Multiple sequence alignment - TraesCS4D01G013400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G013400 chr4D 100.000 3731 0 0 1 3731 6282589 6286319 0.000000e+00 6890.0
1 TraesCS4D01G013400 chr4D 87.708 1204 71 32 2187 3351 6269706 6268541 0.000000e+00 1332.0
2 TraesCS4D01G013400 chr4D 92.800 125 9 0 1993 2117 6269856 6269732 8.230000e-42 182.0
3 TraesCS4D01G013400 chr4D 80.460 87 14 2 268 354 471812984 471812901 3.110000e-06 63.9
4 TraesCS4D01G013400 chr4A 87.840 3125 184 65 545 3614 597052007 597054990 0.000000e+00 3485.0
5 TraesCS4D01G013400 chr4A 90.877 559 39 5 2339 2893 597030715 597030165 0.000000e+00 739.0
6 TraesCS4D01G013400 chr4A 80.992 242 42 4 279 516 597051766 597052007 4.920000e-44 189.0
7 TraesCS4D01G013400 chr4A 85.455 165 13 6 1994 2151 597030943 597030783 1.070000e-35 161.0
8 TraesCS4D01G013400 chr4A 95.455 66 3 0 2925 2990 597030168 597030103 5.100000e-19 106.0
9 TraesCS4D01G013400 chr4A 97.826 46 1 0 3213 3258 597029869 597029824 3.090000e-11 80.5
10 TraesCS4D01G013400 chr4B 87.424 2974 250 69 568 3478 11432988 11435900 0.000000e+00 3306.0
11 TraesCS4D01G013400 chr4B 86.981 361 40 2 2372 2732 11410200 11409847 2.090000e-107 399.0
12 TraesCS4D01G013400 chr4B 89.637 193 19 1 2764 2955 11409757 11409565 1.040000e-60 244.0
13 TraesCS4D01G013400 chr4B 90.625 96 9 0 3008 3103 11409569 11409474 1.090000e-25 128.0
14 TraesCS4D01G013400 chr4B 88.732 71 8 0 54 124 117789804 117789734 1.850000e-13 87.9
15 TraesCS4D01G013400 chr1B 82.949 1343 161 34 1649 2963 409833859 409832557 0.000000e+00 1149.0
16 TraesCS4D01G013400 chr7D 82.422 1354 143 50 1634 2963 406315156 406313874 0.000000e+00 1094.0
17 TraesCS4D01G013400 chr7D 85.577 104 12 2 21 121 364413190 364413293 5.100000e-19 106.0
18 TraesCS4D01G013400 chr3A 85.124 1089 126 20 1634 2700 358903490 358904564 0.000000e+00 1081.0
19 TraesCS4D01G013400 chr3A 79.736 227 38 2 50 276 225448059 225448277 1.390000e-34 158.0
20 TraesCS4D01G013400 chr3A 78.862 123 22 4 15 135 632775030 632774910 3.090000e-11 80.5
21 TraesCS4D01G013400 chr3B 80.157 1275 157 59 1704 2963 722586401 722585208 0.000000e+00 865.0
22 TraesCS4D01G013400 chr3B 88.158 76 6 3 1615 1687 722586474 722586399 1.850000e-13 87.9
23 TraesCS4D01G013400 chr5A 89.744 468 34 5 2153 2620 667024602 667024149 1.490000e-163 586.0
24 TraesCS4D01G013400 chr7B 87.174 499 33 3 2141 2639 735912550 735913017 4.240000e-149 538.0
25 TraesCS4D01G013400 chr7B 81.416 226 25 11 3002 3215 735913028 735913248 6.410000e-38 169.0
26 TraesCS4D01G013400 chr7B 82.456 114 15 4 22 132 324062814 324062925 1.100000e-15 95.3
27 TraesCS4D01G013400 chr5D 80.156 640 96 21 1189 1805 28024304 28024935 2.040000e-122 449.0
28 TraesCS4D01G013400 chr5D 79.719 641 97 26 1189 1811 27861511 27860886 2.060000e-117 433.0
29 TraesCS4D01G013400 chr5D 89.011 91 10 0 1939 2029 28025054 28025144 3.050000e-21 113.0
30 TraesCS4D01G013400 chr5D 81.250 112 18 2 2 110 479572859 479572748 1.850000e-13 87.9
31 TraesCS4D01G013400 chr2D 84.000 175 27 1 43 217 511472609 511472782 2.300000e-37 167.0
32 TraesCS4D01G013400 chr3D 79.812 213 34 6 29 235 124658093 124658302 3.000000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G013400 chr4D 6282589 6286319 3730 False 6890.000 6890 100.00000 1 3731 1 chr4D.!!$F1 3730
1 TraesCS4D01G013400 chr4D 6268541 6269856 1315 True 757.000 1332 90.25400 1993 3351 2 chr4D.!!$R2 1358
2 TraesCS4D01G013400 chr4A 597051766 597054990 3224 False 1837.000 3485 84.41600 279 3614 2 chr4A.!!$F1 3335
3 TraesCS4D01G013400 chr4A 597029824 597030943 1119 True 271.625 739 92.40325 1994 3258 4 chr4A.!!$R1 1264
4 TraesCS4D01G013400 chr4B 11432988 11435900 2912 False 3306.000 3306 87.42400 568 3478 1 chr4B.!!$F1 2910
5 TraesCS4D01G013400 chr4B 11409474 11410200 726 True 257.000 399 89.08100 2372 3103 3 chr4B.!!$R2 731
6 TraesCS4D01G013400 chr1B 409832557 409833859 1302 True 1149.000 1149 82.94900 1649 2963 1 chr1B.!!$R1 1314
7 TraesCS4D01G013400 chr7D 406313874 406315156 1282 True 1094.000 1094 82.42200 1634 2963 1 chr7D.!!$R1 1329
8 TraesCS4D01G013400 chr3A 358903490 358904564 1074 False 1081.000 1081 85.12400 1634 2700 1 chr3A.!!$F2 1066
9 TraesCS4D01G013400 chr3B 722585208 722586474 1266 True 476.450 865 84.15750 1615 2963 2 chr3B.!!$R1 1348
10 TraesCS4D01G013400 chr7B 735912550 735913248 698 False 353.500 538 84.29500 2141 3215 2 chr7B.!!$F2 1074
11 TraesCS4D01G013400 chr5D 27860886 27861511 625 True 433.000 433 79.71900 1189 1811 1 chr5D.!!$R1 622
12 TraesCS4D01G013400 chr5D 28024304 28025144 840 False 281.000 449 84.58350 1189 2029 2 chr5D.!!$F1 840

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
257 258 0.038983 TTCGCATCCAGTTCGTCGAA 60.039 50.0 2.9 2.9 34.22 3.71 F
258 259 0.038983 TCGCATCCAGTTCGTCGAAA 60.039 50.0 9.7 0.0 0.00 3.46 F
385 387 0.100861 GGCGAGGAAAGAGGTAGACG 59.899 60.0 0.0 0.0 0.00 4.18 F
566 571 0.109597 CATTTCCACAGTTGAGGCGC 60.110 55.0 0.0 0.0 0.00 6.53 F
809 847 0.184933 CCAACACAAACCCCCTCTCA 59.815 55.0 0.0 0.0 0.00 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1072 1119 1.000486 TTGGGACGAGGAGGAGGAG 60.000 63.158 0.0 0.00 0.00 3.69 R
1860 1974 1.043673 GCAGGGGAGGTACGTCATCT 61.044 60.000 16.8 10.22 0.00 2.90 R
1925 2045 1.630369 ACAAGAGGTAATGCAGGCAGA 59.370 47.619 0.0 0.00 0.00 4.26 R
2151 2286 2.120718 AACAGGAGCCCGAGGACT 59.879 61.111 0.0 0.00 0.00 3.85 R
2754 2939 0.321475 GGAGCAGAGCAGCTTGTCTT 60.321 55.000 0.0 0.00 46.75 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.064491 GCGTCTGCGTGCAGTGAC 62.064 66.667 20.33 12.04 43.96 3.67
21 22 3.406361 GTCTGCGTGCAGTGACCG 61.406 66.667 20.33 0.00 43.96 4.79
22 23 4.662961 TCTGCGTGCAGTGACCGG 62.663 66.667 20.33 0.00 43.96 5.28
27 28 3.660111 GTGCAGTGACCGGCCAAC 61.660 66.667 0.00 0.00 0.00 3.77
28 29 4.947147 TGCAGTGACCGGCCAACC 62.947 66.667 0.00 0.00 0.00 3.77
30 31 3.953775 CAGTGACCGGCCAACCCT 61.954 66.667 0.00 0.00 0.00 4.34
31 32 3.637273 AGTGACCGGCCAACCCTC 61.637 66.667 0.00 0.00 0.00 4.30
32 33 3.948719 GTGACCGGCCAACCCTCA 61.949 66.667 0.00 0.00 0.00 3.86
33 34 3.172106 TGACCGGCCAACCCTCAA 61.172 61.111 0.00 0.00 0.00 3.02
34 35 2.114411 GACCGGCCAACCCTCAAA 59.886 61.111 0.00 0.00 0.00 2.69
35 36 1.304134 GACCGGCCAACCCTCAAAT 60.304 57.895 0.00 0.00 0.00 2.32
36 37 1.595093 GACCGGCCAACCCTCAAATG 61.595 60.000 0.00 0.00 0.00 2.32
37 38 1.606313 CCGGCCAACCCTCAAATGT 60.606 57.895 2.24 0.00 0.00 2.71
38 39 1.595093 CCGGCCAACCCTCAAATGTC 61.595 60.000 2.24 0.00 0.00 3.06
39 40 1.595093 CGGCCAACCCTCAAATGTCC 61.595 60.000 2.24 0.00 0.00 4.02
40 41 0.251787 GGCCAACCCTCAAATGTCCT 60.252 55.000 0.00 0.00 0.00 3.85
41 42 1.177401 GCCAACCCTCAAATGTCCTC 58.823 55.000 0.00 0.00 0.00 3.71
42 43 1.272147 GCCAACCCTCAAATGTCCTCT 60.272 52.381 0.00 0.00 0.00 3.69
43 44 2.440409 CCAACCCTCAAATGTCCTCTG 58.560 52.381 0.00 0.00 0.00 3.35
44 45 1.815003 CAACCCTCAAATGTCCTCTGC 59.185 52.381 0.00 0.00 0.00 4.26
45 46 1.067295 ACCCTCAAATGTCCTCTGCA 58.933 50.000 0.00 0.00 0.00 4.41
46 47 1.637553 ACCCTCAAATGTCCTCTGCAT 59.362 47.619 0.00 0.00 0.00 3.96
47 48 2.295885 CCCTCAAATGTCCTCTGCATC 58.704 52.381 0.00 0.00 0.00 3.91
48 49 2.092538 CCCTCAAATGTCCTCTGCATCT 60.093 50.000 0.00 0.00 0.00 2.90
49 50 3.135348 CCCTCAAATGTCCTCTGCATCTA 59.865 47.826 0.00 0.00 0.00 1.98
50 51 4.384537 CCCTCAAATGTCCTCTGCATCTAA 60.385 45.833 0.00 0.00 0.00 2.10
51 52 5.188434 CCTCAAATGTCCTCTGCATCTAAA 58.812 41.667 0.00 0.00 0.00 1.85
52 53 5.826737 CCTCAAATGTCCTCTGCATCTAAAT 59.173 40.000 0.00 0.00 0.00 1.40
53 54 6.994496 CCTCAAATGTCCTCTGCATCTAAATA 59.006 38.462 0.00 0.00 0.00 1.40
54 55 7.041508 CCTCAAATGTCCTCTGCATCTAAATAC 60.042 40.741 0.00 0.00 0.00 1.89
55 56 6.767902 TCAAATGTCCTCTGCATCTAAATACC 59.232 38.462 0.00 0.00 0.00 2.73
56 57 5.894298 ATGTCCTCTGCATCTAAATACCA 57.106 39.130 0.00 0.00 0.00 3.25
57 58 5.023533 TGTCCTCTGCATCTAAATACCAC 57.976 43.478 0.00 0.00 0.00 4.16
58 59 4.469586 TGTCCTCTGCATCTAAATACCACA 59.530 41.667 0.00 0.00 0.00 4.17
59 60 5.130975 TGTCCTCTGCATCTAAATACCACAT 59.869 40.000 0.00 0.00 0.00 3.21
60 61 6.326323 TGTCCTCTGCATCTAAATACCACATA 59.674 38.462 0.00 0.00 0.00 2.29
61 62 6.870965 GTCCTCTGCATCTAAATACCACATAG 59.129 42.308 0.00 0.00 0.00 2.23
62 63 6.554982 TCCTCTGCATCTAAATACCACATAGT 59.445 38.462 0.00 0.00 0.00 2.12
63 64 7.071196 TCCTCTGCATCTAAATACCACATAGTT 59.929 37.037 0.00 0.00 0.00 2.24
64 65 7.386299 CCTCTGCATCTAAATACCACATAGTTC 59.614 40.741 0.00 0.00 0.00 3.01
65 66 7.791029 TCTGCATCTAAATACCACATAGTTCA 58.209 34.615 0.00 0.00 0.00 3.18
66 67 8.264347 TCTGCATCTAAATACCACATAGTTCAA 58.736 33.333 0.00 0.00 0.00 2.69
67 68 8.208718 TGCATCTAAATACCACATAGTTCAAC 57.791 34.615 0.00 0.00 0.00 3.18
68 69 7.282224 TGCATCTAAATACCACATAGTTCAACC 59.718 37.037 0.00 0.00 0.00 3.77
69 70 7.255139 GCATCTAAATACCACATAGTTCAACCC 60.255 40.741 0.00 0.00 0.00 4.11
70 71 7.504926 TCTAAATACCACATAGTTCAACCCT 57.495 36.000 0.00 0.00 0.00 4.34
71 72 7.924541 TCTAAATACCACATAGTTCAACCCTT 58.075 34.615 0.00 0.00 0.00 3.95
72 73 9.049050 TCTAAATACCACATAGTTCAACCCTTA 57.951 33.333 0.00 0.00 0.00 2.69
73 74 9.675464 CTAAATACCACATAGTTCAACCCTTAA 57.325 33.333 0.00 0.00 0.00 1.85
74 75 8.943594 AAATACCACATAGTTCAACCCTTAAA 57.056 30.769 0.00 0.00 0.00 1.52
75 76 8.943594 AATACCACATAGTTCAACCCTTAAAA 57.056 30.769 0.00 0.00 0.00 1.52
76 77 6.644248 ACCACATAGTTCAACCCTTAAAAC 57.356 37.500 0.00 0.00 0.00 2.43
77 78 5.537295 ACCACATAGTTCAACCCTTAAAACC 59.463 40.000 0.00 0.00 0.00 3.27
78 79 5.536916 CCACATAGTTCAACCCTTAAAACCA 59.463 40.000 0.00 0.00 0.00 3.67
79 80 6.210584 CCACATAGTTCAACCCTTAAAACCAT 59.789 38.462 0.00 0.00 0.00 3.55
80 81 7.394923 CCACATAGTTCAACCCTTAAAACCATA 59.605 37.037 0.00 0.00 0.00 2.74
81 82 8.241367 CACATAGTTCAACCCTTAAAACCATAC 58.759 37.037 0.00 0.00 0.00 2.39
82 83 7.945664 ACATAGTTCAACCCTTAAAACCATACA 59.054 33.333 0.00 0.00 0.00 2.29
83 84 8.798402 CATAGTTCAACCCTTAAAACCATACAA 58.202 33.333 0.00 0.00 0.00 2.41
84 85 7.663043 AGTTCAACCCTTAAAACCATACAAA 57.337 32.000 0.00 0.00 0.00 2.83
85 86 7.722363 AGTTCAACCCTTAAAACCATACAAAG 58.278 34.615 0.00 0.00 0.00 2.77
86 87 6.091718 TCAACCCTTAAAACCATACAAAGC 57.908 37.500 0.00 0.00 0.00 3.51
87 88 5.598830 TCAACCCTTAAAACCATACAAAGCA 59.401 36.000 0.00 0.00 0.00 3.91
88 89 6.268847 TCAACCCTTAAAACCATACAAAGCAT 59.731 34.615 0.00 0.00 0.00 3.79
89 90 6.036577 ACCCTTAAAACCATACAAAGCATG 57.963 37.500 0.00 0.00 0.00 4.06
90 91 4.869861 CCCTTAAAACCATACAAAGCATGC 59.130 41.667 10.51 10.51 0.00 4.06
91 92 5.477510 CCTTAAAACCATACAAAGCATGCA 58.522 37.500 21.98 0.00 0.00 3.96
92 93 5.931146 CCTTAAAACCATACAAAGCATGCAA 59.069 36.000 21.98 0.00 0.00 4.08
93 94 6.426328 CCTTAAAACCATACAAAGCATGCAAA 59.574 34.615 21.98 0.00 0.00 3.68
94 95 7.041508 CCTTAAAACCATACAAAGCATGCAAAA 60.042 33.333 21.98 0.20 0.00 2.44
95 96 5.927954 AAACCATACAAAGCATGCAAAAG 57.072 34.783 21.98 9.13 0.00 2.27
96 97 4.870123 ACCATACAAAGCATGCAAAAGA 57.130 36.364 21.98 1.93 0.00 2.52
97 98 5.212532 ACCATACAAAGCATGCAAAAGAA 57.787 34.783 21.98 0.42 0.00 2.52
98 99 5.609423 ACCATACAAAGCATGCAAAAGAAA 58.391 33.333 21.98 0.00 0.00 2.52
99 100 5.466393 ACCATACAAAGCATGCAAAAGAAAC 59.534 36.000 21.98 0.00 0.00 2.78
100 101 5.466058 CCATACAAAGCATGCAAAAGAAACA 59.534 36.000 21.98 0.00 0.00 2.83
101 102 6.148150 CCATACAAAGCATGCAAAAGAAACAT 59.852 34.615 21.98 0.00 0.00 2.71
102 103 5.662211 ACAAAGCATGCAAAAGAAACATC 57.338 34.783 21.98 0.00 0.00 3.06
103 104 5.362263 ACAAAGCATGCAAAAGAAACATCT 58.638 33.333 21.98 0.00 0.00 2.90
104 105 6.514947 ACAAAGCATGCAAAAGAAACATCTA 58.485 32.000 21.98 0.00 0.00 1.98
105 106 6.421801 ACAAAGCATGCAAAAGAAACATCTAC 59.578 34.615 21.98 0.00 0.00 2.59
106 107 5.972107 AGCATGCAAAAGAAACATCTACT 57.028 34.783 21.98 0.00 0.00 2.57
107 108 6.336842 AGCATGCAAAAGAAACATCTACTT 57.663 33.333 21.98 0.00 0.00 2.24
108 109 7.452880 AGCATGCAAAAGAAACATCTACTTA 57.547 32.000 21.98 0.00 0.00 2.24
109 110 7.308435 AGCATGCAAAAGAAACATCTACTTAC 58.692 34.615 21.98 0.00 0.00 2.34
110 111 7.175641 AGCATGCAAAAGAAACATCTACTTACT 59.824 33.333 21.98 0.00 0.00 2.24
111 112 8.450964 GCATGCAAAAGAAACATCTACTTACTA 58.549 33.333 14.21 0.00 0.00 1.82
114 115 9.502091 TGCAAAAGAAACATCTACTTACTATGT 57.498 29.630 0.00 0.00 35.40 2.29
129 130 8.770010 ACTTACTATGTAGATCAGCTAAACCT 57.230 34.615 0.00 0.00 0.00 3.50
130 131 9.863650 ACTTACTATGTAGATCAGCTAAACCTA 57.136 33.333 0.00 0.00 0.00 3.08
132 133 9.636789 TTACTATGTAGATCAGCTAAACCTACA 57.363 33.333 15.22 15.22 42.32 2.74
133 134 7.942990 ACTATGTAGATCAGCTAAACCTACAC 58.057 38.462 15.20 0.00 41.36 2.90
134 135 5.593679 TGTAGATCAGCTAAACCTACACC 57.406 43.478 11.16 0.00 35.97 4.16
135 136 5.020795 TGTAGATCAGCTAAACCTACACCA 58.979 41.667 11.16 0.00 35.97 4.17
136 137 4.744795 AGATCAGCTAAACCTACACCAG 57.255 45.455 0.00 0.00 0.00 4.00
137 138 4.353777 AGATCAGCTAAACCTACACCAGA 58.646 43.478 0.00 0.00 0.00 3.86
138 139 3.955650 TCAGCTAAACCTACACCAGAC 57.044 47.619 0.00 0.00 0.00 3.51
139 140 3.507411 TCAGCTAAACCTACACCAGACT 58.493 45.455 0.00 0.00 0.00 3.24
140 141 4.669700 TCAGCTAAACCTACACCAGACTA 58.330 43.478 0.00 0.00 0.00 2.59
141 142 4.461781 TCAGCTAAACCTACACCAGACTAC 59.538 45.833 0.00 0.00 0.00 2.73
142 143 4.463186 CAGCTAAACCTACACCAGACTACT 59.537 45.833 0.00 0.00 0.00 2.57
143 144 4.705991 AGCTAAACCTACACCAGACTACTC 59.294 45.833 0.00 0.00 0.00 2.59
144 145 4.438472 GCTAAACCTACACCAGACTACTCG 60.438 50.000 0.00 0.00 0.00 4.18
145 146 2.875094 ACCTACACCAGACTACTCGT 57.125 50.000 0.00 0.00 0.00 4.18
146 147 3.151912 ACCTACACCAGACTACTCGTT 57.848 47.619 0.00 0.00 0.00 3.85
147 148 3.494332 ACCTACACCAGACTACTCGTTT 58.506 45.455 0.00 0.00 0.00 3.60
148 149 3.893813 ACCTACACCAGACTACTCGTTTT 59.106 43.478 0.00 0.00 0.00 2.43
149 150 4.022503 ACCTACACCAGACTACTCGTTTTC 60.023 45.833 0.00 0.00 0.00 2.29
150 151 3.009301 ACACCAGACTACTCGTTTTCG 57.991 47.619 0.00 0.00 45.64 3.46
151 152 2.360165 ACACCAGACTACTCGTTTTCGT 59.640 45.455 0.00 0.00 44.46 3.85
152 153 3.181483 ACACCAGACTACTCGTTTTCGTT 60.181 43.478 0.00 0.00 44.46 3.85
153 154 3.181774 CACCAGACTACTCGTTTTCGTTG 59.818 47.826 0.00 0.00 44.46 4.10
154 155 2.729882 CCAGACTACTCGTTTTCGTTGG 59.270 50.000 0.00 0.00 44.46 3.77
155 156 3.551454 CCAGACTACTCGTTTTCGTTGGA 60.551 47.826 0.00 0.00 44.46 3.53
156 157 3.669122 CAGACTACTCGTTTTCGTTGGAG 59.331 47.826 0.00 0.00 44.46 3.86
157 158 3.567164 AGACTACTCGTTTTCGTTGGAGA 59.433 43.478 0.00 0.00 44.46 3.71
158 159 4.217983 AGACTACTCGTTTTCGTTGGAGAT 59.782 41.667 0.00 0.00 44.46 2.75
159 160 4.235360 ACTACTCGTTTTCGTTGGAGATG 58.765 43.478 0.00 0.00 44.46 2.90
160 161 3.107642 ACTCGTTTTCGTTGGAGATGT 57.892 42.857 0.00 0.00 44.46 3.06
161 162 3.057734 ACTCGTTTTCGTTGGAGATGTC 58.942 45.455 0.00 0.00 44.46 3.06
162 163 2.409975 TCGTTTTCGTTGGAGATGTCC 58.590 47.619 0.83 0.83 42.97 4.02
163 164 2.224090 TCGTTTTCGTTGGAGATGTCCA 60.224 45.455 7.67 7.67 46.57 4.02
164 165 4.348717 TCGTTTTCGTTGGAGATGTCCAC 61.349 47.826 11.91 6.27 46.82 4.02
176 177 3.118905 GATGTCCACCATCTTAGCTCC 57.881 52.381 0.00 0.00 45.50 4.70
177 178 0.824109 TGTCCACCATCTTAGCTCCG 59.176 55.000 0.00 0.00 0.00 4.63
178 179 0.105039 GTCCACCATCTTAGCTCCGG 59.895 60.000 0.00 0.00 0.00 5.14
179 180 1.048724 TCCACCATCTTAGCTCCGGG 61.049 60.000 0.00 0.00 0.00 5.73
180 181 1.227674 CACCATCTTAGCTCCGGGC 60.228 63.158 0.00 3.80 42.19 6.13
189 190 3.851128 GCTCCGGGCTCCAGGTAC 61.851 72.222 0.00 0.00 38.06 3.34
190 191 2.363795 CTCCGGGCTCCAGGTACA 60.364 66.667 0.00 0.00 0.00 2.90
191 192 1.762460 CTCCGGGCTCCAGGTACAT 60.762 63.158 0.00 0.00 0.00 2.29
192 193 1.306654 TCCGGGCTCCAGGTACATT 60.307 57.895 0.00 0.00 0.00 2.71
193 194 1.153168 CCGGGCTCCAGGTACATTG 60.153 63.158 0.00 0.00 0.00 2.82
194 195 1.153168 CGGGCTCCAGGTACATTGG 60.153 63.158 8.88 8.88 37.04 3.16
195 196 1.453928 GGGCTCCAGGTACATTGGC 60.454 63.158 10.05 1.31 35.62 4.52
196 197 1.819632 GGCTCCAGGTACATTGGCG 60.820 63.158 10.05 6.12 35.62 5.69
197 198 1.819632 GCTCCAGGTACATTGGCGG 60.820 63.158 10.05 7.20 35.62 6.13
198 199 1.819632 CTCCAGGTACATTGGCGGC 60.820 63.158 0.00 0.00 35.62 6.53
199 200 2.045438 CCAGGTACATTGGCGGCA 60.045 61.111 7.97 7.97 0.00 5.69
200 201 2.114670 CCAGGTACATTGGCGGCAG 61.115 63.158 12.87 3.90 0.00 4.85
201 202 1.078497 CAGGTACATTGGCGGCAGA 60.078 57.895 12.87 3.90 0.00 4.26
202 203 1.091771 CAGGTACATTGGCGGCAGAG 61.092 60.000 12.87 11.47 0.00 3.35
203 204 1.819632 GGTACATTGGCGGCAGAGG 60.820 63.158 12.87 8.40 0.00 3.69
204 205 2.124736 TACATTGGCGGCAGAGGC 60.125 61.111 12.87 0.00 40.13 4.70
205 206 2.965520 TACATTGGCGGCAGAGGCA 61.966 57.895 12.87 0.00 45.22 4.75
240 241 3.855853 GCCTCCGCCTCCTCCTTC 61.856 72.222 0.00 0.00 0.00 3.46
241 242 3.532155 CCTCCGCCTCCTCCTTCG 61.532 72.222 0.00 0.00 0.00 3.79
242 243 4.214327 CTCCGCCTCCTCCTTCGC 62.214 72.222 0.00 0.00 0.00 4.70
244 245 3.854669 CCGCCTCCTCCTTCGCAT 61.855 66.667 0.00 0.00 0.00 4.73
245 246 2.279784 CGCCTCCTCCTTCGCATC 60.280 66.667 0.00 0.00 0.00 3.91
246 247 2.110006 GCCTCCTCCTTCGCATCC 59.890 66.667 0.00 0.00 0.00 3.51
247 248 2.735772 GCCTCCTCCTTCGCATCCA 61.736 63.158 0.00 0.00 0.00 3.41
248 249 1.445095 CCTCCTCCTTCGCATCCAG 59.555 63.158 0.00 0.00 0.00 3.86
249 250 1.333636 CCTCCTCCTTCGCATCCAGT 61.334 60.000 0.00 0.00 0.00 4.00
250 251 0.539051 CTCCTCCTTCGCATCCAGTT 59.461 55.000 0.00 0.00 0.00 3.16
251 252 0.537188 TCCTCCTTCGCATCCAGTTC 59.463 55.000 0.00 0.00 0.00 3.01
252 253 0.807667 CCTCCTTCGCATCCAGTTCG 60.808 60.000 0.00 0.00 0.00 3.95
253 254 0.108615 CTCCTTCGCATCCAGTTCGT 60.109 55.000 0.00 0.00 0.00 3.85
254 255 0.108804 TCCTTCGCATCCAGTTCGTC 60.109 55.000 0.00 0.00 0.00 4.20
255 256 1.413767 CCTTCGCATCCAGTTCGTCG 61.414 60.000 0.00 0.00 0.00 5.12
256 257 0.456142 CTTCGCATCCAGTTCGTCGA 60.456 55.000 0.00 0.00 0.00 4.20
257 258 0.038983 TTCGCATCCAGTTCGTCGAA 60.039 50.000 2.90 2.90 34.22 3.71
258 259 0.038983 TCGCATCCAGTTCGTCGAAA 60.039 50.000 9.70 0.00 0.00 3.46
259 260 0.787787 CGCATCCAGTTCGTCGAAAA 59.212 50.000 9.70 0.00 0.00 2.29
260 261 1.201812 CGCATCCAGTTCGTCGAAAAG 60.202 52.381 9.70 5.14 0.00 2.27
261 262 1.464189 GCATCCAGTTCGTCGAAAAGC 60.464 52.381 9.70 0.00 0.00 3.51
262 263 1.068474 ATCCAGTTCGTCGAAAAGCG 58.932 50.000 9.70 0.00 42.69 4.68
263 264 1.154654 CCAGTTCGTCGAAAAGCGC 60.155 57.895 9.70 0.00 40.61 5.92
264 265 1.562691 CAGTTCGTCGAAAAGCGCA 59.437 52.632 11.47 0.00 40.61 6.09
265 266 0.163788 CAGTTCGTCGAAAAGCGCAT 59.836 50.000 11.47 0.00 40.61 4.73
266 267 0.438830 AGTTCGTCGAAAAGCGCATC 59.561 50.000 11.47 3.71 40.61 3.91
267 268 0.518559 GTTCGTCGAAAAGCGCATCC 60.519 55.000 11.47 0.00 40.61 3.51
268 269 1.951181 TTCGTCGAAAAGCGCATCCG 61.951 55.000 11.47 7.71 40.61 4.18
269 270 2.726691 CGTCGAAAAGCGCATCCGT 61.727 57.895 11.47 0.00 40.61 4.69
270 271 1.058903 GTCGAAAAGCGCATCCGTC 59.941 57.895 11.47 1.51 40.61 4.79
271 272 1.080093 TCGAAAAGCGCATCCGTCT 60.080 52.632 11.47 0.00 40.61 4.18
272 273 1.076533 TCGAAAAGCGCATCCGTCTC 61.077 55.000 11.47 0.00 40.61 3.36
273 274 1.716172 GAAAAGCGCATCCGTCTCC 59.284 57.895 11.47 0.00 36.67 3.71
274 275 2.025359 GAAAAGCGCATCCGTCTCCG 62.025 60.000 11.47 0.00 36.67 4.63
282 283 1.758514 ATCCGTCTCCGCATCCAGT 60.759 57.895 0.00 0.00 0.00 4.00
287 288 0.526524 GTCTCCGCATCCAGTTCTCG 60.527 60.000 0.00 0.00 0.00 4.04
289 290 0.526524 CTCCGCATCCAGTTCTCGTC 60.527 60.000 0.00 0.00 0.00 4.20
297 298 0.460987 CCAGTTCTCGTCCTGCATCC 60.461 60.000 0.00 0.00 0.00 3.51
302 303 1.227089 CTCGTCCTGCATCCGGAAG 60.227 63.158 9.01 4.82 31.13 3.46
303 304 2.892425 CGTCCTGCATCCGGAAGC 60.892 66.667 24.37 24.37 31.13 3.86
335 337 4.549458 GCATTGCCATTGTATATGTGGTC 58.451 43.478 0.00 0.00 35.44 4.02
343 345 6.458751 GCCATTGTATATGTGGTCTTGTTCTG 60.459 42.308 0.00 0.00 35.44 3.02
345 347 4.513442 TGTATATGTGGTCTTGTTCTGCC 58.487 43.478 0.00 0.00 0.00 4.85
355 357 2.124151 GTTCTGCCGGGCCATGAT 60.124 61.111 17.97 0.00 0.00 2.45
357 359 3.719646 TTCTGCCGGGCCATGATGG 62.720 63.158 17.97 7.21 41.55 3.51
380 382 1.606889 AGACGGCGAGGAAAGAGGT 60.607 57.895 16.62 0.00 0.00 3.85
385 387 0.100861 GGCGAGGAAAGAGGTAGACG 59.899 60.000 0.00 0.00 0.00 4.18
386 388 1.093159 GCGAGGAAAGAGGTAGACGA 58.907 55.000 0.00 0.00 0.00 4.20
390 392 3.628487 CGAGGAAAGAGGTAGACGAAGAT 59.372 47.826 0.00 0.00 0.00 2.40
398 400 4.879545 AGAGGTAGACGAAGATGAAGAGAC 59.120 45.833 0.00 0.00 0.00 3.36
399 401 4.850680 AGGTAGACGAAGATGAAGAGACT 58.149 43.478 0.00 0.00 0.00 3.24
404 406 4.082463 AGACGAAGATGAAGAGACTTGGAC 60.082 45.833 0.00 0.00 0.00 4.02
408 410 0.905357 ATGAAGAGACTTGGACGGGG 59.095 55.000 0.00 0.00 0.00 5.73
415 417 1.152312 ACTTGGACGGGGTCAGACT 60.152 57.895 0.00 0.00 33.68 3.24
418 420 3.391382 GGACGGGGTCAGACTGGG 61.391 72.222 1.81 0.00 33.68 4.45
424 426 3.775654 GGTCAGACTGGGGGCTCG 61.776 72.222 1.81 0.00 0.00 5.03
425 427 3.775654 GTCAGACTGGGGGCTCGG 61.776 72.222 1.81 0.00 0.00 4.63
428 430 3.673597 AGACTGGGGGCTCGGAGA 61.674 66.667 9.69 0.00 0.00 3.71
433 438 3.157949 GGGGGCTCGGAGAAGGAG 61.158 72.222 9.69 0.00 34.09 3.69
447 452 4.712337 GGAGAAGGAGGAAGATGTGACTAA 59.288 45.833 0.00 0.00 0.00 2.24
451 456 2.158885 GGAGGAAGATGTGACTAAGGCC 60.159 54.545 0.00 0.00 0.00 5.19
454 459 2.501723 GGAAGATGTGACTAAGGCCAGA 59.498 50.000 5.01 0.00 0.00 3.86
493 498 2.012902 TAGCCGGACTTTAGCCTCGC 62.013 60.000 5.05 0.00 0.00 5.03
498 503 4.735132 ACTTTAGCCTCGCGCGCA 62.735 61.111 32.61 17.14 44.76 6.09
511 516 4.789075 GCGCACGAGCCGGAGTAA 62.789 66.667 5.05 0.00 37.52 2.24
516 521 2.758737 CGAGCCGGAGTAACCCCT 60.759 66.667 5.05 0.00 34.64 4.79
517 522 2.356780 CGAGCCGGAGTAACCCCTT 61.357 63.158 5.05 0.00 34.64 3.95
518 523 1.896122 CGAGCCGGAGTAACCCCTTT 61.896 60.000 5.05 0.00 34.64 3.11
519 524 1.197812 GAGCCGGAGTAACCCCTTTA 58.802 55.000 5.05 0.00 34.64 1.85
520 525 1.767088 GAGCCGGAGTAACCCCTTTAT 59.233 52.381 5.05 0.00 34.64 1.40
521 526 2.172082 GAGCCGGAGTAACCCCTTTATT 59.828 50.000 5.05 0.00 34.64 1.40
522 527 2.579400 AGCCGGAGTAACCCCTTTATTT 59.421 45.455 5.05 0.00 34.64 1.40
523 528 2.686405 GCCGGAGTAACCCCTTTATTTG 59.314 50.000 5.05 0.00 34.64 2.32
524 529 3.874977 GCCGGAGTAACCCCTTTATTTGT 60.875 47.826 5.05 0.00 34.64 2.83
525 530 4.626046 GCCGGAGTAACCCCTTTATTTGTA 60.626 45.833 5.05 0.00 34.64 2.41
526 531 5.499313 CCGGAGTAACCCCTTTATTTGTAA 58.501 41.667 0.00 0.00 34.64 2.41
527 532 6.124340 CCGGAGTAACCCCTTTATTTGTAAT 58.876 40.000 0.00 0.00 34.64 1.89
528 533 6.038936 CCGGAGTAACCCCTTTATTTGTAATG 59.961 42.308 0.00 0.00 34.64 1.90
529 534 6.038936 CGGAGTAACCCCTTTATTTGTAATGG 59.961 42.308 0.00 0.00 34.64 3.16
530 535 6.893554 GGAGTAACCCCTTTATTTGTAATGGT 59.106 38.462 0.00 0.00 0.00 3.55
531 536 8.054572 GGAGTAACCCCTTTATTTGTAATGGTA 58.945 37.037 0.00 0.00 0.00 3.25
532 537 9.465199 GAGTAACCCCTTTATTTGTAATGGTAA 57.535 33.333 0.00 0.00 0.00 2.85
533 538 9.825706 AGTAACCCCTTTATTTGTAATGGTAAA 57.174 29.630 0.00 0.00 0.00 2.01
535 540 7.727578 ACCCCTTTATTTGTAATGGTAAAGG 57.272 36.000 13.26 13.26 46.51 3.11
536 541 6.155565 ACCCCTTTATTTGTAATGGTAAAGGC 59.844 38.462 14.32 0.00 46.00 4.35
537 542 6.382859 CCCCTTTATTTGTAATGGTAAAGGCT 59.617 38.462 14.32 0.00 46.00 4.58
538 543 7.417456 CCCCTTTATTTGTAATGGTAAAGGCTC 60.417 40.741 14.32 0.00 46.00 4.70
539 544 7.123547 CCCTTTATTTGTAATGGTAAAGGCTCA 59.876 37.037 14.32 0.00 46.00 4.26
540 545 8.527810 CCTTTATTTGTAATGGTAAAGGCTCAA 58.472 33.333 9.14 0.00 43.40 3.02
541 546 9.573133 CTTTATTTGTAATGGTAAAGGCTCAAG 57.427 33.333 0.00 0.00 32.96 3.02
542 547 8.871629 TTATTTGTAATGGTAAAGGCTCAAGA 57.128 30.769 0.00 0.00 0.00 3.02
543 548 7.775053 ATTTGTAATGGTAAAGGCTCAAGAA 57.225 32.000 0.00 0.00 0.00 2.52
544 549 6.569179 TTGTAATGGTAAAGGCTCAAGAAC 57.431 37.500 0.00 0.00 0.00 3.01
545 550 5.626142 TGTAATGGTAAAGGCTCAAGAACA 58.374 37.500 0.00 0.00 0.00 3.18
546 551 5.472137 TGTAATGGTAAAGGCTCAAGAACAC 59.528 40.000 0.00 0.00 0.00 3.32
551 556 4.280929 GGTAAAGGCTCAAGAACACCATTT 59.719 41.667 0.00 0.00 0.00 2.32
566 571 0.109597 CATTTCCACAGTTGAGGCGC 60.110 55.000 0.00 0.00 0.00 6.53
572 577 1.956170 ACAGTTGAGGCGCGTTCAG 60.956 57.895 8.43 3.68 0.00 3.02
587 592 4.794439 CAGCGATCGCACCGTCCA 62.794 66.667 38.60 0.00 44.88 4.02
599 604 1.153628 CCGTCCATCCGAAGACACC 60.154 63.158 0.00 0.00 33.08 4.16
602 607 0.460311 GTCCATCCGAAGACACCGAT 59.540 55.000 0.00 0.00 33.08 4.18
603 608 0.459899 TCCATCCGAAGACACCGATG 59.540 55.000 0.00 0.00 0.00 3.84
658 664 0.320771 GTCCGGAGCAGCAGAAGAAA 60.321 55.000 3.06 0.00 0.00 2.52
659 665 0.615331 TCCGGAGCAGCAGAAGAAAT 59.385 50.000 0.00 0.00 0.00 2.17
660 666 1.012841 CCGGAGCAGCAGAAGAAATC 58.987 55.000 0.00 0.00 0.00 2.17
701 711 1.340465 CACGTACACGCGCAATCTC 59.660 57.895 5.73 0.00 44.43 2.75
793 831 4.323477 CGCAAGGACCCGACCCAA 62.323 66.667 0.00 0.00 0.00 4.12
800 838 1.449726 GGACCCGACCCAACACAAAC 61.450 60.000 0.00 0.00 0.00 2.93
803 841 2.197605 CCGACCCAACACAAACCCC 61.198 63.158 0.00 0.00 0.00 4.95
807 845 1.293683 ACCCAACACAAACCCCCTCT 61.294 55.000 0.00 0.00 0.00 3.69
808 846 0.539669 CCCAACACAAACCCCCTCTC 60.540 60.000 0.00 0.00 0.00 3.20
809 847 0.184933 CCAACACAAACCCCCTCTCA 59.815 55.000 0.00 0.00 0.00 3.27
810 848 1.203050 CCAACACAAACCCCCTCTCAT 60.203 52.381 0.00 0.00 0.00 2.90
811 849 2.597455 CAACACAAACCCCCTCTCATT 58.403 47.619 0.00 0.00 0.00 2.57
814 852 2.447047 ACACAAACCCCCTCTCATTCTT 59.553 45.455 0.00 0.00 0.00 2.52
1071 1118 1.074850 CTTCCTCCTCCTCCTCCCC 60.075 68.421 0.00 0.00 0.00 4.81
1072 1119 2.613576 CTTCCTCCTCCTCCTCCCCC 62.614 70.000 0.00 0.00 0.00 5.40
1073 1120 3.039526 CCTCCTCCTCCTCCCCCT 61.040 72.222 0.00 0.00 0.00 4.79
1134 1196 2.354188 CTCCGTCACGTCGTGCAA 60.354 61.111 20.56 1.16 32.98 4.08
1135 1197 1.947146 CTCCGTCACGTCGTGCAAA 60.947 57.895 20.56 0.36 32.98 3.68
1854 1965 4.500116 GCACCGCTCCTCCTCGAC 62.500 72.222 0.00 0.00 0.00 4.20
1925 2045 4.363990 CTCCACGACGGCAGCAGT 62.364 66.667 0.00 0.00 33.14 4.40
2103 2230 2.438434 CCGGCGGCAAAATCCTCT 60.438 61.111 15.42 0.00 0.00 3.69
2109 2236 1.709147 CGGCAAAATCCTCTCGCCAG 61.709 60.000 0.00 0.00 43.13 4.85
2143 2275 3.532155 GCCACGCGATCCTCCTCT 61.532 66.667 15.93 0.00 0.00 3.69
2151 2286 4.841617 ATCCTCCTCTCCGGCGCA 62.842 66.667 10.83 0.00 0.00 6.09
2664 2845 3.643554 GTGTACGGGGTGGGCCTT 61.644 66.667 4.53 0.00 34.45 4.35
2734 2919 1.433879 CTCTGGTTCGGGTAGCTCG 59.566 63.158 0.00 0.00 0.00 5.03
2735 2920 2.202756 CTGGTTCGGGTAGCTCGC 60.203 66.667 0.00 0.00 0.00 5.03
2736 2921 2.678934 TGGTTCGGGTAGCTCGCT 60.679 61.111 0.00 0.00 0.00 4.93
2737 2922 2.104530 GGTTCGGGTAGCTCGCTC 59.895 66.667 0.00 0.00 0.00 5.03
2754 2939 2.432456 CTCGCGCCACAGTAGCAA 60.432 61.111 0.00 0.00 0.00 3.91
2774 3021 1.193462 AGACAAGCTGCTCTGCTCCT 61.193 55.000 1.00 0.45 43.24 3.69
2828 3078 0.399091 CTAGTGGGCTGATGGAGGGA 60.399 60.000 0.00 0.00 0.00 4.20
2833 3083 1.274703 GGGCTGATGGAGGGAGACAA 61.275 60.000 0.00 0.00 0.00 3.18
2899 3157 1.136305 GCGATCAGCCTGTAGGTGTTA 59.864 52.381 0.00 0.00 44.62 2.41
2903 3164 4.271049 CGATCAGCCTGTAGGTGTTAATTG 59.729 45.833 0.00 0.00 44.62 2.32
3114 3426 0.656205 CGTTTCGTTTTCTGTGGCCG 60.656 55.000 0.00 0.00 0.00 6.13
3119 3431 1.568025 GTTTTCTGTGGCCGTCGAC 59.432 57.895 5.18 5.18 0.00 4.20
3145 3488 1.530323 TCTGGATGTCGTCGTCTCAA 58.470 50.000 1.98 0.00 0.00 3.02
3155 3498 1.201855 CGTCGTCTCAAGAAAGCATGC 60.202 52.381 10.51 10.51 0.00 4.06
3160 3503 1.588824 CTCAAGAAAGCATGCCGGCA 61.589 55.000 34.80 34.80 35.83 5.69
3176 3519 3.128375 CAGTTTTGCCCGGCTTGT 58.872 55.556 11.61 0.00 0.00 3.16
3177 3520 1.300080 CAGTTTTGCCCGGCTTGTG 60.300 57.895 11.61 0.00 0.00 3.33
3178 3521 1.756561 AGTTTTGCCCGGCTTGTGT 60.757 52.632 11.61 0.00 0.00 3.72
3179 3522 1.142965 GTTTTGCCCGGCTTGTGTT 59.857 52.632 11.61 0.00 0.00 3.32
3322 3682 2.761195 GCCCGATTCCGTTGCTTCC 61.761 63.158 0.00 0.00 0.00 3.46
3327 3687 2.477863 CCGATTCCGTTGCTTCCAAATC 60.478 50.000 0.00 0.00 31.68 2.17
3373 3733 3.306703 AGCAGCATGTTTGTTTTGTTTCG 59.693 39.130 0.00 0.00 39.31 3.46
3404 3764 7.396540 AAAATTAATCAAGCACGATTCTCCT 57.603 32.000 4.09 0.00 36.92 3.69
3418 3778 4.521146 GATTCTCCTTTCTTGATGCTGGA 58.479 43.478 0.00 0.00 0.00 3.86
3427 3787 1.489649 CTTGATGCTGGAGATGGAGGT 59.510 52.381 0.00 0.00 0.00 3.85
3450 3812 0.250038 AGTACCACTGTGCTGTGCTG 60.250 55.000 1.29 0.00 35.96 4.41
3506 3873 0.590195 GTCTGTGCTTTGCTCCTGTG 59.410 55.000 0.00 0.00 0.00 3.66
3512 3879 1.974957 TGCTTTGCTCCTGTGGTACTA 59.025 47.619 0.00 0.00 0.00 1.82
3515 3882 2.320681 TTGCTCCTGTGGTACTACCT 57.679 50.000 6.93 0.00 39.58 3.08
3516 3883 3.461378 TTGCTCCTGTGGTACTACCTA 57.539 47.619 6.93 0.00 39.58 3.08
3517 3884 2.731572 TGCTCCTGTGGTACTACCTAC 58.268 52.381 6.93 4.30 39.58 3.18
3518 3885 2.310945 TGCTCCTGTGGTACTACCTACT 59.689 50.000 6.93 0.00 39.58 2.57
3519 3886 2.950975 GCTCCTGTGGTACTACCTACTC 59.049 54.545 6.93 0.00 39.58 2.59
3520 3887 3.371810 GCTCCTGTGGTACTACCTACTCT 60.372 52.174 6.93 0.00 39.58 3.24
3521 3888 4.200874 CTCCTGTGGTACTACCTACTCTG 58.799 52.174 6.93 0.45 39.58 3.35
3522 3889 3.590630 TCCTGTGGTACTACCTACTCTGT 59.409 47.826 6.93 0.00 39.58 3.41
3524 3891 4.880696 CCTGTGGTACTACCTACTCTGTAC 59.119 50.000 6.93 0.00 39.58 2.90
3525 3892 5.494724 CTGTGGTACTACCTACTCTGTACA 58.505 45.833 6.93 0.00 39.58 2.90
3527 3894 5.221904 TGTGGTACTACCTACTCTGTACACA 60.222 44.000 6.93 0.00 39.58 3.72
3529 3896 5.884232 TGGTACTACCTACTCTGTACACATG 59.116 44.000 6.79 0.00 39.58 3.21
3530 3897 4.985538 ACTACCTACTCTGTACACATGC 57.014 45.455 0.00 0.00 0.00 4.06
3531 3898 3.700038 ACTACCTACTCTGTACACATGCC 59.300 47.826 0.00 0.00 0.00 4.40
3532 3899 2.821437 ACCTACTCTGTACACATGCCT 58.179 47.619 0.00 0.00 0.00 4.75
3533 3900 2.761208 ACCTACTCTGTACACATGCCTC 59.239 50.000 0.00 0.00 0.00 4.70
3614 3985 3.827898 GGACCGTCCTGCTCCTCG 61.828 72.222 10.59 0.00 32.53 4.63
3615 3986 2.750637 GACCGTCCTGCTCCTCGA 60.751 66.667 0.00 0.00 0.00 4.04
3616 3987 2.282958 ACCGTCCTGCTCCTCGAA 60.283 61.111 0.00 0.00 0.00 3.71
3617 3988 1.874345 GACCGTCCTGCTCCTCGAAA 61.874 60.000 0.00 0.00 0.00 3.46
3618 3989 1.446272 CCGTCCTGCTCCTCGAAAC 60.446 63.158 0.00 0.00 0.00 2.78
3619 3990 1.289066 CGTCCTGCTCCTCGAAACA 59.711 57.895 0.00 0.00 0.00 2.83
3620 3991 0.319555 CGTCCTGCTCCTCGAAACAA 60.320 55.000 0.00 0.00 0.00 2.83
3621 3992 1.149148 GTCCTGCTCCTCGAAACAAC 58.851 55.000 0.00 0.00 0.00 3.32
3622 3993 0.319555 TCCTGCTCCTCGAAACAACG 60.320 55.000 0.00 0.00 0.00 4.10
3623 3994 1.291877 CCTGCTCCTCGAAACAACGG 61.292 60.000 0.00 0.00 0.00 4.44
3624 3995 0.319555 CTGCTCCTCGAAACAACGGA 60.320 55.000 0.00 0.00 0.00 4.69
3625 3996 0.105224 TGCTCCTCGAAACAACGGAA 59.895 50.000 0.00 0.00 0.00 4.30
3626 3997 1.270625 TGCTCCTCGAAACAACGGAAT 60.271 47.619 0.00 0.00 0.00 3.01
3627 3998 1.804748 GCTCCTCGAAACAACGGAATT 59.195 47.619 0.00 0.00 0.00 2.17
3628 3999 2.412847 GCTCCTCGAAACAACGGAATTG 60.413 50.000 0.00 0.00 44.60 2.32
3638 4009 3.122937 CAACGGAATTGTAGAAGCTGC 57.877 47.619 0.00 0.00 33.20 5.25
3639 4010 1.739067 ACGGAATTGTAGAAGCTGCC 58.261 50.000 0.00 0.00 0.00 4.85
3640 4011 1.017387 CGGAATTGTAGAAGCTGCCC 58.983 55.000 0.00 0.00 0.00 5.36
3641 4012 1.393603 GGAATTGTAGAAGCTGCCCC 58.606 55.000 0.00 0.00 0.00 5.80
3642 4013 1.340991 GGAATTGTAGAAGCTGCCCCA 60.341 52.381 0.00 0.00 0.00 4.96
3643 4014 2.446435 GAATTGTAGAAGCTGCCCCAA 58.554 47.619 0.00 0.00 0.00 4.12
3644 4015 1.839424 ATTGTAGAAGCTGCCCCAAC 58.161 50.000 0.00 0.00 0.00 3.77
3645 4016 0.251165 TTGTAGAAGCTGCCCCAACC 60.251 55.000 0.00 0.00 0.00 3.77
3646 4017 1.745489 GTAGAAGCTGCCCCAACCG 60.745 63.158 0.00 0.00 0.00 4.44
3647 4018 3.622060 TAGAAGCTGCCCCAACCGC 62.622 63.158 0.00 0.00 0.00 5.68
3661 4032 3.197790 CCGCTGCGGTGATCTTGG 61.198 66.667 31.72 3.73 42.73 3.61
3662 4033 2.125552 CGCTGCGGTGATCTTGGA 60.126 61.111 15.40 0.00 0.00 3.53
3663 4034 2.456119 CGCTGCGGTGATCTTGGAC 61.456 63.158 15.40 0.00 0.00 4.02
3664 4035 1.375908 GCTGCGGTGATCTTGGACA 60.376 57.895 0.00 0.00 0.00 4.02
3665 4036 0.955428 GCTGCGGTGATCTTGGACAA 60.955 55.000 0.00 0.00 0.00 3.18
3666 4037 1.522668 CTGCGGTGATCTTGGACAAA 58.477 50.000 0.00 0.00 0.00 2.83
3667 4038 1.879380 CTGCGGTGATCTTGGACAAAA 59.121 47.619 0.00 0.00 0.00 2.44
3668 4039 1.606668 TGCGGTGATCTTGGACAAAAC 59.393 47.619 0.00 0.00 0.00 2.43
3669 4040 1.606668 GCGGTGATCTTGGACAAAACA 59.393 47.619 0.00 0.00 0.00 2.83
3670 4041 2.034053 GCGGTGATCTTGGACAAAACAA 59.966 45.455 0.00 0.00 0.00 2.83
3671 4042 3.628017 CGGTGATCTTGGACAAAACAAC 58.372 45.455 0.00 0.00 0.00 3.32
3672 4043 3.550030 CGGTGATCTTGGACAAAACAACC 60.550 47.826 0.00 0.00 0.00 3.77
3673 4044 3.383185 GGTGATCTTGGACAAAACAACCA 59.617 43.478 0.00 0.00 0.00 3.67
3674 4045 4.039124 GGTGATCTTGGACAAAACAACCAT 59.961 41.667 0.00 0.00 33.56 3.55
3675 4046 5.222631 GTGATCTTGGACAAAACAACCATC 58.777 41.667 0.00 0.00 33.56 3.51
3676 4047 4.892345 TGATCTTGGACAAAACAACCATCA 59.108 37.500 0.00 0.00 33.56 3.07
3677 4048 5.362143 TGATCTTGGACAAAACAACCATCAA 59.638 36.000 0.00 0.00 33.56 2.57
3678 4049 5.867903 TCTTGGACAAAACAACCATCAAT 57.132 34.783 0.00 0.00 33.56 2.57
3679 4050 5.599732 TCTTGGACAAAACAACCATCAATG 58.400 37.500 0.00 0.00 33.56 2.82
3680 4051 3.726607 TGGACAAAACAACCATCAATGC 58.273 40.909 0.00 0.00 0.00 3.56
3681 4052 3.133542 TGGACAAAACAACCATCAATGCA 59.866 39.130 0.00 0.00 0.00 3.96
3682 4053 4.202336 TGGACAAAACAACCATCAATGCAT 60.202 37.500 0.00 0.00 0.00 3.96
3683 4054 4.756135 GGACAAAACAACCATCAATGCATT 59.244 37.500 5.99 5.99 0.00 3.56
3684 4055 5.931146 GGACAAAACAACCATCAATGCATTA 59.069 36.000 12.53 1.34 0.00 1.90
3685 4056 6.128580 GGACAAAACAACCATCAATGCATTAC 60.129 38.462 12.53 0.00 0.00 1.89
3686 4057 6.286758 ACAAAACAACCATCAATGCATTACA 58.713 32.000 12.53 1.85 0.00 2.41
3687 4058 6.935771 ACAAAACAACCATCAATGCATTACAT 59.064 30.769 12.53 4.40 42.30 2.29
3688 4059 7.118101 ACAAAACAACCATCAATGCATTACATC 59.882 33.333 12.53 0.00 38.34 3.06
3689 4060 4.923893 ACAACCATCAATGCATTACATCG 58.076 39.130 12.53 2.83 38.34 3.84
3690 4061 4.398988 ACAACCATCAATGCATTACATCGT 59.601 37.500 12.53 3.46 38.34 3.73
3691 4062 5.588246 ACAACCATCAATGCATTACATCGTA 59.412 36.000 12.53 0.00 38.34 3.43
3692 4063 5.929697 ACCATCAATGCATTACATCGTAG 57.070 39.130 12.53 0.00 38.34 3.51
3693 4064 4.214119 ACCATCAATGCATTACATCGTAGC 59.786 41.667 12.53 0.00 38.34 3.58
3694 4065 4.388790 CATCAATGCATTACATCGTAGCG 58.611 43.478 12.53 0.00 38.34 4.26
3695 4066 2.799978 TCAATGCATTACATCGTAGCGG 59.200 45.455 12.53 0.00 38.34 5.52
3696 4067 2.799978 CAATGCATTACATCGTAGCGGA 59.200 45.455 12.53 0.00 38.34 5.54
3697 4068 1.847818 TGCATTACATCGTAGCGGAC 58.152 50.000 0.00 0.00 0.00 4.79
3698 4069 1.137513 GCATTACATCGTAGCGGACC 58.862 55.000 0.00 0.00 0.00 4.46
3699 4070 1.405461 CATTACATCGTAGCGGACCG 58.595 55.000 10.29 10.29 0.00 4.79
3700 4071 1.002142 CATTACATCGTAGCGGACCGA 60.002 52.381 20.50 0.00 37.51 4.69
3701 4072 1.311859 TTACATCGTAGCGGACCGAT 58.688 50.000 20.50 15.58 44.07 4.18
3702 4073 2.168326 TACATCGTAGCGGACCGATA 57.832 50.000 20.50 14.21 41.54 2.92
3703 4074 0.590195 ACATCGTAGCGGACCGATAC 59.410 55.000 28.15 28.15 43.82 2.24
3704 4075 0.589708 CATCGTAGCGGACCGATACA 59.410 55.000 34.07 23.74 46.92 2.29
3705 4076 1.002142 CATCGTAGCGGACCGATACAA 60.002 52.381 34.07 22.46 46.92 2.41
3706 4077 1.093972 TCGTAGCGGACCGATACAAA 58.906 50.000 34.07 22.24 46.92 2.83
3707 4078 1.194495 CGTAGCGGACCGATACAAAC 58.806 55.000 34.07 16.40 46.92 2.93
3708 4079 1.194495 GTAGCGGACCGATACAAACG 58.806 55.000 31.69 0.00 46.03 3.60
3709 4080 0.526096 TAGCGGACCGATACAAACGC 60.526 55.000 20.50 0.00 46.50 4.84
3710 4081 2.095847 GCGGACCGATACAAACGCA 61.096 57.895 20.50 0.00 45.57 5.24
3711 4082 1.426041 GCGGACCGATACAAACGCAT 61.426 55.000 20.50 0.00 45.57 4.73
3712 4083 0.300491 CGGACCGATACAAACGCATG 59.700 55.000 8.64 0.00 0.00 4.06
3713 4084 0.027586 GGACCGATACAAACGCATGC 59.972 55.000 7.91 7.91 0.00 4.06
3714 4085 0.027586 GACCGATACAAACGCATGCC 59.972 55.000 13.15 0.00 0.00 4.40
3715 4086 0.675208 ACCGATACAAACGCATGCCA 60.675 50.000 13.15 0.00 0.00 4.92
3716 4087 0.248054 CCGATACAAACGCATGCCAC 60.248 55.000 13.15 0.00 0.00 5.01
3717 4088 0.248054 CGATACAAACGCATGCCACC 60.248 55.000 13.15 0.00 0.00 4.61
3718 4089 0.808125 GATACAAACGCATGCCACCA 59.192 50.000 13.15 0.00 0.00 4.17
3719 4090 0.525761 ATACAAACGCATGCCACCAC 59.474 50.000 13.15 0.00 0.00 4.16
3720 4091 1.519751 TACAAACGCATGCCACCACC 61.520 55.000 13.15 0.00 0.00 4.61
3721 4092 3.669344 AAACGCATGCCACCACCG 61.669 61.111 13.15 0.00 0.00 4.94
3726 4097 4.041917 CATGCCACCACCGCACAC 62.042 66.667 0.00 0.00 39.49 3.82
3727 4098 4.577677 ATGCCACCACCGCACACA 62.578 61.111 0.00 0.00 39.49 3.72
3728 4099 4.803908 TGCCACCACCGCACACAA 62.804 61.111 0.00 0.00 0.00 3.33
3729 4100 3.294493 GCCACCACCGCACACAAT 61.294 61.111 0.00 0.00 0.00 2.71
3730 4101 1.969064 GCCACCACCGCACACAATA 60.969 57.895 0.00 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.064491 GTCACTGCACGCAGACGC 62.064 66.667 25.09 10.20 46.30 5.19
5 6 4.662961 CCGGTCACTGCACGCAGA 62.663 66.667 25.09 1.19 46.30 4.26
13 14 3.901797 GAGGGTTGGCCGGTCACTG 62.902 68.421 9.15 0.00 34.97 3.66
14 15 3.637273 GAGGGTTGGCCGGTCACT 61.637 66.667 9.15 1.56 34.97 3.41
16 17 2.075355 ATTTGAGGGTTGGCCGGTCA 62.075 55.000 3.51 3.51 34.97 4.02
17 18 1.304134 ATTTGAGGGTTGGCCGGTC 60.304 57.895 0.00 0.00 34.97 4.79
18 19 1.606313 CATTTGAGGGTTGGCCGGT 60.606 57.895 1.90 0.00 34.97 5.28
19 20 1.595093 GACATTTGAGGGTTGGCCGG 61.595 60.000 0.00 0.00 34.97 6.13
21 22 0.251787 AGGACATTTGAGGGTTGGCC 60.252 55.000 0.00 0.00 38.96 5.36
22 23 1.177401 GAGGACATTTGAGGGTTGGC 58.823 55.000 0.00 0.00 0.00 4.52
23 24 2.440409 CAGAGGACATTTGAGGGTTGG 58.560 52.381 0.00 0.00 0.00 3.77
24 25 1.815003 GCAGAGGACATTTGAGGGTTG 59.185 52.381 0.00 0.00 0.00 3.77
25 26 1.425066 TGCAGAGGACATTTGAGGGTT 59.575 47.619 0.00 0.00 0.00 4.11
26 27 1.067295 TGCAGAGGACATTTGAGGGT 58.933 50.000 0.00 0.00 0.00 4.34
27 28 2.092538 AGATGCAGAGGACATTTGAGGG 60.093 50.000 0.00 0.00 0.00 4.30
28 29 3.278668 AGATGCAGAGGACATTTGAGG 57.721 47.619 0.00 0.00 0.00 3.86
29 30 6.939132 ATTTAGATGCAGAGGACATTTGAG 57.061 37.500 0.00 0.00 0.00 3.02
30 31 6.767902 GGTATTTAGATGCAGAGGACATTTGA 59.232 38.462 0.00 0.00 0.00 2.69
31 32 6.543465 TGGTATTTAGATGCAGAGGACATTTG 59.457 38.462 0.00 0.00 0.00 2.32
32 33 6.543831 GTGGTATTTAGATGCAGAGGACATTT 59.456 38.462 0.00 0.00 0.00 2.32
33 34 6.058183 GTGGTATTTAGATGCAGAGGACATT 58.942 40.000 0.00 0.00 0.00 2.71
34 35 5.130975 TGTGGTATTTAGATGCAGAGGACAT 59.869 40.000 0.00 0.00 0.00 3.06
35 36 4.469586 TGTGGTATTTAGATGCAGAGGACA 59.530 41.667 0.00 0.00 0.00 4.02
36 37 5.023533 TGTGGTATTTAGATGCAGAGGAC 57.976 43.478 0.00 0.00 0.00 3.85
37 38 5.894298 ATGTGGTATTTAGATGCAGAGGA 57.106 39.130 0.00 0.00 0.00 3.71
38 39 6.763355 ACTATGTGGTATTTAGATGCAGAGG 58.237 40.000 0.00 0.00 0.00 3.69
39 40 7.928167 TGAACTATGTGGTATTTAGATGCAGAG 59.072 37.037 0.00 0.00 0.00 3.35
40 41 7.791029 TGAACTATGTGGTATTTAGATGCAGA 58.209 34.615 0.00 0.00 0.00 4.26
41 42 8.338259 GTTGAACTATGTGGTATTTAGATGCAG 58.662 37.037 0.00 0.00 0.00 4.41
42 43 7.282224 GGTTGAACTATGTGGTATTTAGATGCA 59.718 37.037 0.00 0.00 0.00 3.96
43 44 7.255139 GGGTTGAACTATGTGGTATTTAGATGC 60.255 40.741 0.00 0.00 0.00 3.91
44 45 7.993183 AGGGTTGAACTATGTGGTATTTAGATG 59.007 37.037 0.00 0.00 0.00 2.90
45 46 8.102484 AGGGTTGAACTATGTGGTATTTAGAT 57.898 34.615 0.00 0.00 0.00 1.98
46 47 7.504926 AGGGTTGAACTATGTGGTATTTAGA 57.495 36.000 0.00 0.00 0.00 2.10
47 48 9.675464 TTAAGGGTTGAACTATGTGGTATTTAG 57.325 33.333 0.00 0.00 0.00 1.85
49 50 8.943594 TTTAAGGGTTGAACTATGTGGTATTT 57.056 30.769 0.00 0.00 0.00 1.40
50 51 8.799367 GTTTTAAGGGTTGAACTATGTGGTATT 58.201 33.333 0.00 0.00 0.00 1.89
51 52 7.395206 GGTTTTAAGGGTTGAACTATGTGGTAT 59.605 37.037 0.00 0.00 0.00 2.73
52 53 6.716173 GGTTTTAAGGGTTGAACTATGTGGTA 59.284 38.462 0.00 0.00 0.00 3.25
53 54 5.537295 GGTTTTAAGGGTTGAACTATGTGGT 59.463 40.000 0.00 0.00 0.00 4.16
54 55 5.536916 TGGTTTTAAGGGTTGAACTATGTGG 59.463 40.000 0.00 0.00 0.00 4.17
55 56 6.642707 TGGTTTTAAGGGTTGAACTATGTG 57.357 37.500 0.00 0.00 0.00 3.21
56 57 7.945664 TGTATGGTTTTAAGGGTTGAACTATGT 59.054 33.333 0.00 0.00 0.00 2.29
57 58 8.343168 TGTATGGTTTTAAGGGTTGAACTATG 57.657 34.615 0.00 0.00 0.00 2.23
58 59 8.943594 TTGTATGGTTTTAAGGGTTGAACTAT 57.056 30.769 0.00 0.00 0.00 2.12
59 60 8.763984 TTTGTATGGTTTTAAGGGTTGAACTA 57.236 30.769 0.00 0.00 0.00 2.24
60 61 7.663043 TTTGTATGGTTTTAAGGGTTGAACT 57.337 32.000 0.00 0.00 0.00 3.01
61 62 6.422701 GCTTTGTATGGTTTTAAGGGTTGAAC 59.577 38.462 0.00 0.00 0.00 3.18
62 63 6.098409 TGCTTTGTATGGTTTTAAGGGTTGAA 59.902 34.615 0.00 0.00 0.00 2.69
63 64 5.598830 TGCTTTGTATGGTTTTAAGGGTTGA 59.401 36.000 0.00 0.00 0.00 3.18
64 65 5.848406 TGCTTTGTATGGTTTTAAGGGTTG 58.152 37.500 0.00 0.00 0.00 3.77
65 66 6.463360 CATGCTTTGTATGGTTTTAAGGGTT 58.537 36.000 0.00 0.00 0.00 4.11
66 67 5.568624 GCATGCTTTGTATGGTTTTAAGGGT 60.569 40.000 11.37 0.00 0.00 4.34
67 68 4.869861 GCATGCTTTGTATGGTTTTAAGGG 59.130 41.667 11.37 0.00 0.00 3.95
68 69 5.477510 TGCATGCTTTGTATGGTTTTAAGG 58.522 37.500 20.33 0.00 0.00 2.69
69 70 7.418840 TTTGCATGCTTTGTATGGTTTTAAG 57.581 32.000 20.33 0.00 0.00 1.85
70 71 7.712639 TCTTTTGCATGCTTTGTATGGTTTTAA 59.287 29.630 20.33 0.00 0.00 1.52
71 72 7.212976 TCTTTTGCATGCTTTGTATGGTTTTA 58.787 30.769 20.33 0.00 0.00 1.52
72 73 6.054295 TCTTTTGCATGCTTTGTATGGTTTT 58.946 32.000 20.33 0.00 0.00 2.43
73 74 5.609423 TCTTTTGCATGCTTTGTATGGTTT 58.391 33.333 20.33 0.00 0.00 3.27
74 75 5.212532 TCTTTTGCATGCTTTGTATGGTT 57.787 34.783 20.33 0.00 0.00 3.67
75 76 4.870123 TCTTTTGCATGCTTTGTATGGT 57.130 36.364 20.33 0.00 0.00 3.55
76 77 5.466058 TGTTTCTTTTGCATGCTTTGTATGG 59.534 36.000 20.33 1.44 0.00 2.74
77 78 6.528014 TGTTTCTTTTGCATGCTTTGTATG 57.472 33.333 20.33 3.01 0.00 2.39
78 79 7.156673 AGATGTTTCTTTTGCATGCTTTGTAT 58.843 30.769 20.33 1.98 0.00 2.29
79 80 6.514947 AGATGTTTCTTTTGCATGCTTTGTA 58.485 32.000 20.33 0.00 0.00 2.41
80 81 5.362263 AGATGTTTCTTTTGCATGCTTTGT 58.638 33.333 20.33 0.00 0.00 2.83
81 82 5.917541 AGATGTTTCTTTTGCATGCTTTG 57.082 34.783 20.33 6.73 0.00 2.77
82 83 6.752168 AGTAGATGTTTCTTTTGCATGCTTT 58.248 32.000 20.33 0.00 33.17 3.51
83 84 6.336842 AGTAGATGTTTCTTTTGCATGCTT 57.663 33.333 20.33 0.00 33.17 3.91
84 85 5.972107 AGTAGATGTTTCTTTTGCATGCT 57.028 34.783 20.33 0.00 33.17 3.79
85 86 7.308435 AGTAAGTAGATGTTTCTTTTGCATGC 58.692 34.615 11.82 11.82 33.17 4.06
88 89 9.502091 ACATAGTAAGTAGATGTTTCTTTTGCA 57.498 29.630 0.00 0.00 33.17 4.08
103 104 9.863650 AGGTTTAGCTGATCTACATAGTAAGTA 57.136 33.333 0.00 0.00 0.00 2.24
104 105 8.770010 AGGTTTAGCTGATCTACATAGTAAGT 57.230 34.615 0.00 0.00 0.00 2.24
106 107 9.636789 TGTAGGTTTAGCTGATCTACATAGTAA 57.363 33.333 16.62 0.00 36.42 2.24
107 108 9.064706 GTGTAGGTTTAGCTGATCTACATAGTA 57.935 37.037 20.97 3.14 41.19 1.82
108 109 7.014422 GGTGTAGGTTTAGCTGATCTACATAGT 59.986 40.741 20.97 0.00 41.19 2.12
109 110 7.014326 TGGTGTAGGTTTAGCTGATCTACATAG 59.986 40.741 20.97 0.00 41.19 2.23
110 111 6.837048 TGGTGTAGGTTTAGCTGATCTACATA 59.163 38.462 20.97 13.85 41.19 2.29
111 112 5.661312 TGGTGTAGGTTTAGCTGATCTACAT 59.339 40.000 20.97 0.83 41.19 2.29
112 113 5.020795 TGGTGTAGGTTTAGCTGATCTACA 58.979 41.667 16.62 16.62 38.23 2.74
113 114 5.360144 TCTGGTGTAGGTTTAGCTGATCTAC 59.640 44.000 12.85 12.85 0.00 2.59
114 115 5.360144 GTCTGGTGTAGGTTTAGCTGATCTA 59.640 44.000 0.00 0.00 0.00 1.98
115 116 4.160626 GTCTGGTGTAGGTTTAGCTGATCT 59.839 45.833 0.00 0.00 0.00 2.75
116 117 4.160626 AGTCTGGTGTAGGTTTAGCTGATC 59.839 45.833 0.00 0.00 0.00 2.92
117 118 4.097418 AGTCTGGTGTAGGTTTAGCTGAT 58.903 43.478 0.00 0.00 0.00 2.90
118 119 3.507411 AGTCTGGTGTAGGTTTAGCTGA 58.493 45.455 0.00 0.00 0.00 4.26
119 120 3.963428 AGTCTGGTGTAGGTTTAGCTG 57.037 47.619 0.00 0.00 0.00 4.24
120 121 4.675038 AGTAGTCTGGTGTAGGTTTAGCT 58.325 43.478 0.00 0.00 0.00 3.32
121 122 4.438472 CGAGTAGTCTGGTGTAGGTTTAGC 60.438 50.000 0.00 0.00 0.00 3.09
122 123 4.699257 ACGAGTAGTCTGGTGTAGGTTTAG 59.301 45.833 0.00 0.00 31.68 1.85
123 124 4.655963 ACGAGTAGTCTGGTGTAGGTTTA 58.344 43.478 0.00 0.00 31.68 2.01
124 125 3.494332 ACGAGTAGTCTGGTGTAGGTTT 58.506 45.455 0.00 0.00 31.68 3.27
125 126 3.151912 ACGAGTAGTCTGGTGTAGGTT 57.848 47.619 0.00 0.00 31.68 3.50
126 127 2.875094 ACGAGTAGTCTGGTGTAGGT 57.125 50.000 0.00 0.00 31.68 3.08
127 128 4.483311 GAAAACGAGTAGTCTGGTGTAGG 58.517 47.826 0.00 0.00 33.14 3.18
128 129 4.156915 CGAAAACGAGTAGTCTGGTGTAG 58.843 47.826 0.00 0.00 33.14 2.74
129 130 3.565482 ACGAAAACGAGTAGTCTGGTGTA 59.435 43.478 0.00 0.00 33.14 2.90
130 131 2.360165 ACGAAAACGAGTAGTCTGGTGT 59.640 45.455 0.00 0.00 33.14 4.16
131 132 3.009301 ACGAAAACGAGTAGTCTGGTG 57.991 47.619 0.00 0.00 33.14 4.17
132 133 3.378339 CAACGAAAACGAGTAGTCTGGT 58.622 45.455 0.00 0.00 34.21 4.00
133 134 2.729882 CCAACGAAAACGAGTAGTCTGG 59.270 50.000 0.00 0.00 0.00 3.86
134 135 3.635331 TCCAACGAAAACGAGTAGTCTG 58.365 45.455 0.00 0.00 0.00 3.51
135 136 3.567164 TCTCCAACGAAAACGAGTAGTCT 59.433 43.478 0.00 0.00 0.00 3.24
136 137 3.893720 TCTCCAACGAAAACGAGTAGTC 58.106 45.455 0.00 0.00 0.00 2.59
137 138 3.996150 TCTCCAACGAAAACGAGTAGT 57.004 42.857 0.00 0.00 0.00 2.73
138 139 4.235360 ACATCTCCAACGAAAACGAGTAG 58.765 43.478 0.00 0.00 0.00 2.57
139 140 4.232221 GACATCTCCAACGAAAACGAGTA 58.768 43.478 0.00 0.00 0.00 2.59
140 141 3.057734 GACATCTCCAACGAAAACGAGT 58.942 45.455 0.00 0.00 0.00 4.18
141 142 2.412089 GGACATCTCCAACGAAAACGAG 59.588 50.000 0.00 0.00 36.42 4.18
142 143 2.224090 TGGACATCTCCAACGAAAACGA 60.224 45.455 0.00 0.00 44.26 3.85
143 144 2.139917 TGGACATCTCCAACGAAAACG 58.860 47.619 0.00 0.00 44.26 3.60
157 158 1.414181 CGGAGCTAAGATGGTGGACAT 59.586 52.381 0.00 0.00 44.18 3.06
158 159 0.824109 CGGAGCTAAGATGGTGGACA 59.176 55.000 0.00 0.00 0.00 4.02
159 160 0.105039 CCGGAGCTAAGATGGTGGAC 59.895 60.000 0.00 0.00 0.00 4.02
160 161 1.048724 CCCGGAGCTAAGATGGTGGA 61.049 60.000 0.73 0.00 0.00 4.02
161 162 1.447643 CCCGGAGCTAAGATGGTGG 59.552 63.158 0.73 0.00 0.00 4.61
162 163 1.227674 GCCCGGAGCTAAGATGGTG 60.228 63.158 0.73 0.00 38.99 4.17
163 164 3.231298 GCCCGGAGCTAAGATGGT 58.769 61.111 0.73 0.00 38.99 3.55
172 173 3.851128 GTACCTGGAGCCCGGAGC 61.851 72.222 0.73 4.57 44.25 4.70
173 174 1.338136 AATGTACCTGGAGCCCGGAG 61.338 60.000 0.73 0.00 29.82 4.63
174 175 1.306654 AATGTACCTGGAGCCCGGA 60.307 57.895 0.73 0.00 29.82 5.14
175 176 1.153168 CAATGTACCTGGAGCCCGG 60.153 63.158 0.00 0.00 0.00 5.73
176 177 1.153168 CCAATGTACCTGGAGCCCG 60.153 63.158 0.00 0.00 35.85 6.13
177 178 1.453928 GCCAATGTACCTGGAGCCC 60.454 63.158 13.88 0.00 35.85 5.19
178 179 1.819632 CGCCAATGTACCTGGAGCC 60.820 63.158 13.88 0.00 35.85 4.70
179 180 1.819632 CCGCCAATGTACCTGGAGC 60.820 63.158 13.88 0.00 35.85 4.70
180 181 1.819632 GCCGCCAATGTACCTGGAG 60.820 63.158 13.88 10.63 35.85 3.86
181 182 2.270850 GCCGCCAATGTACCTGGA 59.729 61.111 13.88 0.00 35.85 3.86
182 183 2.045438 TGCCGCCAATGTACCTGG 60.045 61.111 6.71 6.71 36.99 4.45
183 184 1.078497 TCTGCCGCCAATGTACCTG 60.078 57.895 0.00 0.00 0.00 4.00
184 185 1.221840 CTCTGCCGCCAATGTACCT 59.778 57.895 0.00 0.00 0.00 3.08
185 186 1.819632 CCTCTGCCGCCAATGTACC 60.820 63.158 0.00 0.00 0.00 3.34
186 187 2.472909 GCCTCTGCCGCCAATGTAC 61.473 63.158 0.00 0.00 0.00 2.90
187 188 2.124736 GCCTCTGCCGCCAATGTA 60.125 61.111 0.00 0.00 0.00 2.29
188 189 3.866379 TTGCCTCTGCCGCCAATGT 62.866 57.895 0.00 0.00 36.33 2.71
189 190 3.063704 TTGCCTCTGCCGCCAATG 61.064 61.111 0.00 0.00 36.33 2.82
190 191 3.064324 GTTGCCTCTGCCGCCAAT 61.064 61.111 0.00 0.00 36.33 3.16
191 192 4.269523 AGTTGCCTCTGCCGCCAA 62.270 61.111 0.00 0.00 36.33 4.52
192 193 4.704833 GAGTTGCCTCTGCCGCCA 62.705 66.667 0.00 0.00 36.33 5.69
197 198 4.400961 AGCCGGAGTTGCCTCTGC 62.401 66.667 5.05 0.00 41.94 4.26
198 199 2.125350 GAGCCGGAGTTGCCTCTG 60.125 66.667 5.05 0.00 42.77 3.35
199 200 3.394836 GGAGCCGGAGTTGCCTCT 61.395 66.667 5.05 0.00 37.86 3.69
200 201 4.821589 CGGAGCCGGAGTTGCCTC 62.822 72.222 5.05 0.00 36.96 4.70
224 225 3.532155 CGAAGGAGGAGGCGGAGG 61.532 72.222 0.00 0.00 0.00 4.30
225 226 4.214327 GCGAAGGAGGAGGCGGAG 62.214 72.222 0.00 0.00 0.00 4.63
227 228 3.798954 GATGCGAAGGAGGAGGCGG 62.799 68.421 0.00 0.00 0.00 6.13
228 229 2.279784 GATGCGAAGGAGGAGGCG 60.280 66.667 0.00 0.00 0.00 5.52
229 230 2.110006 GGATGCGAAGGAGGAGGC 59.890 66.667 0.00 0.00 0.00 4.70
230 231 1.333636 ACTGGATGCGAAGGAGGAGG 61.334 60.000 0.00 0.00 0.00 4.30
231 232 0.539051 AACTGGATGCGAAGGAGGAG 59.461 55.000 0.00 0.00 0.00 3.69
232 233 0.537188 GAACTGGATGCGAAGGAGGA 59.463 55.000 0.00 0.00 0.00 3.71
233 234 0.807667 CGAACTGGATGCGAAGGAGG 60.808 60.000 0.00 0.00 0.00 4.30
234 235 0.108615 ACGAACTGGATGCGAAGGAG 60.109 55.000 0.00 0.00 0.00 3.69
235 236 0.108804 GACGAACTGGATGCGAAGGA 60.109 55.000 0.00 0.00 0.00 3.36
236 237 1.413767 CGACGAACTGGATGCGAAGG 61.414 60.000 0.00 0.00 0.00 3.46
237 238 0.456142 TCGACGAACTGGATGCGAAG 60.456 55.000 0.00 0.00 0.00 3.79
238 239 0.038983 TTCGACGAACTGGATGCGAA 60.039 50.000 6.10 0.00 35.69 4.70
239 240 0.038983 TTTCGACGAACTGGATGCGA 60.039 50.000 10.38 0.00 0.00 5.10
240 241 0.787787 TTTTCGACGAACTGGATGCG 59.212 50.000 10.38 0.00 0.00 4.73
241 242 1.464189 GCTTTTCGACGAACTGGATGC 60.464 52.381 10.38 6.00 0.00 3.91
242 243 1.201812 CGCTTTTCGACGAACTGGATG 60.202 52.381 10.38 0.00 41.67 3.51
243 244 1.068474 CGCTTTTCGACGAACTGGAT 58.932 50.000 10.38 0.00 41.67 3.41
244 245 1.554042 GCGCTTTTCGACGAACTGGA 61.554 55.000 10.38 0.00 41.67 3.86
245 246 1.154654 GCGCTTTTCGACGAACTGG 60.155 57.895 10.38 4.67 41.67 4.00
246 247 0.163788 ATGCGCTTTTCGACGAACTG 59.836 50.000 10.38 7.19 41.67 3.16
247 248 0.438830 GATGCGCTTTTCGACGAACT 59.561 50.000 10.38 0.00 41.67 3.01
248 249 0.518559 GGATGCGCTTTTCGACGAAC 60.519 55.000 10.38 0.00 41.67 3.95
249 250 1.785321 GGATGCGCTTTTCGACGAA 59.215 52.632 9.73 6.10 41.67 3.85
250 251 2.441378 CGGATGCGCTTTTCGACGA 61.441 57.895 9.73 0.00 41.67 4.20
251 252 2.020016 CGGATGCGCTTTTCGACG 59.980 61.111 9.73 0.00 41.67 5.12
252 253 1.058903 GACGGATGCGCTTTTCGAC 59.941 57.895 16.75 8.18 41.67 4.20
253 254 1.076533 GAGACGGATGCGCTTTTCGA 61.077 55.000 16.75 0.00 41.67 3.71
254 255 1.345176 GAGACGGATGCGCTTTTCG 59.655 57.895 9.73 9.66 42.12 3.46
255 256 1.716172 GGAGACGGATGCGCTTTTC 59.284 57.895 9.73 2.73 0.00 2.29
256 257 3.890674 GGAGACGGATGCGCTTTT 58.109 55.556 9.73 0.00 0.00 2.27
268 269 0.526524 CGAGAACTGGATGCGGAGAC 60.527 60.000 0.00 0.00 0.00 3.36
269 270 0.965866 ACGAGAACTGGATGCGGAGA 60.966 55.000 0.00 0.00 0.00 3.71
270 271 0.526524 GACGAGAACTGGATGCGGAG 60.527 60.000 0.00 0.00 0.00 4.63
271 272 1.511305 GACGAGAACTGGATGCGGA 59.489 57.895 0.00 0.00 0.00 5.54
272 273 1.519455 GGACGAGAACTGGATGCGG 60.519 63.158 0.00 0.00 0.00 5.69
273 274 0.803768 CAGGACGAGAACTGGATGCG 60.804 60.000 0.00 0.00 0.00 4.73
274 275 1.086634 GCAGGACGAGAACTGGATGC 61.087 60.000 0.00 0.00 35.30 3.91
275 276 0.247460 TGCAGGACGAGAACTGGATG 59.753 55.000 0.00 0.00 35.30 3.51
276 277 1.137872 GATGCAGGACGAGAACTGGAT 59.862 52.381 0.00 0.00 46.42 3.41
277 278 0.532573 GATGCAGGACGAGAACTGGA 59.467 55.000 0.00 0.00 39.38 3.86
282 283 1.254975 TTCCGGATGCAGGACGAGAA 61.255 55.000 4.15 7.75 37.53 2.87
287 288 2.892425 CGCTTCCGGATGCAGGAC 60.892 66.667 33.72 11.43 37.53 3.85
313 315 4.279169 AGACCACATATACAATGGCAATGC 59.721 41.667 1.63 0.00 36.96 3.56
315 317 5.893255 ACAAGACCACATATACAATGGCAAT 59.107 36.000 0.00 0.00 36.96 3.56
318 320 5.590259 AGAACAAGACCACATATACAATGGC 59.410 40.000 0.00 0.00 36.96 4.40
319 321 6.458751 GCAGAACAAGACCACATATACAATGG 60.459 42.308 0.00 0.00 39.57 3.16
323 325 4.513442 GGCAGAACAAGACCACATATACA 58.487 43.478 0.00 0.00 0.00 2.29
329 331 1.227823 CCGGCAGAACAAGACCACA 60.228 57.895 0.00 0.00 0.00 4.17
330 332 1.966451 CCCGGCAGAACAAGACCAC 60.966 63.158 0.00 0.00 0.00 4.16
333 335 3.056328 GGCCCGGCAGAACAAGAC 61.056 66.667 12.58 0.00 0.00 3.01
335 337 2.361610 ATGGCCCGGCAGAACAAG 60.362 61.111 12.58 0.00 0.00 3.16
343 345 3.877450 TCTCCATCATGGCCCGGC 61.877 66.667 0.00 0.00 37.47 6.13
345 347 1.227764 CTGTCTCCATCATGGCCCG 60.228 63.158 0.00 0.00 37.47 6.13
355 357 3.062466 CCTCGCCGTCTGTCTCCA 61.062 66.667 0.00 0.00 0.00 3.86
357 359 0.456995 CTTTCCTCGCCGTCTGTCTC 60.457 60.000 0.00 0.00 0.00 3.36
364 366 0.323178 TCTACCTCTTTCCTCGCCGT 60.323 55.000 0.00 0.00 0.00 5.68
380 382 5.124138 GTCCAAGTCTCTTCATCTTCGTCTA 59.876 44.000 0.00 0.00 0.00 2.59
385 387 3.516615 CCGTCCAAGTCTCTTCATCTTC 58.483 50.000 0.00 0.00 0.00 2.87
386 388 2.234908 CCCGTCCAAGTCTCTTCATCTT 59.765 50.000 0.00 0.00 0.00 2.40
390 392 0.471211 ACCCCGTCCAAGTCTCTTCA 60.471 55.000 0.00 0.00 0.00 3.02
398 400 1.293498 CAGTCTGACCCCGTCCAAG 59.707 63.158 3.76 0.00 0.00 3.61
399 401 2.214216 CCAGTCTGACCCCGTCCAA 61.214 63.158 3.76 0.00 0.00 3.53
408 410 3.775654 CCGAGCCCCCAGTCTGAC 61.776 72.222 0.00 0.00 0.00 3.51
415 417 3.984186 CTCCTTCTCCGAGCCCCCA 62.984 68.421 0.00 0.00 0.00 4.96
418 420 1.681486 CTTCCTCCTTCTCCGAGCCC 61.681 65.000 0.00 0.00 0.00 5.19
422 424 2.103373 CACATCTTCCTCCTTCTCCGA 58.897 52.381 0.00 0.00 0.00 4.55
424 426 3.103742 AGTCACATCTTCCTCCTTCTCC 58.896 50.000 0.00 0.00 0.00 3.71
425 427 5.163457 CCTTAGTCACATCTTCCTCCTTCTC 60.163 48.000 0.00 0.00 0.00 2.87
428 430 3.198853 GCCTTAGTCACATCTTCCTCCTT 59.801 47.826 0.00 0.00 0.00 3.36
433 438 2.501723 TCTGGCCTTAGTCACATCTTCC 59.498 50.000 3.32 0.00 0.00 3.46
447 452 3.710722 CACGGCTTCCTCTGGCCT 61.711 66.667 3.32 0.00 45.57 5.19
498 503 3.073101 GGGGTTACTCCGGCTCGT 61.073 66.667 0.00 0.00 37.00 4.18
507 512 9.825706 TTTACCATTACAAATAAAGGGGTTACT 57.174 29.630 0.00 0.00 34.08 2.24
511 516 7.727578 CCTTTACCATTACAAATAAAGGGGT 57.272 36.000 12.01 0.00 45.26 4.95
516 521 9.303116 TCTTGAGCCTTTACCATTACAAATAAA 57.697 29.630 0.00 0.00 0.00 1.40
517 522 8.871629 TCTTGAGCCTTTACCATTACAAATAA 57.128 30.769 0.00 0.00 0.00 1.40
518 523 8.736244 GTTCTTGAGCCTTTACCATTACAAATA 58.264 33.333 0.00 0.00 0.00 1.40
519 524 7.232534 TGTTCTTGAGCCTTTACCATTACAAAT 59.767 33.333 0.00 0.00 0.00 2.32
520 525 6.547880 TGTTCTTGAGCCTTTACCATTACAAA 59.452 34.615 0.00 0.00 0.00 2.83
521 526 6.016610 GTGTTCTTGAGCCTTTACCATTACAA 60.017 38.462 0.00 0.00 0.00 2.41
522 527 5.472137 GTGTTCTTGAGCCTTTACCATTACA 59.528 40.000 0.00 0.00 0.00 2.41
523 528 5.106277 GGTGTTCTTGAGCCTTTACCATTAC 60.106 44.000 0.00 0.00 0.00 1.89
524 529 5.007682 GGTGTTCTTGAGCCTTTACCATTA 58.992 41.667 0.00 0.00 0.00 1.90
525 530 3.826729 GGTGTTCTTGAGCCTTTACCATT 59.173 43.478 0.00 0.00 0.00 3.16
526 531 3.181434 TGGTGTTCTTGAGCCTTTACCAT 60.181 43.478 0.00 0.00 32.47 3.55
527 532 2.173782 TGGTGTTCTTGAGCCTTTACCA 59.826 45.455 0.00 0.00 34.82 3.25
528 533 2.858745 TGGTGTTCTTGAGCCTTTACC 58.141 47.619 0.00 0.00 0.00 2.85
529 534 5.453567 AAATGGTGTTCTTGAGCCTTTAC 57.546 39.130 0.00 0.00 0.00 2.01
530 535 4.522789 GGAAATGGTGTTCTTGAGCCTTTA 59.477 41.667 0.00 0.00 0.00 1.85
531 536 3.321968 GGAAATGGTGTTCTTGAGCCTTT 59.678 43.478 0.00 0.00 0.00 3.11
532 537 2.893489 GGAAATGGTGTTCTTGAGCCTT 59.107 45.455 0.00 0.00 0.00 4.35
533 538 2.158475 TGGAAATGGTGTTCTTGAGCCT 60.158 45.455 0.00 0.00 0.00 4.58
534 539 2.029918 GTGGAAATGGTGTTCTTGAGCC 60.030 50.000 0.00 0.00 0.00 4.70
535 540 2.622942 TGTGGAAATGGTGTTCTTGAGC 59.377 45.455 0.00 0.00 0.00 4.26
536 541 3.885297 ACTGTGGAAATGGTGTTCTTGAG 59.115 43.478 0.00 0.00 0.00 3.02
537 542 3.897239 ACTGTGGAAATGGTGTTCTTGA 58.103 40.909 0.00 0.00 0.00 3.02
538 543 4.097741 TCAACTGTGGAAATGGTGTTCTTG 59.902 41.667 0.00 0.00 0.00 3.02
539 544 4.277476 TCAACTGTGGAAATGGTGTTCTT 58.723 39.130 0.00 0.00 0.00 2.52
540 545 3.885297 CTCAACTGTGGAAATGGTGTTCT 59.115 43.478 0.00 0.00 0.00 3.01
541 546 3.004734 CCTCAACTGTGGAAATGGTGTTC 59.995 47.826 0.00 0.00 0.00 3.18
542 547 2.958355 CCTCAACTGTGGAAATGGTGTT 59.042 45.455 0.00 0.00 0.00 3.32
543 548 2.586425 CCTCAACTGTGGAAATGGTGT 58.414 47.619 0.00 0.00 0.00 4.16
544 549 1.270550 GCCTCAACTGTGGAAATGGTG 59.729 52.381 1.98 0.00 0.00 4.17
545 550 1.620822 GCCTCAACTGTGGAAATGGT 58.379 50.000 1.98 0.00 0.00 3.55
546 551 0.523072 CGCCTCAACTGTGGAAATGG 59.477 55.000 1.98 0.00 0.00 3.16
551 556 3.454587 AACGCGCCTCAACTGTGGA 62.455 57.895 5.73 0.00 0.00 4.02
566 571 3.902063 CGGTGCGATCGCTGAACG 61.902 66.667 37.01 28.96 45.62 3.95
572 577 3.330853 GATGGACGGTGCGATCGC 61.331 66.667 32.48 32.48 42.35 4.58
587 592 0.465705 ATGCATCGGTGTCTTCGGAT 59.534 50.000 0.00 0.00 0.00 4.18
658 664 2.185350 CCGGTGCTCTTCTGCGAT 59.815 61.111 0.00 0.00 35.36 4.58
659 665 3.303135 ACCGGTGCTCTTCTGCGA 61.303 61.111 6.12 0.00 35.36 5.10
660 666 3.114616 CACCGGTGCTCTTCTGCG 61.115 66.667 24.02 0.00 35.36 5.18
701 711 2.358737 GAGTGGGAACGTGGGCTG 60.359 66.667 0.00 0.00 0.00 4.85
747 757 3.782889 AAAGGAGTTGAACAAGTGTGC 57.217 42.857 0.00 0.00 0.00 4.57
749 759 7.827729 AGTTAAGTAAAGGAGTTGAACAAGTGT 59.172 33.333 0.00 0.00 0.00 3.55
751 761 7.224167 CGAGTTAAGTAAAGGAGTTGAACAAGT 59.776 37.037 0.00 0.00 0.00 3.16
752 762 7.564988 CGAGTTAAGTAAAGGAGTTGAACAAG 58.435 38.462 0.00 0.00 0.00 3.16
754 764 5.464389 GCGAGTTAAGTAAAGGAGTTGAACA 59.536 40.000 0.00 0.00 0.00 3.18
755 765 5.464389 TGCGAGTTAAGTAAAGGAGTTGAAC 59.536 40.000 0.00 0.00 0.00 3.18
793 831 2.065799 AGAATGAGAGGGGGTTTGTGT 58.934 47.619 0.00 0.00 0.00 3.72
800 838 1.488393 GTGGAGAAGAATGAGAGGGGG 59.512 57.143 0.00 0.00 0.00 5.40
803 841 2.100584 CGGAGTGGAGAAGAATGAGAGG 59.899 54.545 0.00 0.00 0.00 3.69
807 845 0.537188 GCCGGAGTGGAGAAGAATGA 59.463 55.000 5.05 0.00 42.00 2.57
808 846 0.462759 GGCCGGAGTGGAGAAGAATG 60.463 60.000 5.05 0.00 42.00 2.67
809 847 0.909610 TGGCCGGAGTGGAGAAGAAT 60.910 55.000 5.05 0.00 42.00 2.40
810 848 1.125093 TTGGCCGGAGTGGAGAAGAA 61.125 55.000 5.05 0.00 42.00 2.52
811 849 1.535444 TTGGCCGGAGTGGAGAAGA 60.535 57.895 5.05 0.00 42.00 2.87
814 852 3.706373 GCTTGGCCGGAGTGGAGA 61.706 66.667 5.05 0.00 42.00 3.71
847 885 4.083862 GAGTGGGGTGTCGGGCTC 62.084 72.222 0.00 0.00 0.00 4.70
907 954 1.515952 CTGAGGCTGAGCGAGTTCG 60.516 63.158 0.00 0.00 43.27 3.95
908 955 1.809209 GCTGAGGCTGAGCGAGTTC 60.809 63.158 10.90 0.00 35.22 3.01
909 956 2.264166 GCTGAGGCTGAGCGAGTT 59.736 61.111 10.90 0.00 35.22 3.01
910 957 3.768922 GGCTGAGGCTGAGCGAGT 61.769 66.667 19.63 0.00 37.32 4.18
911 958 4.527583 GGGCTGAGGCTGAGCGAG 62.528 72.222 19.63 0.00 37.32 5.03
1045 1092 3.077556 GAGGAGGAAGCAGGCGGA 61.078 66.667 0.00 0.00 0.00 5.54
1071 1118 2.123640 GGGACGAGGAGGAGGAGG 60.124 72.222 0.00 0.00 0.00 4.30
1072 1119 1.000486 TTGGGACGAGGAGGAGGAG 60.000 63.158 0.00 0.00 0.00 3.69
1073 1120 1.305046 GTTGGGACGAGGAGGAGGA 60.305 63.158 0.00 0.00 0.00 3.71
1115 1177 4.034258 GCACGACGTGACGGAGGA 62.034 66.667 31.08 0.00 35.23 3.71
1149 1211 3.062466 GCGGCAAAGAAGGGGGAC 61.062 66.667 0.00 0.00 0.00 4.46
1722 1805 3.041940 GCCACCCAGACGTTGACG 61.042 66.667 1.41 1.41 46.33 4.35
1743 1826 2.288458 GACGTAGATGGAGACGAAGGAG 59.712 54.545 0.89 0.00 41.60 3.69
1854 1965 1.267932 GGAGGTACGTCATCTTCGTCG 60.268 57.143 16.80 0.00 41.72 5.12
1860 1974 1.043673 GCAGGGGAGGTACGTCATCT 61.044 60.000 16.80 10.22 0.00 2.90
1863 1977 2.682494 GGCAGGGGAGGTACGTCA 60.682 66.667 16.80 0.00 0.00 4.35
1925 2045 1.630369 ACAAGAGGTAATGCAGGCAGA 59.370 47.619 0.00 0.00 0.00 4.26
2096 2223 2.293318 TGGTGCTGGCGAGAGGATT 61.293 57.895 0.00 0.00 0.00 3.01
2103 2230 4.624364 CTGGTGTGGTGCTGGCGA 62.624 66.667 0.00 0.00 0.00 5.54
2151 2286 2.120718 AACAGGAGCCCGAGGACT 59.879 61.111 0.00 0.00 0.00 3.85
2304 2462 3.151710 TACCCGATCGCCACCAGG 61.152 66.667 10.32 6.95 38.23 4.45
2664 2845 2.563261 AGGCGAGGTAGATGACGATA 57.437 50.000 0.00 0.00 0.00 2.92
2735 2920 2.580867 GCTACTGTGGCGCGAGAG 60.581 66.667 15.05 15.05 0.00 3.20
2736 2921 2.428960 TTTGCTACTGTGGCGCGAGA 62.429 55.000 12.10 0.00 0.00 4.04
2737 2922 1.959899 CTTTGCTACTGTGGCGCGAG 61.960 60.000 12.10 0.00 0.00 5.03
2754 2939 0.321475 GGAGCAGAGCAGCTTGTCTT 60.321 55.000 0.00 0.00 46.75 3.01
2774 3021 2.112928 ACAGTGCCGCCATTGACA 59.887 55.556 0.00 0.00 33.37 3.58
2818 3068 4.141413 CCATGTATTTGTCTCCCTCCATCA 60.141 45.833 0.00 0.00 0.00 3.07
2828 3078 6.430308 GCATCTGATGATCCATGTATTTGTCT 59.570 38.462 21.30 0.00 0.00 3.41
2833 3083 6.304624 ACAAGCATCTGATGATCCATGTATT 58.695 36.000 21.30 0.00 0.00 1.89
2899 3157 2.172717 ACTAGCTAATCCACCGGCAATT 59.827 45.455 0.00 1.05 0.00 2.32
2903 3164 0.249911 CCACTAGCTAATCCACCGGC 60.250 60.000 0.00 0.00 0.00 6.13
3114 3426 1.338337 ACATCCAGATGATCGGTCGAC 59.662 52.381 14.42 7.13 41.20 4.20
3119 3431 1.664302 CGACGACATCCAGATGATCGG 60.664 57.143 23.58 12.00 41.74 4.18
3145 3488 1.181098 AAACTGCCGGCATGCTTTCT 61.181 50.000 32.87 7.56 0.00 2.52
3160 3503 1.326951 AACACAAGCCGGGCAAAACT 61.327 50.000 23.09 0.00 0.00 2.66
3176 3519 5.689514 CGAGGCAAACAATTATCAACAAACA 59.310 36.000 0.00 0.00 0.00 2.83
3177 3520 5.689961 ACGAGGCAAACAATTATCAACAAAC 59.310 36.000 0.00 0.00 0.00 2.93
3178 3521 5.837437 ACGAGGCAAACAATTATCAACAAA 58.163 33.333 0.00 0.00 0.00 2.83
3179 3522 5.009110 TGACGAGGCAAACAATTATCAACAA 59.991 36.000 0.00 0.00 0.00 2.83
3249 3593 5.238650 CGTTGTCCTAGACTTGGATTTTGTT 59.761 40.000 8.95 0.00 35.87 2.83
3292 3636 2.826777 AATCGGGCAACTGGGAGCAG 62.827 60.000 0.00 0.00 45.79 4.24
3295 3639 1.452108 GGAATCGGGCAACTGGGAG 60.452 63.158 0.00 0.00 45.79 4.30
3322 3682 0.449388 GGCCTCGCAAGTCTGATTTG 59.551 55.000 8.38 8.38 39.48 2.32
3391 3751 3.685139 TCAAGAAAGGAGAATCGTGCT 57.315 42.857 0.00 0.00 34.37 4.40
3395 3755 3.311871 CCAGCATCAAGAAAGGAGAATCG 59.688 47.826 0.00 0.00 34.37 3.34
3404 3764 3.371273 CCTCCATCTCCAGCATCAAGAAA 60.371 47.826 0.00 0.00 0.00 2.52
3418 3778 4.230041 ACAGTGGTACTACTACCTCCATCT 59.770 45.833 11.97 0.00 42.94 2.90
3427 3787 2.230508 GCACAGCACAGTGGTACTACTA 59.769 50.000 11.97 0.00 39.87 1.82
3439 3801 1.243342 GCCATAACCAGCACAGCACA 61.243 55.000 0.00 0.00 0.00 4.57
3442 3804 4.001248 TGCCATAACCAGCACAGC 57.999 55.556 0.00 0.00 33.08 4.40
3450 3812 2.548057 CGGATATGTGTGTGCCATAACC 59.452 50.000 0.00 0.00 35.50 2.85
3487 3854 0.590195 CACAGGAGCAAAGCACAGAC 59.410 55.000 0.00 0.00 0.00 3.51
3489 3856 0.820891 ACCACAGGAGCAAAGCACAG 60.821 55.000 0.00 0.00 0.00 3.66
3490 3857 0.472044 TACCACAGGAGCAAAGCACA 59.528 50.000 0.00 0.00 0.00 4.57
3506 3873 5.221009 GCATGTGTACAGAGTAGGTAGTACC 60.221 48.000 11.73 11.73 36.81 3.34
3512 3879 2.761208 GAGGCATGTGTACAGAGTAGGT 59.239 50.000 0.00 0.00 0.00 3.08
3515 3882 1.749063 CGGAGGCATGTGTACAGAGTA 59.251 52.381 0.00 0.00 0.00 2.59
3516 3883 0.532573 CGGAGGCATGTGTACAGAGT 59.467 55.000 0.00 0.00 0.00 3.24
3517 3884 0.179100 CCGGAGGCATGTGTACAGAG 60.179 60.000 0.00 0.00 46.14 3.35
3518 3885 1.897423 CCGGAGGCATGTGTACAGA 59.103 57.895 0.00 0.00 46.14 3.41
3519 3886 4.521075 CCGGAGGCATGTGTACAG 57.479 61.111 0.00 0.00 46.14 2.74
3584 3955 2.126189 GGTCCTCGAACCGAACCG 60.126 66.667 0.00 0.00 34.74 4.44
3618 3989 2.159517 GGCAGCTTCTACAATTCCGTTG 60.160 50.000 0.00 0.00 43.64 4.10
3619 3990 2.084546 GGCAGCTTCTACAATTCCGTT 58.915 47.619 0.00 0.00 0.00 4.44
3620 3991 1.679032 GGGCAGCTTCTACAATTCCGT 60.679 52.381 0.00 0.00 0.00 4.69
3621 3992 1.017387 GGGCAGCTTCTACAATTCCG 58.983 55.000 0.00 0.00 0.00 4.30
3622 3993 1.340991 TGGGGCAGCTTCTACAATTCC 60.341 52.381 0.00 0.00 0.00 3.01
3623 3994 2.128771 TGGGGCAGCTTCTACAATTC 57.871 50.000 0.00 0.00 0.00 2.17
3624 3995 2.171003 GTTGGGGCAGCTTCTACAATT 58.829 47.619 0.00 0.00 0.00 2.32
3625 3996 1.616994 GGTTGGGGCAGCTTCTACAAT 60.617 52.381 0.00 0.00 0.00 2.71
3626 3997 0.251165 GGTTGGGGCAGCTTCTACAA 60.251 55.000 0.00 0.00 0.00 2.41
3627 3998 1.378762 GGTTGGGGCAGCTTCTACA 59.621 57.895 0.00 0.00 0.00 2.74
3628 3999 1.745489 CGGTTGGGGCAGCTTCTAC 60.745 63.158 0.00 0.00 0.00 2.59
3629 4000 2.668632 CGGTTGGGGCAGCTTCTA 59.331 61.111 0.00 0.00 0.00 2.10
3645 4016 2.125552 TCCAAGATCACCGCAGCG 60.126 61.111 8.18 8.18 0.00 5.18
3646 4017 0.955428 TTGTCCAAGATCACCGCAGC 60.955 55.000 0.00 0.00 0.00 5.25
3647 4018 1.522668 TTTGTCCAAGATCACCGCAG 58.477 50.000 0.00 0.00 0.00 5.18
3648 4019 1.606668 GTTTTGTCCAAGATCACCGCA 59.393 47.619 0.00 0.00 0.00 5.69
3649 4020 1.606668 TGTTTTGTCCAAGATCACCGC 59.393 47.619 0.00 0.00 0.00 5.68
3650 4021 3.550030 GGTTGTTTTGTCCAAGATCACCG 60.550 47.826 0.00 0.00 0.00 4.94
3651 4022 3.383185 TGGTTGTTTTGTCCAAGATCACC 59.617 43.478 0.00 0.00 0.00 4.02
3652 4023 4.647424 TGGTTGTTTTGTCCAAGATCAC 57.353 40.909 0.00 0.00 0.00 3.06
3653 4024 4.892345 TGATGGTTGTTTTGTCCAAGATCA 59.108 37.500 0.00 0.00 34.80 2.92
3654 4025 5.452078 TGATGGTTGTTTTGTCCAAGATC 57.548 39.130 0.00 0.00 34.80 2.75
3655 4026 5.867903 TTGATGGTTGTTTTGTCCAAGAT 57.132 34.783 0.00 0.00 34.80 2.40
3656 4027 5.599732 CATTGATGGTTGTTTTGTCCAAGA 58.400 37.500 0.00 0.00 34.80 3.02
3657 4028 4.211794 GCATTGATGGTTGTTTTGTCCAAG 59.788 41.667 0.00 0.00 34.80 3.61
3658 4029 4.125703 GCATTGATGGTTGTTTTGTCCAA 58.874 39.130 0.00 0.00 34.80 3.53
3659 4030 3.133542 TGCATTGATGGTTGTTTTGTCCA 59.866 39.130 0.00 0.00 35.64 4.02
3660 4031 3.726607 TGCATTGATGGTTGTTTTGTCC 58.273 40.909 0.00 0.00 0.00 4.02
3661 4032 5.927954 AATGCATTGATGGTTGTTTTGTC 57.072 34.783 12.09 0.00 0.00 3.18
3662 4033 6.286758 TGTAATGCATTGATGGTTGTTTTGT 58.713 32.000 22.27 0.00 0.00 2.83
3663 4034 6.782298 TGTAATGCATTGATGGTTGTTTTG 57.218 33.333 22.27 0.00 0.00 2.44
3664 4035 6.310956 CGATGTAATGCATTGATGGTTGTTTT 59.689 34.615 22.27 0.00 40.64 2.43
3665 4036 5.806502 CGATGTAATGCATTGATGGTTGTTT 59.193 36.000 22.27 0.00 40.64 2.83
3666 4037 5.105797 ACGATGTAATGCATTGATGGTTGTT 60.106 36.000 22.27 0.00 40.64 2.83
3667 4038 4.398988 ACGATGTAATGCATTGATGGTTGT 59.601 37.500 22.27 9.93 40.64 3.32
3668 4039 4.923893 ACGATGTAATGCATTGATGGTTG 58.076 39.130 22.27 9.37 40.64 3.77
3669 4040 5.277974 GCTACGATGTAATGCATTGATGGTT 60.278 40.000 22.27 5.07 40.64 3.67
3670 4041 4.214119 GCTACGATGTAATGCATTGATGGT 59.786 41.667 22.27 19.86 40.64 3.55
3671 4042 4.667415 CGCTACGATGTAATGCATTGATGG 60.667 45.833 22.27 15.73 40.64 3.51
3672 4043 4.388790 CGCTACGATGTAATGCATTGATG 58.611 43.478 22.27 9.38 40.64 3.07
3673 4044 3.433274 CCGCTACGATGTAATGCATTGAT 59.567 43.478 22.27 13.19 40.64 2.57
3674 4045 2.799978 CCGCTACGATGTAATGCATTGA 59.200 45.455 22.27 8.74 40.64 2.57
3675 4046 2.799978 TCCGCTACGATGTAATGCATTG 59.200 45.455 22.27 7.17 43.18 2.82
3676 4047 2.800544 GTCCGCTACGATGTAATGCATT 59.199 45.455 17.56 17.56 38.06 3.56
3677 4048 2.404215 GTCCGCTACGATGTAATGCAT 58.596 47.619 0.00 0.00 41.24 3.96
3678 4049 1.537348 GGTCCGCTACGATGTAATGCA 60.537 52.381 0.00 0.00 0.00 3.96
3679 4050 1.137513 GGTCCGCTACGATGTAATGC 58.862 55.000 0.00 0.00 0.00 3.56
3680 4051 1.002142 TCGGTCCGCTACGATGTAATG 60.002 52.381 6.34 0.00 33.69 1.90
3681 4052 1.311859 TCGGTCCGCTACGATGTAAT 58.688 50.000 6.34 0.00 33.69 1.89
3682 4053 1.311859 ATCGGTCCGCTACGATGTAA 58.688 50.000 6.34 0.00 46.83 2.41
3683 4054 3.011085 ATCGGTCCGCTACGATGTA 57.989 52.632 6.34 0.00 46.83 2.29
3684 4055 3.837578 ATCGGTCCGCTACGATGT 58.162 55.556 6.34 0.00 46.83 3.06
3687 4058 1.093972 TTTGTATCGGTCCGCTACGA 58.906 50.000 17.86 14.37 43.85 3.43
3688 4059 1.194495 GTTTGTATCGGTCCGCTACG 58.806 55.000 17.86 0.00 32.21 3.51
3689 4060 1.194495 CGTTTGTATCGGTCCGCTAC 58.806 55.000 16.61 16.61 0.00 3.58
3690 4061 0.526096 GCGTTTGTATCGGTCCGCTA 60.526 55.000 6.34 0.00 38.22 4.26
3691 4062 1.808390 GCGTTTGTATCGGTCCGCT 60.808 57.895 6.34 0.00 38.22 5.52
3692 4063 1.426041 ATGCGTTTGTATCGGTCCGC 61.426 55.000 6.34 0.00 41.34 5.54
3693 4064 0.300491 CATGCGTTTGTATCGGTCCG 59.700 55.000 4.39 4.39 0.00 4.79
3694 4065 0.027586 GCATGCGTTTGTATCGGTCC 59.972 55.000 0.00 0.00 0.00 4.46
3695 4066 0.027586 GGCATGCGTTTGTATCGGTC 59.972 55.000 12.44 0.00 0.00 4.79
3696 4067 0.675208 TGGCATGCGTTTGTATCGGT 60.675 50.000 12.44 0.00 0.00 4.69
3697 4068 0.248054 GTGGCATGCGTTTGTATCGG 60.248 55.000 12.44 0.00 0.00 4.18
3698 4069 0.248054 GGTGGCATGCGTTTGTATCG 60.248 55.000 12.44 0.00 0.00 2.92
3699 4070 0.808125 TGGTGGCATGCGTTTGTATC 59.192 50.000 12.44 0.00 0.00 2.24
3700 4071 0.525761 GTGGTGGCATGCGTTTGTAT 59.474 50.000 12.44 0.00 0.00 2.29
3701 4072 1.519751 GGTGGTGGCATGCGTTTGTA 61.520 55.000 12.44 0.00 0.00 2.41
3702 4073 2.727544 GTGGTGGCATGCGTTTGT 59.272 55.556 12.44 0.00 0.00 2.83
3703 4074 2.049248 GGTGGTGGCATGCGTTTG 60.049 61.111 12.44 0.00 0.00 2.93
3704 4075 3.669344 CGGTGGTGGCATGCGTTT 61.669 61.111 12.44 0.00 0.00 3.60
3709 4080 4.041917 GTGTGCGGTGGTGGCATG 62.042 66.667 0.00 0.00 43.19 4.06
3710 4081 3.940174 TATTGTGTGCGGTGGTGGCAT 62.940 52.381 0.00 0.00 43.19 4.40
3711 4082 2.682582 TATTGTGTGCGGTGGTGGCA 62.683 55.000 0.00 0.00 38.25 4.92
3712 4083 1.969064 TATTGTGTGCGGTGGTGGC 60.969 57.895 0.00 0.00 0.00 5.01
3713 4084 4.388229 TATTGTGTGCGGTGGTGG 57.612 55.556 0.00 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.