Multiple sequence alignment - TraesCS4D01G014500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G014500 chr4D 100.000 2559 0 0 1 2559 6592947 6595505 0.000000e+00 4726.0
1 TraesCS4D01G014500 chr4D 100.000 2479 0 0 2799 5277 6595745 6598223 0.000000e+00 4578.0
2 TraesCS4D01G014500 chr4D 95.161 62 3 0 1655 1716 472879918 472879857 1.210000e-16 99.0
3 TraesCS4D01G014500 chr4A 94.760 687 30 2 3385 4071 596789937 596789257 0.000000e+00 1064.0
4 TraesCS4D01G014500 chr4A 92.982 570 25 4 2799 3356 596790502 596789936 0.000000e+00 817.0
5 TraesCS4D01G014500 chr4A 95.842 481 18 2 4067 4547 596789221 596788743 0.000000e+00 776.0
6 TraesCS4D01G014500 chr4A 85.948 612 43 16 691 1280 596792653 596792063 9.710000e-172 614.0
7 TraesCS4D01G014500 chr4A 86.207 551 49 9 2012 2557 596791345 596790817 5.930000e-159 571.0
8 TraesCS4D01G014500 chr4A 87.879 396 36 7 1267 1655 596792001 596791611 6.230000e-124 455.0
9 TraesCS4D01G014500 chr4A 80.534 637 58 22 1 607 596793347 596792747 3.780000e-116 429.0
10 TraesCS4D01G014500 chr4A 93.182 264 15 3 1714 1974 596791609 596791346 8.290000e-103 385.0
11 TraesCS4D01G014500 chr4A 89.919 248 19 3 4559 4805 596788657 596788415 1.100000e-81 315.0
12 TraesCS4D01G014500 chr4A 90.123 162 11 2 5069 5225 596786983 596786822 6.930000e-49 206.0
13 TraesCS4D01G014500 chr4A 86.747 83 7 3 631 710 596792744 596792663 7.280000e-14 89.8
14 TraesCS4D01G014500 chr4B 87.943 846 57 26 615 1447 11749397 11750210 0.000000e+00 955.0
15 TraesCS4D01G014500 chr4B 92.163 689 29 8 3385 4071 11752005 11752670 0.000000e+00 950.0
16 TraesCS4D01G014500 chr4B 94.737 475 22 3 4074 4547 11752714 11753186 0.000000e+00 736.0
17 TraesCS4D01G014500 chr4B 89.946 557 46 7 2012 2559 11750630 11751185 0.000000e+00 710.0
18 TraesCS4D01G014500 chr4B 88.718 390 8 4 2970 3356 11751650 11752006 1.350000e-120 444.0
19 TraesCS4D01G014500 chr4B 88.462 338 23 6 4939 5270 11753913 11754240 1.380000e-105 394.0
20 TraesCS4D01G014500 chr4B 92.996 257 13 3 1712 1965 11750366 11750620 2.320000e-98 370.0
21 TraesCS4D01G014500 chr4B 90.395 177 11 3 5058 5229 11895336 11895511 1.480000e-55 228.0
22 TraesCS4D01G014500 chr4B 89.205 176 10 6 436 607 11749090 11749260 1.490000e-50 211.0
23 TraesCS4D01G014500 chr4B 87.209 172 17 2 4559 4730 11753278 11753444 1.940000e-44 191.0
24 TraesCS4D01G014500 chr4B 91.429 140 9 1 1520 1656 11750228 11750367 6.980000e-44 189.0
25 TraesCS4D01G014500 chr5B 82.633 357 49 11 382 730 391463131 391463482 2.390000e-78 303.0
26 TraesCS4D01G014500 chr5B 92.537 67 3 1 1647 1713 69548042 69548106 1.560000e-15 95.3
27 TraesCS4D01G014500 chr7B 85.425 247 27 8 381 620 479532512 479532268 1.130000e-61 248.0
28 TraesCS4D01G014500 chr1B 87.981 208 20 4 955 1159 144126150 144125945 1.900000e-59 241.0
29 TraesCS4D01G014500 chr1B 87.981 208 20 4 955 1159 144231252 144231047 1.900000e-59 241.0
30 TraesCS4D01G014500 chr3A 79.715 281 45 11 428 699 674079908 674080185 5.390000e-45 193.0
31 TraesCS4D01G014500 chr3A 80.097 206 31 4 1 203 310581800 310581998 1.530000e-30 145.0
32 TraesCS4D01G014500 chr3A 92.424 66 3 1 1655 1720 466807007 466806944 5.630000e-15 93.5
33 TraesCS4D01G014500 chr2D 84.393 173 23 3 9 178 576885725 576885554 3.270000e-37 167.0
34 TraesCS4D01G014500 chr6A 76.677 313 60 11 422 724 31740496 31740187 1.520000e-35 161.0
35 TraesCS4D01G014500 chr6A 82.249 169 26 4 13 178 52812608 52812441 5.510000e-30 143.0
36 TraesCS4D01G014500 chr6A 93.651 63 2 1 1651 1713 454653998 454654058 5.630000e-15 93.5
37 TraesCS4D01G014500 chr7A 82.383 193 25 3 13 203 555432685 555432500 5.470000e-35 159.0
38 TraesCS4D01G014500 chr7A 83.432 169 23 3 13 178 465790878 465791044 9.150000e-33 152.0
39 TraesCS4D01G014500 chr1A 90.984 122 6 5 4299 4419 49005299 49005416 5.470000e-35 159.0
40 TraesCS4D01G014500 chr2A 83.432 169 24 4 13 178 762691994 762691827 2.540000e-33 154.0
41 TraesCS4D01G014500 chr2A 84.177 158 21 3 13 167 569997252 569997096 3.290000e-32 150.0
42 TraesCS4D01G014500 chr2A 84.524 84 9 3 294 373 532488371 532488454 4.380000e-11 80.5
43 TraesCS4D01G014500 chr3B 82.320 181 27 3 1 178 665990098 665990276 9.150000e-33 152.0
44 TraesCS4D01G014500 chr5A 83.133 166 23 4 13 178 636292323 636292163 4.260000e-31 147.0
45 TraesCS4D01G014500 chr5A 89.744 78 5 2 1642 1717 558168846 558168922 4.350000e-16 97.1
46 TraesCS4D01G014500 chr7D 82.069 145 20 5 596 735 431077283 431077426 9.280000e-23 119.0
47 TraesCS4D01G014500 chr3D 95.238 63 1 1 1653 1715 435451256 435451316 1.210000e-16 99.0
48 TraesCS4D01G014500 chr6D 93.750 64 3 1 1651 1713 317011454 317011517 1.560000e-15 95.3
49 TraesCS4D01G014500 chr5D 93.651 63 2 1 1655 1717 273117943 273117883 5.630000e-15 93.5
50 TraesCS4D01G014500 chr2B 92.424 66 1 4 1655 1720 500656302 500656241 2.020000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G014500 chr4D 6592947 6598223 5276 False 4652.000000 4726 100.000000 1 5277 2 chr4D.!!$F1 5276
1 TraesCS4D01G014500 chr4A 596786822 596793347 6525 True 520.163636 1064 89.465727 1 5225 11 chr4A.!!$R1 5224
2 TraesCS4D01G014500 chr4B 11749090 11754240 5150 False 515.000000 955 90.280800 436 5270 10 chr4B.!!$F2 4834

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
966 1183 1.040339 AAACGCCCCAAAAGCTCACA 61.040 50.0 0.00 0.0 0.00 3.58 F
1208 1429 0.251297 TCCAAAGGTGCCCACTCATG 60.251 55.0 0.00 0.0 0.00 3.07 F
1983 2296 0.179081 CCGTAGGCCTTGAACTAGCC 60.179 60.0 12.58 0.0 46.14 3.93 F
2950 3375 0.250727 AGCGTATGTTGCTGTGGGTT 60.251 50.0 0.00 0.0 42.14 4.11 F
3092 3517 1.559065 GGACCAACCTTCCCCATCGA 61.559 60.0 0.00 0.0 35.41 3.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1785 2095 0.250295 CAGCCCAGACGTGAAAAGGA 60.250 55.000 0.00 0.00 0.00 3.36 R
2370 2696 0.321564 TACACTGTGATGGCTGGTGC 60.322 55.000 15.86 0.00 38.76 5.01 R
3699 4135 0.169009 GATGACTTCGGGCAACAAGC 59.831 55.000 0.00 0.00 44.65 4.01 R
4046 4484 0.519077 CTGCCCTCGAAGTTTGAAGC 59.481 55.000 7.55 7.55 0.00 3.86 R
4489 4969 1.083657 CGTTGCCAAGTCGAACACG 60.084 57.895 0.00 0.00 0.00 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 7.976135 AATTATAGGAAGTGAGATGACATGC 57.024 36.000 0.00 0.00 0.00 4.06
51 52 3.928005 AGGAAGTGAGATGACATGCAT 57.072 42.857 0.00 0.00 40.77 3.96
157 162 2.799126 ATGCGAATGGTTGGTTCCTA 57.201 45.000 0.00 0.00 0.00 2.94
158 163 2.799126 TGCGAATGGTTGGTTCCTAT 57.201 45.000 0.00 0.00 0.00 2.57
159 164 3.916359 TGCGAATGGTTGGTTCCTATA 57.084 42.857 0.00 0.00 0.00 1.31
160 165 3.537580 TGCGAATGGTTGGTTCCTATAC 58.462 45.455 0.00 0.00 0.00 1.47
161 166 3.199071 TGCGAATGGTTGGTTCCTATACT 59.801 43.478 0.00 0.00 0.00 2.12
162 167 4.406326 TGCGAATGGTTGGTTCCTATACTA 59.594 41.667 0.00 0.00 0.00 1.82
163 168 4.748600 GCGAATGGTTGGTTCCTATACTAC 59.251 45.833 0.00 0.00 0.00 2.73
179 184 9.881649 TCCTATACTACATACTACATAGGAACG 57.118 37.037 5.82 0.00 40.49 3.95
203 208 7.176690 ACGAGAATTCATTCCTACAAACCAAAT 59.823 33.333 8.44 0.00 37.51 2.32
204 209 7.485913 CGAGAATTCATTCCTACAAACCAAATG 59.514 37.037 8.44 0.00 37.51 2.32
205 210 7.099120 AGAATTCATTCCTACAAACCAAATGC 58.901 34.615 8.44 0.00 37.51 3.56
206 211 6.610075 ATTCATTCCTACAAACCAAATGCT 57.390 33.333 0.00 0.00 0.00 3.79
207 212 5.643379 TCATTCCTACAAACCAAATGCTC 57.357 39.130 0.00 0.00 0.00 4.26
209 214 3.517296 TCCTACAAACCAAATGCTCCA 57.483 42.857 0.00 0.00 0.00 3.86
215 243 4.406456 ACAAACCAAATGCTCCACTCATA 58.594 39.130 0.00 0.00 0.00 2.15
216 244 5.018809 ACAAACCAAATGCTCCACTCATAT 58.981 37.500 0.00 0.00 0.00 1.78
227 255 6.291377 TGCTCCACTCATATTGTAGAATTCC 58.709 40.000 0.65 0.00 0.00 3.01
245 273 3.629142 TCCTACAAAGCTAAAGGAGGC 57.371 47.619 6.41 0.00 33.18 4.70
247 275 2.239907 CCTACAAAGCTAAAGGAGGCCT 59.760 50.000 3.86 3.86 33.87 5.19
248 276 3.454812 CCTACAAAGCTAAAGGAGGCCTA 59.545 47.826 4.42 0.00 31.13 3.93
254 282 4.698201 AGCTAAAGGAGGCCTAAGAATC 57.302 45.455 4.42 0.00 31.13 2.52
258 286 5.221823 GCTAAAGGAGGCCTAAGAATCTCAT 60.222 44.000 4.42 0.00 31.13 2.90
263 291 4.103943 GGAGGCCTAAGAATCTCATTCCTT 59.896 45.833 4.42 0.00 40.13 3.36
272 300 7.459795 AAGAATCTCATTCCTTCAAAACTCC 57.540 36.000 0.00 0.00 40.13 3.85
273 301 6.788218 AGAATCTCATTCCTTCAAAACTCCT 58.212 36.000 0.00 0.00 40.13 3.69
274 302 7.922382 AGAATCTCATTCCTTCAAAACTCCTA 58.078 34.615 0.00 0.00 40.13 2.94
275 303 7.826744 AGAATCTCATTCCTTCAAAACTCCTAC 59.173 37.037 0.00 0.00 40.13 3.18
276 304 6.433847 TCTCATTCCTTCAAAACTCCTACA 57.566 37.500 0.00 0.00 0.00 2.74
277 305 6.837312 TCTCATTCCTTCAAAACTCCTACAA 58.163 36.000 0.00 0.00 0.00 2.41
278 306 7.287061 TCTCATTCCTTCAAAACTCCTACAAA 58.713 34.615 0.00 0.00 0.00 2.83
279 307 7.777910 TCTCATTCCTTCAAAACTCCTACAAAA 59.222 33.333 0.00 0.00 0.00 2.44
280 308 8.299990 TCATTCCTTCAAAACTCCTACAAAAA 57.700 30.769 0.00 0.00 0.00 1.94
281 309 8.923270 TCATTCCTTCAAAACTCCTACAAAAAT 58.077 29.630 0.00 0.00 0.00 1.82
317 345 4.136796 TCCTATGATCCAAATGGCTTTCG 58.863 43.478 0.00 0.00 34.44 3.46
365 394 8.212312 TCAAATACTACAAGTCTACAACCCAAA 58.788 33.333 0.00 0.00 0.00 3.28
373 402 1.210967 TCTACAACCCAAATAGGCCCG 59.789 52.381 0.00 0.00 35.39 6.13
380 409 1.210967 CCCAAATAGGCCCGTAGTGAA 59.789 52.381 0.00 0.00 35.39 3.18
500 529 8.997621 TCTGTAGAAACTTGTATGTATTCACC 57.002 34.615 0.00 0.00 0.00 4.02
504 533 9.162764 GTAGAAACTTGTATGTATTCACCATGT 57.837 33.333 0.00 0.00 0.00 3.21
508 537 8.677148 AACTTGTATGTATTCACCATGTATCC 57.323 34.615 0.00 0.00 0.00 2.59
509 538 7.801104 ACTTGTATGTATTCACCATGTATCCA 58.199 34.615 0.00 0.00 0.00 3.41
510 539 8.439971 ACTTGTATGTATTCACCATGTATCCAT 58.560 33.333 0.00 0.00 0.00 3.41
511 540 9.942850 CTTGTATGTATTCACCATGTATCCATA 57.057 33.333 0.00 0.00 0.00 2.74
752 952 5.588568 TTGGAAACGCATTGCTAATTTTG 57.411 34.783 7.12 0.00 0.00 2.44
756 956 2.879826 ACGCATTGCTAATTTTGGCTC 58.120 42.857 7.12 0.00 35.49 4.70
780 980 1.977009 GGCCCAGCCCAAGTACAAC 60.977 63.158 0.00 0.00 44.06 3.32
797 997 1.058428 AACCCCGGCCTATAACTCCC 61.058 60.000 0.00 0.00 0.00 4.30
798 998 1.460689 CCCCGGCCTATAACTCCCA 60.461 63.158 0.00 0.00 0.00 4.37
816 1016 5.075344 ACTCCCAACCAAACCCTAATCTTAA 59.925 40.000 0.00 0.00 0.00 1.85
847 1047 1.341606 GTTTTCAGTCTCTCGCCTCG 58.658 55.000 0.00 0.00 0.00 4.63
934 1151 4.933064 CGTCCTCCGCATCTCGCC 62.933 72.222 0.00 0.00 37.30 5.54
956 1173 3.822035 TCCAACCCAAACGCCCCA 61.822 61.111 0.00 0.00 0.00 4.96
961 1178 2.030412 CCCAAACGCCCCAAAAGC 59.970 61.111 0.00 0.00 0.00 3.51
962 1179 2.506957 CCCAAACGCCCCAAAAGCT 61.507 57.895 0.00 0.00 0.00 3.74
966 1183 1.040339 AAACGCCCCAAAAGCTCACA 61.040 50.000 0.00 0.00 0.00 3.58
977 1194 2.959465 AAGCTCACAAAACCCTAGCT 57.041 45.000 0.00 0.00 45.12 3.32
987 1208 5.768164 CACAAAACCCTAGCTTTCTTCCTAA 59.232 40.000 0.00 0.00 0.00 2.69
1082 1303 3.499737 CATCGGGCTGGTGTTCGC 61.500 66.667 0.00 0.00 0.00 4.70
1118 1339 1.982395 AGATGGCGGTGGAGAACGA 60.982 57.895 0.00 0.00 0.00 3.85
1208 1429 0.251297 TCCAAAGGTGCCCACTCATG 60.251 55.000 0.00 0.00 0.00 3.07
1231 1452 1.301293 CCCTTCAGCACCCTCCTTC 59.699 63.158 0.00 0.00 0.00 3.46
1250 1473 1.404391 TCGATTGCGTCTTAGGTCCTC 59.596 52.381 0.00 0.00 38.98 3.71
1251 1474 1.841450 GATTGCGTCTTAGGTCCTCG 58.159 55.000 0.00 0.00 0.00 4.63
1252 1475 1.404391 GATTGCGTCTTAGGTCCTCGA 59.596 52.381 0.00 0.00 0.00 4.04
1265 1488 1.002251 GTCCTCGACGAATAGCTCCAG 60.002 57.143 0.00 0.00 0.00 3.86
1352 1655 3.009723 CACAACCTGACATGTCCATACC 58.990 50.000 22.85 0.00 0.00 2.73
1372 1675 7.201776 CCATACCATGATCGGTGAAACAATTTA 60.202 37.037 0.00 0.00 40.39 1.40
1376 1679 7.392113 ACCATGATCGGTGAAACAATTTAGTTA 59.608 33.333 0.00 0.00 39.98 2.24
1377 1680 7.696453 CCATGATCGGTGAAACAATTTAGTTAC 59.304 37.037 0.00 0.00 39.98 2.50
1453 1756 2.164219 CGTGGCCTTTTGTAATGATGCT 59.836 45.455 3.32 0.00 0.00 3.79
1471 1774 2.539346 CTCATTTCAGCTTTGAGCCG 57.461 50.000 0.00 0.00 43.77 5.52
1477 1780 2.772739 CAGCTTTGAGCCGCTGTAT 58.227 52.632 0.00 0.00 46.38 2.29
1488 1793 0.999406 CCGCTGTATTCTGTTCACCG 59.001 55.000 0.00 0.00 0.00 4.94
1496 1801 6.674760 GCTGTATTCTGTTCACCGGTTAATTC 60.675 42.308 2.97 0.00 0.00 2.17
1502 1809 5.929992 TCTGTTCACCGGTTAATTCTAGTTG 59.070 40.000 2.97 0.00 0.00 3.16
1547 1854 8.930760 AGAGCATTCTATTTATTCATACGCTTC 58.069 33.333 0.00 0.00 0.00 3.86
1605 1915 5.750352 AAAAATCCCAACATCTCTTGCAT 57.250 34.783 0.00 0.00 0.00 3.96
1617 1927 7.317842 ACATCTCTTGCATTCTCTGTTTATG 57.682 36.000 0.00 0.00 0.00 1.90
1625 1935 7.994425 TGCATTCTCTGTTTATGTTAGGAAA 57.006 32.000 0.00 0.00 0.00 3.13
1667 1977 8.660295 TTTTTCATCTACTACTCCCTCAGTAA 57.340 34.615 0.00 0.00 37.13 2.24
1668 1978 8.660295 TTTTCATCTACTACTCCCTCAGTAAA 57.340 34.615 0.00 0.00 37.13 2.01
1669 1979 7.883391 TTCATCTACTACTCCCTCAGTAAAG 57.117 40.000 0.00 0.00 37.13 1.85
1670 1980 7.209340 TCATCTACTACTCCCTCAGTAAAGA 57.791 40.000 0.00 0.00 37.13 2.52
1671 1981 7.640313 TCATCTACTACTCCCTCAGTAAAGAA 58.360 38.462 0.00 0.00 37.13 2.52
1672 1982 8.282982 TCATCTACTACTCCCTCAGTAAAGAAT 58.717 37.037 0.00 0.00 37.13 2.40
1673 1983 9.575868 CATCTACTACTCCCTCAGTAAAGAATA 57.424 37.037 0.00 0.00 37.13 1.75
1674 1984 9.802039 ATCTACTACTCCCTCAGTAAAGAATAG 57.198 37.037 0.00 0.00 37.13 1.73
1675 1985 8.780003 TCTACTACTCCCTCAGTAAAGAATAGT 58.220 37.037 0.00 0.00 37.13 2.12
1676 1986 7.648039 ACTACTCCCTCAGTAAAGAATAGTG 57.352 40.000 0.00 0.00 37.13 2.74
1677 1987 7.411808 ACTACTCCCTCAGTAAAGAATAGTGA 58.588 38.462 0.00 0.00 37.13 3.41
1678 1988 8.062536 ACTACTCCCTCAGTAAAGAATAGTGAT 58.937 37.037 0.00 0.00 37.13 3.06
1679 1989 7.354751 ACTCCCTCAGTAAAGAATAGTGATC 57.645 40.000 0.00 0.00 31.37 2.92
1680 1990 7.129425 ACTCCCTCAGTAAAGAATAGTGATCT 58.871 38.462 0.00 0.00 31.37 2.75
1681 1991 8.282982 ACTCCCTCAGTAAAGAATAGTGATCTA 58.717 37.037 0.00 0.00 31.37 1.98
1682 1992 9.137459 CTCCCTCAGTAAAGAATAGTGATCTAA 57.863 37.037 0.00 0.00 0.00 2.10
1683 1993 9.488762 TCCCTCAGTAAAGAATAGTGATCTAAA 57.511 33.333 0.00 0.00 0.00 1.85
1684 1994 9.535878 CCCTCAGTAAAGAATAGTGATCTAAAC 57.464 37.037 0.00 0.00 0.00 2.01
1685 1995 9.239002 CCTCAGTAAAGAATAGTGATCTAAACG 57.761 37.037 0.00 0.00 0.00 3.60
1686 1996 8.630278 TCAGTAAAGAATAGTGATCTAAACGC 57.370 34.615 0.00 0.00 0.00 4.84
1687 1997 8.467598 TCAGTAAAGAATAGTGATCTAAACGCT 58.532 33.333 0.00 0.00 0.00 5.07
1688 1998 8.747666 CAGTAAAGAATAGTGATCTAAACGCTC 58.252 37.037 0.00 0.00 0.00 5.03
1689 1999 8.688151 AGTAAAGAATAGTGATCTAAACGCTCT 58.312 33.333 0.00 0.00 0.00 4.09
1690 2000 9.303537 GTAAAGAATAGTGATCTAAACGCTCTT 57.696 33.333 0.00 0.00 0.00 2.85
1704 2014 9.241317 TCTAAACGCTCTTATATTTCTTTACGG 57.759 33.333 0.00 0.00 0.00 4.02
1705 2015 9.241317 CTAAACGCTCTTATATTTCTTTACGGA 57.759 33.333 0.00 0.00 0.00 4.69
1706 2016 7.695869 AACGCTCTTATATTTCTTTACGGAG 57.304 36.000 0.00 0.00 0.00 4.63
1707 2017 6.214399 ACGCTCTTATATTTCTTTACGGAGG 58.786 40.000 0.00 0.00 0.00 4.30
1708 2018 5.634020 CGCTCTTATATTTCTTTACGGAGGG 59.366 44.000 0.00 0.00 0.00 4.30
1709 2019 6.516194 CGCTCTTATATTTCTTTACGGAGGGA 60.516 42.308 0.00 0.00 34.63 4.20
1710 2020 6.869388 GCTCTTATATTTCTTTACGGAGGGAG 59.131 42.308 0.00 0.00 0.00 4.30
1711 2021 7.471679 GCTCTTATATTTCTTTACGGAGGGAGT 60.472 40.741 0.00 0.00 0.00 3.85
1712 2022 9.075678 CTCTTATATTTCTTTACGGAGGGAGTA 57.924 37.037 0.00 0.00 0.00 2.59
1784 2094 8.826710 TCTACTATGTTTGATTTTATCCGCTTG 58.173 33.333 0.00 0.00 0.00 4.01
1785 2095 7.391148 ACTATGTTTGATTTTATCCGCTTGT 57.609 32.000 0.00 0.00 0.00 3.16
1787 2097 5.054390 TGTTTGATTTTATCCGCTTGTCC 57.946 39.130 0.00 0.00 0.00 4.02
1878 2191 4.639078 TGGAGGAGATGATGTTTGACAA 57.361 40.909 0.00 0.00 0.00 3.18
1947 2260 6.327154 GGGAGGTAATTATTTGTTGTTTCCG 58.673 40.000 0.00 0.00 0.00 4.30
1966 2279 0.447801 GTCATGTTTAGCACCAGCCG 59.552 55.000 0.00 0.00 43.56 5.52
1982 2295 3.364277 CCGTAGGCCTTGAACTAGC 57.636 57.895 12.58 0.00 46.14 3.42
1983 2296 0.179081 CCGTAGGCCTTGAACTAGCC 60.179 60.000 12.58 0.00 46.14 3.93
1987 2300 3.672066 GGCCTTGAACTAGCCCTTT 57.328 52.632 0.00 0.00 41.00 3.11
1988 2301 1.924731 GGCCTTGAACTAGCCCTTTT 58.075 50.000 0.00 0.00 41.00 2.27
1989 2302 1.546029 GGCCTTGAACTAGCCCTTTTG 59.454 52.381 0.00 0.00 41.00 2.44
1990 2303 1.067565 GCCTTGAACTAGCCCTTTTGC 60.068 52.381 0.00 0.00 0.00 3.68
1991 2304 2.238521 CCTTGAACTAGCCCTTTTGCA 58.761 47.619 0.00 0.00 0.00 4.08
1992 2305 2.827921 CCTTGAACTAGCCCTTTTGCAT 59.172 45.455 0.00 0.00 0.00 3.96
1993 2306 3.259123 CCTTGAACTAGCCCTTTTGCATT 59.741 43.478 0.00 0.00 0.00 3.56
1994 2307 4.262592 CCTTGAACTAGCCCTTTTGCATTT 60.263 41.667 0.00 0.00 0.00 2.32
1995 2308 4.519540 TGAACTAGCCCTTTTGCATTTC 57.480 40.909 0.00 0.00 0.00 2.17
1996 2309 4.151883 TGAACTAGCCCTTTTGCATTTCT 58.848 39.130 0.00 0.00 0.00 2.52
1997 2310 5.321102 TGAACTAGCCCTTTTGCATTTCTA 58.679 37.500 0.00 0.00 0.00 2.10
1998 2311 5.772672 TGAACTAGCCCTTTTGCATTTCTAA 59.227 36.000 0.00 0.00 0.00 2.10
1999 2312 6.437162 TGAACTAGCCCTTTTGCATTTCTAAT 59.563 34.615 0.00 0.00 0.00 1.73
2000 2313 7.613801 TGAACTAGCCCTTTTGCATTTCTAATA 59.386 33.333 0.00 0.00 0.00 0.98
2001 2314 8.539117 AACTAGCCCTTTTGCATTTCTAATAT 57.461 30.769 0.00 0.00 0.00 1.28
2002 2315 7.945134 ACTAGCCCTTTTGCATTTCTAATATG 58.055 34.615 0.00 0.00 0.00 1.78
2003 2316 6.796785 AGCCCTTTTGCATTTCTAATATGT 57.203 33.333 0.00 0.00 0.00 2.29
2004 2317 7.896383 AGCCCTTTTGCATTTCTAATATGTA 57.104 32.000 0.00 0.00 0.00 2.29
2005 2318 7.716612 AGCCCTTTTGCATTTCTAATATGTAC 58.283 34.615 0.00 0.00 0.00 2.90
2006 2319 6.923508 GCCCTTTTGCATTTCTAATATGTACC 59.076 38.462 0.00 0.00 0.00 3.34
2007 2320 7.201911 GCCCTTTTGCATTTCTAATATGTACCT 60.202 37.037 0.00 0.00 0.00 3.08
2008 2321 8.695456 CCCTTTTGCATTTCTAATATGTACCTT 58.305 33.333 0.00 0.00 0.00 3.50
2050 2363 3.536570 GAAAGTAGGCTGGGACTTGATC 58.463 50.000 0.00 0.00 36.05 2.92
2054 2367 1.127343 AGGCTGGGACTTGATCTAGC 58.873 55.000 3.93 0.00 37.01 3.42
2084 2401 4.702131 GGAGTAAATTTGGACTGACAGCAT 59.298 41.667 1.25 0.00 0.00 3.79
2103 2420 1.080638 TCTGGCCCTTGGTAACCATT 58.919 50.000 0.00 0.00 31.53 3.16
2109 2426 1.341976 CCCTTGGTAACCATTGGGGAG 60.342 57.143 7.78 0.00 41.09 4.30
2124 2441 1.063942 GGGGAGGTTTAGGACAATGGG 60.064 57.143 0.00 0.00 0.00 4.00
2148 2465 1.742768 CCTATGTGGCGTCTCTCCC 59.257 63.158 0.00 0.00 0.00 4.30
2223 2544 3.012518 CAGTACAGAGGCCATTTGAAGG 58.987 50.000 5.01 0.00 0.00 3.46
2321 2642 0.517316 GGCTGCTGTTTACTGAACCG 59.483 55.000 0.00 0.00 37.45 4.44
2353 2674 3.075134 AGCTCCCACTCCATTTTCTCTTT 59.925 43.478 0.00 0.00 0.00 2.52
2474 2800 3.125316 GCGACACAACAGGGAAGAAATAG 59.875 47.826 0.00 0.00 0.00 1.73
2508 2834 2.040544 CGGCAAGCTTTCCCGACAT 61.041 57.895 24.12 0.00 44.55 3.06
2531 2857 4.131649 TCACAATATACCTTGGTGACCG 57.868 45.455 2.03 0.00 0.00 4.79
2843 3268 1.271543 TGGAACTCCAATGGCAGACAG 60.272 52.381 0.00 0.00 44.35 3.51
2876 3301 7.831691 TGTTGATGAGGACTTGGATTTTAAA 57.168 32.000 0.00 0.00 0.00 1.52
2878 3303 8.869109 TGTTGATGAGGACTTGGATTTTAAAAT 58.131 29.630 13.24 13.24 0.00 1.82
2886 3311 9.764363 AGGACTTGGATTTTAAAATTCTTTGAC 57.236 29.630 18.06 9.42 0.00 3.18
2935 3360 3.482156 AATGAATATCTGAGGCAGCGT 57.518 42.857 0.00 0.00 0.00 5.07
2948 3373 4.301505 AGCGTATGTTGCTGTGGG 57.698 55.556 0.00 0.00 42.14 4.61
2949 3374 1.374947 AGCGTATGTTGCTGTGGGT 59.625 52.632 0.00 0.00 42.14 4.51
2950 3375 0.250727 AGCGTATGTTGCTGTGGGTT 60.251 50.000 0.00 0.00 42.14 4.11
2953 3378 2.226912 GCGTATGTTGCTGTGGGTTAAA 59.773 45.455 0.00 0.00 0.00 1.52
3021 3446 5.416271 TTCACCTATTGTACTTGAGGGTC 57.584 43.478 10.88 0.00 33.02 4.46
3082 3507 2.351276 GCGGTGATGGACCAACCT 59.649 61.111 12.58 0.00 46.55 3.50
3092 3517 1.559065 GGACCAACCTTCCCCATCGA 61.559 60.000 0.00 0.00 35.41 3.59
3316 3752 3.304559 CGATTGAGAAGCTAAGGAACACG 59.695 47.826 0.00 0.00 0.00 4.49
3327 3763 2.127609 GAACACGCGTGCTCAAGC 60.128 61.111 37.35 16.97 42.50 4.01
3354 3790 3.826729 GCTGTTTCCCAAAGTAGAATGGT 59.173 43.478 0.00 0.00 34.79 3.55
3355 3791 5.007682 GCTGTTTCCCAAAGTAGAATGGTA 58.992 41.667 0.00 0.00 34.79 3.25
3356 3792 5.106277 GCTGTTTCCCAAAGTAGAATGGTAC 60.106 44.000 0.00 0.00 34.79 3.34
3357 3793 5.318630 TGTTTCCCAAAGTAGAATGGTACC 58.681 41.667 4.43 4.43 34.79 3.34
3358 3794 5.073965 TGTTTCCCAAAGTAGAATGGTACCT 59.926 40.000 14.36 0.00 34.79 3.08
3359 3795 6.272792 TGTTTCCCAAAGTAGAATGGTACCTA 59.727 38.462 14.36 0.00 34.79 3.08
3360 3796 7.037153 TGTTTCCCAAAGTAGAATGGTACCTAT 60.037 37.037 14.36 1.01 34.79 2.57
3361 3797 7.519347 TTCCCAAAGTAGAATGGTACCTATT 57.481 36.000 14.36 11.02 34.79 1.73
3362 3798 7.519347 TCCCAAAGTAGAATGGTACCTATTT 57.481 36.000 14.36 4.23 34.79 1.40
3363 3799 7.343357 TCCCAAAGTAGAATGGTACCTATTTG 58.657 38.462 14.36 12.12 34.79 2.32
3364 3800 7.037153 TCCCAAAGTAGAATGGTACCTATTTGT 60.037 37.037 14.36 5.67 34.79 2.83
3365 3801 8.269317 CCCAAAGTAGAATGGTACCTATTTGTA 58.731 37.037 14.36 4.73 34.79 2.41
3366 3802 9.847224 CCAAAGTAGAATGGTACCTATTTGTAT 57.153 33.333 14.36 0.00 31.84 2.29
3368 3804 8.904099 AAGTAGAATGGTACCTATTTGTATGC 57.096 34.615 14.36 0.00 0.00 3.14
3369 3805 7.450903 AGTAGAATGGTACCTATTTGTATGCC 58.549 38.462 14.36 0.00 0.00 4.40
3370 3806 6.260700 AGAATGGTACCTATTTGTATGCCA 57.739 37.500 14.36 0.00 0.00 4.92
3371 3807 6.668645 AGAATGGTACCTATTTGTATGCCAA 58.331 36.000 14.36 0.00 0.00 4.52
3372 3808 7.297614 AGAATGGTACCTATTTGTATGCCAAT 58.702 34.615 14.36 0.00 31.81 3.16
3373 3809 7.784550 AGAATGGTACCTATTTGTATGCCAATT 59.215 33.333 14.36 0.00 31.81 2.32
3374 3810 7.912778 ATGGTACCTATTTGTATGCCAATTT 57.087 32.000 14.36 0.00 31.81 1.82
3375 3811 7.726033 TGGTACCTATTTGTATGCCAATTTT 57.274 32.000 14.36 0.00 31.81 1.82
3376 3812 8.824756 TGGTACCTATTTGTATGCCAATTTTA 57.175 30.769 14.36 0.00 31.81 1.52
3377 3813 9.427821 TGGTACCTATTTGTATGCCAATTTTAT 57.572 29.630 14.36 0.00 31.81 1.40
3381 3817 9.598517 ACCTATTTGTATGCCAATTTTATTGTG 57.401 29.630 0.00 0.00 31.81 3.33
3382 3818 9.814899 CCTATTTGTATGCCAATTTTATTGTGA 57.185 29.630 0.00 0.00 31.81 3.58
3485 3921 8.955061 ATTCAACAATGTTCTATCAAAGTTCG 57.045 30.769 0.00 0.00 0.00 3.95
3597 4033 9.941325 ATAATTAGAGAATGCTAGATTCAGTGG 57.059 33.333 13.77 0.00 0.00 4.00
3626 4062 4.017958 TGCTTTACCATGGGGATCTTAACA 60.018 41.667 18.09 0.00 38.05 2.41
3709 4145 3.188460 CCATGTATATACGCTTGTTGCCC 59.812 47.826 8.33 0.00 38.78 5.36
3841 4277 4.843728 TGTGTATTTCTCCCCTCATTGTC 58.156 43.478 0.00 0.00 0.00 3.18
3958 4394 2.959030 TGGCGAGATAATAGTCAGCAGT 59.041 45.455 0.00 0.00 0.00 4.40
4046 4484 9.113876 GAACAACTTCTAATTTGTTTCGGTATG 57.886 33.333 11.10 0.00 44.16 2.39
4071 4509 1.768684 AACTTCGAGGGCAGCCTTCA 61.769 55.000 22.72 7.85 29.47 3.02
4206 4686 2.965805 TGGATGAGCCAAAGCCTTG 58.034 52.632 0.00 0.00 45.87 3.61
4228 4708 2.124403 CCTGCCCCTGATGCTGAC 60.124 66.667 0.00 0.00 0.00 3.51
4329 4809 0.955919 CTGAGAGGCCGTTTTGGTCC 60.956 60.000 0.00 0.00 46.71 4.46
4378 4858 3.365265 GGCAACCACTTCCTGCCG 61.365 66.667 0.00 0.00 45.72 5.69
4415 4895 4.159693 GGTCTTGGAGGTTTTGAAGTGTTT 59.840 41.667 0.00 0.00 0.00 2.83
4446 4926 6.403200 CCACCTGTATTACTTGGATTTTGTCG 60.403 42.308 11.51 0.00 0.00 4.35
4489 4969 6.606768 CATGTTTTCCTTGCTTACTCTCTTC 58.393 40.000 0.00 0.00 0.00 2.87
4547 5028 9.551734 GTAAACGGGTCTAAAATATCCTTATGT 57.448 33.333 0.00 0.00 0.00 2.29
4550 5031 9.774413 AACGGGTCTAAAATATCCTTATGTTAG 57.226 33.333 0.00 0.00 37.12 2.34
4552 5033 9.204570 CGGGTCTAAAATATCCTTATGTTAGTG 57.795 37.037 3.90 0.00 37.11 2.74
4553 5034 9.000486 GGGTCTAAAATATCCTTATGTTAGTGC 58.000 37.037 3.90 0.00 37.11 4.40
4554 5035 9.000486 GGTCTAAAATATCCTTATGTTAGTGCC 58.000 37.037 3.90 4.45 37.11 5.01
4555 5036 9.000486 GTCTAAAATATCCTTATGTTAGTGCCC 58.000 37.037 3.90 0.00 37.11 5.36
4556 5037 6.877611 AAAATATCCTTATGTTAGTGCCCG 57.122 37.500 0.00 0.00 0.00 6.13
4557 5038 2.256117 ATCCTTATGTTAGTGCCCGC 57.744 50.000 0.00 0.00 0.00 6.13
4670 5231 5.998454 AATTCTGTGACTATAGCATGCAC 57.002 39.130 21.98 7.83 0.00 4.57
4671 5232 4.470334 TTCTGTGACTATAGCATGCACA 57.530 40.909 21.98 12.32 37.81 4.57
4672 5233 4.677673 TCTGTGACTATAGCATGCACAT 57.322 40.909 21.98 14.80 38.61 3.21
4673 5234 4.374399 TCTGTGACTATAGCATGCACATG 58.626 43.478 21.98 9.70 38.61 3.21
4736 5590 5.407407 AGAAATCACGTGGTAACTCTCAT 57.593 39.130 17.00 0.00 37.61 2.90
4806 5661 9.537192 CAATCTTTGCAATATCAAATACCACAT 57.463 29.630 0.00 0.00 35.64 3.21
4812 5667 8.382030 TGCAATATCAAATACCACATGACTAG 57.618 34.615 0.00 0.00 0.00 2.57
4822 5693 3.291584 CCACATGACTAGAGTAGCTGGA 58.708 50.000 0.00 0.00 0.00 3.86
4864 5735 9.495572 CAGAAGTGAGGAAATTCTACTTTTACT 57.504 33.333 10.34 0.00 32.16 2.24
4886 5757 6.597562 ACTCAGTCAACTAACCAACCAAATA 58.402 36.000 0.00 0.00 0.00 1.40
4893 5764 9.567848 GTCAACTAACCAACCAAATATAACATG 57.432 33.333 0.00 0.00 0.00 3.21
4895 5766 7.710676 ACTAACCAACCAAATATAACATGCA 57.289 32.000 0.00 0.00 0.00 3.96
4896 5767 8.305046 ACTAACCAACCAAATATAACATGCAT 57.695 30.769 0.00 0.00 0.00 3.96
4897 5768 8.757877 ACTAACCAACCAAATATAACATGCATT 58.242 29.630 0.00 0.00 0.00 3.56
4899 5770 7.180322 ACCAACCAAATATAACATGCATTGA 57.820 32.000 0.00 0.00 0.00 2.57
4901 5772 7.927629 ACCAACCAAATATAACATGCATTGATC 59.072 33.333 0.00 0.00 0.00 2.92
4902 5773 7.115236 CCAACCAAATATAACATGCATTGATCG 59.885 37.037 0.00 0.00 0.00 3.69
4903 5774 7.275888 ACCAAATATAACATGCATTGATCGT 57.724 32.000 0.00 0.00 0.00 3.73
4904 5775 7.715657 ACCAAATATAACATGCATTGATCGTT 58.284 30.769 0.00 0.00 0.00 3.85
4905 5776 8.196771 ACCAAATATAACATGCATTGATCGTTT 58.803 29.630 0.00 0.00 0.00 3.60
4907 5778 9.454585 CAAATATAACATGCATTGATCGTTTCT 57.545 29.630 0.00 0.00 0.00 2.52
4910 5781 5.375417 AACATGCATTGATCGTTTCTTCA 57.625 34.783 0.00 0.00 0.00 3.02
4912 5783 4.142534 ACATGCATTGATCGTTTCTTCAGG 60.143 41.667 0.00 0.00 0.00 3.86
4913 5784 3.673902 TGCATTGATCGTTTCTTCAGGA 58.326 40.909 0.00 0.00 0.00 3.86
4914 5785 4.264253 TGCATTGATCGTTTCTTCAGGAT 58.736 39.130 0.00 0.00 0.00 3.24
4915 5786 4.701651 TGCATTGATCGTTTCTTCAGGATT 59.298 37.500 0.00 0.00 0.00 3.01
4916 5787 5.163723 TGCATTGATCGTTTCTTCAGGATTC 60.164 40.000 0.00 0.00 0.00 2.52
4917 5788 5.065731 GCATTGATCGTTTCTTCAGGATTCT 59.934 40.000 0.00 0.00 0.00 2.40
4918 5789 6.404074 GCATTGATCGTTTCTTCAGGATTCTT 60.404 38.462 0.00 0.00 0.00 2.52
4919 5790 7.533426 CATTGATCGTTTCTTCAGGATTCTTT 58.467 34.615 0.00 0.00 0.00 2.52
4921 5792 4.749245 TCGTTTCTTCAGGATTCTTTGC 57.251 40.909 0.00 0.00 0.00 3.68
4922 5793 4.133820 TCGTTTCTTCAGGATTCTTTGCA 58.866 39.130 0.00 0.00 0.00 4.08
4923 5794 4.578516 TCGTTTCTTCAGGATTCTTTGCAA 59.421 37.500 0.00 0.00 0.00 4.08
4925 5796 5.506317 CGTTTCTTCAGGATTCTTTGCAAGT 60.506 40.000 0.00 0.00 0.00 3.16
4927 5798 7.573843 CGTTTCTTCAGGATTCTTTGCAAGTAT 60.574 37.037 0.00 0.00 0.00 2.12
4928 5799 8.730680 GTTTCTTCAGGATTCTTTGCAAGTATA 58.269 33.333 0.00 0.00 0.00 1.47
4931 5802 8.321353 TCTTCAGGATTCTTTGCAAGTATAGAA 58.679 33.333 12.43 12.43 0.00 2.10
4934 5805 6.313905 CAGGATTCTTTGCAAGTATAGAACGT 59.686 38.462 12.33 6.89 30.17 3.99
4935 5806 7.491372 CAGGATTCTTTGCAAGTATAGAACGTA 59.509 37.037 12.33 0.00 30.17 3.57
4936 5807 8.204836 AGGATTCTTTGCAAGTATAGAACGTAT 58.795 33.333 12.33 0.00 30.17 3.06
4937 5808 8.827677 GGATTCTTTGCAAGTATAGAACGTATT 58.172 33.333 12.33 0.00 30.17 1.89
4976 5847 9.057089 GTATTACCAATCCTTTTACCATCTCTG 57.943 37.037 0.00 0.00 0.00 3.35
4985 5856 6.070251 TCCTTTTACCATCTCTGCTTGATGTA 60.070 38.462 11.20 4.27 39.54 2.29
4986 5857 6.259608 CCTTTTACCATCTCTGCTTGATGTAG 59.740 42.308 11.20 2.93 39.54 2.74
4987 5858 5.939764 TTACCATCTCTGCTTGATGTAGT 57.060 39.130 11.20 7.08 39.54 2.73
4989 5860 5.939764 ACCATCTCTGCTTGATGTAGTAA 57.060 39.130 11.20 0.00 39.54 2.24
5022 6220 0.834687 TTTCGCACTAGGACCCCAGT 60.835 55.000 0.00 0.00 0.00 4.00
5092 7116 2.770164 TCTTTGGGTAGAGCTCAAGC 57.230 50.000 17.77 5.06 39.02 4.01
5100 7124 2.615869 GTAGAGCTCAAGCAACAGAGG 58.384 52.381 17.77 0.00 45.16 3.69
5126 7150 3.300239 TCCATCCAACATCATGATGCA 57.700 42.857 31.17 15.69 42.39 3.96
5169 7193 1.028905 GAGAGAGATGGACGGGTCTG 58.971 60.000 0.00 0.00 0.00 3.51
5172 7196 0.263172 AGAGATGGACGGGTCTGGAT 59.737 55.000 0.00 0.00 0.00 3.41
5173 7197 0.390860 GAGATGGACGGGTCTGGATG 59.609 60.000 0.00 0.00 0.00 3.51
5174 7198 0.325671 AGATGGACGGGTCTGGATGT 60.326 55.000 0.00 0.00 0.00 3.06
5175 7199 1.063190 AGATGGACGGGTCTGGATGTA 60.063 52.381 0.00 0.00 0.00 2.29
5176 7200 1.068741 GATGGACGGGTCTGGATGTAC 59.931 57.143 0.00 0.00 0.00 2.90
5177 7201 1.317431 TGGACGGGTCTGGATGTACG 61.317 60.000 0.00 0.00 0.00 3.67
5178 7202 1.318158 GGACGGGTCTGGATGTACGT 61.318 60.000 0.00 0.00 37.26 3.57
5181 7205 1.474077 ACGGGTCTGGATGTACGTTAC 59.526 52.381 0.00 0.00 0.00 2.50
5209 7238 1.135972 GCATCAACAGTGCAGGTTACG 60.136 52.381 3.56 0.00 42.08 3.18
5225 7254 0.896940 TACGACCTCCTTCCAGCGTT 60.897 55.000 0.00 0.00 33.69 4.84
5266 7295 2.755655 TCCTTCCTGATCGACTTGACTC 59.244 50.000 0.00 0.00 0.00 3.36
5270 7299 2.095212 TCCTGATCGACTTGACTCGTTG 60.095 50.000 0.00 0.00 35.10 4.10
5271 7300 1.651138 CTGATCGACTTGACTCGTTGC 59.349 52.381 0.00 0.00 35.10 4.17
5272 7301 1.269723 TGATCGACTTGACTCGTTGCT 59.730 47.619 0.00 0.00 35.10 3.91
5273 7302 2.288213 TGATCGACTTGACTCGTTGCTT 60.288 45.455 0.00 0.00 35.10 3.91
5274 7303 1.767289 TCGACTTGACTCGTTGCTTC 58.233 50.000 0.00 0.00 35.10 3.86
5275 7304 0.431233 CGACTTGACTCGTTGCTTCG 59.569 55.000 0.00 0.00 0.00 3.79
5276 7305 0.161870 GACTTGACTCGTTGCTTCGC 59.838 55.000 0.00 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 98 6.765915 AGCCTAGACTCAATGGAAAATTTC 57.234 37.500 0.00 0.00 0.00 2.17
99 100 8.829373 AATTAGCCTAGACTCAATGGAAAATT 57.171 30.769 0.00 0.00 0.00 1.82
100 101 8.829373 AAATTAGCCTAGACTCAATGGAAAAT 57.171 30.769 0.00 0.00 0.00 1.82
129 134 4.282195 ACCAACCATTCGCATTTTAAAGGA 59.718 37.500 0.00 0.00 0.00 3.36
135 140 2.632512 AGGAACCAACCATTCGCATTTT 59.367 40.909 0.00 0.00 0.00 1.82
141 146 5.909477 TGTAGTATAGGAACCAACCATTCG 58.091 41.667 0.00 0.00 0.00 3.34
159 164 8.921353 ATTCTCGTTCCTATGTAGTATGTAGT 57.079 34.615 0.00 0.00 0.00 2.73
160 165 9.828852 GAATTCTCGTTCCTATGTAGTATGTAG 57.171 37.037 0.00 0.00 0.00 2.74
161 166 9.346005 TGAATTCTCGTTCCTATGTAGTATGTA 57.654 33.333 7.05 0.00 0.00 2.29
162 167 8.234136 TGAATTCTCGTTCCTATGTAGTATGT 57.766 34.615 7.05 0.00 0.00 2.29
163 168 9.698309 AATGAATTCTCGTTCCTATGTAGTATG 57.302 33.333 7.05 0.00 0.00 2.39
178 183 6.494893 TTGGTTTGTAGGAATGAATTCTCG 57.505 37.500 7.05 0.00 37.00 4.04
179 184 7.276438 GCATTTGGTTTGTAGGAATGAATTCTC 59.724 37.037 7.05 0.00 37.00 2.87
203 208 6.100279 AGGAATTCTACAATATGAGTGGAGCA 59.900 38.462 5.23 0.00 0.00 4.26
204 209 6.529220 AGGAATTCTACAATATGAGTGGAGC 58.471 40.000 5.23 0.00 0.00 4.70
227 255 3.636153 AGGCCTCCTTTAGCTTTGTAG 57.364 47.619 0.00 0.00 0.00 2.74
231 259 4.929146 TTCTTAGGCCTCCTTTAGCTTT 57.071 40.909 9.68 0.00 34.61 3.51
236 264 6.183361 GGAATGAGATTCTTAGGCCTCCTTTA 60.183 42.308 9.68 0.00 39.24 1.85
245 273 8.572855 AGTTTTGAAGGAATGAGATTCTTAGG 57.427 34.615 0.00 0.00 39.24 2.69
247 275 8.386264 AGGAGTTTTGAAGGAATGAGATTCTTA 58.614 33.333 0.00 0.00 39.24 2.10
248 276 7.237255 AGGAGTTTTGAAGGAATGAGATTCTT 58.763 34.615 0.00 0.00 39.24 2.52
254 282 7.510549 TTTGTAGGAGTTTTGAAGGAATGAG 57.489 36.000 0.00 0.00 0.00 2.90
258 286 9.416284 AGTATTTTTGTAGGAGTTTTGAAGGAA 57.584 29.630 0.00 0.00 0.00 3.36
281 309 9.919416 TTGGATCATAGGATTTGATTCAAAGTA 57.081 29.630 16.34 8.87 43.06 2.24
282 310 8.827832 TTGGATCATAGGATTTGATTCAAAGT 57.172 30.769 16.34 7.18 43.06 2.66
291 319 6.415206 AAGCCATTTGGATCATAGGATTTG 57.585 37.500 0.00 0.00 37.39 2.32
294 322 4.763793 CGAAAGCCATTTGGATCATAGGAT 59.236 41.667 0.00 0.00 37.39 3.24
300 328 3.054728 TCCTACGAAAGCCATTTGGATCA 60.055 43.478 0.00 0.00 37.39 2.92
345 374 6.708285 CCTATTTGGGTTGTAGACTTGTAGT 58.292 40.000 0.00 0.00 0.00 2.73
346 375 5.585047 GCCTATTTGGGTTGTAGACTTGTAG 59.415 44.000 0.00 0.00 36.00 2.74
347 376 5.493809 GCCTATTTGGGTTGTAGACTTGTA 58.506 41.667 0.00 0.00 36.00 2.41
348 377 4.332828 GCCTATTTGGGTTGTAGACTTGT 58.667 43.478 0.00 0.00 36.00 3.16
349 378 3.694566 GGCCTATTTGGGTTGTAGACTTG 59.305 47.826 0.00 0.00 36.00 3.16
350 379 3.308904 GGGCCTATTTGGGTTGTAGACTT 60.309 47.826 0.84 0.00 36.00 3.01
351 380 2.241430 GGGCCTATTTGGGTTGTAGACT 59.759 50.000 0.84 0.00 36.00 3.24
352 381 2.651455 GGGCCTATTTGGGTTGTAGAC 58.349 52.381 0.84 0.00 36.00 2.59
353 382 1.210967 CGGGCCTATTTGGGTTGTAGA 59.789 52.381 0.84 0.00 36.00 2.59
365 394 2.032620 CACTCTTCACTACGGGCCTAT 58.967 52.381 0.84 0.00 0.00 2.57
373 402 3.381949 ACAACTTCGCACTCTTCACTAC 58.618 45.455 0.00 0.00 0.00 2.73
380 409 1.341531 AGCACTACAACTTCGCACTCT 59.658 47.619 0.00 0.00 0.00 3.24
601 638 8.832521 TGACGTACAAGAAAAGACAAATATGTT 58.167 29.630 0.00 0.00 40.74 2.71
607 644 4.626604 ACGTGACGTACAAGAAAAGACAAA 59.373 37.500 9.69 0.00 38.73 2.83
609 646 3.548668 CACGTGACGTACAAGAAAAGACA 59.451 43.478 11.43 0.00 38.32 3.41
610 647 3.549070 ACACGTGACGTACAAGAAAAGAC 59.451 43.478 25.01 0.00 38.32 3.01
611 648 3.548668 CACACGTGACGTACAAGAAAAGA 59.451 43.478 25.01 0.00 38.32 2.52
612 649 3.548668 TCACACGTGACGTACAAGAAAAG 59.451 43.478 25.01 0.00 38.32 2.27
613 650 3.509740 TCACACGTGACGTACAAGAAAA 58.490 40.909 25.01 0.00 38.32 2.29
614 651 3.148026 TCACACGTGACGTACAAGAAA 57.852 42.857 25.01 0.00 38.32 2.52
615 652 2.847959 TCACACGTGACGTACAAGAA 57.152 45.000 25.01 0.00 38.32 2.52
623 788 3.978855 TCATTCTACTTTCACACGTGACG 59.021 43.478 25.01 13.01 39.66 4.35
737 933 2.855963 CTGAGCCAAAATTAGCAATGCG 59.144 45.455 0.00 0.00 0.00 4.73
738 934 3.615496 CACTGAGCCAAAATTAGCAATGC 59.385 43.478 0.00 0.00 0.00 3.56
739 935 5.063180 TCACTGAGCCAAAATTAGCAATG 57.937 39.130 0.00 0.00 0.00 2.82
740 936 4.159135 CCTCACTGAGCCAAAATTAGCAAT 59.841 41.667 0.00 0.00 0.00 3.56
780 980 1.057851 TTGGGAGTTATAGGCCGGGG 61.058 60.000 2.18 0.00 0.00 5.73
797 997 4.464951 GGGGTTAAGATTAGGGTTTGGTTG 59.535 45.833 0.00 0.00 0.00 3.77
798 998 4.511476 GGGGGTTAAGATTAGGGTTTGGTT 60.511 45.833 0.00 0.00 0.00 3.67
816 1016 3.179685 GACTGAAAACCTAGTAGGGGGT 58.820 50.000 20.54 8.93 40.58 4.95
934 1151 2.981350 CGTTTGGGTTGGACGGGG 60.981 66.667 0.00 0.00 33.45 5.73
947 1164 1.040339 TGTGAGCTTTTGGGGCGTTT 61.040 50.000 0.00 0.00 34.52 3.60
956 1173 3.566351 AGCTAGGGTTTTGTGAGCTTTT 58.434 40.909 0.00 0.00 40.55 2.27
961 1178 4.216472 GGAAGAAAGCTAGGGTTTTGTGAG 59.784 45.833 0.00 0.00 33.25 3.51
962 1179 4.141251 AGGAAGAAAGCTAGGGTTTTGTGA 60.141 41.667 0.00 0.00 33.25 3.58
966 1183 7.067421 AGTTTTAGGAAGAAAGCTAGGGTTTT 58.933 34.615 0.00 0.00 33.25 2.43
977 1194 3.408634 CTGCGGGAGTTTTAGGAAGAAA 58.591 45.455 0.00 0.00 0.00 2.52
987 1208 2.034879 CGACATGCTGCGGGAGTTT 61.035 57.895 0.00 0.00 0.00 2.66
1231 1452 1.841450 GAGGACCTAAGACGCAATCG 58.159 55.000 0.00 0.00 42.43 3.34
1250 1473 1.002251 GGAGACTGGAGCTATTCGTCG 60.002 57.143 0.00 0.00 0.00 5.12
1251 1474 2.025155 TGGAGACTGGAGCTATTCGTC 58.975 52.381 0.00 0.00 0.00 4.20
1252 1475 2.028130 CTGGAGACTGGAGCTATTCGT 58.972 52.381 0.00 0.00 0.00 3.85
1258 1481 0.033208 CCTCTCTGGAGACTGGAGCT 60.033 60.000 0.00 0.00 41.86 4.09
1352 1655 7.425309 CGTAACTAAATTGTTTCACCGATCATG 59.575 37.037 0.00 0.00 0.00 3.07
1372 1675 8.698210 TGGAGTACAATATATCAAACCGTAACT 58.302 33.333 0.00 0.00 0.00 2.24
1376 1679 5.989777 GCTGGAGTACAATATATCAAACCGT 59.010 40.000 0.00 0.00 0.00 4.83
1377 1680 6.223852 AGCTGGAGTACAATATATCAAACCG 58.776 40.000 0.00 0.00 0.00 4.44
1471 1774 2.094762 ACCGGTGAACAGAATACAGC 57.905 50.000 6.12 0.00 0.00 4.40
1477 1780 6.105397 ACTAGAATTAACCGGTGAACAGAA 57.895 37.500 8.52 0.00 0.00 3.02
1496 1801 6.986231 TGCATGGATATGTAACTGACAACTAG 59.014 38.462 0.00 0.00 42.78 2.57
1502 1809 4.450419 GCTCTGCATGGATATGTAACTGAC 59.550 45.833 0.00 0.00 36.65 3.51
1547 1854 7.962964 TCCACTGTCAATCTTAACTAAACAG 57.037 36.000 0.00 0.00 38.80 3.16
1656 1966 7.595819 AGATCACTATTCTTTACTGAGGGAG 57.404 40.000 0.00 0.00 0.00 4.30
1658 1968 9.535878 GTTTAGATCACTATTCTTTACTGAGGG 57.464 37.037 0.00 0.00 0.00 4.30
1659 1969 9.239002 CGTTTAGATCACTATTCTTTACTGAGG 57.761 37.037 0.00 0.00 0.00 3.86
1660 1970 8.747666 GCGTTTAGATCACTATTCTTTACTGAG 58.252 37.037 0.00 0.00 0.00 3.35
1661 1971 8.467598 AGCGTTTAGATCACTATTCTTTACTGA 58.532 33.333 0.00 0.00 0.00 3.41
1662 1972 8.635877 AGCGTTTAGATCACTATTCTTTACTG 57.364 34.615 0.00 0.00 0.00 2.74
1663 1973 8.688151 AGAGCGTTTAGATCACTATTCTTTACT 58.312 33.333 0.00 0.00 37.82 2.24
1664 1974 8.859517 AGAGCGTTTAGATCACTATTCTTTAC 57.140 34.615 0.00 0.00 37.82 2.01
1678 1988 9.241317 CCGTAAAGAAATATAAGAGCGTTTAGA 57.759 33.333 0.00 0.00 0.00 2.10
1679 1989 9.241317 TCCGTAAAGAAATATAAGAGCGTTTAG 57.759 33.333 0.00 0.00 0.00 1.85
1680 1990 9.241317 CTCCGTAAAGAAATATAAGAGCGTTTA 57.759 33.333 0.00 0.00 0.00 2.01
1681 1991 7.224167 CCTCCGTAAAGAAATATAAGAGCGTTT 59.776 37.037 0.00 0.00 0.00 3.60
1682 1992 6.700520 CCTCCGTAAAGAAATATAAGAGCGTT 59.299 38.462 0.00 0.00 0.00 4.84
1683 1993 6.214399 CCTCCGTAAAGAAATATAAGAGCGT 58.786 40.000 0.00 0.00 0.00 5.07
1684 1994 5.634020 CCCTCCGTAAAGAAATATAAGAGCG 59.366 44.000 0.00 0.00 0.00 5.03
1685 1995 6.756221 TCCCTCCGTAAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
1686 1996 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
1687 1997 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
1688 1998 8.858094 ACTACTCCCTCCGTAAAGAAATATAAG 58.142 37.037 0.00 0.00 0.00 1.73
1689 1999 8.773033 ACTACTCCCTCCGTAAAGAAATATAA 57.227 34.615 0.00 0.00 0.00 0.98
1691 2001 8.953223 ATACTACTCCCTCCGTAAAGAAATAT 57.047 34.615 0.00 0.00 0.00 1.28
1692 2002 9.289782 GTATACTACTCCCTCCGTAAAGAAATA 57.710 37.037 0.00 0.00 0.00 1.40
1693 2003 7.781693 TGTATACTACTCCCTCCGTAAAGAAAT 59.218 37.037 4.17 0.00 0.00 2.17
1694 2004 7.118723 TGTATACTACTCCCTCCGTAAAGAAA 58.881 38.462 4.17 0.00 0.00 2.52
1695 2005 6.662755 TGTATACTACTCCCTCCGTAAAGAA 58.337 40.000 4.17 0.00 0.00 2.52
1696 2006 6.252599 TGTATACTACTCCCTCCGTAAAGA 57.747 41.667 4.17 0.00 0.00 2.52
1697 2007 6.949352 TTGTATACTACTCCCTCCGTAAAG 57.051 41.667 4.17 0.00 0.00 1.85
1698 2008 7.201938 CCAATTGTATACTACTCCCTCCGTAAA 60.202 40.741 4.43 0.00 0.00 2.01
1699 2009 6.266103 CCAATTGTATACTACTCCCTCCGTAA 59.734 42.308 4.43 0.00 0.00 3.18
1700 2010 5.771666 CCAATTGTATACTACTCCCTCCGTA 59.228 44.000 4.43 0.00 0.00 4.02
1701 2011 4.587684 CCAATTGTATACTACTCCCTCCGT 59.412 45.833 4.43 0.00 0.00 4.69
1702 2012 4.587684 ACCAATTGTATACTACTCCCTCCG 59.412 45.833 4.43 0.00 0.00 4.63
1703 2013 5.011840 GGACCAATTGTATACTACTCCCTCC 59.988 48.000 4.43 0.00 0.00 4.30
1704 2014 5.601313 TGGACCAATTGTATACTACTCCCTC 59.399 44.000 4.43 0.00 0.00 4.30
1705 2015 5.535029 TGGACCAATTGTATACTACTCCCT 58.465 41.667 4.43 0.00 0.00 4.20
1706 2016 5.881923 TGGACCAATTGTATACTACTCCC 57.118 43.478 4.43 0.00 0.00 4.30
1707 2017 8.621286 CATTTTGGACCAATTGTATACTACTCC 58.379 37.037 7.99 0.84 0.00 3.85
1708 2018 9.174166 ACATTTTGGACCAATTGTATACTACTC 57.826 33.333 17.41 0.00 0.00 2.59
1709 2019 8.956426 CACATTTTGGACCAATTGTATACTACT 58.044 33.333 18.11 0.00 0.00 2.57
1710 2020 8.952278 TCACATTTTGGACCAATTGTATACTAC 58.048 33.333 18.11 0.00 0.00 2.73
1711 2021 9.693739 ATCACATTTTGGACCAATTGTATACTA 57.306 29.630 18.11 0.00 0.00 1.82
1712 2022 8.593945 ATCACATTTTGGACCAATTGTATACT 57.406 30.769 18.11 5.81 0.00 2.12
1745 2055 7.491372 TCAAACATAGTAGAAATAAGTCAGCCG 59.509 37.037 0.00 0.00 0.00 5.52
1784 2094 0.250338 AGCCCAGACGTGAAAAGGAC 60.250 55.000 0.00 0.00 0.00 3.85
1785 2095 0.250295 CAGCCCAGACGTGAAAAGGA 60.250 55.000 0.00 0.00 0.00 3.36
1787 2097 1.856265 GCCAGCCCAGACGTGAAAAG 61.856 60.000 0.00 0.00 0.00 2.27
1848 2161 4.472470 ACATCATCTCCTCCAAGTCATCAA 59.528 41.667 0.00 0.00 0.00 2.57
1890 2203 4.356405 TCCTCAAAGTCAGCATTGAAGA 57.644 40.909 0.00 0.00 35.31 2.87
1947 2260 0.447801 CGGCTGGTGCTAAACATGAC 59.552 55.000 0.00 0.00 39.59 3.06
1971 2284 2.238521 TGCAAAAGGGCTAGTTCAAGG 58.761 47.619 0.00 0.00 34.04 3.61
1974 2287 4.151883 AGAAATGCAAAAGGGCTAGTTCA 58.848 39.130 0.00 0.00 34.04 3.18
1975 2288 4.790765 AGAAATGCAAAAGGGCTAGTTC 57.209 40.909 0.00 0.00 34.04 3.01
1976 2289 6.857437 ATTAGAAATGCAAAAGGGCTAGTT 57.143 33.333 0.00 0.00 34.04 2.24
1977 2290 7.561356 ACATATTAGAAATGCAAAAGGGCTAGT 59.439 33.333 0.00 0.00 34.04 2.57
1978 2291 7.945134 ACATATTAGAAATGCAAAAGGGCTAG 58.055 34.615 0.00 0.00 34.04 3.42
1979 2292 7.896383 ACATATTAGAAATGCAAAAGGGCTA 57.104 32.000 0.00 0.00 34.04 3.93
1980 2293 6.796785 ACATATTAGAAATGCAAAAGGGCT 57.203 33.333 0.00 0.00 34.04 5.19
1981 2294 6.923508 GGTACATATTAGAAATGCAAAAGGGC 59.076 38.462 0.00 0.00 0.00 5.19
1982 2295 8.237811 AGGTACATATTAGAAATGCAAAAGGG 57.762 34.615 0.00 0.00 0.00 3.95
2015 2328 7.029563 CAGCCTACTTTCGCAATAAGAAATTT 58.970 34.615 0.00 0.00 37.04 1.82
2029 2342 3.198853 AGATCAAGTCCCAGCCTACTTTC 59.801 47.826 0.00 0.00 33.72 2.62
2050 2363 9.125026 AGTCCAAATTTACTCCATTAATGCTAG 57.875 33.333 10.11 11.35 0.00 3.42
2054 2367 8.739039 TGTCAGTCCAAATTTACTCCATTAATG 58.261 33.333 8.58 8.58 0.00 1.90
2084 2401 1.080638 AATGGTTACCAAGGGCCAGA 58.919 50.000 8.63 0.00 36.95 3.86
2103 2420 1.638589 CCATTGTCCTAAACCTCCCCA 59.361 52.381 0.00 0.00 0.00 4.96
2109 2426 2.176045 CCAACCCCATTGTCCTAAACC 58.824 52.381 0.00 0.00 36.47 3.27
2143 2460 3.680786 CACTGGTGTCGCGGGAGA 61.681 66.667 6.13 0.00 0.00 3.71
2150 2467 4.363990 AGCGGCTCACTGGTGTCG 62.364 66.667 0.00 5.40 0.00 4.35
2207 2528 2.220653 TTCCCTTCAAATGGCCTCTG 57.779 50.000 3.32 0.00 0.00 3.35
2223 2544 5.714806 TGGAAGGTTTTACCATCTTGATTCC 59.285 40.000 0.00 1.98 41.95 3.01
2280 2601 8.829612 CAGCCATTTCTTTTAGATTTTGTTTGT 58.170 29.630 0.00 0.00 0.00 2.83
2291 2612 6.583806 CAGTAAACAGCAGCCATTTCTTTTAG 59.416 38.462 0.00 0.00 0.00 1.85
2299 2620 2.558359 GGTTCAGTAAACAGCAGCCATT 59.442 45.455 0.00 0.00 39.81 3.16
2321 2642 0.394625 AGTGGGAGCTACCGAGAGTC 60.395 60.000 11.35 0.00 40.11 3.36
2353 2674 5.394663 GCTGGTGCAGATACTAGAAAGAGAA 60.395 44.000 0.00 0.00 39.41 2.87
2370 2696 0.321564 TACACTGTGATGGCTGGTGC 60.322 55.000 15.86 0.00 38.76 5.01
2422 2748 7.821359 CCTCTAGATCTTGATTTGAACAAGTGA 59.179 37.037 7.34 0.00 43.30 3.41
2474 2800 1.014352 GCCGGATGTGGTGTATCAAC 58.986 55.000 5.05 0.00 0.00 3.18
2508 2834 4.938832 CGGTCACCAAGGTATATTGTGAAA 59.061 41.667 0.00 0.00 0.00 2.69
2531 2857 3.056465 ACCTTGTCTCCATTCTCTCGAAC 60.056 47.826 0.00 0.00 30.67 3.95
2801 3226 1.299648 CCATTTCTCCAGCCGGTGA 59.700 57.895 1.90 0.00 32.93 4.02
2843 3268 1.487976 TCCTCATCAACATCCTCCTGC 59.512 52.381 0.00 0.00 0.00 4.85
2854 3279 9.927668 GAATTTTAAAATCCAAGTCCTCATCAA 57.072 29.630 13.68 0.00 0.00 2.57
2876 3301 6.116126 GCATAGAGGGTAGTGTCAAAGAATT 58.884 40.000 0.00 0.00 0.00 2.17
2878 3303 4.381612 CGCATAGAGGGTAGTGTCAAAGAA 60.382 45.833 0.00 0.00 0.00 2.52
2886 3311 3.735237 ACATTCGCATAGAGGGTAGTG 57.265 47.619 0.00 0.00 0.00 2.74
2891 3316 4.279671 ACTTCTCTACATTCGCATAGAGGG 59.720 45.833 8.11 5.13 43.14 4.30
2935 3360 3.181427 ACCCTTTAACCCACAGCAACATA 60.181 43.478 0.00 0.00 0.00 2.29
2942 3367 2.158519 AGGTCAACCCTTTAACCCACAG 60.159 50.000 0.00 0.00 42.73 3.66
2943 3368 1.854280 AGGTCAACCCTTTAACCCACA 59.146 47.619 0.00 0.00 42.73 4.17
2945 3370 1.479757 GCAGGTCAACCCTTTAACCCA 60.480 52.381 0.00 0.00 42.73 4.51
2946 3371 1.203013 AGCAGGTCAACCCTTTAACCC 60.203 52.381 0.00 0.00 42.73 4.11
2948 3373 1.804748 CGAGCAGGTCAACCCTTTAAC 59.195 52.381 0.00 0.00 42.73 2.01
2949 3374 1.271163 CCGAGCAGGTCAACCCTTTAA 60.271 52.381 0.00 0.00 42.73 1.52
2950 3375 0.323629 CCGAGCAGGTCAACCCTTTA 59.676 55.000 0.00 0.00 42.73 1.85
2967 3392 3.127030 GCAACTAAAGGTCCTTTGATCCG 59.873 47.826 24.63 11.40 35.21 4.18
3021 3446 2.509336 CGAAGGGCCACAGTAGCG 60.509 66.667 6.18 0.00 0.00 4.26
3114 3550 9.729281 TCCGACTTAATTATGGTTAAGAAGTTT 57.271 29.630 14.79 0.00 41.86 2.66
3204 3640 8.629986 CACAAAGAGCGTTGAATTAATAAACAG 58.370 33.333 12.12 7.54 32.59 3.16
3327 3763 5.452078 TCTACTTTGGGAAACAGCATTTG 57.548 39.130 0.00 0.00 0.00 2.32
3355 3791 9.598517 CACAATAAAATTGGCATACAAATAGGT 57.401 29.630 4.78 0.00 43.46 3.08
3356 3792 9.814899 TCACAATAAAATTGGCATACAAATAGG 57.185 29.630 4.78 0.00 43.46 2.57
3364 3800 9.311916 GCACTTAATCACAATAAAATTGGCATA 57.688 29.630 4.78 0.00 0.00 3.14
3365 3801 8.042515 AGCACTTAATCACAATAAAATTGGCAT 58.957 29.630 4.78 0.00 0.00 4.40
3366 3802 7.385267 AGCACTTAATCACAATAAAATTGGCA 58.615 30.769 4.78 0.00 0.00 4.92
3367 3803 7.761249 AGAGCACTTAATCACAATAAAATTGGC 59.239 33.333 4.78 0.00 0.00 4.52
3368 3804 9.643693 AAGAGCACTTAATCACAATAAAATTGG 57.356 29.630 0.00 0.00 34.28 3.16
3514 3950 6.060028 ACGCCATGTAGCAATTAAGTAATG 57.940 37.500 0.00 0.00 0.00 1.90
3522 3958 3.081061 TCAAGAACGCCATGTAGCAATT 58.919 40.909 0.00 0.00 0.00 2.32
3526 3962 1.438651 TGTCAAGAACGCCATGTAGC 58.561 50.000 0.00 0.00 0.00 3.58
3531 3967 3.084039 ACAATCATGTCAAGAACGCCAT 58.916 40.909 0.00 0.00 33.41 4.40
3597 4033 2.635427 TCCCCATGGTAAAGCAAAAACC 59.365 45.455 11.73 0.00 0.00 3.27
3699 4135 0.169009 GATGACTTCGGGCAACAAGC 59.831 55.000 0.00 0.00 44.65 4.01
3709 4145 3.372206 GTGGTGATGAAAGGATGACTTCG 59.628 47.826 0.00 0.00 38.85 3.79
3933 4369 6.096673 TGCTGACTATTATCTCGCCAAATA 57.903 37.500 0.00 0.00 0.00 1.40
3934 4370 4.960938 TGCTGACTATTATCTCGCCAAAT 58.039 39.130 0.00 0.00 0.00 2.32
3935 4371 4.141937 ACTGCTGACTATTATCTCGCCAAA 60.142 41.667 0.00 0.00 0.00 3.28
3936 4372 3.384789 ACTGCTGACTATTATCTCGCCAA 59.615 43.478 0.00 0.00 0.00 4.52
3937 4373 2.959030 ACTGCTGACTATTATCTCGCCA 59.041 45.455 0.00 0.00 0.00 5.69
3938 4374 3.651803 ACTGCTGACTATTATCTCGCC 57.348 47.619 0.00 0.00 0.00 5.54
4046 4484 0.519077 CTGCCCTCGAAGTTTGAAGC 59.481 55.000 7.55 7.55 0.00 3.86
4094 4574 5.428253 GCCTTCATCAGTTACCATCTGTTA 58.572 41.667 0.00 0.00 34.86 2.41
4228 4708 2.978010 GGCACAACAGTCCACCCG 60.978 66.667 0.00 0.00 0.00 5.28
4295 4775 2.486982 CTCTCAGATGGCAGTTTGTTGG 59.513 50.000 0.00 0.00 0.00 3.77
4343 4823 2.030363 TGCCAAGGTTTTGCTAATCACG 60.030 45.455 0.00 0.00 32.79 4.35
4415 4895 3.307410 CCAAGTAATACAGGTGGAGTGCA 60.307 47.826 2.73 0.00 0.00 4.57
4446 4926 2.235016 TGCTACACAACCAACATTCCC 58.765 47.619 0.00 0.00 0.00 3.97
4489 4969 1.083657 CGTTGCCAAGTCGAACACG 60.084 57.895 0.00 0.00 0.00 4.49
4547 5028 1.189524 ACCTACACAGCGGGCACTAA 61.190 55.000 0.00 0.00 0.00 2.24
4548 5029 1.189524 AACCTACACAGCGGGCACTA 61.190 55.000 0.00 0.00 0.00 2.74
4549 5030 2.052047 AAACCTACACAGCGGGCACT 62.052 55.000 0.00 0.00 0.00 4.40
4550 5031 1.170290 AAAACCTACACAGCGGGCAC 61.170 55.000 0.00 0.00 0.00 5.01
4552 5033 1.170290 ACAAAACCTACACAGCGGGC 61.170 55.000 0.00 0.00 0.00 6.13
4553 5034 1.314730 AACAAAACCTACACAGCGGG 58.685 50.000 0.00 0.00 0.00 6.13
4554 5035 4.454504 AGATAAACAAAACCTACACAGCGG 59.545 41.667 0.00 0.00 0.00 5.52
4555 5036 5.607119 AGATAAACAAAACCTACACAGCG 57.393 39.130 0.00 0.00 0.00 5.18
4556 5037 9.738832 TTTTTAGATAAACAAAACCTACACAGC 57.261 29.630 0.00 0.00 0.00 4.40
4594 5155 9.277783 ACAATAACATAGGCAATTCAGATACTC 57.722 33.333 0.00 0.00 0.00 2.59
4602 5163 5.507985 GGCTGGACAATAACATAGGCAATTC 60.508 44.000 0.00 0.00 0.00 2.17
4633 5194 4.788100 CACAGAATTACACATAAACAGCGC 59.212 41.667 0.00 0.00 0.00 5.92
4634 5195 6.015504 GTCACAGAATTACACATAAACAGCG 58.984 40.000 0.00 0.00 0.00 5.18
4670 5231 5.302357 TGATATAGAGCGAGTAGTGCATG 57.698 43.478 0.00 0.00 33.85 4.06
4671 5232 5.966742 TTGATATAGAGCGAGTAGTGCAT 57.033 39.130 0.00 0.00 33.85 3.96
4672 5233 5.767816 TTTGATATAGAGCGAGTAGTGCA 57.232 39.130 0.00 0.00 33.85 4.57
4673 5234 6.642950 ACATTTTGATATAGAGCGAGTAGTGC 59.357 38.462 0.00 0.00 0.00 4.40
4674 5235 9.678941 TTACATTTTGATATAGAGCGAGTAGTG 57.321 33.333 0.00 0.00 0.00 2.74
4675 5236 9.900710 CTTACATTTTGATATAGAGCGAGTAGT 57.099 33.333 0.00 0.00 0.00 2.73
4720 5281 3.577649 AGTCATGAGAGTTACCACGTG 57.422 47.619 9.08 9.08 0.00 4.49
4723 5284 9.303537 GTATTTCTTAGTCATGAGAGTTACCAC 57.696 37.037 0.00 0.00 0.00 4.16
4753 5607 6.540995 ACCATGGAGATATCCAAGAGATTTG 58.459 40.000 21.47 5.04 43.83 2.32
4766 5620 6.840527 TGCAAAGATTGATACCATGGAGATA 58.159 36.000 21.47 0.00 0.00 1.98
4806 5661 2.649190 CTGCTCCAGCTACTCTAGTCA 58.351 52.381 0.00 0.00 42.66 3.41
4822 5693 6.409704 TCACTTCTGAATTACTTATGCTGCT 58.590 36.000 0.00 0.00 0.00 4.24
4856 5727 6.541278 GGTTGGTTAGTTGACTGAGTAAAAGT 59.459 38.462 0.00 0.00 0.00 2.66
4864 5735 9.005777 GTTATATTTGGTTGGTTAGTTGACTGA 57.994 33.333 0.00 0.00 0.00 3.41
4874 5745 7.619050 TCAATGCATGTTATATTTGGTTGGTT 58.381 30.769 0.00 0.00 0.00 3.67
4886 5757 7.087409 TGAAGAAACGATCAATGCATGTTAT 57.913 32.000 0.00 0.00 0.00 1.89
4893 5764 4.889832 ATCCTGAAGAAACGATCAATGC 57.110 40.909 0.00 0.00 0.00 3.56
4895 5766 7.533426 CAAAGAATCCTGAAGAAACGATCAAT 58.467 34.615 0.00 0.00 0.00 2.57
4896 5767 6.568462 GCAAAGAATCCTGAAGAAACGATCAA 60.568 38.462 0.00 0.00 0.00 2.57
4897 5768 5.106555 GCAAAGAATCCTGAAGAAACGATCA 60.107 40.000 0.00 0.00 0.00 2.92
4899 5770 4.761739 TGCAAAGAATCCTGAAGAAACGAT 59.238 37.500 0.00 0.00 0.00 3.73
4901 5772 4.488126 TGCAAAGAATCCTGAAGAAACG 57.512 40.909 0.00 0.00 0.00 3.60
4938 5809 9.847224 AAGGATTGGTAATACAGAAACGAATAT 57.153 29.630 0.00 0.00 0.00 1.28
4939 5810 9.675464 AAAGGATTGGTAATACAGAAACGAATA 57.325 29.630 0.00 0.00 0.00 1.75
4940 5811 8.575649 AAAGGATTGGTAATACAGAAACGAAT 57.424 30.769 0.00 0.00 0.00 3.34
4941 5812 7.989416 AAAGGATTGGTAATACAGAAACGAA 57.011 32.000 0.00 0.00 0.00 3.85
4942 5813 7.989416 AAAAGGATTGGTAATACAGAAACGA 57.011 32.000 0.00 0.00 0.00 3.85
4943 5814 8.179615 GGTAAAAGGATTGGTAATACAGAAACG 58.820 37.037 0.00 0.00 0.00 3.60
4947 5818 8.778059 AGATGGTAAAAGGATTGGTAATACAGA 58.222 33.333 0.00 0.00 0.00 3.41
4956 5827 4.530875 AGCAGAGATGGTAAAAGGATTGG 58.469 43.478 0.00 0.00 0.00 3.16
4976 5847 8.504005 ACATGTGTTTACTTTACTACATCAAGC 58.496 33.333 0.00 0.00 0.00 4.01
4985 5856 6.689669 GTGCGAAAACATGTGTTTACTTTACT 59.310 34.615 11.17 0.00 46.47 2.24
4986 5857 6.689669 AGTGCGAAAACATGTGTTTACTTTAC 59.310 34.615 11.17 7.76 46.47 2.01
4987 5858 6.787225 AGTGCGAAAACATGTGTTTACTTTA 58.213 32.000 11.17 0.00 46.47 1.85
4989 5860 5.243426 AGTGCGAAAACATGTGTTTACTT 57.757 34.783 11.17 0.00 46.47 2.24
5022 6220 4.954118 ACTGTGTCCGGCTGGGGA 62.954 66.667 12.87 0.00 36.01 4.81
5065 6265 2.172717 GCTCTACCCAAAGAATGCCCTA 59.827 50.000 0.00 0.00 0.00 3.53
5092 7116 2.228059 GGATGGATCATGCCTCTGTTG 58.772 52.381 0.00 0.00 0.00 3.33
5100 7124 4.174411 CATGATGTTGGATGGATCATGC 57.826 45.455 0.00 0.00 43.83 4.06
5126 7150 2.224426 TGCTGGTGATTTAACAGGTCGT 60.224 45.455 0.00 0.00 32.98 4.34
5169 7193 1.149964 GCCAGCCGTAACGTACATCC 61.150 60.000 0.00 0.00 0.00 3.51
5172 7196 2.126385 CGCCAGCCGTAACGTACA 60.126 61.111 0.00 0.00 0.00 2.90
5173 7197 3.548231 GCGCCAGCCGTAACGTAC 61.548 66.667 0.00 0.00 39.71 3.67
5174 7198 3.359515 ATGCGCCAGCCGTAACGTA 62.360 57.895 4.18 0.00 44.33 3.57
5175 7199 4.752879 ATGCGCCAGCCGTAACGT 62.753 61.111 4.18 0.00 44.33 3.99
5176 7200 3.925238 GATGCGCCAGCCGTAACG 61.925 66.667 4.18 0.00 44.33 3.18
5177 7201 2.395360 TTGATGCGCCAGCCGTAAC 61.395 57.895 4.18 0.00 44.33 2.50
5178 7202 2.046796 TTGATGCGCCAGCCGTAA 60.047 55.556 4.18 0.00 44.33 3.18
5181 7205 4.170062 CTGTTGATGCGCCAGCCG 62.170 66.667 4.18 0.00 44.33 5.52
5209 7238 1.376037 CCAACGCTGGAAGGAGGTC 60.376 63.158 0.00 0.00 46.92 3.85
5230 7259 1.139853 GAAGGAAGCGAGTGGATGGAT 59.860 52.381 0.00 0.00 0.00 3.41
5231 7260 0.537188 GAAGGAAGCGAGTGGATGGA 59.463 55.000 0.00 0.00 0.00 3.41
5232 7261 0.462759 GGAAGGAAGCGAGTGGATGG 60.463 60.000 0.00 0.00 0.00 3.51
5233 7262 0.539051 AGGAAGGAAGCGAGTGGATG 59.461 55.000 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.