Multiple sequence alignment - TraesCS4D01G015600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G015600 chr4D 100.000 2708 0 0 1 2708 6980775 6983482 0.000000e+00 5001.0
1 TraesCS4D01G015600 chr4D 86.280 656 87 2 1055 1710 7035404 7036056 0.000000e+00 710.0
2 TraesCS4D01G015600 chr4D 86.726 113 13 2 2192 2302 388120380 388120268 1.020000e-24 124.0
3 TraesCS4D01G015600 chr4D 84.259 108 14 3 2195 2302 495047007 495046903 4.770000e-18 102.0
4 TraesCS4D01G015600 chr4D 100.000 36 0 0 401 436 449386804 449386839 1.740000e-07 67.6
5 TraesCS4D01G015600 chr4A 92.080 1755 97 22 448 2191 596538594 596536871 0.000000e+00 2433.0
6 TraesCS4D01G015600 chr4A 87.500 616 68 7 1096 1708 596523251 596523860 0.000000e+00 702.0
7 TraesCS4D01G015600 chr4A 81.736 553 50 18 2175 2708 596529860 596529340 5.390000e-112 414.0
8 TraesCS4D01G015600 chr4A 78.682 258 32 14 2195 2430 69316158 69315902 1.680000e-32 150.0
9 TraesCS4D01G015600 chr4A 100.000 35 0 0 400 434 709972628 709972662 6.260000e-07 65.8
10 TraesCS4D01G015600 chr4A 86.441 59 6 2 398 456 175851017 175851073 2.250000e-06 63.9
11 TraesCS4D01G015600 chr4A 90.000 50 3 2 401 448 578378905 578378856 2.250000e-06 63.9
12 TraesCS4D01G015600 chr4B 86.417 508 65 4 1206 1711 12492686 12492181 1.100000e-153 553.0
13 TraesCS4D01G015600 chr4B 100.000 43 0 0 355 397 181507850 181507808 2.240000e-11 80.5
14 TraesCS4D01G015600 chr6D 93.973 365 15 6 1 362 89397401 89397761 1.830000e-151 545.0
15 TraesCS4D01G015600 chr6D 93.188 367 17 8 1 362 110082147 110081784 1.430000e-147 532.0
16 TraesCS4D01G015600 chr6D 92.663 368 19 7 1 362 398413448 398413813 8.590000e-145 523.0
17 TraesCS4D01G015600 chr3D 93.169 366 19 5 1 362 479578142 479577779 1.430000e-147 532.0
18 TraesCS4D01G015600 chr3D 94.051 353 18 2 1 352 612239016 612238666 1.430000e-147 532.0
19 TraesCS4D01G015600 chr3D 93.132 364 21 3 1 362 346617853 346618214 5.130000e-147 531.0
20 TraesCS4D01G015600 chr3D 92.896 366 21 5 1 362 420125047 420125411 6.640000e-146 527.0
21 TraesCS4D01G015600 chr3D 92.727 55 3 1 1732 1785 523299215 523299269 8.040000e-11 78.7
22 TraesCS4D01G015600 chr3D 95.833 48 2 0 353 400 524664199 524664152 8.040000e-11 78.7
23 TraesCS4D01G015600 chr3D 90.909 55 3 2 353 407 606396969 606396917 3.740000e-09 73.1
24 TraesCS4D01G015600 chr7D 93.151 365 20 5 1 362 220675304 220675666 5.130000e-147 531.0
25 TraesCS4D01G015600 chr2D 93.151 365 20 4 1 362 515169511 515169873 5.130000e-147 531.0
26 TraesCS4D01G015600 chr2D 91.525 59 4 1 1723 1780 161397376 161397434 2.240000e-11 80.5
27 TraesCS4D01G015600 chr2D 81.319 91 15 2 2308 2396 108388558 108388648 3.740000e-09 73.1
28 TraesCS4D01G015600 chr3B 80.695 259 27 15 2194 2430 453676715 453676972 2.140000e-41 180.0
29 TraesCS4D01G015600 chr3B 100.000 46 0 0 1732 1777 107640637 107640592 4.800000e-13 86.1
30 TraesCS4D01G015600 chr3B 100.000 46 0 0 1732 1777 670028671 670028626 4.800000e-13 86.1
31 TraesCS4D01G015600 chr3B 97.872 47 1 0 353 399 449444182 449444228 6.210000e-12 82.4
32 TraesCS4D01G015600 chr5B 80.315 254 28 14 2198 2430 92370396 92370648 3.580000e-39 172.0
33 TraesCS4D01G015600 chr5B 80.315 254 28 14 2198 2430 317708746 317708494 3.580000e-39 172.0
34 TraesCS4D01G015600 chr5B 79.528 254 30 14 2198 2430 307227983 307227731 7.760000e-36 161.0
35 TraesCS4D01G015600 chr5B 97.872 47 1 0 353 399 477805850 477805804 6.210000e-12 82.4
36 TraesCS4D01G015600 chr5B 80.769 78 13 2 2320 2396 239250817 239250741 2.910000e-05 60.2
37 TraesCS4D01G015600 chr5B 94.737 38 1 1 401 438 255404509 255404473 1.050000e-04 58.4
38 TraesCS4D01G015600 chr2B 79.835 243 27 14 2199 2420 353587320 353587561 1.000000e-34 158.0
39 TraesCS4D01G015600 chr2B 91.071 56 4 1 1723 1777 495146617 495146562 1.040000e-09 75.0
40 TraesCS4D01G015600 chr2B 92.857 42 2 1 397 438 458290193 458290153 2.910000e-05 60.2
41 TraesCS4D01G015600 chr5A 85.185 108 15 1 2198 2304 674656807 674656700 2.850000e-20 110.0
42 TraesCS4D01G015600 chr5A 97.872 47 1 0 353 399 502884125 502884079 6.210000e-12 82.4
43 TraesCS4D01G015600 chr5A 90.476 63 2 4 1732 1791 685986599 685986660 2.240000e-11 80.5
44 TraesCS4D01G015600 chr1B 94.828 58 2 1 1732 1788 552952397 552952454 3.710000e-14 89.8
45 TraesCS4D01G015600 chr1D 100.000 44 0 0 353 396 60382826 60382783 6.210000e-12 82.4
46 TraesCS4D01G015600 chr2A 97.826 46 1 0 1732 1777 611312252 611312297 2.240000e-11 80.5
47 TraesCS4D01G015600 chr2A 88.000 50 4 1 399 448 723059684 723059731 1.050000e-04 58.4
48 TraesCS4D01G015600 chr3A 90.000 60 3 3 353 410 561264 561322 1.040000e-09 75.0
49 TraesCS4D01G015600 chr3A 90.000 60 3 3 353 410 926611 926669 1.040000e-09 75.0
50 TraesCS4D01G015600 chr3A 100.000 35 0 0 401 435 713978105 713978071 6.260000e-07 65.8
51 TraesCS4D01G015600 chr3A 100.000 28 0 0 1683 1710 423688996 423688969 5.000000e-03 52.8
52 TraesCS4D01G015600 chr1A 81.319 91 15 2 2308 2396 243246245 243246155 3.740000e-09 73.1
53 TraesCS4D01G015600 chr7B 89.362 47 4 1 401 446 32088117 32088071 1.050000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G015600 chr4D 6980775 6983482 2707 False 5001 5001 100.000 1 2708 1 chr4D.!!$F1 2707
1 TraesCS4D01G015600 chr4D 7035404 7036056 652 False 710 710 86.280 1055 1710 1 chr4D.!!$F2 655
2 TraesCS4D01G015600 chr4A 596536871 596538594 1723 True 2433 2433 92.080 448 2191 1 chr4A.!!$R4 1743
3 TraesCS4D01G015600 chr4A 596523251 596523860 609 False 702 702 87.500 1096 1708 1 chr4A.!!$F2 612
4 TraesCS4D01G015600 chr4A 596529340 596529860 520 True 414 414 81.736 2175 2708 1 chr4A.!!$R3 533
5 TraesCS4D01G015600 chr4B 12492181 12492686 505 True 553 553 86.417 1206 1711 1 chr4B.!!$R1 505

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
855 856 0.031178 CACAGTGGCTTGCCAAACTC 59.969 55.0 16.55 3.91 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2570 2601 1.369568 CAGTGTGTGTGCATGTGCG 60.37 57.895 0.0 0.0 45.83 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.743636 TTTGATCCTCCACGACAGTC 57.256 50.000 0.00 0.00 0.00 3.51
21 22 1.924731 TTGATCCTCCACGACAGTCT 58.075 50.000 0.00 0.00 0.00 3.24
22 23 1.177401 TGATCCTCCACGACAGTCTG 58.823 55.000 0.00 0.00 0.00 3.51
23 24 1.271926 TGATCCTCCACGACAGTCTGA 60.272 52.381 6.91 0.00 0.00 3.27
24 25 2.028130 GATCCTCCACGACAGTCTGAT 58.972 52.381 6.91 0.00 0.00 2.90
25 26 1.924731 TCCTCCACGACAGTCTGATT 58.075 50.000 6.91 0.00 0.00 2.57
26 27 3.081710 TCCTCCACGACAGTCTGATTA 57.918 47.619 6.91 0.00 0.00 1.75
27 28 2.753452 TCCTCCACGACAGTCTGATTAC 59.247 50.000 6.91 0.00 0.00 1.89
28 29 2.159226 CCTCCACGACAGTCTGATTACC 60.159 54.545 6.91 0.00 0.00 2.85
29 30 2.492088 CTCCACGACAGTCTGATTACCA 59.508 50.000 6.91 0.00 0.00 3.25
30 31 2.492088 TCCACGACAGTCTGATTACCAG 59.508 50.000 6.91 0.00 44.27 4.00
31 32 2.231478 CCACGACAGTCTGATTACCAGT 59.769 50.000 6.91 0.00 43.38 4.00
32 33 3.245797 CACGACAGTCTGATTACCAGTG 58.754 50.000 6.91 2.46 43.38 3.66
33 34 3.057526 CACGACAGTCTGATTACCAGTGA 60.058 47.826 6.91 0.00 43.38 3.41
34 35 3.191581 ACGACAGTCTGATTACCAGTGAG 59.808 47.826 6.91 0.00 43.38 3.51
35 36 3.440522 CGACAGTCTGATTACCAGTGAGA 59.559 47.826 6.91 0.00 43.38 3.27
36 37 4.097135 CGACAGTCTGATTACCAGTGAGAT 59.903 45.833 6.91 0.00 43.38 2.75
37 38 5.587289 GACAGTCTGATTACCAGTGAGATC 58.413 45.833 6.91 0.00 43.38 2.75
38 39 4.404073 ACAGTCTGATTACCAGTGAGATCC 59.596 45.833 6.91 0.00 43.38 3.36
39 40 3.634448 AGTCTGATTACCAGTGAGATCCG 59.366 47.826 0.00 0.00 43.38 4.18
40 41 2.959030 TCTGATTACCAGTGAGATCCGG 59.041 50.000 0.00 0.00 43.38 5.14
41 42 2.959030 CTGATTACCAGTGAGATCCGGA 59.041 50.000 6.61 6.61 38.10 5.14
42 43 2.959030 TGATTACCAGTGAGATCCGGAG 59.041 50.000 11.34 0.00 0.00 4.63
43 44 2.820728 TTACCAGTGAGATCCGGAGA 57.179 50.000 11.34 0.00 0.00 3.71
44 45 3.314307 TTACCAGTGAGATCCGGAGAT 57.686 47.619 11.34 0.00 34.57 2.75
45 46 1.407936 ACCAGTGAGATCCGGAGATG 58.592 55.000 11.34 1.87 30.90 2.90
46 47 1.063642 ACCAGTGAGATCCGGAGATGA 60.064 52.381 11.34 0.00 30.90 2.92
47 48 2.246469 CCAGTGAGATCCGGAGATGAT 58.754 52.381 11.34 0.00 30.90 2.45
48 49 2.632028 CCAGTGAGATCCGGAGATGATT 59.368 50.000 11.34 0.00 30.90 2.57
49 50 3.554544 CCAGTGAGATCCGGAGATGATTG 60.555 52.174 11.34 1.91 30.90 2.67
50 51 2.036992 AGTGAGATCCGGAGATGATTGC 59.963 50.000 11.34 0.00 30.90 3.56
51 52 1.345741 TGAGATCCGGAGATGATTGCC 59.654 52.381 11.34 0.00 30.90 4.52
52 53 1.345741 GAGATCCGGAGATGATTGCCA 59.654 52.381 11.34 0.00 30.90 4.92
53 54 1.770658 AGATCCGGAGATGATTGCCAA 59.229 47.619 11.34 0.00 30.90 4.52
54 55 1.876156 GATCCGGAGATGATTGCCAAC 59.124 52.381 11.34 0.00 30.90 3.77
55 56 0.107214 TCCGGAGATGATTGCCAACC 60.107 55.000 0.00 0.00 0.00 3.77
56 57 0.394216 CCGGAGATGATTGCCAACCA 60.394 55.000 0.00 0.00 0.00 3.67
57 58 1.462616 CGGAGATGATTGCCAACCAA 58.537 50.000 0.00 0.00 37.94 3.67
58 59 2.026641 CGGAGATGATTGCCAACCAAT 58.973 47.619 0.00 0.00 46.57 3.16
59 60 2.223641 CGGAGATGATTGCCAACCAATG 60.224 50.000 0.00 0.00 44.02 2.82
68 69 2.577490 CCAACCAATGGCAATCCGA 58.423 52.632 0.00 0.00 43.80 4.55
69 70 0.457035 CCAACCAATGGCAATCCGAG 59.543 55.000 0.00 0.00 43.80 4.63
70 71 0.457035 CAACCAATGGCAATCCGAGG 59.543 55.000 0.00 0.00 34.14 4.63
71 72 1.322538 AACCAATGGCAATCCGAGGC 61.323 55.000 0.00 0.00 34.14 4.70
72 73 1.454479 CCAATGGCAATCCGAGGCT 60.454 57.895 0.00 0.00 34.14 4.58
73 74 1.039233 CCAATGGCAATCCGAGGCTT 61.039 55.000 0.00 0.00 34.14 4.35
74 75 0.383231 CAATGGCAATCCGAGGCTTC 59.617 55.000 0.00 0.00 34.14 3.86
75 76 0.034186 AATGGCAATCCGAGGCTTCA 60.034 50.000 0.00 0.00 34.14 3.02
76 77 0.184451 ATGGCAATCCGAGGCTTCAT 59.816 50.000 0.00 0.00 34.14 2.57
77 78 0.464373 TGGCAATCCGAGGCTTCATC 60.464 55.000 0.00 0.00 34.14 2.92
78 79 0.179034 GGCAATCCGAGGCTTCATCT 60.179 55.000 0.00 0.00 0.00 2.90
79 80 1.224965 GCAATCCGAGGCTTCATCTC 58.775 55.000 0.00 0.00 0.00 2.75
80 81 1.473965 GCAATCCGAGGCTTCATCTCA 60.474 52.381 0.00 0.00 0.00 3.27
81 82 2.481854 CAATCCGAGGCTTCATCTCAG 58.518 52.381 0.00 0.00 0.00 3.35
82 83 1.786937 ATCCGAGGCTTCATCTCAGT 58.213 50.000 0.00 0.00 0.00 3.41
83 84 2.437085 TCCGAGGCTTCATCTCAGTA 57.563 50.000 0.00 0.00 0.00 2.74
84 85 2.025155 TCCGAGGCTTCATCTCAGTAC 58.975 52.381 0.00 0.00 0.00 2.73
85 86 1.268794 CCGAGGCTTCATCTCAGTACG 60.269 57.143 0.00 0.00 0.00 3.67
86 87 1.671328 CGAGGCTTCATCTCAGTACGA 59.329 52.381 0.00 0.00 0.00 3.43
87 88 2.539953 CGAGGCTTCATCTCAGTACGAC 60.540 54.545 0.00 0.00 0.00 4.34
88 89 1.751924 AGGCTTCATCTCAGTACGACC 59.248 52.381 0.00 0.00 0.00 4.79
89 90 1.202428 GGCTTCATCTCAGTACGACCC 60.202 57.143 0.00 0.00 0.00 4.46
90 91 1.202428 GCTTCATCTCAGTACGACCCC 60.202 57.143 0.00 0.00 0.00 4.95
91 92 2.100197 CTTCATCTCAGTACGACCCCA 58.900 52.381 0.00 0.00 0.00 4.96
92 93 1.763968 TCATCTCAGTACGACCCCAG 58.236 55.000 0.00 0.00 0.00 4.45
93 94 1.005569 TCATCTCAGTACGACCCCAGT 59.994 52.381 0.00 0.00 0.00 4.00
94 95 1.825474 CATCTCAGTACGACCCCAGTT 59.175 52.381 0.00 0.00 0.00 3.16
95 96 2.885135 TCTCAGTACGACCCCAGTTA 57.115 50.000 0.00 0.00 0.00 2.24
96 97 3.377253 TCTCAGTACGACCCCAGTTAT 57.623 47.619 0.00 0.00 0.00 1.89
97 98 4.508551 TCTCAGTACGACCCCAGTTATA 57.491 45.455 0.00 0.00 0.00 0.98
98 99 4.858850 TCTCAGTACGACCCCAGTTATAA 58.141 43.478 0.00 0.00 0.00 0.98
99 100 4.641989 TCTCAGTACGACCCCAGTTATAAC 59.358 45.833 7.57 7.57 0.00 1.89
100 101 4.603131 TCAGTACGACCCCAGTTATAACT 58.397 43.478 12.50 12.50 40.60 2.24
101 102 5.754782 TCAGTACGACCCCAGTTATAACTA 58.245 41.667 17.62 0.00 37.08 2.24
102 103 5.590259 TCAGTACGACCCCAGTTATAACTAC 59.410 44.000 17.62 9.79 37.08 2.73
103 104 4.576463 AGTACGACCCCAGTTATAACTACG 59.424 45.833 17.62 17.72 37.08 3.51
104 105 2.689983 ACGACCCCAGTTATAACTACGG 59.310 50.000 17.62 19.58 37.08 4.02
105 106 2.951642 CGACCCCAGTTATAACTACGGA 59.048 50.000 26.00 0.00 37.08 4.69
106 107 3.571401 CGACCCCAGTTATAACTACGGAT 59.429 47.826 26.00 14.58 37.08 4.18
107 108 4.761739 CGACCCCAGTTATAACTACGGATA 59.238 45.833 26.00 0.00 37.08 2.59
108 109 5.416952 CGACCCCAGTTATAACTACGGATAT 59.583 44.000 26.00 14.73 37.08 1.63
109 110 6.404074 CGACCCCAGTTATAACTACGGATATC 60.404 46.154 26.00 18.97 37.08 1.63
110 111 5.718607 ACCCCAGTTATAACTACGGATATCC 59.281 44.000 26.00 12.14 37.08 2.59
120 121 2.348998 GGATATCCGCCAGGCCAG 59.651 66.667 5.01 0.00 37.47 4.85
121 122 2.359230 GATATCCGCCAGGCCAGC 60.359 66.667 5.01 6.62 37.47 4.85
122 123 3.909086 GATATCCGCCAGGCCAGCC 62.909 68.421 5.01 0.00 37.47 4.85
135 136 1.510844 CCAGCCGTGGCAATAAACC 59.489 57.895 14.29 0.00 44.88 3.27
136 137 1.247419 CCAGCCGTGGCAATAAACCA 61.247 55.000 14.29 0.00 44.88 3.67
137 138 0.600557 CAGCCGTGGCAATAAACCAA 59.399 50.000 14.29 0.00 44.88 3.67
138 139 0.601057 AGCCGTGGCAATAAACCAAC 59.399 50.000 14.29 0.00 44.88 3.77
139 140 0.601057 GCCGTGGCAATAAACCAACT 59.399 50.000 5.89 0.00 39.39 3.16
140 141 1.000394 GCCGTGGCAATAAACCAACTT 60.000 47.619 5.89 0.00 39.39 2.66
141 142 2.229302 GCCGTGGCAATAAACCAACTTA 59.771 45.455 5.89 0.00 39.39 2.24
142 143 3.672241 GCCGTGGCAATAAACCAACTTAG 60.672 47.826 5.89 0.00 39.39 2.18
143 144 3.119637 CCGTGGCAATAAACCAACTTAGG 60.120 47.826 0.00 0.00 39.39 2.69
144 145 3.672241 CGTGGCAATAAACCAACTTAGGC 60.672 47.826 0.00 0.00 39.39 3.93
145 146 2.829120 TGGCAATAAACCAACTTAGGCC 59.171 45.455 0.00 0.00 36.46 5.19
146 147 2.829120 GGCAATAAACCAACTTAGGCCA 59.171 45.455 5.01 0.00 36.18 5.36
147 148 3.259625 GGCAATAAACCAACTTAGGCCAA 59.740 43.478 5.01 0.00 36.18 4.52
148 149 4.262678 GGCAATAAACCAACTTAGGCCAAA 60.263 41.667 5.01 0.00 36.18 3.28
149 150 5.301555 GCAATAAACCAACTTAGGCCAAAA 58.698 37.500 5.01 0.00 0.00 2.44
150 151 5.408299 GCAATAAACCAACTTAGGCCAAAAG 59.592 40.000 5.01 11.13 0.00 2.27
151 152 3.469008 AAACCAACTTAGGCCAAAAGC 57.531 42.857 15.72 0.00 42.60 3.51
167 168 3.416351 GCCTAAGCTTGGGGGAGT 58.584 61.111 28.06 0.00 35.50 3.85
168 169 2.616489 GCCTAAGCTTGGGGGAGTA 58.384 57.895 28.06 0.00 35.50 2.59
169 170 0.180642 GCCTAAGCTTGGGGGAGTAC 59.819 60.000 28.06 8.42 35.50 2.73
170 171 0.464452 CCTAAGCTTGGGGGAGTACG 59.536 60.000 20.71 0.00 0.00 3.67
171 172 1.192428 CTAAGCTTGGGGGAGTACGT 58.808 55.000 9.86 0.00 0.00 3.57
172 173 2.381911 CTAAGCTTGGGGGAGTACGTA 58.618 52.381 9.86 0.00 0.00 3.57
173 174 1.875488 AAGCTTGGGGGAGTACGTAT 58.125 50.000 0.00 0.00 0.00 3.06
174 175 1.120530 AGCTTGGGGGAGTACGTATG 58.879 55.000 0.00 0.00 0.00 2.39
175 176 0.828677 GCTTGGGGGAGTACGTATGT 59.171 55.000 0.00 0.00 0.00 2.29
176 177 1.202498 GCTTGGGGGAGTACGTATGTC 60.202 57.143 0.00 0.00 0.00 3.06
177 178 1.411612 CTTGGGGGAGTACGTATGTCC 59.588 57.143 15.43 15.43 0.00 4.02
182 183 0.383231 GGAGTACGTATGTCCCACCG 59.617 60.000 13.55 0.00 0.00 4.94
183 184 1.382522 GAGTACGTATGTCCCACCGA 58.617 55.000 0.00 0.00 0.00 4.69
184 185 1.064654 GAGTACGTATGTCCCACCGAC 59.935 57.143 0.00 0.00 42.33 4.79
193 194 3.426787 TGTCCCACCGACATTACATTT 57.573 42.857 0.00 0.00 46.80 2.32
194 195 4.554960 TGTCCCACCGACATTACATTTA 57.445 40.909 0.00 0.00 46.80 1.40
195 196 4.255301 TGTCCCACCGACATTACATTTAC 58.745 43.478 0.00 0.00 46.80 2.01
196 197 3.307782 GTCCCACCGACATTACATTTACG 59.692 47.826 0.00 0.00 41.54 3.18
197 198 3.055963 TCCCACCGACATTACATTTACGT 60.056 43.478 0.00 0.00 0.00 3.57
198 199 3.685756 CCCACCGACATTACATTTACGTT 59.314 43.478 0.00 0.00 0.00 3.99
199 200 4.201744 CCCACCGACATTACATTTACGTTC 60.202 45.833 0.00 0.00 0.00 3.95
200 201 4.389382 CCACCGACATTACATTTACGTTCA 59.611 41.667 0.00 0.00 0.00 3.18
201 202 5.310489 CACCGACATTACATTTACGTTCAC 58.690 41.667 0.00 0.00 0.00 3.18
202 203 4.989797 ACCGACATTACATTTACGTTCACA 59.010 37.500 0.00 0.00 0.00 3.58
203 204 5.107375 ACCGACATTACATTTACGTTCACAC 60.107 40.000 0.00 0.00 0.00 3.82
204 205 5.107414 CCGACATTACATTTACGTTCACACA 60.107 40.000 0.00 0.00 0.00 3.72
205 206 5.781717 CGACATTACATTTACGTTCACACAC 59.218 40.000 0.00 0.00 0.00 3.82
206 207 6.346279 CGACATTACATTTACGTTCACACACT 60.346 38.462 0.00 0.00 0.00 3.55
207 208 6.884187 ACATTACATTTACGTTCACACACTC 58.116 36.000 0.00 0.00 0.00 3.51
208 209 6.480651 ACATTACATTTACGTTCACACACTCA 59.519 34.615 0.00 0.00 0.00 3.41
209 210 7.172532 ACATTACATTTACGTTCACACACTCAT 59.827 33.333 0.00 0.00 0.00 2.90
210 211 7.485418 TTACATTTACGTTCACACACTCATT 57.515 32.000 0.00 0.00 0.00 2.57
211 212 5.747565 ACATTTACGTTCACACACTCATTG 58.252 37.500 0.00 0.00 0.00 2.82
212 213 3.870723 TTACGTTCACACACTCATTGC 57.129 42.857 0.00 0.00 0.00 3.56
213 214 1.953559 ACGTTCACACACTCATTGCT 58.046 45.000 0.00 0.00 0.00 3.91
214 215 3.106242 ACGTTCACACACTCATTGCTA 57.894 42.857 0.00 0.00 0.00 3.49
215 216 3.059884 ACGTTCACACACTCATTGCTAG 58.940 45.455 0.00 0.00 0.00 3.42
216 217 3.243737 ACGTTCACACACTCATTGCTAGA 60.244 43.478 0.00 0.00 0.00 2.43
217 218 3.928992 CGTTCACACACTCATTGCTAGAT 59.071 43.478 0.00 0.00 0.00 1.98
218 219 4.201656 CGTTCACACACTCATTGCTAGATG 60.202 45.833 0.00 0.00 0.00 2.90
219 220 4.541973 TCACACACTCATTGCTAGATGT 57.458 40.909 0.00 0.00 0.00 3.06
220 221 4.498241 TCACACACTCATTGCTAGATGTC 58.502 43.478 0.00 0.00 0.00 3.06
221 222 3.305361 CACACACTCATTGCTAGATGTCG 59.695 47.826 0.00 0.00 0.00 4.35
222 223 2.862536 CACACTCATTGCTAGATGTCGG 59.137 50.000 0.00 0.00 0.00 4.79
223 224 2.497675 ACACTCATTGCTAGATGTCGGT 59.502 45.455 0.00 0.00 0.00 4.69
224 225 2.862536 CACTCATTGCTAGATGTCGGTG 59.137 50.000 0.00 0.00 0.00 4.94
225 226 1.863454 CTCATTGCTAGATGTCGGTGC 59.137 52.381 0.00 0.00 0.00 5.01
226 227 1.482182 TCATTGCTAGATGTCGGTGCT 59.518 47.619 0.00 0.00 0.00 4.40
227 228 1.863454 CATTGCTAGATGTCGGTGCTC 59.137 52.381 0.00 0.00 0.00 4.26
228 229 0.894835 TTGCTAGATGTCGGTGCTCA 59.105 50.000 0.00 0.00 0.00 4.26
229 230 1.114627 TGCTAGATGTCGGTGCTCAT 58.885 50.000 0.00 0.00 0.00 2.90
230 231 2.306847 TGCTAGATGTCGGTGCTCATA 58.693 47.619 0.00 0.00 0.00 2.15
231 232 2.034685 TGCTAGATGTCGGTGCTCATAC 59.965 50.000 0.00 0.00 0.00 2.39
232 233 2.294791 GCTAGATGTCGGTGCTCATACT 59.705 50.000 0.00 0.00 0.00 2.12
233 234 3.243569 GCTAGATGTCGGTGCTCATACTT 60.244 47.826 0.00 0.00 0.00 2.24
234 235 3.895232 AGATGTCGGTGCTCATACTTT 57.105 42.857 0.00 0.00 0.00 2.66
235 236 4.207891 AGATGTCGGTGCTCATACTTTT 57.792 40.909 0.00 0.00 0.00 2.27
236 237 4.579869 AGATGTCGGTGCTCATACTTTTT 58.420 39.130 0.00 0.00 0.00 1.94
237 238 4.631813 AGATGTCGGTGCTCATACTTTTTC 59.368 41.667 0.00 0.00 0.00 2.29
238 239 2.734606 TGTCGGTGCTCATACTTTTTCG 59.265 45.455 0.00 0.00 0.00 3.46
239 240 1.730064 TCGGTGCTCATACTTTTTCGC 59.270 47.619 0.00 0.00 0.00 4.70
240 241 1.732259 CGGTGCTCATACTTTTTCGCT 59.268 47.619 0.00 0.00 0.00 4.93
241 242 2.474526 CGGTGCTCATACTTTTTCGCTG 60.475 50.000 0.00 0.00 0.00 5.18
242 243 2.484264 GGTGCTCATACTTTTTCGCTGT 59.516 45.455 0.00 0.00 0.00 4.40
243 244 3.682858 GGTGCTCATACTTTTTCGCTGTA 59.317 43.478 0.00 0.00 0.00 2.74
244 245 4.153475 GGTGCTCATACTTTTTCGCTGTAA 59.847 41.667 0.00 0.00 0.00 2.41
245 246 5.163754 GGTGCTCATACTTTTTCGCTGTAAT 60.164 40.000 0.00 0.00 0.00 1.89
246 247 6.036735 GGTGCTCATACTTTTTCGCTGTAATA 59.963 38.462 0.00 0.00 0.00 0.98
247 248 7.254795 GGTGCTCATACTTTTTCGCTGTAATAT 60.255 37.037 0.00 0.00 0.00 1.28
248 249 7.794349 GTGCTCATACTTTTTCGCTGTAATATC 59.206 37.037 0.00 0.00 0.00 1.63
249 250 7.494298 TGCTCATACTTTTTCGCTGTAATATCA 59.506 33.333 0.00 0.00 0.00 2.15
250 251 8.499162 GCTCATACTTTTTCGCTGTAATATCAT 58.501 33.333 0.00 0.00 0.00 2.45
251 252 9.803130 CTCATACTTTTTCGCTGTAATATCATG 57.197 33.333 0.00 0.00 0.00 3.07
252 253 8.282592 TCATACTTTTTCGCTGTAATATCATGC 58.717 33.333 0.00 0.00 0.00 4.06
253 254 6.683974 ACTTTTTCGCTGTAATATCATGCT 57.316 33.333 0.00 0.00 0.00 3.79
254 255 7.786178 ACTTTTTCGCTGTAATATCATGCTA 57.214 32.000 0.00 0.00 0.00 3.49
255 256 7.855545 ACTTTTTCGCTGTAATATCATGCTAG 58.144 34.615 0.00 0.00 0.00 3.42
256 257 7.495934 ACTTTTTCGCTGTAATATCATGCTAGT 59.504 33.333 0.00 0.00 0.00 2.57
257 258 7.786178 TTTTCGCTGTAATATCATGCTAGTT 57.214 32.000 0.00 0.00 0.00 2.24
258 259 7.786178 TTTCGCTGTAATATCATGCTAGTTT 57.214 32.000 0.00 0.00 0.00 2.66
259 260 8.880878 TTTCGCTGTAATATCATGCTAGTTTA 57.119 30.769 0.00 0.00 0.00 2.01
260 261 9.489084 TTTCGCTGTAATATCATGCTAGTTTAT 57.511 29.630 0.00 0.00 0.00 1.40
261 262 9.489084 TTCGCTGTAATATCATGCTAGTTTATT 57.511 29.630 0.00 0.00 0.00 1.40
262 263 9.489084 TCGCTGTAATATCATGCTAGTTTATTT 57.511 29.630 0.00 0.00 0.00 1.40
263 264 9.746711 CGCTGTAATATCATGCTAGTTTATTTC 57.253 33.333 0.00 0.00 0.00 2.17
291 292 8.770438 TTTTTATGCTTTCTTCTTGTGTGTTT 57.230 26.923 0.00 0.00 0.00 2.83
292 293 7.754069 TTTATGCTTTCTTCTTGTGTGTTTG 57.246 32.000 0.00 0.00 0.00 2.93
293 294 5.581126 ATGCTTTCTTCTTGTGTGTTTGA 57.419 34.783 0.00 0.00 0.00 2.69
294 295 5.384063 TGCTTTCTTCTTGTGTGTTTGAA 57.616 34.783 0.00 0.00 0.00 2.69
295 296 5.777802 TGCTTTCTTCTTGTGTGTTTGAAA 58.222 33.333 0.00 0.00 0.00 2.69
296 297 6.219473 TGCTTTCTTCTTGTGTGTTTGAAAA 58.781 32.000 0.00 0.00 0.00 2.29
297 298 6.703607 TGCTTTCTTCTTGTGTGTTTGAAAAA 59.296 30.769 0.00 0.00 0.00 1.94
298 299 7.009440 GCTTTCTTCTTGTGTGTTTGAAAAAC 58.991 34.615 0.00 0.00 0.00 2.43
299 300 7.414814 TTTCTTCTTGTGTGTTTGAAAAACC 57.585 32.000 0.00 0.00 0.00 3.27
300 301 6.339587 TCTTCTTGTGTGTTTGAAAAACCT 57.660 33.333 0.00 0.00 0.00 3.50
301 302 6.754193 TCTTCTTGTGTGTTTGAAAAACCTT 58.246 32.000 0.00 0.00 0.00 3.50
302 303 7.887381 TCTTCTTGTGTGTTTGAAAAACCTTA 58.113 30.769 0.00 0.00 0.00 2.69
303 304 8.361139 TCTTCTTGTGTGTTTGAAAAACCTTAA 58.639 29.630 0.00 0.00 0.00 1.85
304 305 8.527567 TTCTTGTGTGTTTGAAAAACCTTAAG 57.472 30.769 0.00 0.00 0.00 1.85
305 306 7.887381 TCTTGTGTGTTTGAAAAACCTTAAGA 58.113 30.769 3.36 1.27 0.00 2.10
306 307 8.361139 TCTTGTGTGTTTGAAAAACCTTAAGAA 58.639 29.630 3.36 0.00 0.00 2.52
307 308 8.888579 TTGTGTGTTTGAAAAACCTTAAGAAA 57.111 26.923 3.36 0.00 0.00 2.52
308 309 8.888579 TGTGTGTTTGAAAAACCTTAAGAAAA 57.111 26.923 3.36 0.00 0.00 2.29
309 310 8.766151 TGTGTGTTTGAAAAACCTTAAGAAAAC 58.234 29.630 3.36 4.17 0.00 2.43
310 311 8.225107 GTGTGTTTGAAAAACCTTAAGAAAACC 58.775 33.333 3.36 0.00 0.00 3.27
311 312 7.931948 TGTGTTTGAAAAACCTTAAGAAAACCA 59.068 29.630 3.36 0.00 0.00 3.67
312 313 8.775527 GTGTTTGAAAAACCTTAAGAAAACCAA 58.224 29.630 3.36 0.00 0.00 3.67
313 314 9.338622 TGTTTGAAAAACCTTAAGAAAACCAAA 57.661 25.926 3.36 4.75 0.00 3.28
361 362 9.299465 AGCTAGTTTACTTTCTTACTGAGTAGT 57.701 33.333 0.00 0.00 40.99 2.73
362 363 9.344309 GCTAGTTTACTTTCTTACTGAGTAGTG 57.656 37.037 0.00 0.00 37.78 2.74
363 364 9.843334 CTAGTTTACTTTCTTACTGAGTAGTGG 57.157 37.037 0.00 0.00 37.78 4.00
364 365 7.668492 AGTTTACTTTCTTACTGAGTAGTGGG 58.332 38.462 0.00 0.00 37.78 4.61
365 366 7.508296 AGTTTACTTTCTTACTGAGTAGTGGGA 59.492 37.037 0.00 0.00 37.78 4.37
366 367 5.725325 ACTTTCTTACTGAGTAGTGGGAC 57.275 43.478 0.00 0.00 37.78 4.46
367 368 5.145564 ACTTTCTTACTGAGTAGTGGGACA 58.854 41.667 0.00 0.00 37.78 4.02
396 397 9.747898 ACTAGTGACATAAATGATAAAAACCCA 57.252 29.630 0.00 0.00 0.00 4.51
412 413 9.816354 ATAAAAACCCAAAAATGAATAGATCGG 57.184 29.630 0.00 0.00 0.00 4.18
413 414 7.475137 AAAACCCAAAAATGAATAGATCGGA 57.525 32.000 0.00 0.00 0.00 4.55
414 415 7.475137 AAACCCAAAAATGAATAGATCGGAA 57.525 32.000 0.00 0.00 0.00 4.30
415 416 6.699575 ACCCAAAAATGAATAGATCGGAAG 57.300 37.500 0.00 0.00 0.00 3.46
416 417 6.187682 ACCCAAAAATGAATAGATCGGAAGT 58.812 36.000 0.00 0.00 0.00 3.01
417 418 6.663523 ACCCAAAAATGAATAGATCGGAAGTT 59.336 34.615 0.00 0.00 0.00 2.66
418 419 7.178451 ACCCAAAAATGAATAGATCGGAAGTTT 59.822 33.333 0.00 0.00 0.00 2.66
419 420 8.034804 CCCAAAAATGAATAGATCGGAAGTTTT 58.965 33.333 0.00 0.00 0.00 2.43
420 421 9.076596 CCAAAAATGAATAGATCGGAAGTTTTC 57.923 33.333 0.00 0.00 0.00 2.29
421 422 9.846248 CAAAAATGAATAGATCGGAAGTTTTCT 57.154 29.630 0.00 0.00 0.00 2.52
423 424 7.470289 AATGAATAGATCGGAAGTTTTCTCG 57.530 36.000 0.00 0.00 0.00 4.04
424 425 4.804139 TGAATAGATCGGAAGTTTTCTCGC 59.196 41.667 0.00 0.00 0.00 5.03
425 426 2.743636 AGATCGGAAGTTTTCTCGCA 57.256 45.000 0.00 0.00 0.00 5.10
426 427 3.040147 AGATCGGAAGTTTTCTCGCAA 57.960 42.857 0.00 0.00 0.00 4.85
427 428 3.399330 AGATCGGAAGTTTTCTCGCAAA 58.601 40.909 0.00 0.00 0.00 3.68
428 429 3.813166 AGATCGGAAGTTTTCTCGCAAAA 59.187 39.130 0.00 0.00 0.00 2.44
429 430 4.274950 AGATCGGAAGTTTTCTCGCAAAAA 59.725 37.500 0.00 0.00 0.00 1.94
488 489 1.876156 GGCGGGAAATGAAGCTATCAG 59.124 52.381 0.00 0.00 42.53 2.90
518 519 3.424962 GCAGACTGATGGACTTTTAACGC 60.425 47.826 6.65 0.00 0.00 4.84
522 523 2.678336 CTGATGGACTTTTAACGCCCTC 59.322 50.000 0.00 0.00 0.00 4.30
534 535 2.094659 CGCCCTCTACACGCTGTTG 61.095 63.158 0.00 0.00 0.00 3.33
536 537 0.320421 GCCCTCTACACGCTGTTGAA 60.320 55.000 0.00 0.00 32.23 2.69
538 539 1.000955 CCCTCTACACGCTGTTGAAGT 59.999 52.381 0.00 0.00 32.23 3.01
539 540 2.230508 CCCTCTACACGCTGTTGAAGTA 59.769 50.000 0.00 0.00 32.23 2.24
540 541 3.305813 CCCTCTACACGCTGTTGAAGTAA 60.306 47.826 0.00 0.00 32.23 2.24
541 542 4.495422 CCTCTACACGCTGTTGAAGTAAT 58.505 43.478 0.00 0.00 32.23 1.89
542 543 4.327357 CCTCTACACGCTGTTGAAGTAATG 59.673 45.833 0.00 0.00 32.23 1.90
543 544 4.242475 TCTACACGCTGTTGAAGTAATGG 58.758 43.478 0.00 0.00 29.73 3.16
544 545 2.846193 ACACGCTGTTGAAGTAATGGT 58.154 42.857 0.00 0.00 0.00 3.55
545 546 3.997762 ACACGCTGTTGAAGTAATGGTA 58.002 40.909 0.00 0.00 0.00 3.25
546 547 3.744426 ACACGCTGTTGAAGTAATGGTAC 59.256 43.478 0.00 0.00 0.00 3.34
553 554 8.082852 CGCTGTTGAAGTAATGGTACTAGATAT 58.917 37.037 0.00 0.00 39.79 1.63
583 584 3.627577 GTCAAGTCATCGGGTGCAATTAT 59.372 43.478 0.00 0.00 0.00 1.28
587 588 4.016444 AGTCATCGGGTGCAATTATGTTT 58.984 39.130 0.00 0.00 0.00 2.83
588 589 4.104776 GTCATCGGGTGCAATTATGTTTG 58.895 43.478 0.00 0.00 0.00 2.93
589 590 3.761218 TCATCGGGTGCAATTATGTTTGT 59.239 39.130 0.00 0.00 0.00 2.83
640 641 6.421202 GCGGATTCGTCAATATTTCTAGAACT 59.579 38.462 4.18 2.19 38.89 3.01
641 642 7.358517 GCGGATTCGTCAATATTTCTAGAACTC 60.359 40.741 4.18 0.00 38.89 3.01
642 643 7.863375 CGGATTCGTCAATATTTCTAGAACTCT 59.137 37.037 4.18 0.00 0.00 3.24
643 644 9.535878 GGATTCGTCAATATTTCTAGAACTCTT 57.464 33.333 4.18 0.00 0.00 2.85
705 706 0.878416 TTCTTTTTCCCGGACGCATG 59.122 50.000 0.73 0.00 0.00 4.06
710 711 0.174845 TTTCCCGGACGCATGTAGAG 59.825 55.000 0.73 0.00 0.00 2.43
721 722 6.318628 GGACGCATGTAGAGAATATACAGAG 58.681 44.000 0.00 0.00 36.63 3.35
722 723 6.149640 GGACGCATGTAGAGAATATACAGAGA 59.850 42.308 0.00 0.00 36.63 3.10
745 746 4.282703 AGAATCAAACTTGAGGCAAATGCT 59.717 37.500 5.25 0.00 41.08 3.79
811 812 2.399396 ACACGTCCAAAATTTCGCAG 57.601 45.000 0.00 0.00 0.00 5.18
819 820 2.097466 CCAAAATTTCGCAGCGGAGTAT 59.903 45.455 16.42 0.00 0.00 2.12
822 823 5.505654 CCAAAATTTCGCAGCGGAGTATTAT 60.506 40.000 16.42 0.00 0.00 1.28
826 827 5.839262 TTTCGCAGCGGAGTATTATTATG 57.161 39.130 16.42 0.00 0.00 1.90
827 828 4.514781 TCGCAGCGGAGTATTATTATGT 57.485 40.909 16.42 0.00 0.00 2.29
828 829 5.632244 TCGCAGCGGAGTATTATTATGTA 57.368 39.130 16.42 0.00 0.00 2.29
829 830 5.396484 TCGCAGCGGAGTATTATTATGTAC 58.604 41.667 16.42 0.00 0.00 2.90
855 856 0.031178 CACAGTGGCTTGCCAAACTC 59.969 55.000 16.55 3.91 0.00 3.01
883 884 5.556915 AGTAACGTGGAAGATTCATGGAAA 58.443 37.500 0.00 0.00 0.00 3.13
884 885 5.643777 AGTAACGTGGAAGATTCATGGAAAG 59.356 40.000 0.00 0.00 0.00 2.62
961 962 2.112279 TACCCACCTCAGACCAAACT 57.888 50.000 0.00 0.00 0.00 2.66
977 978 3.428870 CCAAACTTCTACTAGCACACACG 59.571 47.826 0.00 0.00 0.00 4.49
1040 1041 3.043713 CCGTGTCGTGCTGCACAT 61.044 61.111 29.86 0.00 35.51 3.21
1359 1361 3.287222 GCTGAATAAGTACATGGGCCAA 58.713 45.455 11.89 0.00 0.00 4.52
1366 1368 1.985159 AGTACATGGGCCAAGACTTCA 59.015 47.619 16.88 0.00 0.00 3.02
1377 1379 3.430098 GCCAAGACTTCATCGACATCTCT 60.430 47.826 0.00 0.00 0.00 3.10
1378 1380 4.111198 CCAAGACTTCATCGACATCTCTG 58.889 47.826 0.00 0.00 0.00 3.35
1392 1394 0.888619 TCTCTGTCATCGACGGCTTT 59.111 50.000 0.00 0.00 38.67 3.51
1410 1412 2.279935 TTAACGTGCCCATGGACTTT 57.720 45.000 15.22 6.93 0.00 2.66
1732 1734 4.219070 CACGACCAACCTTATATATCCGGA 59.781 45.833 6.61 6.61 0.00 5.14
1733 1735 4.219288 ACGACCAACCTTATATATCCGGAC 59.781 45.833 6.12 0.00 0.00 4.79
1734 1736 4.461781 CGACCAACCTTATATATCCGGACT 59.538 45.833 6.12 0.00 0.00 3.85
1735 1737 5.621555 CGACCAACCTTATATATCCGGACTG 60.622 48.000 6.12 0.00 0.00 3.51
1736 1738 5.399991 ACCAACCTTATATATCCGGACTGA 58.600 41.667 6.12 0.00 0.00 3.41
1737 1739 5.480772 ACCAACCTTATATATCCGGACTGAG 59.519 44.000 6.12 0.00 0.00 3.35
1738 1740 5.715279 CCAACCTTATATATCCGGACTGAGA 59.285 44.000 6.12 0.00 0.00 3.27
1739 1741 6.350277 CCAACCTTATATATCCGGACTGAGAC 60.350 46.154 6.12 0.00 0.00 3.36
1740 1742 6.142259 ACCTTATATATCCGGACTGAGACT 57.858 41.667 6.12 0.00 0.00 3.24
1741 1743 6.553857 ACCTTATATATCCGGACTGAGACTT 58.446 40.000 6.12 0.00 0.00 3.01
1742 1744 6.434652 ACCTTATATATCCGGACTGAGACTTG 59.565 42.308 6.12 0.00 0.00 3.16
1743 1745 6.127591 CCTTATATATCCGGACTGAGACTTGG 60.128 46.154 6.12 0.00 0.00 3.61
1748 1750 2.561419 TCCGGACTGAGACTTGGTTAAG 59.439 50.000 0.00 0.00 39.86 1.85
1777 1779 3.450817 TCGACTGAGATTTAGCAATCCCA 59.549 43.478 0.00 0.00 39.95 4.37
1781 1783 6.091849 CGACTGAGATTTAGCAATCCCATATG 59.908 42.308 0.00 0.00 39.95 1.78
1850 1852 2.218759 GGCGATACGACATGTGAACATC 59.781 50.000 1.15 0.00 33.63 3.06
1853 1855 3.418944 CGATACGACATGTGAACATCGAG 59.581 47.826 17.35 1.53 36.75 4.04
1876 1879 1.207811 TGACATCACATGCACGATCCT 59.792 47.619 0.00 0.00 0.00 3.24
1888 1891 3.308595 TGCACGATCCTATTGTAAAAGCG 59.691 43.478 0.00 0.00 0.00 4.68
1952 1955 5.178252 AGCGAGACACACATGATAATAATGC 59.822 40.000 0.00 0.00 0.00 3.56
2101 2113 9.421399 TGTATGATATTTCCTCTCTAAGTGACA 57.579 33.333 0.00 0.00 0.00 3.58
2102 2114 9.906660 GTATGATATTTCCTCTCTAAGTGACAG 57.093 37.037 0.00 0.00 0.00 3.51
2128 2140 8.186163 GGTTTTCTAGTTAATTTCATTACCCCG 58.814 37.037 0.00 0.00 0.00 5.73
2191 2203 8.602472 ATCTCTCTAAATGAGGTGGGATATAC 57.398 38.462 0.00 0.00 42.86 1.47
2203 2215 6.644882 AGGTGGGATATACTTTATCTCCCTT 58.355 40.000 14.56 2.56 46.48 3.95
2204 2216 7.089566 AGGTGGGATATACTTTATCTCCCTTT 58.910 38.462 14.56 2.30 46.48 3.11
2205 2217 7.017651 AGGTGGGATATACTTTATCTCCCTTTG 59.982 40.741 14.56 0.00 46.48 2.77
2271 2284 7.888021 TCCATGTCTATGTTTGACCAAGTTTAT 59.112 33.333 0.00 0.00 33.83 1.40
2277 2290 9.290988 TCTATGTTTGACCAAGTTTATAGCAAA 57.709 29.630 0.00 0.00 0.00 3.68
2333 2364 8.969260 TCATGATGAAGCTAGTGTAATGATTT 57.031 30.769 0.00 0.00 0.00 2.17
2334 2365 8.833493 TCATGATGAAGCTAGTGTAATGATTTG 58.167 33.333 0.00 0.00 0.00 2.32
2340 2371 8.615211 TGAAGCTAGTGTAATGATTTGCTATTG 58.385 33.333 0.00 0.00 0.00 1.90
2341 2372 7.502120 AGCTAGTGTAATGATTTGCTATTGG 57.498 36.000 0.00 0.00 0.00 3.16
2428 2459 8.897872 ACAATACACCTTATATTTAGGAACGG 57.102 34.615 9.82 0.00 36.58 4.44
2429 2460 8.707449 ACAATACACCTTATATTTAGGAACGGA 58.293 33.333 9.82 0.00 36.58 4.69
2430 2461 9.550406 CAATACACCTTATATTTAGGAACGGAA 57.450 33.333 9.82 0.00 36.58 4.30
2445 2476 5.932883 AGGAACGGAATAAAAGAGAGTGAAC 59.067 40.000 0.00 0.00 0.00 3.18
2453 2484 6.952935 ATAAAAGAGAGTGAACGTAAGCAG 57.047 37.500 0.00 0.00 45.62 4.24
2496 2527 1.194781 ACCCCTGTGATTGACGCTCT 61.195 55.000 0.00 0.00 0.00 4.09
2498 2529 0.803768 CCCTGTGATTGACGCTCTCG 60.804 60.000 0.00 0.00 42.43 4.04
2557 2588 3.670377 GGCGGCAACAACCAGTCC 61.670 66.667 3.07 0.00 32.68 3.85
2570 2601 1.101049 CCAGTCCCCAACACACACAC 61.101 60.000 0.00 0.00 0.00 3.82
2571 2602 1.153249 AGTCCCCAACACACACACG 60.153 57.895 0.00 0.00 0.00 4.49
2572 2603 2.515057 TCCCCAACACACACACGC 60.515 61.111 0.00 0.00 0.00 5.34
2573 2604 2.826287 CCCCAACACACACACGCA 60.826 61.111 0.00 0.00 0.00 5.24
2576 2607 1.723608 CCCAACACACACACGCACAT 61.724 55.000 0.00 0.00 0.00 3.21
2577 2608 0.591994 CCAACACACACACGCACATG 60.592 55.000 0.00 0.00 0.00 3.21
2586 2617 1.655046 CACGCACATGCACACACAC 60.655 57.895 4.49 0.00 42.21 3.82
2588 2619 1.369568 CGCACATGCACACACACTG 60.370 57.895 4.49 0.00 42.21 3.66
2594 2625 2.026590 GCACACACACTGCAAGGC 59.973 61.111 0.00 0.00 39.30 4.35
2595 2626 2.328989 CACACACACTGCAAGGCG 59.671 61.111 0.00 0.00 39.30 5.52
2596 2627 3.585990 ACACACACTGCAAGGCGC 61.586 61.111 0.00 0.00 39.30 6.53
2597 2628 4.332637 CACACACTGCAAGGCGCC 62.333 66.667 21.89 21.89 41.33 6.53
2628 2659 2.367202 GGCCTCCGTGATTCCTGGA 61.367 63.158 0.00 0.00 0.00 3.86
2629 2660 1.700042 GGCCTCCGTGATTCCTGGAT 61.700 60.000 0.00 0.00 0.00 3.41
2630 2661 0.250081 GCCTCCGTGATTCCTGGATC 60.250 60.000 0.00 0.00 0.00 3.36
2631 2662 1.123077 CCTCCGTGATTCCTGGATCA 58.877 55.000 0.00 0.93 33.81 2.92
2654 2685 4.536489 AGGGTAAGGAGGAATATATGTGCC 59.464 45.833 0.00 0.00 0.00 5.01
2658 2689 4.543590 AGGAGGAATATATGTGCCTTCG 57.456 45.455 0.00 0.00 31.04 3.79
2702 2733 3.306364 GGTGAGAATCCGAGGTATGATGG 60.306 52.174 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.834549 AGACTGTCGTGGAGGATCAAAT 59.165 45.455 1.52 0.00 36.25 2.32
1 2 2.029020 CAGACTGTCGTGGAGGATCAAA 60.029 50.000 1.52 0.00 36.25 2.69
2 3 1.546029 CAGACTGTCGTGGAGGATCAA 59.454 52.381 1.52 0.00 36.25 2.57
3 4 1.177401 CAGACTGTCGTGGAGGATCA 58.823 55.000 1.52 0.00 36.25 2.92
4 5 1.464734 TCAGACTGTCGTGGAGGATC 58.535 55.000 1.59 0.00 0.00 3.36
5 6 2.151502 ATCAGACTGTCGTGGAGGAT 57.848 50.000 1.59 0.00 0.00 3.24
6 7 1.924731 AATCAGACTGTCGTGGAGGA 58.075 50.000 1.59 0.00 0.00 3.71
7 8 2.159226 GGTAATCAGACTGTCGTGGAGG 60.159 54.545 1.59 0.00 0.00 4.30
8 9 2.492088 TGGTAATCAGACTGTCGTGGAG 59.508 50.000 1.59 0.00 0.00 3.86
9 10 2.492088 CTGGTAATCAGACTGTCGTGGA 59.508 50.000 1.59 2.47 46.18 4.02
10 11 2.231478 ACTGGTAATCAGACTGTCGTGG 59.769 50.000 1.59 0.00 46.18 4.94
11 12 3.057526 TCACTGGTAATCAGACTGTCGTG 60.058 47.826 1.59 1.70 46.18 4.35
12 13 3.154710 TCACTGGTAATCAGACTGTCGT 58.845 45.455 1.59 0.00 46.18 4.34
13 14 3.440522 TCTCACTGGTAATCAGACTGTCG 59.559 47.826 1.59 0.00 46.18 4.35
14 15 5.451242 GGATCTCACTGGTAATCAGACTGTC 60.451 48.000 1.59 0.00 46.18 3.51
15 16 4.404073 GGATCTCACTGGTAATCAGACTGT 59.596 45.833 1.59 0.00 46.18 3.55
16 17 4.498850 CGGATCTCACTGGTAATCAGACTG 60.499 50.000 0.00 0.00 46.18 3.51
17 18 3.634448 CGGATCTCACTGGTAATCAGACT 59.366 47.826 0.00 0.00 46.18 3.24
18 19 3.243569 CCGGATCTCACTGGTAATCAGAC 60.244 52.174 0.00 0.00 46.18 3.51
19 20 2.959030 CCGGATCTCACTGGTAATCAGA 59.041 50.000 0.00 0.00 46.18 3.27
21 22 2.959030 CTCCGGATCTCACTGGTAATCA 59.041 50.000 3.57 0.00 37.55 2.57
22 23 3.223435 TCTCCGGATCTCACTGGTAATC 58.777 50.000 3.57 0.00 37.55 1.75
23 24 3.314307 TCTCCGGATCTCACTGGTAAT 57.686 47.619 3.57 0.00 37.55 1.89
24 25 2.820728 TCTCCGGATCTCACTGGTAA 57.179 50.000 3.57 0.00 37.55 2.85
25 26 2.174854 TCATCTCCGGATCTCACTGGTA 59.825 50.000 3.57 0.00 37.55 3.25
26 27 1.063642 TCATCTCCGGATCTCACTGGT 60.064 52.381 3.57 0.00 37.55 4.00
27 28 1.697284 TCATCTCCGGATCTCACTGG 58.303 55.000 3.57 0.00 37.63 4.00
28 29 3.651206 CAATCATCTCCGGATCTCACTG 58.349 50.000 3.57 0.00 0.00 3.66
29 30 2.036992 GCAATCATCTCCGGATCTCACT 59.963 50.000 3.57 0.00 0.00 3.41
30 31 2.411904 GCAATCATCTCCGGATCTCAC 58.588 52.381 3.57 0.00 0.00 3.51
31 32 1.345741 GGCAATCATCTCCGGATCTCA 59.654 52.381 3.57 0.00 0.00 3.27
32 33 1.345741 TGGCAATCATCTCCGGATCTC 59.654 52.381 3.57 0.00 0.00 2.75
33 34 1.427809 TGGCAATCATCTCCGGATCT 58.572 50.000 3.57 0.00 0.00 2.75
34 35 1.876156 GTTGGCAATCATCTCCGGATC 59.124 52.381 3.57 0.00 0.00 3.36
35 36 1.477558 GGTTGGCAATCATCTCCGGAT 60.478 52.381 3.57 0.00 0.00 4.18
36 37 0.107214 GGTTGGCAATCATCTCCGGA 60.107 55.000 2.93 2.93 0.00 5.14
37 38 0.394216 TGGTTGGCAATCATCTCCGG 60.394 55.000 9.58 0.00 0.00 5.14
38 39 1.462616 TTGGTTGGCAATCATCTCCG 58.537 50.000 14.94 0.00 0.00 4.63
39 40 2.101917 CCATTGGTTGGCAATCATCTCC 59.898 50.000 14.94 4.61 39.09 3.71
40 41 3.447918 CCATTGGTTGGCAATCATCTC 57.552 47.619 14.94 0.00 39.09 2.75
51 52 0.457035 CCTCGGATTGCCATTGGTTG 59.543 55.000 4.26 0.00 0.00 3.77
52 53 1.322538 GCCTCGGATTGCCATTGGTT 61.323 55.000 4.26 0.00 0.00 3.67
53 54 1.754234 GCCTCGGATTGCCATTGGT 60.754 57.895 4.26 0.00 0.00 3.67
54 55 1.039233 AAGCCTCGGATTGCCATTGG 61.039 55.000 0.00 0.00 0.00 3.16
55 56 0.383231 GAAGCCTCGGATTGCCATTG 59.617 55.000 0.00 0.00 0.00 2.82
56 57 0.034186 TGAAGCCTCGGATTGCCATT 60.034 50.000 0.00 0.00 0.00 3.16
57 58 0.184451 ATGAAGCCTCGGATTGCCAT 59.816 50.000 0.00 0.00 0.00 4.40
58 59 0.464373 GATGAAGCCTCGGATTGCCA 60.464 55.000 0.00 0.00 0.00 4.92
59 60 0.179034 AGATGAAGCCTCGGATTGCC 60.179 55.000 0.00 0.00 0.00 4.52
60 61 1.224965 GAGATGAAGCCTCGGATTGC 58.775 55.000 0.00 0.00 0.00 3.56
61 62 2.158986 ACTGAGATGAAGCCTCGGATTG 60.159 50.000 0.00 0.00 38.90 2.67
62 63 2.114616 ACTGAGATGAAGCCTCGGATT 58.885 47.619 0.00 0.00 38.90 3.01
63 64 1.786937 ACTGAGATGAAGCCTCGGAT 58.213 50.000 0.00 0.00 38.90 4.18
64 65 2.025155 GTACTGAGATGAAGCCTCGGA 58.975 52.381 0.00 0.00 38.90 4.55
65 66 1.268794 CGTACTGAGATGAAGCCTCGG 60.269 57.143 0.00 0.00 41.56 4.63
66 67 1.671328 TCGTACTGAGATGAAGCCTCG 59.329 52.381 0.00 0.00 33.51 4.63
67 68 2.223618 GGTCGTACTGAGATGAAGCCTC 60.224 54.545 0.00 0.00 0.00 4.70
68 69 1.751924 GGTCGTACTGAGATGAAGCCT 59.248 52.381 0.00 0.00 0.00 4.58
69 70 1.202428 GGGTCGTACTGAGATGAAGCC 60.202 57.143 0.00 0.00 0.00 4.35
70 71 1.202428 GGGGTCGTACTGAGATGAAGC 60.202 57.143 0.00 0.00 0.00 3.86
71 72 2.099921 CTGGGGTCGTACTGAGATGAAG 59.900 54.545 0.00 0.00 0.00 3.02
72 73 2.100197 CTGGGGTCGTACTGAGATGAA 58.900 52.381 0.00 0.00 0.00 2.57
73 74 1.005569 ACTGGGGTCGTACTGAGATGA 59.994 52.381 0.00 0.00 0.00 2.92
74 75 1.475403 ACTGGGGTCGTACTGAGATG 58.525 55.000 0.00 0.00 0.00 2.90
75 76 2.233305 AACTGGGGTCGTACTGAGAT 57.767 50.000 0.00 0.00 0.00 2.75
76 77 2.885135 TAACTGGGGTCGTACTGAGA 57.115 50.000 0.00 0.00 0.00 3.27
77 78 4.643784 AGTTATAACTGGGGTCGTACTGAG 59.356 45.833 17.35 0.00 37.98 3.35
78 79 4.603131 AGTTATAACTGGGGTCGTACTGA 58.397 43.478 17.35 0.00 37.98 3.41
79 80 4.996788 AGTTATAACTGGGGTCGTACTG 57.003 45.455 17.35 0.00 37.98 2.74
80 81 4.576463 CGTAGTTATAACTGGGGTCGTACT 59.424 45.833 25.27 0.00 40.07 2.73
81 82 4.261197 CCGTAGTTATAACTGGGGTCGTAC 60.261 50.000 25.27 13.05 40.07 3.67
82 83 3.882888 CCGTAGTTATAACTGGGGTCGTA 59.117 47.826 25.27 2.63 40.07 3.43
83 84 2.689983 CCGTAGTTATAACTGGGGTCGT 59.310 50.000 25.27 2.07 40.07 4.34
84 85 2.951642 TCCGTAGTTATAACTGGGGTCG 59.048 50.000 25.27 19.16 40.07 4.79
85 86 6.127507 GGATATCCGTAGTTATAACTGGGGTC 60.128 46.154 25.27 20.46 40.07 4.46
86 87 5.718607 GGATATCCGTAGTTATAACTGGGGT 59.281 44.000 25.27 22.58 40.07 4.95
87 88 6.218108 GGATATCCGTAGTTATAACTGGGG 57.782 45.833 25.27 23.30 40.07 4.96
103 104 2.348998 CTGGCCTGGCGGATATCC 59.651 66.667 13.40 12.14 0.00 2.59
104 105 2.359230 GCTGGCCTGGCGGATATC 60.359 66.667 13.40 0.00 0.00 1.63
105 106 3.958860 GGCTGGCCTGGCGGATAT 61.959 66.667 20.37 0.00 0.00 1.63
117 118 1.247419 TGGTTTATTGCCACGGCTGG 61.247 55.000 9.92 0.00 42.51 4.85
118 119 0.600557 TTGGTTTATTGCCACGGCTG 59.399 50.000 9.92 0.00 42.51 4.85
119 120 0.601057 GTTGGTTTATTGCCACGGCT 59.399 50.000 9.92 0.00 42.51 5.52
120 121 0.601057 AGTTGGTTTATTGCCACGGC 59.399 50.000 0.00 0.00 42.35 5.68
121 122 3.119637 CCTAAGTTGGTTTATTGCCACGG 60.120 47.826 0.00 0.00 35.46 4.94
122 123 3.672241 GCCTAAGTTGGTTTATTGCCACG 60.672 47.826 0.00 0.00 35.46 4.94
123 124 3.368013 GGCCTAAGTTGGTTTATTGCCAC 60.368 47.826 0.00 0.00 35.46 5.01
124 125 2.829120 GGCCTAAGTTGGTTTATTGCCA 59.171 45.455 0.00 0.00 33.71 4.92
125 126 2.829120 TGGCCTAAGTTGGTTTATTGCC 59.171 45.455 3.32 0.00 33.92 4.52
126 127 4.529109 TTGGCCTAAGTTGGTTTATTGC 57.471 40.909 3.32 0.00 0.00 3.56
127 128 5.408299 GCTTTTGGCCTAAGTTGGTTTATTG 59.592 40.000 16.32 0.00 34.27 1.90
128 129 5.547465 GCTTTTGGCCTAAGTTGGTTTATT 58.453 37.500 16.32 0.00 34.27 1.40
129 130 5.147330 GCTTTTGGCCTAAGTTGGTTTAT 57.853 39.130 16.32 0.00 34.27 1.40
130 131 4.594123 GCTTTTGGCCTAAGTTGGTTTA 57.406 40.909 16.32 0.00 34.27 2.01
131 132 3.469008 GCTTTTGGCCTAAGTTGGTTT 57.531 42.857 16.32 0.00 34.27 3.27
150 151 0.180642 GTACTCCCCCAAGCTTAGGC 59.819 60.000 5.25 0.00 39.06 3.93
151 152 0.464452 CGTACTCCCCCAAGCTTAGG 59.536 60.000 3.60 3.60 0.00 2.69
152 153 1.192428 ACGTACTCCCCCAAGCTTAG 58.808 55.000 0.00 0.00 0.00 2.18
153 154 2.530460 TACGTACTCCCCCAAGCTTA 57.470 50.000 0.00 0.00 0.00 3.09
154 155 1.485066 CATACGTACTCCCCCAAGCTT 59.515 52.381 0.00 0.00 0.00 3.74
155 156 1.120530 CATACGTACTCCCCCAAGCT 58.879 55.000 0.00 0.00 0.00 3.74
156 157 0.828677 ACATACGTACTCCCCCAAGC 59.171 55.000 0.00 0.00 0.00 4.01
157 158 1.411612 GGACATACGTACTCCCCCAAG 59.588 57.143 0.00 0.00 0.00 3.61
158 159 1.488390 GGACATACGTACTCCCCCAA 58.512 55.000 0.00 0.00 0.00 4.12
159 160 0.397535 GGGACATACGTACTCCCCCA 60.398 60.000 22.31 0.00 38.20 4.96
160 161 0.397535 TGGGACATACGTACTCCCCC 60.398 60.000 26.85 20.66 42.95 5.40
161 162 0.749049 GTGGGACATACGTACTCCCC 59.251 60.000 26.85 22.02 42.95 4.81
162 163 0.749049 GGTGGGACATACGTACTCCC 59.251 60.000 24.66 24.66 44.52 4.30
163 164 0.383231 CGGTGGGACATACGTACTCC 59.617 60.000 11.29 11.29 44.52 3.85
164 165 1.064654 GTCGGTGGGACATACGTACTC 59.935 57.143 0.00 0.00 45.36 2.59
165 166 1.098050 GTCGGTGGGACATACGTACT 58.902 55.000 0.00 0.00 45.36 2.73
166 167 3.629858 GTCGGTGGGACATACGTAC 57.370 57.895 0.00 0.00 45.36 3.67
174 175 3.307782 CGTAAATGTAATGTCGGTGGGAC 59.692 47.826 0.00 0.00 46.27 4.46
175 176 3.055963 ACGTAAATGTAATGTCGGTGGGA 60.056 43.478 0.00 0.00 0.00 4.37
176 177 3.264104 ACGTAAATGTAATGTCGGTGGG 58.736 45.455 0.00 0.00 0.00 4.61
177 178 4.389382 TGAACGTAAATGTAATGTCGGTGG 59.611 41.667 0.00 0.00 0.00 4.61
178 179 5.107414 TGTGAACGTAAATGTAATGTCGGTG 60.107 40.000 0.00 0.00 0.00 4.94
179 180 4.989797 TGTGAACGTAAATGTAATGTCGGT 59.010 37.500 0.00 0.00 0.00 4.69
180 181 5.107414 TGTGTGAACGTAAATGTAATGTCGG 60.107 40.000 0.00 0.00 0.00 4.79
181 182 5.781717 GTGTGTGAACGTAAATGTAATGTCG 59.218 40.000 0.00 0.00 0.00 4.35
182 183 6.884187 AGTGTGTGAACGTAAATGTAATGTC 58.116 36.000 0.00 0.00 0.00 3.06
183 184 6.480651 TGAGTGTGTGAACGTAAATGTAATGT 59.519 34.615 0.00 0.00 0.00 2.71
184 185 6.883129 TGAGTGTGTGAACGTAAATGTAATG 58.117 36.000 0.00 0.00 0.00 1.90
185 186 7.667043 ATGAGTGTGTGAACGTAAATGTAAT 57.333 32.000 0.00 0.00 0.00 1.89
186 187 7.348956 CAATGAGTGTGTGAACGTAAATGTAA 58.651 34.615 0.00 0.00 0.00 2.41
187 188 6.565060 GCAATGAGTGTGTGAACGTAAATGTA 60.565 38.462 0.00 0.00 0.00 2.29
188 189 5.747565 CAATGAGTGTGTGAACGTAAATGT 58.252 37.500 0.00 0.00 0.00 2.71
189 190 4.612614 GCAATGAGTGTGTGAACGTAAATG 59.387 41.667 0.00 0.00 0.00 2.32
190 191 4.515191 AGCAATGAGTGTGTGAACGTAAAT 59.485 37.500 0.00 0.00 0.00 1.40
191 192 3.874543 AGCAATGAGTGTGTGAACGTAAA 59.125 39.130 0.00 0.00 0.00 2.01
192 193 3.462982 AGCAATGAGTGTGTGAACGTAA 58.537 40.909 0.00 0.00 0.00 3.18
193 194 3.106242 AGCAATGAGTGTGTGAACGTA 57.894 42.857 0.00 0.00 0.00 3.57
194 195 1.953559 AGCAATGAGTGTGTGAACGT 58.046 45.000 0.00 0.00 0.00 3.99
195 196 3.317150 TCTAGCAATGAGTGTGTGAACG 58.683 45.455 0.00 0.00 0.00 3.95
196 197 4.692625 ACATCTAGCAATGAGTGTGTGAAC 59.307 41.667 0.00 0.00 0.00 3.18
197 198 4.898320 ACATCTAGCAATGAGTGTGTGAA 58.102 39.130 0.00 0.00 0.00 3.18
198 199 4.498241 GACATCTAGCAATGAGTGTGTGA 58.502 43.478 0.00 0.00 0.00 3.58
199 200 3.305361 CGACATCTAGCAATGAGTGTGTG 59.695 47.826 0.00 0.00 0.00 3.82
200 201 3.515630 CGACATCTAGCAATGAGTGTGT 58.484 45.455 0.00 0.00 0.00 3.72
201 202 2.862536 CCGACATCTAGCAATGAGTGTG 59.137 50.000 0.00 0.00 0.00 3.82
202 203 2.497675 ACCGACATCTAGCAATGAGTGT 59.502 45.455 0.00 0.00 0.00 3.55
203 204 2.862536 CACCGACATCTAGCAATGAGTG 59.137 50.000 0.00 0.87 0.00 3.51
204 205 2.739932 GCACCGACATCTAGCAATGAGT 60.740 50.000 0.00 0.00 0.00 3.41
205 206 1.863454 GCACCGACATCTAGCAATGAG 59.137 52.381 0.00 0.00 0.00 2.90
206 207 1.482182 AGCACCGACATCTAGCAATGA 59.518 47.619 0.00 0.00 0.00 2.57
207 208 1.863454 GAGCACCGACATCTAGCAATG 59.137 52.381 0.00 0.00 0.00 2.82
208 209 1.482182 TGAGCACCGACATCTAGCAAT 59.518 47.619 0.00 0.00 0.00 3.56
209 210 0.894835 TGAGCACCGACATCTAGCAA 59.105 50.000 0.00 0.00 0.00 3.91
210 211 1.114627 ATGAGCACCGACATCTAGCA 58.885 50.000 0.00 0.00 0.00 3.49
211 212 2.294791 AGTATGAGCACCGACATCTAGC 59.705 50.000 0.00 0.00 0.00 3.42
212 213 4.576216 AAGTATGAGCACCGACATCTAG 57.424 45.455 0.00 0.00 0.00 2.43
213 214 5.339008 AAAAGTATGAGCACCGACATCTA 57.661 39.130 0.00 0.00 0.00 1.98
214 215 3.895232 AAAGTATGAGCACCGACATCT 57.105 42.857 0.00 0.00 0.00 2.90
215 216 4.492570 CGAAAAAGTATGAGCACCGACATC 60.493 45.833 0.00 0.00 0.00 3.06
216 217 3.370978 CGAAAAAGTATGAGCACCGACAT 59.629 43.478 0.00 0.00 0.00 3.06
217 218 2.734606 CGAAAAAGTATGAGCACCGACA 59.265 45.455 0.00 0.00 0.00 4.35
218 219 2.474032 GCGAAAAAGTATGAGCACCGAC 60.474 50.000 0.00 0.00 0.00 4.79
219 220 1.730064 GCGAAAAAGTATGAGCACCGA 59.270 47.619 0.00 0.00 0.00 4.69
220 221 1.732259 AGCGAAAAAGTATGAGCACCG 59.268 47.619 0.00 0.00 0.00 4.94
221 222 2.484264 ACAGCGAAAAAGTATGAGCACC 59.516 45.455 0.00 0.00 0.00 5.01
222 223 3.813529 ACAGCGAAAAAGTATGAGCAC 57.186 42.857 0.00 0.00 0.00 4.40
223 224 7.494298 TGATATTACAGCGAAAAAGTATGAGCA 59.506 33.333 0.00 0.00 0.00 4.26
224 225 7.851508 TGATATTACAGCGAAAAAGTATGAGC 58.148 34.615 0.00 0.00 0.00 4.26
225 226 9.803130 CATGATATTACAGCGAAAAAGTATGAG 57.197 33.333 0.00 0.00 0.00 2.90
226 227 8.282592 GCATGATATTACAGCGAAAAAGTATGA 58.717 33.333 0.00 0.00 0.00 2.15
227 228 8.285394 AGCATGATATTACAGCGAAAAAGTATG 58.715 33.333 0.00 0.00 0.00 2.39
228 229 8.383318 AGCATGATATTACAGCGAAAAAGTAT 57.617 30.769 0.00 0.00 0.00 2.12
229 230 7.786178 AGCATGATATTACAGCGAAAAAGTA 57.214 32.000 0.00 0.00 0.00 2.24
230 231 6.683974 AGCATGATATTACAGCGAAAAAGT 57.316 33.333 0.00 0.00 0.00 2.66
231 232 7.855545 ACTAGCATGATATTACAGCGAAAAAG 58.144 34.615 0.00 0.00 0.00 2.27
232 233 7.786178 ACTAGCATGATATTACAGCGAAAAA 57.214 32.000 0.00 0.00 0.00 1.94
233 234 7.786178 AACTAGCATGATATTACAGCGAAAA 57.214 32.000 0.00 0.00 0.00 2.29
234 235 7.786178 AAACTAGCATGATATTACAGCGAAA 57.214 32.000 0.00 0.00 0.00 3.46
235 236 9.489084 AATAAACTAGCATGATATTACAGCGAA 57.511 29.630 0.00 0.00 0.00 4.70
236 237 9.489084 AAATAAACTAGCATGATATTACAGCGA 57.511 29.630 0.00 0.00 0.00 4.93
237 238 9.746711 GAAATAAACTAGCATGATATTACAGCG 57.253 33.333 0.00 0.00 0.00 5.18
266 267 8.655092 CAAACACACAAGAAGAAAGCATAAAAA 58.345 29.630 0.00 0.00 0.00 1.94
267 268 8.031864 TCAAACACACAAGAAGAAAGCATAAAA 58.968 29.630 0.00 0.00 0.00 1.52
268 269 7.542890 TCAAACACACAAGAAGAAAGCATAAA 58.457 30.769 0.00 0.00 0.00 1.40
269 270 7.094508 TCAAACACACAAGAAGAAAGCATAA 57.905 32.000 0.00 0.00 0.00 1.90
270 271 6.691754 TCAAACACACAAGAAGAAAGCATA 57.308 33.333 0.00 0.00 0.00 3.14
271 272 5.581126 TCAAACACACAAGAAGAAAGCAT 57.419 34.783 0.00 0.00 0.00 3.79
272 273 5.384063 TTCAAACACACAAGAAGAAAGCA 57.616 34.783 0.00 0.00 0.00 3.91
273 274 6.704512 TTTTCAAACACACAAGAAGAAAGC 57.295 33.333 0.00 0.00 0.00 3.51
274 275 7.384932 AGGTTTTTCAAACACACAAGAAGAAAG 59.615 33.333 2.00 0.00 0.00 2.62
275 276 7.213678 AGGTTTTTCAAACACACAAGAAGAAA 58.786 30.769 2.00 0.00 0.00 2.52
276 277 6.754193 AGGTTTTTCAAACACACAAGAAGAA 58.246 32.000 2.00 0.00 0.00 2.52
277 278 6.339587 AGGTTTTTCAAACACACAAGAAGA 57.660 33.333 2.00 0.00 0.00 2.87
278 279 8.527567 TTAAGGTTTTTCAAACACACAAGAAG 57.472 30.769 2.00 0.00 0.00 2.85
279 280 8.361139 TCTTAAGGTTTTTCAAACACACAAGAA 58.639 29.630 1.85 0.00 0.00 2.52
280 281 7.887381 TCTTAAGGTTTTTCAAACACACAAGA 58.113 30.769 1.85 2.63 0.00 3.02
281 282 8.527567 TTCTTAAGGTTTTTCAAACACACAAG 57.472 30.769 1.85 0.69 0.00 3.16
282 283 8.888579 TTTCTTAAGGTTTTTCAAACACACAA 57.111 26.923 1.85 0.00 0.00 3.33
283 284 8.766151 GTTTTCTTAAGGTTTTTCAAACACACA 58.234 29.630 1.85 0.00 0.00 3.72
284 285 8.225107 GGTTTTCTTAAGGTTTTTCAAACACAC 58.775 33.333 1.85 0.00 0.00 3.82
285 286 7.931948 TGGTTTTCTTAAGGTTTTTCAAACACA 59.068 29.630 1.85 0.00 0.00 3.72
286 287 8.312896 TGGTTTTCTTAAGGTTTTTCAAACAC 57.687 30.769 1.85 0.00 0.00 3.32
287 288 8.904099 TTGGTTTTCTTAAGGTTTTTCAAACA 57.096 26.923 1.85 0.00 0.00 2.83
335 336 9.299465 ACTACTCAGTAAGAAAGTAAACTAGCT 57.701 33.333 0.00 0.00 31.45 3.32
336 337 9.344309 CACTACTCAGTAAGAAAGTAAACTAGC 57.656 37.037 0.00 0.00 32.21 3.42
337 338 9.843334 CCACTACTCAGTAAGAAAGTAAACTAG 57.157 37.037 0.00 0.00 32.21 2.57
338 339 8.800332 CCCACTACTCAGTAAGAAAGTAAACTA 58.200 37.037 0.00 0.00 32.21 2.24
339 340 7.508296 TCCCACTACTCAGTAAGAAAGTAAACT 59.492 37.037 0.00 0.00 32.21 2.66
340 341 7.598118 GTCCCACTACTCAGTAAGAAAGTAAAC 59.402 40.741 0.00 0.00 32.21 2.01
341 342 7.288389 TGTCCCACTACTCAGTAAGAAAGTAAA 59.712 37.037 0.00 0.00 32.21 2.01
342 343 6.779049 TGTCCCACTACTCAGTAAGAAAGTAA 59.221 38.462 0.00 0.00 32.21 2.24
343 344 6.208204 GTGTCCCACTACTCAGTAAGAAAGTA 59.792 42.308 0.00 0.00 32.21 2.24
344 345 5.010820 GTGTCCCACTACTCAGTAAGAAAGT 59.989 44.000 0.00 0.00 32.21 2.66
345 346 5.010719 TGTGTCCCACTACTCAGTAAGAAAG 59.989 44.000 0.00 0.00 35.11 2.62
346 347 4.897076 TGTGTCCCACTACTCAGTAAGAAA 59.103 41.667 0.00 0.00 35.11 2.52
347 348 4.476297 TGTGTCCCACTACTCAGTAAGAA 58.524 43.478 0.00 0.00 35.11 2.52
348 349 4.108501 TGTGTCCCACTACTCAGTAAGA 57.891 45.455 0.00 0.00 35.11 2.10
349 350 4.281182 AGTTGTGTCCCACTACTCAGTAAG 59.719 45.833 5.79 0.00 44.27 2.34
350 351 4.220724 AGTTGTGTCCCACTACTCAGTAA 58.779 43.478 5.79 0.00 44.27 2.24
351 352 3.840991 AGTTGTGTCCCACTACTCAGTA 58.159 45.455 5.79 0.00 44.27 2.74
352 353 2.679082 AGTTGTGTCCCACTACTCAGT 58.321 47.619 5.79 0.00 44.27 3.41
353 354 3.827302 ACTAGTTGTGTCCCACTACTCAG 59.173 47.826 13.30 11.63 44.27 3.35
354 355 3.572682 CACTAGTTGTGTCCCACTACTCA 59.427 47.826 13.30 2.84 44.27 3.41
355 356 3.825014 TCACTAGTTGTGTCCCACTACTC 59.175 47.826 13.30 0.00 44.27 2.59
357 358 3.319972 TGTCACTAGTTGTGTCCCACTAC 59.680 47.826 4.63 1.52 46.27 2.73
358 359 3.568443 TGTCACTAGTTGTGTCCCACTA 58.432 45.455 4.63 0.00 46.27 2.74
359 360 2.394632 TGTCACTAGTTGTGTCCCACT 58.605 47.619 4.63 0.00 46.27 4.00
360 361 2.902705 TGTCACTAGTTGTGTCCCAC 57.097 50.000 4.63 0.00 46.27 4.61
361 362 5.554437 TTTATGTCACTAGTTGTGTCCCA 57.446 39.130 4.63 1.72 46.27 4.37
362 363 6.170506 TCATTTATGTCACTAGTTGTGTCCC 58.829 40.000 4.63 0.00 46.27 4.46
363 364 7.849804 ATCATTTATGTCACTAGTTGTGTCC 57.150 36.000 4.63 0.00 46.27 4.02
370 371 9.747898 TGGGTTTTTATCATTTATGTCACTAGT 57.252 29.630 0.00 0.00 0.00 2.57
386 387 9.816354 CCGATCTATTCATTTTTGGGTTTTTAT 57.184 29.630 0.00 0.00 0.00 1.40
387 388 9.026121 TCCGATCTATTCATTTTTGGGTTTTTA 57.974 29.630 0.00 0.00 0.00 1.52
388 389 7.902087 TCCGATCTATTCATTTTTGGGTTTTT 58.098 30.769 0.00 0.00 0.00 1.94
389 390 7.475137 TCCGATCTATTCATTTTTGGGTTTT 57.525 32.000 0.00 0.00 0.00 2.43
390 391 7.178451 ACTTCCGATCTATTCATTTTTGGGTTT 59.822 33.333 0.00 0.00 0.00 3.27
391 392 6.663523 ACTTCCGATCTATTCATTTTTGGGTT 59.336 34.615 0.00 0.00 0.00 4.11
392 393 6.187682 ACTTCCGATCTATTCATTTTTGGGT 58.812 36.000 0.00 0.00 0.00 4.51
393 394 6.699575 ACTTCCGATCTATTCATTTTTGGG 57.300 37.500 0.00 0.00 0.00 4.12
394 395 8.986477 AAAACTTCCGATCTATTCATTTTTGG 57.014 30.769 0.00 0.00 0.00 3.28
395 396 9.846248 AGAAAACTTCCGATCTATTCATTTTTG 57.154 29.630 0.00 0.00 0.00 2.44
397 398 8.391106 CGAGAAAACTTCCGATCTATTCATTTT 58.609 33.333 0.00 0.00 0.00 1.82
398 399 7.466050 GCGAGAAAACTTCCGATCTATTCATTT 60.466 37.037 0.00 0.00 0.00 2.32
399 400 6.018669 GCGAGAAAACTTCCGATCTATTCATT 60.019 38.462 0.00 0.00 0.00 2.57
400 401 5.463724 GCGAGAAAACTTCCGATCTATTCAT 59.536 40.000 0.00 0.00 0.00 2.57
401 402 4.804139 GCGAGAAAACTTCCGATCTATTCA 59.196 41.667 0.00 0.00 0.00 2.57
402 403 4.804139 TGCGAGAAAACTTCCGATCTATTC 59.196 41.667 0.00 0.00 0.00 1.75
403 404 4.755411 TGCGAGAAAACTTCCGATCTATT 58.245 39.130 0.00 0.00 0.00 1.73
404 405 4.386867 TGCGAGAAAACTTCCGATCTAT 57.613 40.909 0.00 0.00 0.00 1.98
405 406 3.861276 TGCGAGAAAACTTCCGATCTA 57.139 42.857 0.00 0.00 0.00 1.98
406 407 2.743636 TGCGAGAAAACTTCCGATCT 57.256 45.000 0.00 0.00 0.00 2.75
407 408 3.806316 TTTGCGAGAAAACTTCCGATC 57.194 42.857 0.00 0.00 0.00 3.69
408 409 4.561735 TTTTTGCGAGAAAACTTCCGAT 57.438 36.364 0.00 0.00 0.00 4.18
488 489 2.611292 GTCCATCAGTCTGCTGTTATGC 59.389 50.000 3.15 0.00 43.05 3.14
518 519 1.000955 ACTTCAACAGCGTGTAGAGGG 59.999 52.381 0.16 0.00 0.00 4.30
522 523 3.994392 ACCATTACTTCAACAGCGTGTAG 59.006 43.478 0.00 0.00 0.00 2.74
546 547 9.995957 CGATGACTTGACCTTGTATATATCTAG 57.004 37.037 0.00 0.00 0.00 2.43
553 554 4.028131 ACCCGATGACTTGACCTTGTATA 58.972 43.478 0.00 0.00 0.00 1.47
583 584 1.601903 GCATGACTTCCACGACAAACA 59.398 47.619 0.00 0.00 0.00 2.83
587 588 0.602638 GGTGCATGACTTCCACGACA 60.603 55.000 0.00 0.00 0.00 4.35
588 589 1.298859 GGGTGCATGACTTCCACGAC 61.299 60.000 0.00 0.00 0.00 4.34
589 590 1.003839 GGGTGCATGACTTCCACGA 60.004 57.895 0.00 0.00 0.00 4.35
670 671 8.797438 GGGAAAAAGAATATCTGAACAAGAGTT 58.203 33.333 0.00 0.00 38.67 3.01
679 680 4.439057 CGTCCGGGAAAAAGAATATCTGA 58.561 43.478 0.00 0.00 0.00 3.27
721 722 4.624452 GCATTTGCCTCAAGTTTGATTCTC 59.376 41.667 0.00 0.00 36.46 2.87
722 723 4.282703 AGCATTTGCCTCAAGTTTGATTCT 59.717 37.500 0.00 0.00 43.38 2.40
761 762 3.417069 TCCACCACACAATAGGTTCAG 57.583 47.619 0.00 0.00 35.52 3.02
829 830 1.291877 GCAAGCCACTGTGGACGTAG 61.292 60.000 30.23 14.46 40.96 3.51
855 856 7.279981 TCCATGAATCTTCCACGTTACTAATTG 59.720 37.037 0.00 0.00 0.00 2.32
883 884 4.491234 TTGACGTTTTCACACACAAACT 57.509 36.364 0.00 0.00 32.26 2.66
884 885 5.755330 ATTTGACGTTTTCACACACAAAC 57.245 34.783 0.00 0.00 32.26 2.93
949 950 5.164954 GTGCTAGTAGAAGTTTGGTCTGAG 58.835 45.833 0.00 0.00 0.00 3.35
961 962 1.271379 CCACCGTGTGTGCTAGTAGAA 59.729 52.381 0.00 0.00 44.01 2.10
977 978 1.890876 TGTGTGTTAGTGATGCCACC 58.109 50.000 0.00 0.00 44.22 4.61
1040 1041 2.180276 CGAGGAGAAAAAGAGGGAGGA 58.820 52.381 0.00 0.00 0.00 3.71
1344 1346 3.585289 TGAAGTCTTGGCCCATGTACTTA 59.415 43.478 0.00 0.00 0.00 2.24
1359 1361 4.013050 TGACAGAGATGTCGATGAAGTCT 58.987 43.478 4.12 0.00 41.43 3.24
1366 1368 2.032463 CGTCGATGACAGAGATGTCGAT 60.032 50.000 0.00 0.00 42.37 3.59
1377 1379 1.336148 ACGTTAAAGCCGTCGATGACA 60.336 47.619 6.11 0.00 31.97 3.58
1378 1380 1.058695 CACGTTAAAGCCGTCGATGAC 59.941 52.381 6.11 0.00 36.17 3.06
1392 1394 1.349688 AGAAAGTCCATGGGCACGTTA 59.650 47.619 20.74 0.00 0.00 3.18
1792 1794 8.812972 ACACAGATGGTAACTTACTATTTCTCA 58.187 33.333 0.00 0.00 29.40 3.27
1813 1815 5.276207 CGTATCGCCAAGTAACATTACACAG 60.276 44.000 4.67 0.00 36.12 3.66
1876 1879 5.587043 CACCTATTCCCACGCTTTTACAATA 59.413 40.000 0.00 0.00 0.00 1.90
1888 1891 2.084546 GCACAACTCACCTATTCCCAC 58.915 52.381 0.00 0.00 0.00 4.61
2094 2106 9.403583 TGAAATTAACTAGAAAACCTGTCACTT 57.596 29.630 0.00 0.00 0.00 3.16
2101 2113 9.251440 GGGGTAATGAAATTAACTAGAAAACCT 57.749 33.333 0.00 0.00 45.75 3.50
2102 2114 8.186163 CGGGGTAATGAAATTAACTAGAAAACC 58.814 37.037 0.00 0.00 45.75 3.27
2118 2130 9.985730 CATAGTACTAAATTTACGGGGTAATGA 57.014 33.333 6.70 0.00 0.00 2.57
2242 2255 6.375455 ACTTGGTCAAACATAGACATGGATTC 59.625 38.462 0.00 0.00 37.74 2.52
2245 2258 5.241403 ACTTGGTCAAACATAGACATGGA 57.759 39.130 0.00 0.00 37.74 3.41
2249 2262 7.880713 TGCTATAAACTTGGTCAAACATAGACA 59.119 33.333 0.00 0.00 37.74 3.41
2250 2263 8.263940 TGCTATAAACTTGGTCAAACATAGAC 57.736 34.615 0.00 0.00 35.29 2.59
2304 2334 9.049523 TCATTACACTAGCTTCATCATGAAATC 57.950 33.333 0.00 0.00 35.73 2.17
2315 2345 8.072567 CCAATAGCAAATCATTACACTAGCTTC 58.927 37.037 0.00 0.00 32.70 3.86
2404 2435 9.550406 TTCCGTTCCTAAATATAAGGTGTATTG 57.450 33.333 4.41 0.00 35.48 1.90
2416 2447 9.595823 CACTCTCTTTTATTCCGTTCCTAAATA 57.404 33.333 0.00 0.00 0.00 1.40
2420 2451 6.845758 TCACTCTCTTTTATTCCGTTCCTA 57.154 37.500 0.00 0.00 0.00 2.94
2422 2453 5.163982 CGTTCACTCTCTTTTATTCCGTTCC 60.164 44.000 0.00 0.00 0.00 3.62
2424 2455 5.295152 ACGTTCACTCTCTTTTATTCCGTT 58.705 37.500 0.00 0.00 0.00 4.44
2425 2456 4.879598 ACGTTCACTCTCTTTTATTCCGT 58.120 39.130 0.00 0.00 0.00 4.69
2426 2457 6.453922 GCTTACGTTCACTCTCTTTTATTCCG 60.454 42.308 0.00 0.00 0.00 4.30
2427 2458 6.367969 TGCTTACGTTCACTCTCTTTTATTCC 59.632 38.462 0.00 0.00 0.00 3.01
2428 2459 7.116519 ACTGCTTACGTTCACTCTCTTTTATTC 59.883 37.037 0.00 0.00 0.00 1.75
2429 2460 6.929606 ACTGCTTACGTTCACTCTCTTTTATT 59.070 34.615 0.00 0.00 0.00 1.40
2430 2461 6.456501 ACTGCTTACGTTCACTCTCTTTTAT 58.543 36.000 0.00 0.00 0.00 1.40
2445 2476 5.168569 TCTTGATTTGTAGGACTGCTTACG 58.831 41.667 0.00 0.00 29.78 3.18
2450 2481 5.470098 TCTTGTTCTTGATTTGTAGGACTGC 59.530 40.000 0.00 0.00 0.00 4.40
2453 2484 7.361286 GGTCATCTTGTTCTTGATTTGTAGGAC 60.361 40.741 0.00 0.00 0.00 3.85
2557 2588 1.723608 ATGTGCGTGTGTGTGTTGGG 61.724 55.000 0.00 0.00 0.00 4.12
2570 2601 1.369568 CAGTGTGTGTGCATGTGCG 60.370 57.895 0.00 0.00 45.83 5.34
2571 2602 1.659335 GCAGTGTGTGTGCATGTGC 60.659 57.895 0.00 0.00 40.86 4.57
2572 2603 1.728672 TGCAGTGTGTGTGCATGTG 59.271 52.632 0.00 0.00 45.96 3.21
2573 2604 4.239162 TGCAGTGTGTGTGCATGT 57.761 50.000 0.00 0.00 45.96 3.21
2577 2608 2.026590 GCCTTGCAGTGTGTGTGC 59.973 61.111 0.00 0.00 41.59 4.57
2606 2637 1.749258 GGAATCACGGAGGCCAACC 60.749 63.158 5.01 7.29 0.00 3.77
2628 2659 6.069963 GCACATATATTCCTCCTTACCCTGAT 60.070 42.308 0.00 0.00 0.00 2.90
2629 2660 5.248477 GCACATATATTCCTCCTTACCCTGA 59.752 44.000 0.00 0.00 0.00 3.86
2630 2661 5.491982 GCACATATATTCCTCCTTACCCTG 58.508 45.833 0.00 0.00 0.00 4.45
2631 2662 4.536489 GGCACATATATTCCTCCTTACCCT 59.464 45.833 0.00 0.00 0.00 4.34
2666 2697 6.306987 GGATTCTCACCATTACCCAATACAT 58.693 40.000 0.00 0.00 0.00 2.29
2667 2698 5.686387 CGGATTCTCACCATTACCCAATACA 60.686 44.000 0.00 0.00 0.00 2.29
2668 2699 4.755123 CGGATTCTCACCATTACCCAATAC 59.245 45.833 0.00 0.00 0.00 1.89
2669 2700 4.656575 TCGGATTCTCACCATTACCCAATA 59.343 41.667 0.00 0.00 0.00 1.90
2672 2703 2.434336 CTCGGATTCTCACCATTACCCA 59.566 50.000 0.00 0.00 0.00 4.51
2681 2712 3.574396 TCCATCATACCTCGGATTCTCAC 59.426 47.826 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.