0.00 45.83 3.11
884 900 3.370104 CCCATGTACATTTGGGCCTTTA 58.630 45.455 19.32 0.00 45.83 1.85
886 902 4.023291 CCATGTACATTTGGGCCTTTAGT 58.977 43.478 5.37 1.01 0.00 2.24
887 903 4.466015 CCATGTACATTTGGGCCTTTAGTT 59.534 41.667 5.37 0.00 0.00 2.24
888 904 5.654650 CCATGTACATTTGGGCCTTTAGTTA 59.345 40.000 5.37 0.00 0.00 2.24
889 905 6.153680 CCATGTACATTTGGGCCTTTAGTTAA 59.846 38.462 5.37 0.00 0.00 2.01
891 907 4.776795 ACATTTGGGCCTTTAGTTAACG 57.223 40.909 4.53 0.00 0.00 3.18
892 908 3.508402 ACATTTGGGCCTTTAGTTAACGG 59.492 43.478 4.53 0.00 0.00 4.44
893 909 2.203470 TTGGGCCTTTAGTTAACGGG 57.797 50.000 4.53 3.15 0.00 5.28
894 910 0.322726 TGGGCCTTTAGTTAACGGGC 60.323 55.000 19.23 19.23 45.56 6.13
895 911 0.034767 GGGCCTTTAGTTAACGGGCT 60.035 55.000 23.30 3.41 45.57 5.19
896 912 1.210234 GGGCCTTTAGTTAACGGGCTA 59.790 52.381 23.30 2.59 45.57 3.93
897 913 2.558378 GGCCTTTAGTTAACGGGCTAG 58.442 52.381 23.30 10.26 43.77 3.42
898 914 1.938577 GCCTTTAGTTAACGGGCTAGC 59.061 52.381 19.76 6.04 39.68 3.42
899 915 2.419713 GCCTTTAGTTAACGGGCTAGCT 60.420 50.000 15.72 0.00 39.68 3.32
900 916 3.195661 CCTTTAGTTAACGGGCTAGCTG 58.804 50.000 15.72 10.26 0.00 4.24
901 917 2.304751 TTAGTTAACGGGCTAGCTGC 57.695 50.000 15.72 0.00 41.94 5.25
902 918 1.481871 TAGTTAACGGGCTAGCTGCT 58.518 50.000 15.72 7.57 42.39 4.24
903 919 0.613777 AGTTAACGGGCTAGCTGCTT 59.386 50.000 15.72 5.68 42.39 3.91
904 920 0.727398 GTTAACGGGCTAGCTGCTTG 59.273 55.000 15.72 7.19 42.39 4.01
905 921 0.611200 TTAACGGGCTAGCTGCTTGA 59.389 50.000 15.72 0.00 42.39 3.02
906 922 0.611200 TAACGGGCTAGCTGCTTGAA 59.389 50.000 15.72 0.00 42.39 2.69
907 923 0.250727 AACGGGCTAGCTGCTTGAAA 60.251 50.000 15.72 0.00 42.39 2.69
913 929 2.292845 GGCTAGCTGCTTGAAATGGATC 59.707 50.000 15.72 0.00 42.39 3.36
924 940 1.334869 GAAATGGATCCGCATTCGCTT 59.665 47.619 7.39 0.00 35.30 4.68
925 941 0.947244 AATGGATCCGCATTCGCTTC 59.053 50.000 7.39 0.00 35.30 3.86
926 942 0.179048 ATGGATCCGCATTCGCTTCA 60.179 50.000 7.39 0.00 35.30 3.02
927 943 1.089481 TGGATCCGCATTCGCTTCAC 61.089 55.000 7.39 0.00 35.30 3.18
928 944 1.089481 GGATCCGCATTCGCTTCACA 61.089 55.000 0.00 0.00 35.30 3.58
929 945 0.726827 GATCCGCATTCGCTTCACAA 59.273 50.000 0.00 0.00 35.30 3.33
930 946 1.130373 GATCCGCATTCGCTTCACAAA 59.870 47.619 0.00 0.00 35.30 2.83
932 948 0.729140 CCGCATTCGCTTCACAAACC 60.729 55.000 0.00 0.00 35.30 3.27
933 949 0.729140 CGCATTCGCTTCACAAACCC 60.729 55.000 0.00 0.00 35.30 4.11
934 950 0.598065 GCATTCGCTTCACAAACCCT 59.402 50.000 0.00 0.00 34.30 4.34
935 951 1.401539 GCATTCGCTTCACAAACCCTC 60.402 52.381 0.00 0.00 34.30 4.30
936 952 1.200020 CATTCGCTTCACAAACCCTCC 59.800 52.381 0.00 0.00 0.00 4.30
1296 1334 1.913762 CCTCCACTTCGGGGACAGT 60.914 63.158 0.00 0.00 37.51 3.55
1971 2015 2.861462 TCTTCAACAAAGGTTTGCCG 57.139 45.000 2.27 0.00 41.79 5.69
1973 2017 0.179097 TTCAACAAAGGTTTGCCGCC 60.179 50.000 2.27 0.00 41.79 6.13
1975 2019 2.060980 AACAAAGGTTTGCCGCCCA 61.061 52.632 2.27 0.00 41.79 5.36
1976 2020 1.406860 AACAAAGGTTTGCCGCCCAT 61.407 50.000 2.27 0.00 41.79 4.00
1977 2021 1.370810 CAAAGGTTTGCCGCCCATT 59.629 52.632 0.00 0.00 40.50 3.16
1978 2022 0.670239 CAAAGGTTTGCCGCCCATTC 60.670 55.000 0.00 0.00 40.50 2.67
1991 2035 1.673168 CCCATTCTAGTGCTTGCCTC 58.327 55.000 0.00 0.00 0.00 4.70
2030 2074 4.154015 CGATTTGTTGTGTTAGCATCTCCA 59.846 41.667 0.00 0.00 0.00 3.86
2032 2079 6.594788 ATTTGTTGTGTTAGCATCTCCAAT 57.405 33.333 0.00 0.00 0.00 3.16
2055 2102 5.243426 AGCTTCGTTAGTTTTTGCTCAAA 57.757 34.783 0.00 0.00 0.00 2.69
2108 2155 6.721571 TCAGTGATTCAAGATTTTCGTACC 57.278 37.500 0.00 0.00 0.00 3.34
2126 2175 1.133575 ACCGAGGTTCATAGGGATCGA 60.134 52.381 0.00 0.00 32.13 3.59
2134 2183 4.154918 GGTTCATAGGGATCGATGAATTGC 59.845 45.833 0.54 6.79 43.37 3.56
2228 4096 7.671495 ATTGGGTTAAAATGATGCTTGTTTC 57.329 32.000 0.00 0.00 0.00 2.78
2243 4142 3.663995 TGTTTCTGGCATTGACATTGG 57.336 42.857 0.00 0.00 0.00 3.16
2926 4863 6.479972 TTTGATGACCTAGGGTATAGTGTG 57.520 41.667 14.81 0.00 35.25 3.82
3137 5080 6.515272 TTGTTAGAAGAATCCAGAAATGGC 57.485 37.500 0.00 0.00 0.00 4.40
3162 5107 7.439356 GCATCAACTACTAGCATCTTGACATTA 59.561 37.037 0.00 0.00 0.00 1.90
3252 5201 6.260050 TGCTAAGTGTAACCTTTTCAGTTCTG 59.740 38.462 0.00 0.00 37.80 3.02
3341 5292 5.732528 GCCTGTAATGTCATCATTGAGCTTG 60.733 44.000 0.00 0.00 43.17 4.01
3347 5476 3.119637 TGTCATCATTGAGCTTGCATGTG 60.120 43.478 1.14 0.00 30.85 3.21
3353 5482 3.853831 TTGAGCTTGCATGTGGTAATG 57.146 42.857 1.14 0.00 0.00 1.90
3369 5498 5.354234 GTGGTAATGTTTATGGTCTGTCAGG 59.646 44.000 0.00 0.00 0.00 3.86
3396 5525 9.999660 CATATCCCTGATAATGAGATAATGAGG 57.000 37.037 0.00 0.00 0.00 3.86
3595 5742 8.045507 ACATGTTTGCATATATATAGCTGCTCT 58.954 33.333 4.91 0.00 35.66 4.09
3658 5805 5.743467 TGTAGCTTCACATGTTAAAACACG 58.257 37.500 0.00 0.00 42.51 4.49
3659 5806 4.223320 AGCTTCACATGTTAAAACACGG 57.777 40.909 0.00 0.00 42.51 4.94
3660 5807 3.880490 AGCTTCACATGTTAAAACACGGA 59.120 39.130 0.00 0.00 42.51 4.69
3661 5808 4.518970 AGCTTCACATGTTAAAACACGGAT 59.481 37.500 0.00 0.00 42.51 4.18
3662 5809 4.616802 GCTTCACATGTTAAAACACGGATG 59.383 41.667 0.00 0.00 42.51 3.51
3663 5810 5.757886 CTTCACATGTTAAAACACGGATGT 58.242 37.500 0.00 0.00 42.51 3.06
3673 5820 1.892209 ACACGGATGTTGTTTCCTCC 58.108 50.000 0.00 0.00 34.46 4.30
3674 5821 1.420138 ACACGGATGTTGTTTCCTCCT 59.580 47.619 0.00 0.00 34.46 3.69
3675 5822 2.158667 ACACGGATGTTGTTTCCTCCTT 60.159 45.455 0.00 0.00 34.46 3.36
3676 5823 2.226437 CACGGATGTTGTTTCCTCCTTG 59.774 50.000 0.00 0.00 0.00 3.61
3677 5824 1.200020 CGGATGTTGTTTCCTCCTTGC 59.800 52.381 0.00 0.00 0.00 4.01
3678 5825 2.519013 GGATGTTGTTTCCTCCTTGCT 58.481 47.619 0.00 0.00 0.00 3.91
3679 5826 2.893489 GGATGTTGTTTCCTCCTTGCTT 59.107 45.455 0.00 0.00 0.00 3.91
3680 5827 4.079253 GGATGTTGTTTCCTCCTTGCTTA 58.921 43.478 0.00 0.00 0.00 3.09
3681 5828 4.156739 GGATGTTGTTTCCTCCTTGCTTAG 59.843 45.833 0.00 0.00 0.00 2.18
3682 5829 4.164843 TGTTGTTTCCTCCTTGCTTAGT 57.835 40.909 0.00 0.00 0.00 2.24
3683 5830 3.882888 TGTTGTTTCCTCCTTGCTTAGTG 59.117 43.478 0.00 0.00 0.00 2.74
3684 5831 3.857157 TGTTTCCTCCTTGCTTAGTGT 57.143 42.857 0.00 0.00 0.00 3.55
3685 5832 3.476552 TGTTTCCTCCTTGCTTAGTGTG 58.523 45.455 0.00 0.00 0.00 3.82
3686 5833 3.135712 TGTTTCCTCCTTGCTTAGTGTGA 59.864 43.478 0.00 0.00 0.00 3.58
3687 5834 4.202461 TGTTTCCTCCTTGCTTAGTGTGAT 60.202 41.667 0.00 0.00 0.00 3.06
3688 5835 5.012664 TGTTTCCTCCTTGCTTAGTGTGATA 59.987 40.000 0.00 0.00 0.00 2.15
3689 5836 5.957771 TTCCTCCTTGCTTAGTGTGATAT 57.042 39.130 0.00 0.00 0.00 1.63
3690 5837 5.282055 TCCTCCTTGCTTAGTGTGATATG 57.718 43.478 0.00 0.00 0.00 1.78
3691 5838 3.812053 CCTCCTTGCTTAGTGTGATATGC 59.188 47.826 0.00 0.00 0.00 3.14
3692 5839 4.444022 CCTCCTTGCTTAGTGTGATATGCT 60.444 45.833 0.00 0.00 0.00 3.79
3693 5840 4.445453 TCCTTGCTTAGTGTGATATGCTG 58.555 43.478 0.00 0.00 0.00 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.271458 TGGCATGATCAGTTTAGGATAACTAAA 58.729 33.333 0.09 0.00 46.58 1.85
1 2 7.715249 GTGGCATGATCAGTTTAGGATAACTAA 59.285 37.037 0.09 0.00 39.84 2.24
2 3 7.147567 TGTGGCATGATCAGTTTAGGATAACTA 60.148 37.037 0.09 0.00 36.24 2.24
3 4 6.058183 GTGGCATGATCAGTTTAGGATAACT 58.942 40.000 0.09 0.00 38.87 2.24
4 5 5.822519 TGTGGCATGATCAGTTTAGGATAAC 59.177 40.000 0.09 0.00 0.00 1.89
5 6 6.000246 TGTGGCATGATCAGTTTAGGATAA 58.000 37.500 0.09 0.00 0.00 1.75
6 7 5.628797 TGTGGCATGATCAGTTTAGGATA 57.371 39.130 0.09 0.00 0.00 2.59
7 8 4.508551 TGTGGCATGATCAGTTTAGGAT 57.491 40.909 0.09 0.00 0.00 3.24
8 9 3.998913 TGTGGCATGATCAGTTTAGGA 57.001 42.857 0.09 0.00 0.00 2.94
9 10 4.012374 AGTTGTGGCATGATCAGTTTAGG 58.988 43.478 0.09 0.00 0.00 2.69
10 11 5.396484 CAAGTTGTGGCATGATCAGTTTAG 58.604 41.667 0.09 0.00 0.00 1.85
11 12 4.321156 GCAAGTTGTGGCATGATCAGTTTA 60.321 41.667 0.09 0.00 0.00 2.01
12 13 3.553508 GCAAGTTGTGGCATGATCAGTTT 60.554 43.478 0.09 0.00 0.00 2.66
13 14 2.029649 GCAAGTTGTGGCATGATCAGTT 60.030 45.455 0.09 0.00 0.00 3.16
14 15 1.542915 GCAAGTTGTGGCATGATCAGT 59.457 47.619 0.09 0.00 0.00 3.41
15 16 1.816835 AGCAAGTTGTGGCATGATCAG 59.183 47.619 0.09 0.00 0.00 2.90
16 17 1.913778 AGCAAGTTGTGGCATGATCA 58.086 45.000 4.48 0.00 0.00 2.92
17 18 3.308438 AAAGCAAGTTGTGGCATGATC 57.692 42.857 4.48 0.00 0.00 2.92
18 19 4.870123 TTAAAGCAAGTTGTGGCATGAT 57.130 36.364 4.48 0.00 0.00 2.45
19 20 4.340666 TCTTTAAAGCAAGTTGTGGCATGA 59.659 37.500 10.51 0.00 0.00 3.07
20 21 4.445385 GTCTTTAAAGCAAGTTGTGGCATG 59.555 41.667 10.51 0.00 0.00 4.06
21 22 4.342092 AGTCTTTAAAGCAAGTTGTGGCAT 59.658 37.500 10.51 0.00 0.00 4.40
22 23 3.699038 AGTCTTTAAAGCAAGTTGTGGCA 59.301 39.130 10.51 0.00 0.00 4.92
23 24 4.307443 AGTCTTTAAAGCAAGTTGTGGC 57.693 40.909 10.51 0.00 0.00 5.01
24 25 7.078228 GTGATAGTCTTTAAAGCAAGTTGTGG 58.922 38.462 10.51 0.00 0.00 4.17
25 26 7.639039 TGTGATAGTCTTTAAAGCAAGTTGTG 58.361 34.615 10.51 0.00 0.00 3.33
26 27 7.801716 TGTGATAGTCTTTAAAGCAAGTTGT 57.198 32.000 10.51 0.00 0.00 3.32
27 28 9.760660 GTATGTGATAGTCTTTAAAGCAAGTTG 57.239 33.333 10.51 0.00 0.00 3.16
28 29 9.502091 TGTATGTGATAGTCTTTAAAGCAAGTT 57.498 29.630 10.51 0.00 0.00 2.66
29 30 8.936864 GTGTATGTGATAGTCTTTAAAGCAAGT 58.063 33.333 10.51 0.23 0.00 3.16
30 31 8.935844 TGTGTATGTGATAGTCTTTAAAGCAAG 58.064 33.333 10.51 0.00 0.00 4.01
31 32 8.840833 TGTGTATGTGATAGTCTTTAAAGCAA 57.159 30.769 10.51 0.00 0.00 3.91
32 33 8.882736 CATGTGTATGTGATAGTCTTTAAAGCA 58.117 33.333 10.51 1.40 0.00 3.91
33 34 7.852945 GCATGTGTATGTGATAGTCTTTAAAGC 59.147 37.037 10.51 6.00 36.65 3.51
34 35 9.102757 AGCATGTGTATGTGATAGTCTTTAAAG 57.897 33.333 9.04 9.04 36.65 1.85
35 36 9.448438 AAGCATGTGTATGTGATAGTCTTTAAA 57.552 29.630 0.00 0.00 36.65 1.52
36 37 9.448438 AAAGCATGTGTATGTGATAGTCTTTAA 57.552 29.630 0.00 0.00 36.65 1.52
38 39 7.928307 AAAGCATGTGTATGTGATAGTCTTT 57.072 32.000 0.00 0.00 36.65 2.52
39 40 9.448438 TTTAAAGCATGTGTATGTGATAGTCTT 57.552 29.630 0.00 0.00 36.65 3.01
40 41 9.102757 CTTTAAAGCATGTGTATGTGATAGTCT 57.897 33.333 1.47 0.00 36.65 3.24
41 42 9.098355 TCTTTAAAGCATGTGTATGTGATAGTC 57.902 33.333 10.51 0.00 36.65 2.59
42 43 8.883731 GTCTTTAAAGCATGTGTATGTGATAGT 58.116 33.333 10.51 0.00 36.65 2.12
43 44 9.102757 AGTCTTTAAAGCATGTGTATGTGATAG 57.897 33.333 10.51 0.00 36.65 2.08
44 45 9.098355 GAGTCTTTAAAGCATGTGTATGTGATA 57.902 33.333 10.51 0.00 36.65 2.15
45 46 7.201556 CGAGTCTTTAAAGCATGTGTATGTGAT 60.202 37.037 10.51 0.00 36.65 3.06
46 47 6.090763 CGAGTCTTTAAAGCATGTGTATGTGA 59.909 38.462 10.51 0.00 36.65 3.58
47 48 6.243551 CGAGTCTTTAAAGCATGTGTATGTG 58.756 40.000 10.51 0.00 36.65 3.21
48 49 5.351465 CCGAGTCTTTAAAGCATGTGTATGT 59.649 40.000 10.51 0.00 36.65 2.29
49 50 5.727791 GCCGAGTCTTTAAAGCATGTGTATG 60.728 44.000 10.51 0.00 37.36 2.39
50 51 4.332819 GCCGAGTCTTTAAAGCATGTGTAT 59.667 41.667 10.51 0.00 0.00 2.29
51 52 3.682858 GCCGAGTCTTTAAAGCATGTGTA 59.317 43.478 10.51 0.00 0.00 2.90
52 53 2.484264 GCCGAGTCTTTAAAGCATGTGT 59.516 45.455 10.51 0.00 0.00 3.72
53 54 2.483877 TGCCGAGTCTTTAAAGCATGTG 59.516 45.455 10.51 0.63 0.00 3.21
54 55 2.778299 TGCCGAGTCTTTAAAGCATGT 58.222 42.857 10.51 0.00 0.00 3.21
56 57 2.098117 GCATGCCGAGTCTTTAAAGCAT 59.902 45.455 6.36 7.36 41.40 3.79
57 58 1.468520 GCATGCCGAGTCTTTAAAGCA 59.531 47.619 6.36 5.23 34.28 3.91
58 59 1.202188 GGCATGCCGAGTCTTTAAAGC 60.202 52.381 23.48 6.00 0.00 3.51
59 60 2.083774 TGGCATGCCGAGTCTTTAAAG 58.916 47.619 30.87 9.04 39.42 1.85
60 61 2.192664 TGGCATGCCGAGTCTTTAAA 57.807 45.000 30.87 7.13 39.42 1.52
61 62 2.192664 TTGGCATGCCGAGTCTTTAA 57.807 45.000 30.87 14.62 39.42 1.52
62 63 2.016318 CATTGGCATGCCGAGTCTTTA 58.984 47.619 30.05 8.96 39.42 1.85
63 64 0.813184 CATTGGCATGCCGAGTCTTT 59.187 50.000 30.05 11.90 39.42 2.52
64 65 2.485677 CATTGGCATGCCGAGTCTT 58.514 52.632 30.05 12.29 39.42 3.01
65 66 4.230603 CATTGGCATGCCGAGTCT 57.769 55.556 30.05 12.67 39.42 3.24
73 74 0.179210 GCGCAAAAAGCATTGGCATG 60.179 50.000 0.30 0.00 46.13 4.06
74 75 1.300266 GGCGCAAAAAGCATTGGCAT 61.300 50.000 10.83 0.00 46.13 4.40
75 76 1.960250 GGCGCAAAAAGCATTGGCA 60.960 52.632 10.83 0.00 46.13 4.92
76 77 1.300266 ATGGCGCAAAAAGCATTGGC 61.300 50.000 10.83 0.00 46.13 4.52
77 78 0.722848 GATGGCGCAAAAAGCATTGG 59.277 50.000 10.83 0.00 46.13 3.16
78 79 0.367548 CGATGGCGCAAAAAGCATTG 59.632 50.000 10.83 2.04 46.13 2.82
79 80 0.737019 CCGATGGCGCAAAAAGCATT 60.737 50.000 10.83 0.00 46.13 3.56
80 81 1.153784 CCGATGGCGCAAAAAGCAT 60.154 52.632 10.83 1.13 46.13 3.79
81 82 2.257980 CCGATGGCGCAAAAAGCA 59.742 55.556 10.83 0.00 46.13 3.91
82 83 3.181290 GCCGATGGCGCAAAAAGC 61.181 61.111 10.83 1.83 39.62 3.51
94 95 4.467084 ATGACCCGTTGCGCCGAT 62.467 61.111 4.18 0.00 0.00 4.18
96 97 3.709880 TAGATGACCCGTTGCGCCG 62.710 63.158 4.18 0.94 0.00 6.46
97 98 1.883084 CTAGATGACCCGTTGCGCC 60.883 63.158 4.18 0.00 0.00 6.53
98 99 0.101759 TACTAGATGACCCGTTGCGC 59.898 55.000 0.00 0.00 0.00 6.09
99 100 2.795175 ATACTAGATGACCCGTTGCG 57.205 50.000 0.00 0.00 0.00 4.85
100 101 4.439057 TCAAATACTAGATGACCCGTTGC 58.561 43.478 0.00 0.00 0.00 4.17
101 102 6.978343 TTTCAAATACTAGATGACCCGTTG 57.022 37.500 0.00 0.00 0.00 4.10
102 103 8.575649 AAATTTCAAATACTAGATGACCCGTT 57.424 30.769 0.00 0.00 0.00 4.44
103 104 8.047310 AGAAATTTCAAATACTAGATGACCCGT 58.953 33.333 19.99 0.00 0.00 5.28
104 105 8.438676 AGAAATTTCAAATACTAGATGACCCG 57.561 34.615 19.99 0.00 0.00 5.28
115 116 9.727627 CCAGAGAGCAATAGAAATTTCAAATAC 57.272 33.333 19.99 6.68 0.00 1.89
116 117 8.408601 GCCAGAGAGCAATAGAAATTTCAAATA 58.591 33.333 19.99 4.67 0.00 1.40
117 118 7.263496 GCCAGAGAGCAATAGAAATTTCAAAT 58.737 34.615 19.99 10.10 0.00 2.32
118 119 6.350445 GGCCAGAGAGCAATAGAAATTTCAAA 60.350 38.462 19.99 8.20 0.00 2.69
119 120 5.126061 GGCCAGAGAGCAATAGAAATTTCAA 59.874 40.000 19.99 0.00 0.00 2.69
120 121 4.641989 GGCCAGAGAGCAATAGAAATTTCA 59.358 41.667 19.99 6.84 0.00 2.69
121 122 4.037327 GGGCCAGAGAGCAATAGAAATTTC 59.963 45.833 10.33 10.33 0.00 2.17
122 123 3.956848 GGGCCAGAGAGCAATAGAAATTT 59.043 43.478 4.39 0.00 0.00 1.82
123 124 3.560105 GGGCCAGAGAGCAATAGAAATT 58.440 45.455 4.39 0.00 0.00 1.82
124 125 2.486191 CGGGCCAGAGAGCAATAGAAAT 60.486 50.000 4.39 0.00 0.00 2.17
125 126 1.134401 CGGGCCAGAGAGCAATAGAAA 60.134 52.381 4.39 0.00 0.00 2.52
126 127 0.465705 CGGGCCAGAGAGCAATAGAA 59.534 55.000 4.39 0.00 0.00 2.10
127 128 2.032860 GCGGGCCAGAGAGCAATAGA 62.033 60.000 7.23 0.00 0.00 1.98
128 129 1.596477 GCGGGCCAGAGAGCAATAG 60.596 63.158 7.23 0.00 0.00 1.73
129 130 2.505982 GCGGGCCAGAGAGCAATA 59.494 61.111 7.23 0.00 0.00 1.90
130 131 4.496336 GGCGGGCCAGAGAGCAAT 62.496 66.667 7.23 0.00 35.81 3.56
135 136 4.804420 ATCTGGGCGGGCCAGAGA 62.804 66.667 43.05 29.88 45.69 3.10
136 137 3.350031 AAATCTGGGCGGGCCAGAG 62.350 63.158 43.05 26.31 45.69 3.35
137 138 3.338250 AAATCTGGGCGGGCCAGA 61.338 61.111 43.32 43.32 46.39 3.86
138 139 2.830370 GAAATCTGGGCGGGCCAG 60.830 66.667 37.19 37.19 37.98 4.85
139 140 3.338250 AGAAATCTGGGCGGGCCA 61.338 61.111 22.99 22.99 37.98 5.36
140 141 2.517166 GAGAAATCTGGGCGGGCC 60.517 66.667 14.65 14.65 0.00 5.80
141 142 2.517166 GGAGAAATCTGGGCGGGC 60.517 66.667 0.00 0.00 0.00 6.13
142 143 0.749454 CAAGGAGAAATCTGGGCGGG 60.749 60.000 0.00 0.00 0.00 6.13
143 144 0.035056 ACAAGGAGAAATCTGGGCGG 60.035 55.000 0.00 0.00 0.00 6.13
144 145 2.691409 TACAAGGAGAAATCTGGGCG 57.309 50.000 0.00 0.00 0.00 6.13
145 146 4.384940 GAGATACAAGGAGAAATCTGGGC 58.615 47.826 0.00 0.00 0.00 5.36
146 147 4.967036 GGAGATACAAGGAGAAATCTGGG 58.033 47.826 0.00 0.00 0.00 4.45
408 409 4.731313 AAGTTTTCATCCAAGTCCTCCT 57.269 40.909 0.00 0.00 0.00 3.69
409 410 5.791336 AAAAGTTTTCATCCAAGTCCTCC 57.209 39.130 0.00 0.00 0.00 4.30
430 431 2.367241 GGGAGTGGCCAAAAGCTAAAAA 59.633 45.455 7.24 0.00 43.05 1.94
431 432 1.967779 GGGAGTGGCCAAAAGCTAAAA 59.032 47.619 7.24 0.00 43.05 1.52
432 433 1.133325 TGGGAGTGGCCAAAAGCTAAA 60.133 47.619 7.24 0.00 43.05 1.85
433 434 0.480690 TGGGAGTGGCCAAAAGCTAA 59.519 50.000 7.24 0.00 43.05 3.09
434 435 0.480690 TTGGGAGTGGCCAAAAGCTA 59.519 50.000 7.24 0.00 43.05 3.32
435 436 1.115326 GTTGGGAGTGGCCAAAAGCT 61.115 55.000 7.24 0.00 43.05 3.74
436 437 1.367471 GTTGGGAGTGGCCAAAAGC 59.633 57.895 7.24 0.00 38.95 3.51
437 438 0.389025 GTGTTGGGAGTGGCCAAAAG 59.611 55.000 7.24 0.00 38.95 2.27
438 439 0.032615 AGTGTTGGGAGTGGCCAAAA 60.033 50.000 7.24 0.00 38.95 2.44
439 440 0.467290 GAGTGTTGGGAGTGGCCAAA 60.467 55.000 7.24 0.00 38.95 3.28
440 441 1.150536 GAGTGTTGGGAGTGGCCAA 59.849 57.895 7.24 0.00 38.95 4.52
441 442 2.829384 GGAGTGTTGGGAGTGGCCA 61.829 63.158 0.00 0.00 38.95 5.36
442 443 1.198759 TAGGAGTGTTGGGAGTGGCC 61.199 60.000 0.00 0.00 0.00 5.36
443 444 0.912486 ATAGGAGTGTTGGGAGTGGC 59.088 55.000 0.00 0.00 0.00 5.01
444 445 3.721087 AAATAGGAGTGTTGGGAGTGG 57.279 47.619 0.00 0.00 0.00 4.00
445 446 3.191371 GCAAAATAGGAGTGTTGGGAGTG 59.809 47.826 0.00 0.00 0.00 3.51
446 447 3.421844 GCAAAATAGGAGTGTTGGGAGT 58.578 45.455 0.00 0.00 0.00 3.85
447 448 2.755103 GGCAAAATAGGAGTGTTGGGAG 59.245 50.000 0.00 0.00 0.00 4.30
448 449 2.109128 TGGCAAAATAGGAGTGTTGGGA 59.891 45.455 0.00 0.00 0.00 4.37
449 450 2.524306 TGGCAAAATAGGAGTGTTGGG 58.476 47.619 0.00 0.00 0.00 4.12
450 451 4.497300 CAATGGCAAAATAGGAGTGTTGG 58.503 43.478 0.00 0.00 0.00 3.77
451 452 4.497300 CCAATGGCAAAATAGGAGTGTTG 58.503 43.478 0.00 0.00 0.00 3.33
452 453 4.806640 CCAATGGCAAAATAGGAGTGTT 57.193 40.909 0.00 0.00 0.00 3.32
472 473 0.620556 TGGATTCTGTTGGAGGAGCC 59.379 55.000 0.00 0.00 37.10 4.70
473 474 2.172293 AGATGGATTCTGTTGGAGGAGC 59.828 50.000 0.00 0.00 31.79 4.70
474 475 4.502950 GCTAGATGGATTCTGTTGGAGGAG 60.503 50.000 0.00 0.00 35.79 3.69
475 476 3.389329 GCTAGATGGATTCTGTTGGAGGA 59.611 47.826 0.00 0.00 35.79 3.71
476 477 3.390639 AGCTAGATGGATTCTGTTGGAGG 59.609 47.826 0.00 0.00 35.79 4.30
477 478 4.502950 GGAGCTAGATGGATTCTGTTGGAG 60.503 50.000 0.00 0.00 35.79 3.86
478 479 3.389329 GGAGCTAGATGGATTCTGTTGGA 59.611 47.826 0.00 0.00 35.79 3.53
479 480 3.737850 GGAGCTAGATGGATTCTGTTGG 58.262 50.000 0.00 0.00 35.79 3.77
480 481 3.388308 CGGAGCTAGATGGATTCTGTTG 58.612 50.000 0.00 0.00 35.79 3.33
481 482 3.742433 CGGAGCTAGATGGATTCTGTT 57.258 47.619 0.00 0.00 35.79 3.16
497 498 1.757118 TCCTTCTCTACATTGGCGGAG 59.243 52.381 0.00 0.00 0.00 4.63
498 499 1.860641 TCCTTCTCTACATTGGCGGA 58.139 50.000 0.00 0.00 0.00 5.54
499 500 2.918712 ATCCTTCTCTACATTGGCGG 57.081 50.000 0.00 0.00 0.00 6.13
500 501 4.752101 CCTAAATCCTTCTCTACATTGGCG 59.248 45.833 0.00 0.00 0.00 5.69
501 502 5.930135 TCCTAAATCCTTCTCTACATTGGC 58.070 41.667 0.00 0.00 0.00 4.52
502 503 7.446625 CCATTCCTAAATCCTTCTCTACATTGG 59.553 40.741 0.00 0.00 0.00 3.16
503 504 8.213679 TCCATTCCTAAATCCTTCTCTACATTG 58.786 37.037 0.00 0.00 0.00 2.82
504 505 8.337118 TCCATTCCTAAATCCTTCTCTACATT 57.663 34.615 0.00 0.00 0.00 2.71
505 506 7.474079 GCTCCATTCCTAAATCCTTCTCTACAT 60.474 40.741 0.00 0.00 0.00 2.29
506 507 6.183361 GCTCCATTCCTAAATCCTTCTCTACA 60.183 42.308 0.00 0.00 0.00 2.74
507 508 6.227522 GCTCCATTCCTAAATCCTTCTCTAC 58.772 44.000 0.00 0.00 0.00 2.59
508 509 5.308237 GGCTCCATTCCTAAATCCTTCTCTA 59.692 44.000 0.00 0.00 0.00 2.43
509 510 4.103943 GGCTCCATTCCTAAATCCTTCTCT 59.896 45.833 0.00 0.00 0.00 3.10
510 511 4.141390 TGGCTCCATTCCTAAATCCTTCTC 60.141 45.833 0.00 0.00 0.00 2.87
511 512 3.788142 TGGCTCCATTCCTAAATCCTTCT 59.212 43.478 0.00 0.00 0.00 2.85
512 513 4.170468 TGGCTCCATTCCTAAATCCTTC 57.830 45.455 0.00 0.00 0.00 3.46
513 514 4.078980 ACATGGCTCCATTCCTAAATCCTT 60.079 41.667 0.00 0.00 33.90 3.36
514 515 3.464833 ACATGGCTCCATTCCTAAATCCT 59.535 43.478 0.00 0.00 33.90 3.24
515 516 3.571401 CACATGGCTCCATTCCTAAATCC 59.429 47.826 0.00 0.00 33.90 3.01
516 517 3.571401 CCACATGGCTCCATTCCTAAATC 59.429 47.826 0.00 0.00 33.90 2.17
517 518 3.569491 CCACATGGCTCCATTCCTAAAT 58.431 45.455 0.00 0.00 33.90 1.40
518 519 2.358090 CCCACATGGCTCCATTCCTAAA 60.358 50.000 0.00 0.00 33.90 1.85
519 520 1.215173 CCCACATGGCTCCATTCCTAA 59.785 52.381 0.00 0.00 33.90 2.69
520 521 0.846015 CCCACATGGCTCCATTCCTA 59.154 55.000 0.00 0.00 33.90 2.94
521 522 0.920763 TCCCACATGGCTCCATTCCT 60.921 55.000 0.00 0.00 33.90 3.36
522 523 0.033208 TTCCCACATGGCTCCATTCC 60.033 55.000 0.00 0.00 33.90 3.01
523 524 1.959282 GATTCCCACATGGCTCCATTC 59.041 52.381 0.00 0.00 33.90 2.67
524 525 1.288633 TGATTCCCACATGGCTCCATT 59.711 47.619 0.00 0.00 33.90 3.16
525 526 0.928505 TGATTCCCACATGGCTCCAT 59.071 50.000 0.00 0.00 37.08 3.41
526 527 0.256752 CTGATTCCCACATGGCTCCA 59.743 55.000 0.00 0.00 0.00 3.86
527 528 0.548031 TCTGATTCCCACATGGCTCC 59.452 55.000 0.00 0.00 0.00 4.70
528 529 2.425143 TTCTGATTCCCACATGGCTC 57.575 50.000 0.00 0.00 0.00 4.70
529 530 2.905415 TTTCTGATTCCCACATGGCT 57.095 45.000 0.00 0.00 0.00 4.75
530 531 2.101917 CCATTTCTGATTCCCACATGGC 59.898 50.000 0.00 0.00 0.00 4.40
531 532 2.101917 GCCATTTCTGATTCCCACATGG 59.898 50.000 0.00 0.00 0.00 3.66
532 533 2.761767 TGCCATTTCTGATTCCCACATG 59.238 45.455 0.00 0.00 0.00 3.21
533 534 3.104519 TGCCATTTCTGATTCCCACAT 57.895 42.857 0.00 0.00 0.00 3.21
534 535 2.562298 GTTGCCATTTCTGATTCCCACA 59.438 45.455 0.00 0.00 0.00 4.17
535 536 2.562298 TGTTGCCATTTCTGATTCCCAC 59.438 45.455 0.00 0.00 0.00 4.61
536 537 2.886913 TGTTGCCATTTCTGATTCCCA 58.113 42.857 0.00 0.00 0.00 4.37
537 538 5.596836 TTATGTTGCCATTTCTGATTCCC 57.403 39.130 0.00 0.00 32.29 3.97
538 539 5.464389 GCATTATGTTGCCATTTCTGATTCC 59.536 40.000 0.00 0.00 36.60 3.01
539 540 6.520792 GCATTATGTTGCCATTTCTGATTC 57.479 37.500 0.00 0.00 36.60 2.52
551 552 0.934496 TACTCGCGGCATTATGTTGC 59.066 50.000 6.13 0.00 42.01 4.17
552 553 1.526887 CCTACTCGCGGCATTATGTTG 59.473 52.381 6.13 0.00 0.00 3.33
553 554 1.138266 ACCTACTCGCGGCATTATGTT 59.862 47.619 6.13 0.00 0.00 2.71
554 555 0.750850 ACCTACTCGCGGCATTATGT 59.249 50.000 6.13 0.00 0.00 2.29
555 556 2.717580 TACCTACTCGCGGCATTATG 57.282 50.000 6.13 0.00 0.00 1.90
556 557 3.585862 CATTACCTACTCGCGGCATTAT 58.414 45.455 6.13 0.00 0.00 1.28
557 558 2.864882 GCATTACCTACTCGCGGCATTA 60.865 50.000 6.13 0.00 0.00 1.90
558 559 1.865865 CATTACCTACTCGCGGCATT 58.134 50.000 6.13 0.00 0.00 3.56
559 560 0.600255 GCATTACCTACTCGCGGCAT 60.600 55.000 6.13 0.00 0.00 4.40
560 561 1.227147 GCATTACCTACTCGCGGCA 60.227 57.895 6.13 0.00 0.00 5.69
561 562 0.600255 ATGCATTACCTACTCGCGGC 60.600 55.000 6.13 0.00 0.00 6.53
562 563 2.287970 TGTATGCATTACCTACTCGCGG 60.288 50.000 3.54 0.00 0.00 6.46
563 564 3.007979 TGTATGCATTACCTACTCGCG 57.992 47.619 3.54 0.00 0.00 5.87
564 565 5.522460 TCTTTTGTATGCATTACCTACTCGC 59.478 40.000 3.54 0.00 0.00 5.03
565 566 7.534085 TTCTTTTGTATGCATTACCTACTCG 57.466 36.000 3.54 0.00 0.00 4.18
566 567 7.910683 GCTTTCTTTTGTATGCATTACCTACTC 59.089 37.037 3.54 0.00 0.00 2.59
567 568 7.393234 TGCTTTCTTTTGTATGCATTACCTACT 59.607 33.333 3.54 0.00 0.00 2.57
568 569 7.535139 TGCTTTCTTTTGTATGCATTACCTAC 58.465 34.615 3.54 0.00 0.00 3.18
569 570 7.695480 TGCTTTCTTTTGTATGCATTACCTA 57.305 32.000 3.54 0.00 0.00 3.08
570 571 6.588719 TGCTTTCTTTTGTATGCATTACCT 57.411 33.333 3.54 0.00 0.00 3.08
571 572 7.650834 TTTGCTTTCTTTTGTATGCATTACC 57.349 32.000 3.54 0.00 32.00 2.85
572 573 8.764287 ACTTTTGCTTTCTTTTGTATGCATTAC 58.236 29.630 3.54 1.81 32.00 1.89
573 574 8.885494 ACTTTTGCTTTCTTTTGTATGCATTA 57.115 26.923 3.54 0.00 32.00 1.90
574 575 7.790823 ACTTTTGCTTTCTTTTGTATGCATT 57.209 28.000 3.54 0.00 32.00 3.56
575 576 7.280652 ACAACTTTTGCTTTCTTTTGTATGCAT 59.719 29.630 3.79 3.79 32.00 3.96
576 577 6.593382 ACAACTTTTGCTTTCTTTTGTATGCA 59.407 30.769 0.00 0.00 0.00 3.96
577 578 7.003939 ACAACTTTTGCTTTCTTTTGTATGC 57.996 32.000 0.00 0.00 0.00 3.14
578 579 8.323140 CAGACAACTTTTGCTTTCTTTTGTATG 58.677 33.333 0.00 0.00 30.95 2.39
579 580 8.034804 ACAGACAACTTTTGCTTTCTTTTGTAT 58.965 29.630 0.00 0.00 0.00 2.29
580 581 7.328249 CACAGACAACTTTTGCTTTCTTTTGTA 59.672 33.333 0.00 0.00 0.00 2.41
581 582 6.146021 CACAGACAACTTTTGCTTTCTTTTGT 59.854 34.615 0.00 0.00 0.00 2.83
582 583 6.365789 TCACAGACAACTTTTGCTTTCTTTTG 59.634 34.615 0.00 0.00 0.00 2.44
583 584 6.454795 TCACAGACAACTTTTGCTTTCTTTT 58.545 32.000 0.00 0.00 0.00 2.27
584 585 6.024552 TCACAGACAACTTTTGCTTTCTTT 57.975 33.333 0.00 0.00 0.00 2.52
585 586 5.643379 TCACAGACAACTTTTGCTTTCTT 57.357 34.783 0.00 0.00 0.00 2.52
586 587 5.643379 TTCACAGACAACTTTTGCTTTCT 57.357 34.783 0.00 0.00 0.00 2.52
587 588 5.863935 AGTTTCACAGACAACTTTTGCTTTC 59.136 36.000 0.00 0.00 28.27 2.62
592 593 7.083858 TCTTTCAGTTTCACAGACAACTTTTG 58.916 34.615 0.00 0.00 30.48 2.44
597 598 7.484035 AGTATCTTTCAGTTTCACAGACAAC 57.516 36.000 0.00 0.00 0.00 3.32
622 623 6.789262 TGCTTTCTTTCAGAGTTTCTTTCAG 58.211 36.000 0.00 0.00 0.00 3.02
623 624 6.757897 TGCTTTCTTTCAGAGTTTCTTTCA 57.242 33.333 0.00 0.00 0.00 2.69
624 625 6.640092 CCATGCTTTCTTTCAGAGTTTCTTTC 59.360 38.462 0.00 0.00 0.00 2.62
625 626 6.097412 ACCATGCTTTCTTTCAGAGTTTCTTT 59.903 34.615 0.00 0.00 0.00 2.52
626 627 5.595952 ACCATGCTTTCTTTCAGAGTTTCTT 59.404 36.000 0.00 0.00 0.00 2.52
627 628 5.009410 CACCATGCTTTCTTTCAGAGTTTCT 59.991 40.000 0.00 0.00 0.00 2.52
628 629 5.218139 CACCATGCTTTCTTTCAGAGTTTC 58.782 41.667 0.00 0.00 0.00 2.78
629 630 4.646492 ACACCATGCTTTCTTTCAGAGTTT 59.354 37.500 0.00 0.00 0.00 2.66
630 631 4.210331 ACACCATGCTTTCTTTCAGAGTT 58.790 39.130 0.00 0.00 0.00 3.01
634 635 4.572985 TCAACACCATGCTTTCTTTCAG 57.427 40.909 0.00 0.00 0.00 3.02
671 672 2.425312 TCTGAAAAGCTCGTGGCAAAAA 59.575 40.909 0.00 0.00 44.79 1.94
676 677 1.129437 GACATCTGAAAAGCTCGTGGC 59.871 52.381 0.00 0.00 42.19 5.01
706 711 2.253603 GAGCTAGCGTGCAAATTTTGG 58.746 47.619 9.55 0.00 34.99 3.28
707 712 2.932498 TGAGCTAGCGTGCAAATTTTG 58.068 42.857 9.55 4.72 34.99 2.44
724 729 2.835580 ATCCAAGATGCTCGGATGAG 57.164 50.000 0.00 0.00 45.49 2.90
731 736 5.196695 AGTAGGGAAAAATCCAAGATGCTC 58.803 41.667 0.00 0.00 0.00 4.26
792 805 9.485206 GTGGTGAACAGTAGATAAAAACTTCTA 57.515 33.333 0.00 0.00 0.00 2.10
805 818 0.389948 GCCTCGGTGGTGAACAGTAG 60.390 60.000 0.00 0.00 38.35 2.57
813 826 0.036010 AAAGATGAGCCTCGGTGGTG 60.036 55.000 0.00 0.00 38.35 4.17
814 827 0.036010 CAAAGATGAGCCTCGGTGGT 60.036 55.000 0.00 0.00 38.35 4.16
815 828 0.745845 CCAAAGATGAGCCTCGGTGG 60.746 60.000 0.00 0.00 39.35 4.61
831 844 7.172868 ACTTGTGCATGATTCAATAATCCAA 57.827 32.000 0.00 0.00 40.78 3.53
846 862 0.611896 GGGCTGGGTAACTTGTGCAT 60.612 55.000 0.00 0.00 0.00 3.96
847 863 1.228429 GGGCTGGGTAACTTGTGCA 60.228 57.895 0.00 0.00 0.00 4.57
851 867 2.290641 TGTACATGGGCTGGGTAACTTG 60.291 50.000 0.00 0.00 0.00 3.16
868 884 5.392272 CCGTTAACTAAAGGCCCAAATGTAC 60.392 44.000 0.00 0.00 0.00 2.90
875 891 0.322726 GCCCGTTAACTAAAGGCCCA 60.323 55.000 0.00 0.00 34.13 5.36
878 894 1.938577 GCTAGCCCGTTAACTAAAGGC 59.061 52.381 2.29 14.48 34.13 4.35
880 896 2.608090 GCAGCTAGCCCGTTAACTAAAG 59.392 50.000 12.13 0.00 37.23 1.85
881 897 2.624636 GCAGCTAGCCCGTTAACTAAA 58.375 47.619 12.13 0.00 37.23 1.85
882 898 2.304751 GCAGCTAGCCCGTTAACTAA 57.695 50.000 12.13 0.00 37.23 2.24
884 900 4.934989 GCAGCTAGCCCGTTAACT 57.065 55.556 12.13 0.00 37.23 2.24
893 909 2.292845 GGATCCATTTCAAGCAGCTAGC 59.707 50.000 6.62 6.62 46.19 3.42
894 910 2.547211 CGGATCCATTTCAAGCAGCTAG 59.453 50.000 13.41 0.00 0.00 3.42
895 911 2.564771 CGGATCCATTTCAAGCAGCTA 58.435 47.619 13.41 0.00 0.00 3.32
896 912 1.386533 CGGATCCATTTCAAGCAGCT 58.613 50.000 13.41 0.00 0.00 4.24
897 913 0.248784 GCGGATCCATTTCAAGCAGC 60.249 55.000 13.41 0.00 0.00 5.25
898 914 1.097232 TGCGGATCCATTTCAAGCAG 58.903 50.000 13.41 0.00 0.00 4.24
899 915 1.766494 ATGCGGATCCATTTCAAGCA 58.234 45.000 13.41 11.54 36.01 3.91
900 916 2.735823 GAATGCGGATCCATTTCAAGC 58.264 47.619 13.41 5.54 35.67 4.01
901 917 2.855953 GCGAATGCGGATCCATTTCAAG 60.856 50.000 13.41 0.00 35.67 3.02
902 918 1.065401 GCGAATGCGGATCCATTTCAA 59.935 47.619 13.41 0.00 35.67 2.69
903 919 0.662619 GCGAATGCGGATCCATTTCA 59.337 50.000 13.41 4.03 35.67 2.69
904 920 3.461843 GCGAATGCGGATCCATTTC 57.538 52.632 13.41 10.01 35.67 2.17
961 984 0.904865 TTCTCGCTGGATCTGGTGGT 60.905 55.000 0.00 0.00 0.00 4.16
1314 1352 3.036959 GAGGAGGGGAGGAGGGGA 61.037 72.222 0.00 0.00 0.00 4.81
1947 1991 4.051237 GCAAACCTTTGTTGAAGATGTCC 58.949 43.478 0.00 0.00 40.24 4.02
1971 2015 0.394899 AGGCAAGCACTAGAATGGGC 60.395 55.000 0.00 0.00 36.44 5.36
1973 2017 2.706339 AGAGGCAAGCACTAGAATGG 57.294 50.000 0.00 0.00 0.00 3.16
1975 2019 4.026356 ACAAAGAGGCAAGCACTAGAAT 57.974 40.909 0.00 0.00 0.00 2.40
1976 2020 3.492102 ACAAAGAGGCAAGCACTAGAA 57.508 42.857 0.00 0.00 0.00 2.10
1977 2021 3.578716 ACTACAAAGAGGCAAGCACTAGA 59.421 43.478 0.00 0.00 0.00 2.43
1978 2022 3.931578 ACTACAAAGAGGCAAGCACTAG 58.068 45.455 0.00 0.00 0.00 2.57
1991 2035 8.604035 ACAACAAATCGCAGATATACTACAAAG 58.396 33.333 0.00 0.00 45.12 2.77
2030 2074 6.554334 TGAGCAAAAACTAACGAAGCTATT 57.446 33.333 0.00 0.00 0.00 1.73
2032 2079 5.994887 TTGAGCAAAAACTAACGAAGCTA 57.005 34.783 0.00 0.00 0.00 3.32
2108 2155 2.820197 TCATCGATCCCTATGAACCTCG 59.180 50.000 0.00 0.00 0.00 4.63
2126 2175 2.093341 GCAATGTTGAGGGGCAATTCAT 60.093 45.455 0.00 0.00 39.03 2.57
2134 2183 2.579873 CTATCCTGCAATGTTGAGGGG 58.420 52.381 0.00 0.00 0.00 4.79
2228 4096 2.159198 GGTTAGCCAATGTCAATGCCAG 60.159 50.000 0.00 0.00 34.09 4.85
2243 4142 3.189287 CAGCCGGATATGATTTGGTTAGC 59.811 47.826 5.05 0.00 0.00 3.09
2926 4863 0.619543 TTACCTGCAGGACTACCCCC 60.620 60.000 39.19 0.00 38.94 5.40
3137 5080 7.783090 AATGTCAAGATGCTAGTAGTTGATG 57.217 36.000 10.36 0.00 30.27 3.07
3252 5201 4.354587 GCAAAACCTACTATGAGCATTGC 58.645 43.478 0.00 0.00 34.62 3.56
3341 5292 5.125417 ACAGACCATAAACATTACCACATGC 59.875 40.000 0.00 0.00 0.00 4.06
3347 5476 4.335594 GCCTGACAGACCATAAACATTACC 59.664 45.833 3.32 0.00 0.00 2.85
3353 5482 4.757149 GGATATGCCTGACAGACCATAAAC 59.243 45.833 15.28 12.83 0.00 2.01
3369 5498 9.491675 CTCATTATCTCATTATCAGGGATATGC 57.508 37.037 0.00 0.00 0.00 3.14
3511 5640 7.552458 TTAACCTATGTATGCATTGTGACTG 57.448 36.000 3.54 0.00 36.58 3.51
3587 5716 3.748083 TGAAATTGTCTTGAGAGCAGCT 58.252 40.909 0.00 0.00 0.00 4.24
3658 5805 2.519013 AGCAAGGAGGAAACAACATCC 58.481 47.619 0.00 0.00 40.48 3.51
3659 5806 4.762251 ACTAAGCAAGGAGGAAACAACATC 59.238 41.667 0.00 0.00 0.00 3.06
3660 5807 4.520492 CACTAAGCAAGGAGGAAACAACAT 59.480 41.667 0.00 0.00 0.00 2.71
3661 5808 3.882888 CACTAAGCAAGGAGGAAACAACA 59.117 43.478 0.00 0.00 0.00 3.33
3662 5809 3.883489 ACACTAAGCAAGGAGGAAACAAC 59.117 43.478 0.00 0.00 0.00 3.32
3663 5810 3.882888 CACACTAAGCAAGGAGGAAACAA 59.117 43.478 0.00 0.00 0.00 2.83
3664 5811 3.135712 TCACACTAAGCAAGGAGGAAACA 59.864 43.478 0.00 0.00 0.00 2.83
3665 5812 3.740115 TCACACTAAGCAAGGAGGAAAC 58.260 45.455 0.00 0.00 0.00 2.78
3666 5813 4.640771 ATCACACTAAGCAAGGAGGAAA 57.359 40.909 0.00 0.00 0.00 3.13
3667 5814 5.674525 CATATCACACTAAGCAAGGAGGAA 58.325 41.667 0.00 0.00 0.00 3.36
3668 5815 4.443457 GCATATCACACTAAGCAAGGAGGA 60.443 45.833 0.00 0.00 0.00 3.71
3669 5816 3.812053 GCATATCACACTAAGCAAGGAGG 59.188 47.826 0.00 0.00 0.00 4.30
3670 5817 4.510711 CAGCATATCACACTAAGCAAGGAG 59.489 45.833 0.00 0.00 0.00 3.69
3671 5818 4.445453 CAGCATATCACACTAAGCAAGGA 58.555 43.478 0.00 0.00 0.00 3.36
3672 5819 4.808077 CAGCATATCACACTAAGCAAGG 57.192 45.455 0.00 0.00 0.00 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.