Multiple sequence alignment - TraesCS4D01G012800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G012800 chr4D 100.000 8102 0 0 1 8102 6016847 6024948 0.000000e+00 14962
1 TraesCS4D01G012800 chr4D 80.930 645 77 21 1 626 5954435 5955052 1.230000e-127 468
2 TraesCS4D01G012800 chr4D 97.638 127 3 0 5823 5949 614527 614653 1.370000e-52 219
3 TraesCS4D01G012800 chr4D 97.638 127 3 0 5823 5949 391290423 391290297 1.370000e-52 219
4 TraesCS4D01G012800 chr4B 95.366 4553 179 11 911 5445 10557214 10561752 0.000000e+00 7210
5 TraesCS4D01G012800 chr4B 88.792 1258 80 18 6332 7555 10562716 10563946 0.000000e+00 1485
6 TraesCS4D01G012800 chr4B 96.372 441 15 1 5385 5824 10561752 10562192 0.000000e+00 725
7 TraesCS4D01G012800 chr4B 95.325 385 13 4 5948 6330 10562191 10562572 2.500000e-169 606
8 TraesCS4D01G012800 chr4B 84.561 570 70 8 1 562 10556092 10556651 4.270000e-152 549
9 TraesCS4D01G012800 chr4B 96.040 101 3 1 7669 7768 10564267 10564367 6.510000e-36 163
10 TraesCS4D01G012800 chr4A 96.338 3031 92 7 806 3827 597694905 597691885 0.000000e+00 4964
11 TraesCS4D01G012800 chr4A 95.482 1837 56 12 5948 7768 597689811 597687986 0.000000e+00 2907
12 TraesCS4D01G012800 chr4A 94.008 1552 67 10 4289 5824 597691351 597689810 0.000000e+00 2327
13 TraesCS4D01G012800 chr4A 83.353 859 68 22 1 814 597696135 597695307 0.000000e+00 725
14 TraesCS4D01G012800 chr4A 90.397 479 13 3 3821 4287 597691846 597691389 4.180000e-167 599
15 TraesCS4D01G012800 chrUn 96.947 131 4 0 5820 5950 87272100 87272230 3.810000e-53 220
16 TraesCS4D01G012800 chr6D 97.638 127 3 0 5823 5949 126108388 126108262 1.370000e-52 219
17 TraesCS4D01G012800 chr6D 96.183 131 5 0 5819 5949 52696766 52696636 1.770000e-51 215
18 TraesCS4D01G012800 chr2B 96.923 130 4 0 5820 5949 677806375 677806504 1.370000e-52 219
19 TraesCS4D01G012800 chr1D 97.638 127 3 0 5823 5949 127143402 127143276 1.370000e-52 219
20 TraesCS4D01G012800 chr6B 95.588 136 5 1 5820 5954 209249731 209249866 4.920000e-52 217
21 TraesCS4D01G012800 chr5A 96.241 133 4 1 5823 5954 521007341 521007473 4.920000e-52 217


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G012800 chr4D 6016847 6024948 8101 False 14962.000000 14962 100.000000 1 8102 1 chr4D.!!$F3 8101
1 TraesCS4D01G012800 chr4D 5954435 5955052 617 False 468.000000 468 80.930000 1 626 1 chr4D.!!$F2 625
2 TraesCS4D01G012800 chr4B 10556092 10564367 8275 False 1789.666667 7210 92.742667 1 7768 6 chr4B.!!$F1 7767
3 TraesCS4D01G012800 chr4A 597687986 597696135 8149 True 2304.400000 4964 91.915600 1 7768 5 chr4A.!!$R1 7767

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
172 173 0.321564 CCCTCACATTCTTGCGACCA 60.322 55.000 0.00 0.00 0.00 4.02 F
1866 2360 0.179100 ATGTCTTCTGGTCCGATGCG 60.179 55.000 0.00 0.00 0.00 4.73 F
2097 2591 0.543174 ACCCTGTCTCTCTCACCACC 60.543 60.000 0.00 0.00 0.00 4.61 F
2696 3190 0.755686 GTGGCAGAGGAGGATGGTAG 59.244 60.000 0.00 0.00 0.00 3.18 F
3432 3926 1.070914 TCGGGTGCACATAACTCAACA 59.929 47.619 20.43 0.00 0.00 3.33 F
4492 5097 1.201647 CATTGTTTCCTCAGCTGGCTG 59.798 52.381 15.13 15.58 44.86 4.85 F
5844 6514 0.042731 TCCCTCCGTCCCAGAATTCT 59.957 55.000 0.88 0.88 0.00 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1878 2372 0.036306 CCCCAAAGTCCTTGTACGCT 59.964 55.000 0.00 0.0 32.65 5.07 R
3432 3926 0.892755 CAGTTGCCATGTTGCCATCT 59.107 50.000 0.00 0.0 0.00 2.90 R
3558 4052 1.874231 TCGTTAATTTGTGAAGCGGCA 59.126 42.857 1.45 0.0 0.00 5.69 R
4224 4781 1.583054 AAGAGAACAGCACCACGAAC 58.417 50.000 0.00 0.0 0.00 3.95 R
5156 5761 1.561542 CAGTATTCCAGACCCTTGCCT 59.438 52.381 0.00 0.0 0.00 4.75 R
5933 6603 1.569548 AGATCTACTCCTTCCGTCCCA 59.430 52.381 0.00 0.0 0.00 4.37 R
7832 8889 0.253327 GGAGCCCGTCCTCTGAAAAT 59.747 55.000 0.46 0.0 42.99 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
151 152 2.159043 TGCAACTGCTCTATACAGCCTC 60.159 50.000 2.95 0.00 42.66 4.70
172 173 0.321564 CCCTCACATTCTTGCGACCA 60.322 55.000 0.00 0.00 0.00 4.02
177 178 3.002791 TCACATTCTTGCGACCATTCTC 58.997 45.455 0.00 0.00 0.00 2.87
179 180 1.672881 CATTCTTGCGACCATTCTCCC 59.327 52.381 0.00 0.00 0.00 4.30
188 189 4.246458 GCGACCATTCTCCCTATTATCAC 58.754 47.826 0.00 0.00 0.00 3.06
193 194 5.370880 ACCATTCTCCCTATTATCACAAGCT 59.629 40.000 0.00 0.00 0.00 3.74
284 288 0.447801 ATTCTCATTTCGTGGCGTGC 59.552 50.000 0.00 0.00 0.00 5.34
357 361 2.037251 GCCACAGAAGACCAGACAACTA 59.963 50.000 0.00 0.00 0.00 2.24
374 378 5.798132 ACAACTATTTCAGACTCTGCATCA 58.202 37.500 0.62 0.00 0.00 3.07
405 418 2.867287 TCGTGTCGGTTTTCTGTACA 57.133 45.000 0.00 0.00 0.00 2.90
406 419 2.462889 TCGTGTCGGTTTTCTGTACAC 58.537 47.619 0.00 0.00 35.71 2.90
445 458 1.067846 GTCAACCGAATCCTTTTGCCC 60.068 52.381 0.00 0.00 0.00 5.36
478 493 4.405116 AAAAGATGTTCCAAAAGCAGCA 57.595 36.364 0.00 0.00 0.00 4.41
479 494 4.405116 AAAGATGTTCCAAAAGCAGCAA 57.595 36.364 0.00 0.00 0.00 3.91
480 495 3.655276 AGATGTTCCAAAAGCAGCAAG 57.345 42.857 0.00 0.00 0.00 4.01
481 496 2.064014 GATGTTCCAAAAGCAGCAAGC 58.936 47.619 0.00 0.00 46.19 4.01
490 505 2.732658 GCAGCAAGCAAGCAAGGT 59.267 55.556 3.19 0.00 44.79 3.50
495 510 0.386838 GCAAGCAAGCAAGGTTCAGT 59.613 50.000 0.00 0.00 0.00 3.41
521 536 6.313658 GTGTCTTGCAAAAAGGAAAGAACATT 59.686 34.615 0.00 0.00 0.00 2.71
556 574 8.545229 AATAGCATATCACTATTTCTGTCTGC 57.455 34.615 2.85 0.00 37.07 4.26
562 580 3.433274 TCACTATTTCTGTCTGCTTTGCG 59.567 43.478 0.00 0.00 0.00 4.85
563 581 2.744202 ACTATTTCTGTCTGCTTTGCGG 59.256 45.455 0.00 0.00 36.06 5.69
564 582 0.883833 ATTTCTGTCTGCTTTGCGGG 59.116 50.000 0.00 0.00 35.34 6.13
566 584 3.058160 CTGTCTGCTTTGCGGGGG 61.058 66.667 0.00 0.00 35.34 5.40
630 667 1.563410 GATGATCCCTCCATCCATCCC 59.437 57.143 0.00 0.00 35.56 3.85
631 668 0.476415 TGATCCCTCCATCCATCCCC 60.476 60.000 0.00 0.00 0.00 4.81
632 669 0.476415 GATCCCTCCATCCATCCCCA 60.476 60.000 0.00 0.00 0.00 4.96
634 671 1.697394 CCCTCCATCCATCCCCACA 60.697 63.158 0.00 0.00 0.00 4.17
699 747 3.931247 CACCGGACGAACCCCACA 61.931 66.667 9.46 0.00 34.64 4.17
700 748 3.932483 ACCGGACGAACCCCACAC 61.932 66.667 9.46 0.00 34.64 3.82
701 749 3.931247 CCGGACGAACCCCACACA 61.931 66.667 0.00 0.00 34.64 3.72
702 750 2.357034 CGGACGAACCCCACACAG 60.357 66.667 0.00 0.00 34.64 3.66
703 751 2.668550 GGACGAACCCCACACAGC 60.669 66.667 0.00 0.00 0.00 4.40
704 752 2.668550 GACGAACCCCACACAGCC 60.669 66.667 0.00 0.00 0.00 4.85
705 753 4.265056 ACGAACCCCACACAGCCC 62.265 66.667 0.00 0.00 0.00 5.19
706 754 4.263572 CGAACCCCACACAGCCCA 62.264 66.667 0.00 0.00 0.00 5.36
801 862 1.000612 ACTCCCGTCCCCTCTTCTC 59.999 63.158 0.00 0.00 0.00 2.87
1013 1483 3.017581 GGCCATGGAGAGGGTGGT 61.018 66.667 18.40 0.00 35.44 4.16
1612 2097 2.522193 CCTCCTCCTCCTACGGGC 60.522 72.222 0.00 0.00 0.00 6.13
1653 2147 2.656651 CTCGCGATTGAGCCTCCG 60.657 66.667 10.36 0.00 0.00 4.63
1656 2150 4.838152 GCGATTGAGCCTCCGCCA 62.838 66.667 2.89 0.00 41.59 5.69
1657 2151 2.892425 CGATTGAGCCTCCGCCAC 60.892 66.667 0.00 0.00 34.57 5.01
1658 2152 2.514824 GATTGAGCCTCCGCCACC 60.515 66.667 0.00 0.00 34.57 4.61
1659 2153 3.329542 GATTGAGCCTCCGCCACCA 62.330 63.158 0.00 0.00 34.57 4.17
1660 2154 3.628646 ATTGAGCCTCCGCCACCAC 62.629 63.158 0.00 0.00 34.57 4.16
1665 2159 4.263572 CCTCCGCCACCACCAACA 62.264 66.667 0.00 0.00 0.00 3.33
1725 2219 2.034687 CCAGCAGTGGTTCCCCAG 59.965 66.667 0.00 0.00 42.94 4.45
1866 2360 0.179100 ATGTCTTCTGGTCCGATGCG 60.179 55.000 0.00 0.00 0.00 4.73
1914 2408 0.958876 GGGACGCCGTTTTCTTGGAT 60.959 55.000 0.00 0.00 0.00 3.41
1947 2441 1.137872 AGAAGCAAGTATGAGCTCCCG 59.862 52.381 12.15 0.00 40.90 5.14
2004 2498 1.086696 CAGTCCTATTTGGGTGTGCG 58.913 55.000 0.00 0.00 36.20 5.34
2022 2516 1.270358 GCGGTCATCAGGGATAACTCC 60.270 57.143 0.00 0.00 41.26 3.85
2031 2525 1.389609 GGGATAACTCCGAGGCGTCA 61.390 60.000 7.26 0.00 43.11 4.35
2097 2591 0.543174 ACCCTGTCTCTCTCACCACC 60.543 60.000 0.00 0.00 0.00 4.61
2166 2660 1.078918 CAGGCACCGATTCTGCAGA 60.079 57.895 13.74 13.74 36.27 4.26
2280 2774 5.929697 TGTCTGACACAATTGATGAGTTC 57.070 39.130 13.59 2.08 32.63 3.01
2322 2816 3.913799 TGATTTCTAAGGTTGGGTCTGGA 59.086 43.478 0.00 0.00 0.00 3.86
2325 2819 1.975680 TCTAAGGTTGGGTCTGGACAC 59.024 52.381 3.10 0.00 34.68 3.67
2696 3190 0.755686 GTGGCAGAGGAGGATGGTAG 59.244 60.000 0.00 0.00 0.00 3.18
2768 3262 7.390440 TCGTATGGTTCAATTCAATTCTTCTGT 59.610 33.333 0.00 0.00 0.00 3.41
2778 3272 3.248363 TCAATTCTTCTGTGTGTTCTGCG 59.752 43.478 0.00 0.00 0.00 5.18
2883 3377 8.053355 TCTACACTTCCTTCTCAGTACATCATA 58.947 37.037 0.00 0.00 0.00 2.15
2910 3404 1.686052 TGGACCAAAAATGCCACAGAC 59.314 47.619 0.00 0.00 0.00 3.51
3223 3717 9.020731 GTTCTGGGAAAATTCAGGATAGTTTTA 57.979 33.333 0.00 0.00 0.00 1.52
3264 3758 7.765819 AGAAAAAGGAATTCAAACAACTCAAGG 59.234 33.333 7.93 0.00 0.00 3.61
3432 3926 1.070914 TCGGGTGCACATAACTCAACA 59.929 47.619 20.43 0.00 0.00 3.33
3558 4052 5.013599 AGCAGGAGAAACTAAATCTTCAGGT 59.986 40.000 0.00 0.00 0.00 4.00
3560 4054 5.123027 CAGGAGAAACTAAATCTTCAGGTGC 59.877 44.000 0.00 0.00 0.00 5.01
3641 4135 8.150945 TCATATCTTCCTGCACTATCCTTTAAC 58.849 37.037 0.00 0.00 0.00 2.01
3873 4412 5.240183 ACTTCTCCACTTGATTGTGAACATG 59.760 40.000 0.00 0.00 40.12 3.21
3933 4472 8.993424 ACTATAAGAGAATGAGGCTTTCCTTTA 58.007 33.333 0.00 0.00 44.46 1.85
4140 4697 4.298626 TCCACCTCCTGTTTCTGCTATAT 58.701 43.478 0.00 0.00 0.00 0.86
4141 4698 5.464069 TCCACCTCCTGTTTCTGCTATATA 58.536 41.667 0.00 0.00 0.00 0.86
4231 4788 6.544038 TGCATGATTTATGATAGTTCGTGG 57.456 37.500 0.00 0.00 39.21 4.94
4245 4802 2.325583 TCGTGGTGCTGTTCTCTTTT 57.674 45.000 0.00 0.00 0.00 2.27
4280 4837 8.675705 TTTCATGTCCTACATAACACCATATG 57.324 34.615 0.00 0.00 36.53 1.78
4492 5097 1.201647 CATTGTTTCCTCAGCTGGCTG 59.798 52.381 15.13 15.58 44.86 4.85
4639 5244 9.890629 AATATTGCTAGTTTGACTTGAGTATGA 57.109 29.630 0.00 0.00 0.00 2.15
4703 5308 1.867233 CTGTCCACAGGAAGAAACACG 59.133 52.381 0.00 0.00 40.20 4.49
4765 5370 7.386025 GGCAGCTAAAGAAAAATGAAGTGATTT 59.614 33.333 0.00 0.00 0.00 2.17
4841 5446 7.622893 ACAAATACAATTGCTGGTTTTGTTT 57.377 28.000 5.05 0.00 39.36 2.83
4976 5581 6.159299 AGAATGATGATCTCATGTTCTCGT 57.841 37.500 7.99 0.00 44.03 4.18
5082 5687 9.050601 GGAGAGAACCAATTATTTAGATCACTG 57.949 37.037 0.00 0.00 0.00 3.66
5156 5761 5.277250 TCCAGTTCATATCAGACTGGGTTA 58.723 41.667 20.46 6.63 45.75 2.85
5241 5846 5.687770 TTATTCATGTACATGCCATTCCG 57.312 39.130 27.71 5.20 38.65 4.30
5557 6227 2.951642 CACAATATCAACCATCGGGCTT 59.048 45.455 0.00 0.00 37.90 4.35
5720 6390 1.615883 GAAGGTGCTCTGACTGACTCA 59.384 52.381 0.00 0.00 0.00 3.41
5721 6391 0.965439 AGGTGCTCTGACTGACTCAC 59.035 55.000 0.00 0.00 0.00 3.51
5736 6406 3.133901 TGACTCACTAACAAGGCACTGAA 59.866 43.478 0.00 0.00 40.86 3.02
5742 6412 6.872920 TCACTAACAAGGCACTGAAAAATTT 58.127 32.000 0.00 0.00 40.86 1.82
5768 6438 7.451255 TGAGGGAATGTTTGTTCTGTATCAAAT 59.549 33.333 0.00 0.00 36.25 2.32
5833 6503 6.416631 GTATTTAGGAAATACTCCCTCCGT 57.583 41.667 12.69 0.00 46.81 4.69
5834 6504 5.548181 ATTTAGGAAATACTCCCTCCGTC 57.452 43.478 0.00 0.00 46.81 4.79
5835 6505 1.790818 AGGAAATACTCCCTCCGTCC 58.209 55.000 0.00 0.00 46.81 4.79
5836 6506 0.757512 GGAAATACTCCCTCCGTCCC 59.242 60.000 0.00 0.00 38.44 4.46
5837 6507 1.492764 GAAATACTCCCTCCGTCCCA 58.507 55.000 0.00 0.00 0.00 4.37
5838 6508 1.413077 GAAATACTCCCTCCGTCCCAG 59.587 57.143 0.00 0.00 0.00 4.45
5839 6509 0.635009 AATACTCCCTCCGTCCCAGA 59.365 55.000 0.00 0.00 0.00 3.86
5840 6510 0.635009 ATACTCCCTCCGTCCCAGAA 59.365 55.000 0.00 0.00 0.00 3.02
5841 6511 0.635009 TACTCCCTCCGTCCCAGAAT 59.365 55.000 0.00 0.00 0.00 2.40
5842 6512 0.252742 ACTCCCTCCGTCCCAGAATT 60.253 55.000 0.00 0.00 0.00 2.17
5843 6513 0.466124 CTCCCTCCGTCCCAGAATTC 59.534 60.000 0.00 0.00 0.00 2.17
5844 6514 0.042731 TCCCTCCGTCCCAGAATTCT 59.957 55.000 0.88 0.88 0.00 2.40
5845 6515 0.912486 CCCTCCGTCCCAGAATTCTT 59.088 55.000 4.86 0.00 0.00 2.52
5846 6516 1.407437 CCCTCCGTCCCAGAATTCTTG 60.407 57.143 4.86 1.85 0.00 3.02
5847 6517 1.279271 CCTCCGTCCCAGAATTCTTGT 59.721 52.381 4.86 0.00 0.00 3.16
5848 6518 2.622436 CTCCGTCCCAGAATTCTTGTC 58.378 52.381 4.86 0.00 0.00 3.18
5849 6519 2.234908 CTCCGTCCCAGAATTCTTGTCT 59.765 50.000 4.86 0.00 0.00 3.41
5850 6520 2.637872 TCCGTCCCAGAATTCTTGTCTT 59.362 45.455 4.86 0.00 0.00 3.01
5851 6521 3.835978 TCCGTCCCAGAATTCTTGTCTTA 59.164 43.478 4.86 0.00 0.00 2.10
5852 6522 4.081642 TCCGTCCCAGAATTCTTGTCTTAG 60.082 45.833 4.86 0.00 0.00 2.18
5853 6523 4.081642 CCGTCCCAGAATTCTTGTCTTAGA 60.082 45.833 4.86 0.00 0.00 2.10
5854 6524 5.395768 CCGTCCCAGAATTCTTGTCTTAGAT 60.396 44.000 4.86 0.00 0.00 1.98
5855 6525 6.109359 CGTCCCAGAATTCTTGTCTTAGATT 58.891 40.000 4.86 0.00 0.00 2.40
5856 6526 6.595716 CGTCCCAGAATTCTTGTCTTAGATTT 59.404 38.462 4.86 0.00 0.00 2.17
5857 6527 7.764443 CGTCCCAGAATTCTTGTCTTAGATTTA 59.236 37.037 4.86 0.00 0.00 1.40
5858 6528 9.620259 GTCCCAGAATTCTTGTCTTAGATTTAT 57.380 33.333 4.86 0.00 0.00 1.40
5859 6529 9.838339 TCCCAGAATTCTTGTCTTAGATTTATC 57.162 33.333 4.86 0.00 0.00 1.75
5860 6530 9.844257 CCCAGAATTCTTGTCTTAGATTTATCT 57.156 33.333 4.86 0.00 40.86 1.98
5890 6560 8.420374 ACGGATGTATCTAACACTAAAATGTG 57.580 34.615 0.00 0.00 42.09 3.21
5891 6561 8.255206 ACGGATGTATCTAACACTAAAATGTGA 58.745 33.333 1.47 0.00 42.09 3.58
5892 6562 9.093970 CGGATGTATCTAACACTAAAATGTGAA 57.906 33.333 1.47 0.00 42.09 3.18
5923 6593 8.234136 ACATCCGTATGTAGACAAATCTAAGA 57.766 34.615 0.00 0.00 44.66 2.10
5924 6594 8.136165 ACATCCGTATGTAGACAAATCTAAGAC 58.864 37.037 0.00 0.00 44.66 3.01
5925 6595 7.634671 TCCGTATGTAGACAAATCTAAGACA 57.365 36.000 0.00 0.00 39.20 3.41
5926 6596 8.058667 TCCGTATGTAGACAAATCTAAGACAA 57.941 34.615 0.00 0.00 39.20 3.18
5927 6597 8.188799 TCCGTATGTAGACAAATCTAAGACAAG 58.811 37.037 0.00 0.00 39.20 3.16
5928 6598 8.188799 CCGTATGTAGACAAATCTAAGACAAGA 58.811 37.037 0.00 0.00 39.20 3.02
5929 6599 9.569167 CGTATGTAGACAAATCTAAGACAAGAA 57.431 33.333 0.00 0.00 39.20 2.52
5936 6606 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
5937 6607 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
5938 6608 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
5939 6609 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
5940 6610 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
5941 6611 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
5942 6612 3.827722 AGACAAGAATTTTGGGACGGAA 58.172 40.909 0.00 0.00 0.00 4.30
5943 6613 3.821033 AGACAAGAATTTTGGGACGGAAG 59.179 43.478 0.00 0.00 0.00 3.46
5944 6614 2.890945 ACAAGAATTTTGGGACGGAAGG 59.109 45.455 0.00 0.00 0.00 3.46
5945 6615 3.153919 CAAGAATTTTGGGACGGAAGGA 58.846 45.455 0.00 0.00 0.00 3.36
5946 6616 3.073274 AGAATTTTGGGACGGAAGGAG 57.927 47.619 0.00 0.00 0.00 3.69
5947 6617 2.375509 AGAATTTTGGGACGGAAGGAGT 59.624 45.455 0.00 0.00 0.00 3.85
6137 6807 6.957631 TCCTATTGTGTTGTCCATTATGTCT 58.042 36.000 0.00 0.00 0.00 3.41
6180 6852 0.249531 TTGTGCCATGCAAGCTGTTG 60.250 50.000 12.69 0.00 41.47 3.33
6206 6878 4.096231 TGTTTGGTCATCTCTTGTTGTGTG 59.904 41.667 0.00 0.00 0.00 3.82
6207 6879 3.558931 TGGTCATCTCTTGTTGTGTGT 57.441 42.857 0.00 0.00 0.00 3.72
6208 6880 3.466836 TGGTCATCTCTTGTTGTGTGTC 58.533 45.455 0.00 0.00 0.00 3.67
6237 6909 1.000041 GGAGAGAGTAGGGGAGGGGA 61.000 65.000 0.00 0.00 0.00 4.81
6430 7257 3.198635 AGCATTGTAGCTCATGTGGTAGT 59.801 43.478 6.92 0.00 42.18 2.73
6521 7349 9.862371 TCATTTATCTTGACTCTTCAACTCTAC 57.138 33.333 0.00 0.00 36.79 2.59
6550 7378 7.716998 TCAAGGCTCTGACCATAATAAATCTTC 59.283 37.037 0.00 0.00 0.00 2.87
6565 7393 7.818997 ATAAATCTTCATGACATGTGCAGAT 57.181 32.000 14.98 15.48 0.00 2.90
6779 7616 9.612620 GGCTGCAATTCTGTTTATATATGTTAC 57.387 33.333 0.50 0.00 0.00 2.50
7008 7845 0.468226 TGGCAGAAAACACCGAGTCT 59.532 50.000 0.00 0.00 0.00 3.24
7207 8045 0.618680 TCCTCACTAGCACCAGCCAT 60.619 55.000 0.00 0.00 43.56 4.40
7249 8087 1.863662 CTGCAGCAGCCTGGACAAAG 61.864 60.000 10.14 0.00 41.13 2.77
7283 8121 2.803155 CTACCGCAGCCAAGGAAGCA 62.803 60.000 0.00 0.00 0.00 3.91
7395 8233 1.556911 GGGAGCAAGAGTGATCTTCCA 59.443 52.381 0.00 0.00 40.17 3.53
7400 8238 2.614987 GCAAGAGTGATCTTCCAGCTGT 60.615 50.000 13.81 0.00 0.00 4.40
7401 8239 3.672808 CAAGAGTGATCTTCCAGCTGTT 58.327 45.455 13.81 0.00 0.00 3.16
7402 8240 3.331478 AGAGTGATCTTCCAGCTGTTG 57.669 47.619 13.81 2.18 0.00 3.33
7403 8241 2.902486 AGAGTGATCTTCCAGCTGTTGA 59.098 45.455 13.81 7.93 0.00 3.18
7447 8289 2.614013 TCTCCCAAGGCTTCCCCC 60.614 66.667 0.00 0.00 0.00 5.40
7658 8507 2.611225 ATCGGACATGAAGCTTCCTC 57.389 50.000 23.42 14.26 0.00 3.71
7773 8830 3.587797 CATGGCTGCATGAGTTTTCTT 57.412 42.857 0.50 0.00 34.66 2.52
7774 8831 4.707030 CATGGCTGCATGAGTTTTCTTA 57.293 40.909 0.50 0.00 34.66 2.10
7775 8832 5.258456 CATGGCTGCATGAGTTTTCTTAT 57.742 39.130 0.50 0.00 34.66 1.73
7776 8833 5.657474 CATGGCTGCATGAGTTTTCTTATT 58.343 37.500 0.50 0.00 34.66 1.40
7777 8834 5.314923 TGGCTGCATGAGTTTTCTTATTC 57.685 39.130 0.50 0.00 0.00 1.75
7778 8835 5.012239 TGGCTGCATGAGTTTTCTTATTCT 58.988 37.500 0.50 0.00 0.00 2.40
7779 8836 5.477984 TGGCTGCATGAGTTTTCTTATTCTT 59.522 36.000 0.50 0.00 0.00 2.52
7780 8837 5.803967 GGCTGCATGAGTTTTCTTATTCTTG 59.196 40.000 0.50 0.00 0.00 3.02
7781 8838 5.803967 GCTGCATGAGTTTTCTTATTCTTGG 59.196 40.000 0.00 0.00 0.00 3.61
7782 8839 6.349611 GCTGCATGAGTTTTCTTATTCTTGGA 60.350 38.462 0.00 0.00 0.00 3.53
7783 8840 7.523293 TGCATGAGTTTTCTTATTCTTGGAA 57.477 32.000 0.00 0.00 0.00 3.53
7784 8841 7.950512 TGCATGAGTTTTCTTATTCTTGGAAA 58.049 30.769 0.00 0.00 0.00 3.13
7786 8843 7.543520 GCATGAGTTTTCTTATTCTTGGAAAGG 59.456 37.037 0.00 0.00 46.24 3.11
7787 8844 7.524717 TGAGTTTTCTTATTCTTGGAAAGGG 57.475 36.000 0.00 0.00 46.24 3.95
7788 8845 6.015434 TGAGTTTTCTTATTCTTGGAAAGGGC 60.015 38.462 0.00 0.00 46.24 5.19
7789 8846 5.246203 AGTTTTCTTATTCTTGGAAAGGGCC 59.754 40.000 0.00 0.00 46.24 5.80
7790 8847 3.382083 TCTTATTCTTGGAAAGGGCCC 57.618 47.619 16.46 16.46 46.24 5.80
7791 8848 2.926329 TCTTATTCTTGGAAAGGGCCCT 59.074 45.455 22.28 22.28 46.24 5.19
7792 8849 2.826674 TATTCTTGGAAAGGGCCCTG 57.173 50.000 29.50 12.33 46.24 4.45
7793 8850 0.786435 ATTCTTGGAAAGGGCCCTGT 59.214 50.000 29.50 23.51 46.24 4.00
7794 8851 0.560688 TTCTTGGAAAGGGCCCTGTT 59.439 50.000 29.50 21.44 46.24 3.16
7795 8852 0.560688 TCTTGGAAAGGGCCCTGTTT 59.439 50.000 29.50 18.27 46.24 2.83
7796 8853 1.062505 TCTTGGAAAGGGCCCTGTTTT 60.063 47.619 29.50 17.36 46.24 2.43
7797 8854 1.344438 CTTGGAAAGGGCCCTGTTTTC 59.656 52.381 29.50 24.92 41.27 2.29
7798 8855 0.560688 TGGAAAGGGCCCTGTTTTCT 59.439 50.000 29.50 4.95 32.74 2.52
7799 8856 1.062505 TGGAAAGGGCCCTGTTTTCTT 60.063 47.619 29.50 15.55 32.74 2.52
7800 8857 1.344438 GGAAAGGGCCCTGTTTTCTTG 59.656 52.381 29.50 0.00 32.74 3.02
7801 8858 2.316108 GAAAGGGCCCTGTTTTCTTGA 58.684 47.619 29.50 0.00 0.00 3.02
7802 8859 2.001076 AAGGGCCCTGTTTTCTTGAG 57.999 50.000 29.50 0.00 0.00 3.02
7803 8860 0.853530 AGGGCCCTGTTTTCTTGAGT 59.146 50.000 28.05 0.00 0.00 3.41
7804 8861 1.217942 AGGGCCCTGTTTTCTTGAGTT 59.782 47.619 28.05 0.00 0.00 3.01
7805 8862 1.341209 GGGCCCTGTTTTCTTGAGTTG 59.659 52.381 17.04 0.00 0.00 3.16
7806 8863 1.341209 GGCCCTGTTTTCTTGAGTTGG 59.659 52.381 0.00 0.00 0.00 3.77
7807 8864 2.306847 GCCCTGTTTTCTTGAGTTGGA 58.693 47.619 0.00 0.00 0.00 3.53
7808 8865 2.693074 GCCCTGTTTTCTTGAGTTGGAA 59.307 45.455 0.00 0.00 0.00 3.53
7809 8866 3.132111 GCCCTGTTTTCTTGAGTTGGAAA 59.868 43.478 0.00 0.00 0.00 3.13
7810 8867 4.737649 GCCCTGTTTTCTTGAGTTGGAAAG 60.738 45.833 0.00 0.00 33.77 2.62
7811 8868 4.202151 CCCTGTTTTCTTGAGTTGGAAAGG 60.202 45.833 0.00 0.00 33.77 3.11
7812 8869 4.202151 CCTGTTTTCTTGAGTTGGAAAGGG 60.202 45.833 0.00 0.00 33.77 3.95
7813 8870 4.605183 TGTTTTCTTGAGTTGGAAAGGGA 58.395 39.130 0.00 0.00 33.77 4.20
7814 8871 4.401202 TGTTTTCTTGAGTTGGAAAGGGAC 59.599 41.667 0.00 0.00 33.77 4.46
7815 8872 3.943671 TTCTTGAGTTGGAAAGGGACA 57.056 42.857 0.00 0.00 0.00 4.02
7816 8873 4.453480 TTCTTGAGTTGGAAAGGGACAT 57.547 40.909 0.00 0.00 0.00 3.06
7817 8874 3.754965 TCTTGAGTTGGAAAGGGACATG 58.245 45.455 0.00 0.00 0.00 3.21
7818 8875 3.138283 TCTTGAGTTGGAAAGGGACATGT 59.862 43.478 0.00 0.00 0.00 3.21
7819 8876 3.593442 TGAGTTGGAAAGGGACATGTT 57.407 42.857 0.00 0.00 0.00 2.71
7820 8877 4.715534 TGAGTTGGAAAGGGACATGTTA 57.284 40.909 0.00 0.00 0.00 2.41
7821 8878 4.651778 TGAGTTGGAAAGGGACATGTTAG 58.348 43.478 0.00 0.00 0.00 2.34
7822 8879 4.010349 GAGTTGGAAAGGGACATGTTAGG 58.990 47.826 0.00 0.00 0.00 2.69
7823 8880 3.089284 GTTGGAAAGGGACATGTTAGGG 58.911 50.000 0.00 0.00 0.00 3.53
7824 8881 1.638589 TGGAAAGGGACATGTTAGGGG 59.361 52.381 0.00 0.00 0.00 4.79
7825 8882 1.920351 GGAAAGGGACATGTTAGGGGA 59.080 52.381 0.00 0.00 0.00 4.81
7826 8883 2.092375 GGAAAGGGACATGTTAGGGGAG 60.092 54.545 0.00 0.00 0.00 4.30
7827 8884 2.361085 AAGGGACATGTTAGGGGAGT 57.639 50.000 0.00 0.00 0.00 3.85
7828 8885 1.584724 AGGGACATGTTAGGGGAGTG 58.415 55.000 0.00 0.00 0.00 3.51
7829 8886 1.203440 AGGGACATGTTAGGGGAGTGT 60.203 52.381 0.00 0.00 0.00 3.55
7830 8887 1.065418 GGGACATGTTAGGGGAGTGTG 60.065 57.143 0.00 0.00 0.00 3.82
7831 8888 1.906574 GGACATGTTAGGGGAGTGTGA 59.093 52.381 0.00 0.00 0.00 3.58
7832 8889 2.304761 GGACATGTTAGGGGAGTGTGAA 59.695 50.000 0.00 0.00 0.00 3.18
7833 8890 3.054361 GGACATGTTAGGGGAGTGTGAAT 60.054 47.826 0.00 0.00 0.00 2.57
7834 8891 4.567747 GGACATGTTAGGGGAGTGTGAATT 60.568 45.833 0.00 0.00 0.00 2.17
7835 8892 4.998051 ACATGTTAGGGGAGTGTGAATTT 58.002 39.130 0.00 0.00 0.00 1.82
7836 8893 5.393866 ACATGTTAGGGGAGTGTGAATTTT 58.606 37.500 0.00 0.00 0.00 1.82
7837 8894 5.476945 ACATGTTAGGGGAGTGTGAATTTTC 59.523 40.000 0.00 0.00 0.00 2.29
7838 8895 5.055265 TGTTAGGGGAGTGTGAATTTTCA 57.945 39.130 0.00 0.00 34.20 2.69
7839 8896 5.070001 TGTTAGGGGAGTGTGAATTTTCAG 58.930 41.667 0.00 0.00 37.98 3.02
7840 8897 5.163141 TGTTAGGGGAGTGTGAATTTTCAGA 60.163 40.000 0.00 0.00 37.98 3.27
7841 8898 4.026356 AGGGGAGTGTGAATTTTCAGAG 57.974 45.455 0.00 0.00 37.98 3.35
7842 8899 3.084786 GGGGAGTGTGAATTTTCAGAGG 58.915 50.000 0.00 0.00 37.98 3.69
7843 8900 3.244911 GGGGAGTGTGAATTTTCAGAGGA 60.245 47.826 0.00 0.00 37.98 3.71
7844 8901 3.753797 GGGAGTGTGAATTTTCAGAGGAC 59.246 47.826 0.00 0.00 37.98 3.85
7845 8902 3.433615 GGAGTGTGAATTTTCAGAGGACG 59.566 47.826 0.00 0.00 37.98 4.79
7846 8903 3.403038 AGTGTGAATTTTCAGAGGACGG 58.597 45.455 0.00 0.00 37.98 4.79
7847 8904 2.484264 GTGTGAATTTTCAGAGGACGGG 59.516 50.000 0.00 0.00 37.98 5.28
7848 8905 1.468914 GTGAATTTTCAGAGGACGGGC 59.531 52.381 0.00 0.00 37.98 6.13
7849 8906 1.351017 TGAATTTTCAGAGGACGGGCT 59.649 47.619 0.00 0.00 32.50 5.19
7850 8907 2.010497 GAATTTTCAGAGGACGGGCTC 58.990 52.381 0.00 0.00 0.00 4.70
7851 8908 0.253327 ATTTTCAGAGGACGGGCTCC 59.747 55.000 0.00 0.00 39.81 4.70
7858 8915 4.475135 GGACGGGCTCCTTGGAGC 62.475 72.222 28.17 28.17 46.78 4.70
7859 8916 3.394836 GACGGGCTCCTTGGAGCT 61.395 66.667 32.42 18.71 46.69 4.09
7860 8917 2.930562 ACGGGCTCCTTGGAGCTT 60.931 61.111 32.42 18.91 46.69 3.74
7861 8918 2.437359 CGGGCTCCTTGGAGCTTG 60.437 66.667 32.42 23.45 46.69 4.01
7862 8919 2.759795 GGGCTCCTTGGAGCTTGT 59.240 61.111 32.42 0.00 46.69 3.16
7863 8920 1.075659 GGGCTCCTTGGAGCTTGTT 59.924 57.895 32.42 0.00 46.69 2.83
7864 8921 0.540597 GGGCTCCTTGGAGCTTGTTT 60.541 55.000 32.42 0.00 46.69 2.83
7865 8922 1.332195 GGCTCCTTGGAGCTTGTTTT 58.668 50.000 32.42 0.00 46.69 2.43
7866 8923 1.688735 GGCTCCTTGGAGCTTGTTTTT 59.311 47.619 32.42 0.00 46.69 1.94
7943 9000 9.194972 TCCATGGAAACTTATATGTATTTTGCA 57.805 29.630 13.46 0.00 32.95 4.08
7944 9001 9.985730 CCATGGAAACTTATATGTATTTTGCAT 57.014 29.630 5.56 5.73 38.34 3.96
7956 9013 7.585286 ATGTATTTTGCATGAATGTGTGAAC 57.415 32.000 0.00 0.00 0.00 3.18
7957 9014 6.510536 TGTATTTTGCATGAATGTGTGAACA 58.489 32.000 0.00 0.23 0.00 3.18
7958 9015 6.982724 TGTATTTTGCATGAATGTGTGAACAA 59.017 30.769 0.00 0.00 0.00 2.83
7959 9016 6.922247 ATTTTGCATGAATGTGTGAACAAA 57.078 29.167 0.00 0.00 0.00 2.83
7960 9017 6.922247 TTTTGCATGAATGTGTGAACAAAT 57.078 29.167 0.00 0.00 0.00 2.32
7961 9018 6.528014 TTTGCATGAATGTGTGAACAAATC 57.472 33.333 0.00 0.00 0.00 2.17
7962 9019 4.228317 TGCATGAATGTGTGAACAAATCG 58.772 39.130 0.00 0.00 0.00 3.34
7963 9020 4.229096 GCATGAATGTGTGAACAAATCGT 58.771 39.130 0.00 0.00 0.00 3.73
7964 9021 4.681025 GCATGAATGTGTGAACAAATCGTT 59.319 37.500 0.00 0.00 41.86 3.85
7965 9022 5.387649 GCATGAATGTGTGAACAAATCGTTG 60.388 40.000 0.00 0.00 38.19 4.10
7966 9023 5.491635 TGAATGTGTGAACAAATCGTTGA 57.508 34.783 0.00 0.00 38.19 3.18
7967 9024 5.884771 TGAATGTGTGAACAAATCGTTGAA 58.115 33.333 0.00 0.00 38.19 2.69
7968 9025 6.325596 TGAATGTGTGAACAAATCGTTGAAA 58.674 32.000 0.00 0.00 38.19 2.69
7969 9026 6.808704 TGAATGTGTGAACAAATCGTTGAAAA 59.191 30.769 0.00 0.00 38.19 2.29
7970 9027 7.490725 TGAATGTGTGAACAAATCGTTGAAAAT 59.509 29.630 0.00 0.00 38.19 1.82
7971 9028 8.864069 AATGTGTGAACAAATCGTTGAAAATA 57.136 26.923 0.00 0.00 38.19 1.40
7972 9029 9.474920 AATGTGTGAACAAATCGTTGAAAATAT 57.525 25.926 0.00 0.00 38.19 1.28
7973 9030 8.864069 TGTGTGAACAAATCGTTGAAAATATT 57.136 26.923 0.00 0.00 38.19 1.28
7974 9031 9.952188 TGTGTGAACAAATCGTTGAAAATATTA 57.048 25.926 0.00 0.00 38.19 0.98
7986 9043 9.944663 TCGTTGAAAATATTATGATTTGTAGGC 57.055 29.630 0.00 0.00 0.00 3.93
7987 9044 9.950680 CGTTGAAAATATTATGATTTGTAGGCT 57.049 29.630 0.00 0.00 0.00 4.58
7991 9048 9.185192 GAAAATATTATGATTTGTAGGCTGTGC 57.815 33.333 0.00 0.00 0.00 4.57
7992 9049 7.822161 AATATTATGATTTGTAGGCTGTGCA 57.178 32.000 0.00 0.00 0.00 4.57
7993 9050 7.822161 ATATTATGATTTGTAGGCTGTGCAA 57.178 32.000 0.00 0.00 0.00 4.08
7994 9051 5.973899 TTATGATTTGTAGGCTGTGCAAA 57.026 34.783 13.28 13.28 43.83 3.68
7995 9052 4.870123 ATGATTTGTAGGCTGTGCAAAA 57.130 36.364 14.36 3.96 43.06 2.44
7996 9053 4.662468 TGATTTGTAGGCTGTGCAAAAA 57.338 36.364 14.36 6.70 43.06 1.94
8018 9075 7.872113 AAAACAAAATTTCAGCCCAATAACA 57.128 28.000 0.00 0.00 0.00 2.41
8019 9076 7.872113 AAACAAAATTTCAGCCCAATAACAA 57.128 28.000 0.00 0.00 0.00 2.83
8020 9077 7.872113 AACAAAATTTCAGCCCAATAACAAA 57.128 28.000 0.00 0.00 0.00 2.83
8021 9078 7.872113 ACAAAATTTCAGCCCAATAACAAAA 57.128 28.000 0.00 0.00 0.00 2.44
8022 9079 8.286191 ACAAAATTTCAGCCCAATAACAAAAA 57.714 26.923 0.00 0.00 0.00 1.94
8046 9103 6.558771 AAAGTCTGCCCATTTTAAAAATGC 57.441 33.333 4.44 8.46 0.00 3.56
8047 9104 4.244862 AGTCTGCCCATTTTAAAAATGCG 58.755 39.130 4.44 5.36 0.00 4.73
8048 9105 3.993736 GTCTGCCCATTTTAAAAATGCGT 59.006 39.130 4.44 0.00 0.00 5.24
8049 9106 5.047660 AGTCTGCCCATTTTAAAAATGCGTA 60.048 36.000 4.44 0.00 0.00 4.42
8050 9107 5.810074 GTCTGCCCATTTTAAAAATGCGTAT 59.190 36.000 4.44 0.00 0.00 3.06
8051 9108 6.312672 GTCTGCCCATTTTAAAAATGCGTATT 59.687 34.615 4.44 0.00 0.00 1.89
8052 9109 6.876257 TCTGCCCATTTTAAAAATGCGTATTT 59.124 30.769 5.58 5.58 38.11 1.40
8053 9110 6.835914 TGCCCATTTTAAAAATGCGTATTTG 58.164 32.000 12.37 0.00 36.65 2.32
8054 9111 5.736824 GCCCATTTTAAAAATGCGTATTTGC 59.263 36.000 12.37 4.55 36.65 3.68
8055 9112 6.254480 CCCATTTTAAAAATGCGTATTTGCC 58.746 36.000 12.37 0.00 36.65 4.52
8056 9113 6.093357 CCCATTTTAAAAATGCGTATTTGCCT 59.907 34.615 12.37 3.41 36.65 4.75
8057 9114 6.960431 CCATTTTAAAAATGCGTATTTGCCTG 59.040 34.615 12.37 5.13 36.65 4.85
8058 9115 7.360776 CCATTTTAAAAATGCGTATTTGCCTGT 60.361 33.333 12.37 0.00 36.65 4.00
8059 9116 7.484035 TTTTAAAAATGCGTATTTGCCTGTT 57.516 28.000 12.37 5.31 36.65 3.16
8060 9117 7.484035 TTTAAAAATGCGTATTTGCCTGTTT 57.516 28.000 12.37 4.64 36.65 2.83
8061 9118 7.484035 TTAAAAATGCGTATTTGCCTGTTTT 57.516 28.000 12.37 3.98 36.65 2.43
8062 9119 4.988708 AAATGCGTATTTGCCTGTTTTG 57.011 36.364 10.85 0.00 35.26 2.44
8063 9120 3.658757 ATGCGTATTTGCCTGTTTTGT 57.341 38.095 0.00 0.00 0.00 2.83
8064 9121 2.736978 TGCGTATTTGCCTGTTTTGTG 58.263 42.857 0.00 0.00 0.00 3.33
8065 9122 2.099921 TGCGTATTTGCCTGTTTTGTGT 59.900 40.909 0.00 0.00 0.00 3.72
8066 9123 3.315470 TGCGTATTTGCCTGTTTTGTGTA 59.685 39.130 0.00 0.00 0.00 2.90
8067 9124 3.666797 GCGTATTTGCCTGTTTTGTGTAC 59.333 43.478 0.00 0.00 0.00 2.90
8068 9125 3.903644 CGTATTTGCCTGTTTTGTGTACG 59.096 43.478 0.00 0.00 0.00 3.67
8069 9126 2.196295 TTTGCCTGTTTTGTGTACGC 57.804 45.000 0.00 0.00 0.00 4.42
8070 9127 0.382515 TTGCCTGTTTTGTGTACGCC 59.617 50.000 3.51 0.00 0.00 5.68
8071 9128 0.748367 TGCCTGTTTTGTGTACGCCA 60.748 50.000 3.51 0.00 0.00 5.69
8072 9129 0.596082 GCCTGTTTTGTGTACGCCAT 59.404 50.000 3.51 0.00 0.00 4.40
8073 9130 1.665735 GCCTGTTTTGTGTACGCCATG 60.666 52.381 3.51 0.00 0.00 3.66
8074 9131 1.606668 CCTGTTTTGTGTACGCCATGT 59.393 47.619 3.51 0.00 0.00 3.21
8075 9132 2.604373 CCTGTTTTGTGTACGCCATGTG 60.604 50.000 3.51 0.00 0.00 3.21
8076 9133 2.017782 TGTTTTGTGTACGCCATGTGT 58.982 42.857 3.51 0.00 0.00 3.72
8077 9134 2.223363 TGTTTTGTGTACGCCATGTGTG 60.223 45.455 3.51 0.00 0.00 3.82
8078 9135 1.954927 TTTGTGTACGCCATGTGTGA 58.045 45.000 3.51 0.00 0.00 3.58
8079 9136 1.954927 TTGTGTACGCCATGTGTGAA 58.045 45.000 3.51 0.00 0.00 3.18
8080 9137 1.954927 TGTGTACGCCATGTGTGAAA 58.045 45.000 3.51 0.00 0.00 2.69
8081 9138 2.499197 TGTGTACGCCATGTGTGAAAT 58.501 42.857 3.51 0.00 0.00 2.17
8082 9139 2.881513 TGTGTACGCCATGTGTGAAATT 59.118 40.909 3.51 0.00 0.00 1.82
8083 9140 4.065789 TGTGTACGCCATGTGTGAAATTA 58.934 39.130 3.51 0.00 0.00 1.40
8084 9141 4.697828 TGTGTACGCCATGTGTGAAATTAT 59.302 37.500 3.51 0.00 0.00 1.28
8085 9142 5.875359 TGTGTACGCCATGTGTGAAATTATA 59.125 36.000 3.51 0.00 0.00 0.98
8086 9143 6.540551 TGTGTACGCCATGTGTGAAATTATAT 59.459 34.615 3.51 0.00 0.00 0.86
8087 9144 7.066404 TGTGTACGCCATGTGTGAAATTATATT 59.934 33.333 3.51 0.00 0.00 1.28
8088 9145 7.586300 GTGTACGCCATGTGTGAAATTATATTC 59.414 37.037 0.00 0.00 0.00 1.75
8089 9146 6.942532 ACGCCATGTGTGAAATTATATTCT 57.057 33.333 0.00 0.00 0.00 2.40
8090 9147 7.333528 ACGCCATGTGTGAAATTATATTCTT 57.666 32.000 0.00 0.00 0.00 2.52
8091 9148 8.445275 ACGCCATGTGTGAAATTATATTCTTA 57.555 30.769 0.00 0.00 0.00 2.10
8092 9149 9.066892 ACGCCATGTGTGAAATTATATTCTTAT 57.933 29.630 0.00 0.00 0.00 1.73
8093 9150 9.333497 CGCCATGTGTGAAATTATATTCTTATG 57.667 33.333 0.00 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 9.547753 TTGATTAAGTAGAGGATAATTGTCAGC 57.452 33.333 4.48 0.00 0.00 4.26
67 68 7.437748 CCTCGTCAATTGATTAAGTAGAGGAT 58.562 38.462 12.12 0.00 42.87 3.24
84 85 2.226437 GCTGAAAGATTTGCCTCGTCAA 59.774 45.455 0.00 0.00 34.07 3.18
85 86 1.806542 GCTGAAAGATTTGCCTCGTCA 59.193 47.619 0.00 0.00 34.07 4.35
144 145 0.326264 GAATGTGAGGGTGAGGCTGT 59.674 55.000 0.00 0.00 0.00 4.40
172 173 8.160106 CCTTTAGCTTGTGATAATAGGGAGAAT 58.840 37.037 0.00 0.00 0.00 2.40
177 178 7.173390 GCTTACCTTTAGCTTGTGATAATAGGG 59.827 40.741 0.00 0.00 35.74 3.53
179 180 7.715249 TGGCTTACCTTTAGCTTGTGATAATAG 59.285 37.037 0.00 0.00 38.67 1.73
222 225 5.347907 GGTACTTTCGAGGTATTGTGAACTG 59.652 44.000 0.00 0.00 0.00 3.16
284 288 3.116531 GTTCGGGCGTTTCTCGGG 61.117 66.667 0.00 0.00 40.26 5.14
460 475 2.288640 GCTTGCTGCTTTTGGAACATCT 60.289 45.455 0.00 0.00 37.04 2.90
461 476 2.064014 GCTTGCTGCTTTTGGAACATC 58.936 47.619 0.00 0.00 37.04 3.06
462 477 1.413445 TGCTTGCTGCTTTTGGAACAT 59.587 42.857 0.00 0.00 43.37 2.71
464 479 1.862827 CTTGCTTGCTGCTTTTGGAAC 59.137 47.619 0.00 0.00 43.37 3.62
466 481 0.249573 GCTTGCTTGCTGCTTTTGGA 60.250 50.000 0.00 0.00 43.37 3.53
467 482 0.531090 TGCTTGCTTGCTGCTTTTGG 60.531 50.000 0.00 0.00 43.37 3.28
468 483 1.260561 CTTGCTTGCTTGCTGCTTTTG 59.739 47.619 0.00 0.00 43.37 2.44
472 487 1.397390 AACCTTGCTTGCTTGCTGCT 61.397 50.000 0.00 0.00 43.37 4.24
473 488 0.942884 GAACCTTGCTTGCTTGCTGC 60.943 55.000 0.00 0.00 43.25 5.25
474 489 0.386476 TGAACCTTGCTTGCTTGCTG 59.614 50.000 3.47 0.00 0.00 4.41
475 490 0.672342 CTGAACCTTGCTTGCTTGCT 59.328 50.000 3.47 0.00 0.00 3.91
476 491 0.386838 ACTGAACCTTGCTTGCTTGC 59.613 50.000 0.00 0.00 0.00 4.01
477 492 1.406539 ACACTGAACCTTGCTTGCTTG 59.593 47.619 0.00 0.00 0.00 4.01
478 493 1.406539 CACACTGAACCTTGCTTGCTT 59.593 47.619 0.00 0.00 0.00 3.91
479 494 1.027357 CACACTGAACCTTGCTTGCT 58.973 50.000 0.00 0.00 0.00 3.91
480 495 0.740737 ACACACTGAACCTTGCTTGC 59.259 50.000 0.00 0.00 0.00 4.01
481 496 2.292267 AGACACACTGAACCTTGCTTG 58.708 47.619 0.00 0.00 0.00 4.01
482 497 2.684881 CAAGACACACTGAACCTTGCTT 59.315 45.455 0.00 0.00 0.00 3.91
490 505 3.761218 TCCTTTTTGCAAGACACACTGAA 59.239 39.130 0.00 0.00 0.00 3.02
495 510 5.167845 GTTCTTTCCTTTTTGCAAGACACA 58.832 37.500 0.00 0.00 0.00 3.72
521 536 6.737720 AGTGATATGCTATTCTCCTTGACA 57.262 37.500 0.00 0.00 0.00 3.58
575 612 2.277247 CAAAATAGTGCGGCGCCG 60.277 61.111 43.13 43.13 43.09 6.46
630 667 2.941333 CAACTGAGCTGCGTGTGG 59.059 61.111 0.00 0.00 0.00 4.17
631 668 2.250485 GCAACTGAGCTGCGTGTG 59.750 61.111 0.00 0.00 0.00 3.82
632 669 2.203056 TGCAACTGAGCTGCGTGT 60.203 55.556 3.17 0.00 42.97 4.49
634 671 3.341043 CGTGCAACTGAGCTGCGT 61.341 61.111 3.17 0.00 42.97 5.24
685 733 2.357034 CTGTGTGGGGTTCGTCCG 60.357 66.667 0.00 0.00 37.00 4.79
686 734 2.668550 GCTGTGTGGGGTTCGTCC 60.669 66.667 0.00 0.00 0.00 4.79
687 735 2.668550 GGCTGTGTGGGGTTCGTC 60.669 66.667 0.00 0.00 0.00 4.20
688 736 4.265056 GGGCTGTGTGGGGTTCGT 62.265 66.667 0.00 0.00 0.00 3.85
689 737 3.783362 TTGGGCTGTGTGGGGTTCG 62.783 63.158 0.00 0.00 0.00 3.95
691 739 2.198426 CTTGGGCTGTGTGGGGTT 59.802 61.111 0.00 0.00 0.00 4.11
692 740 4.603535 GCTTGGGCTGTGTGGGGT 62.604 66.667 0.00 0.00 35.22 4.95
695 743 4.641645 TCCGCTTGGGCTGTGTGG 62.642 66.667 0.00 0.00 36.09 4.17
696 744 3.357079 GTCCGCTTGGGCTGTGTG 61.357 66.667 0.00 0.00 33.30 3.82
702 750 2.743928 CTCACAGTCCGCTTGGGC 60.744 66.667 0.00 0.00 37.78 5.36
703 751 2.046892 CCTCACAGTCCGCTTGGG 60.047 66.667 0.00 0.00 37.02 4.12
704 752 1.374758 GTCCTCACAGTCCGCTTGG 60.375 63.158 0.00 0.00 0.00 3.61
705 753 1.734477 CGTCCTCACAGTCCGCTTG 60.734 63.158 0.00 0.00 0.00 4.01
706 754 2.651361 CGTCCTCACAGTCCGCTT 59.349 61.111 0.00 0.00 0.00 4.68
1612 2097 4.918201 GCCTCCATTCCGGCGGAG 62.918 72.222 29.30 18.31 43.04 4.63
1629 2114 0.302890 GCTCAATCGCGAGGAACATG 59.697 55.000 16.66 6.70 33.36 3.21
1725 2219 1.238439 CGATGCCATCCCCAATGTAC 58.762 55.000 0.00 0.00 33.13 2.90
1866 2360 1.062845 GTACGCTGTCCTCGCTCTC 59.937 63.158 0.00 0.00 0.00 3.20
1878 2372 0.036306 CCCCAAAGTCCTTGTACGCT 59.964 55.000 0.00 0.00 32.65 5.07
1914 2408 1.761449 TGCTTCTTTTGCAGTGGTCA 58.239 45.000 0.00 0.00 35.31 4.02
1947 2441 1.003839 TCCGGTGAATGTGACCAGC 60.004 57.895 0.00 0.00 32.45 4.85
1950 2444 0.320374 TGACTCCGGTGAATGTGACC 59.680 55.000 11.17 0.00 0.00 4.02
2004 2498 2.297597 CTCGGAGTTATCCCTGATGACC 59.702 54.545 0.00 0.00 43.39 4.02
2022 2516 1.135315 CCAAGCAAATGACGCCTCG 59.865 57.895 0.00 0.00 0.00 4.63
2031 2525 4.122046 GTGTTTCAAAGAGCCAAGCAAAT 58.878 39.130 0.00 0.00 0.00 2.32
2097 2591 1.336795 TGTATGGCGCCATCATACTCG 60.337 52.381 43.60 0.00 44.22 4.18
2145 2639 1.675641 GCAGAATCGGTGCCTGGTT 60.676 57.895 0.00 0.00 34.67 3.67
2166 2660 2.429610 GGCTTCATTCAAGATGTGCCAT 59.570 45.455 15.25 0.00 38.50 4.40
2280 2774 0.819582 ATGCCTCCCAATTTGCTTCG 59.180 50.000 0.00 0.00 0.00 3.79
2322 2816 1.873591 GAATCAAGCCACTCGTTGTGT 59.126 47.619 9.58 0.00 44.81 3.72
2325 2819 3.058016 ACATTGAATCAAGCCACTCGTTG 60.058 43.478 1.10 0.00 0.00 4.10
2369 2863 4.489737 TGTATCCCTCAAGTATACAGGGG 58.510 47.826 21.13 16.97 46.44 4.79
2373 2867 8.210946 CCAAAGAATGTATCCCTCAAGTATACA 58.789 37.037 5.50 0.00 39.64 2.29
2608 3102 1.865865 AACAGCGTCCTTGTGTACAG 58.134 50.000 0.00 0.00 0.00 2.74
2696 3190 3.066760 GGTCACTTTATATGTGCAAGCCC 59.933 47.826 0.00 0.00 35.58 5.19
2768 3262 2.805671 CAGGTACATTTCGCAGAACACA 59.194 45.455 0.00 0.00 45.90 3.72
2778 3272 5.168569 TCGAACATCTGACAGGTACATTTC 58.831 41.667 1.81 0.00 0.00 2.17
2883 3377 4.821260 GTGGCATTTTTGGTCCATCTTTTT 59.179 37.500 0.00 0.00 0.00 1.94
2910 3404 1.801178 GGTTTCTTGTCCGAGCTTCTG 59.199 52.381 0.00 0.00 0.00 3.02
3079 3573 1.080298 GAGCCTGCATTGCCACAAC 60.080 57.895 6.12 0.00 0.00 3.32
3204 3698 8.730680 TGCTGACTAAAACTATCCTGAATTTTC 58.269 33.333 0.00 0.00 0.00 2.29
3210 3704 7.450074 TCTTTTGCTGACTAAAACTATCCTGA 58.550 34.615 0.00 0.00 0.00 3.86
3223 3717 5.888161 TCCTTTTTCTCTTCTTTTGCTGACT 59.112 36.000 0.00 0.00 0.00 3.41
3264 3758 1.275291 TGATTCGGTGTGGAGTTCTCC 59.725 52.381 11.53 11.53 0.00 3.71
3375 3869 3.057946 GTGCACAGGAAGAAACAGGAATC 60.058 47.826 13.17 0.00 0.00 2.52
3432 3926 0.892755 CAGTTGCCATGTTGCCATCT 59.107 50.000 0.00 0.00 0.00 2.90
3558 4052 1.874231 TCGTTAATTTGTGAAGCGGCA 59.126 42.857 1.45 0.00 0.00 5.69
3560 4054 2.482721 ACCTCGTTAATTTGTGAAGCGG 59.517 45.455 0.00 0.00 0.00 5.52
3641 4135 3.253921 TCAATGGAGCACACAATGAACAG 59.746 43.478 0.00 0.00 0.00 3.16
3741 4235 4.646572 TGCACAACATCACTACCATAACA 58.353 39.130 0.00 0.00 0.00 2.41
3818 4312 6.715464 AGTTTCGTTGCATGCATTATACTAC 58.285 36.000 23.37 13.67 0.00 2.73
3896 4435 9.322773 CTCATTCTCTTATAGTTCATCAAGCAA 57.677 33.333 0.00 0.00 0.00 3.91
4224 4781 1.583054 AAGAGAACAGCACCACGAAC 58.417 50.000 0.00 0.00 0.00 3.95
4280 4837 4.489306 AGAGGGTAGAAAATGGTAGCAC 57.511 45.455 0.00 0.00 0.00 4.40
4287 4844 7.391833 AGCAAGTTTAGAAGAGGGTAGAAAATG 59.608 37.037 0.00 0.00 0.00 2.32
4388 4981 4.589908 ACTTCACCCCACAAGAACATATC 58.410 43.478 0.00 0.00 0.00 1.63
4492 5097 6.509418 TGAATATTTCAAAGCACCTACACC 57.491 37.500 0.00 0.00 36.59 4.16
4639 5244 6.626623 GCAGTTAAGCAGATTTTGGATCATGT 60.627 38.462 0.00 0.00 0.00 3.21
4703 5308 7.628580 GCTGAACAATGGAAGGAAATTAGGTAC 60.629 40.741 0.00 0.00 0.00 3.34
4765 5370 2.230992 ACACTGCTTTGCAACTGAACAA 59.769 40.909 0.00 0.00 38.41 2.83
4841 5446 4.079730 TGATCAGACAGCCTTACTCCTAGA 60.080 45.833 0.00 0.00 0.00 2.43
5126 5731 7.674120 CAGTCTGATATGAACTGGATATCCAA 58.326 38.462 24.54 10.95 46.97 3.53
5156 5761 1.561542 CAGTATTCCAGACCCTTGCCT 59.438 52.381 0.00 0.00 0.00 4.75
5368 5973 4.883083 ACAGAAGGTGCACCGTATATATG 58.117 43.478 29.68 21.56 42.08 1.78
5370 5975 6.659745 ATAACAGAAGGTGCACCGTATATA 57.340 37.500 29.68 19.15 42.08 0.86
5517 6187 1.901085 GCCACTAGCCAGTACAGCT 59.099 57.895 14.05 14.05 44.49 4.24
5557 6227 6.887002 TGTACTTTCACACATATTGGCCATAA 59.113 34.615 6.09 0.00 0.00 1.90
5720 6390 6.872920 TCAAATTTTTCAGTGCCTTGTTAGT 58.127 32.000 0.00 0.00 0.00 2.24
5721 6391 6.421801 CCTCAAATTTTTCAGTGCCTTGTTAG 59.578 38.462 0.00 0.00 0.00 2.34
5736 6406 7.337938 ACAGAACAAACATTCCCTCAAATTTT 58.662 30.769 0.00 0.00 0.00 1.82
5742 6412 5.875224 TGATACAGAACAAACATTCCCTCA 58.125 37.500 0.00 0.00 0.00 3.86
5768 6438 5.546621 ACACTTGGCTAACTTCAACTAGA 57.453 39.130 0.00 0.00 0.00 2.43
5829 6499 2.257207 AGACAAGAATTCTGGGACGGA 58.743 47.619 14.48 0.00 45.11 4.69
5830 6500 2.770164 AGACAAGAATTCTGGGACGG 57.230 50.000 14.48 1.25 0.00 4.79
5831 6501 5.073311 TCTAAGACAAGAATTCTGGGACG 57.927 43.478 14.48 1.84 0.00 4.79
5832 6502 7.929941 AAATCTAAGACAAGAATTCTGGGAC 57.070 36.000 14.48 7.81 0.00 4.46
5833 6503 9.838339 GATAAATCTAAGACAAGAATTCTGGGA 57.162 33.333 14.48 1.82 0.00 4.37
5834 6504 9.844257 AGATAAATCTAAGACAAGAATTCTGGG 57.156 33.333 14.48 9.90 34.85 4.45
5864 6534 9.524106 CACATTTTAGTGTTAGATACATCCGTA 57.476 33.333 0.00 0.00 39.39 4.02
5865 6535 8.255206 TCACATTTTAGTGTTAGATACATCCGT 58.745 33.333 0.00 0.00 39.39 4.69
5866 6536 8.642908 TCACATTTTAGTGTTAGATACATCCG 57.357 34.615 0.00 0.00 39.39 4.18
5887 6557 9.687210 GTCTACATACGGATGTATTTATTCACA 57.313 33.333 20.64 0.00 45.42 3.58
5888 6558 9.687210 TGTCTACATACGGATGTATTTATTCAC 57.313 33.333 20.64 9.33 45.42 3.18
5897 6567 9.346005 TCTTAGATTTGTCTACATACGGATGTA 57.654 33.333 19.32 19.32 44.77 2.29
5899 6569 8.135529 TGTCTTAGATTTGTCTACATACGGATG 58.864 37.037 5.94 5.94 39.16 3.51
5900 6570 8.234136 TGTCTTAGATTTGTCTACATACGGAT 57.766 34.615 0.00 0.00 0.00 4.18
5901 6571 7.634671 TGTCTTAGATTTGTCTACATACGGA 57.365 36.000 0.00 0.00 0.00 4.69
5902 6572 8.188799 TCTTGTCTTAGATTTGTCTACATACGG 58.811 37.037 0.00 0.00 0.00 4.02
5903 6573 9.569167 TTCTTGTCTTAGATTTGTCTACATACG 57.431 33.333 0.00 0.00 0.00 3.06
5910 6580 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
5911 6581 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
5912 6582 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
5913 6583 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
5914 6584 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
5915 6585 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
5916 6586 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
5917 6587 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
5918 6588 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
5919 6589 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
5920 6590 3.827722 TCCGTCCCAAAATTCTTGTCTT 58.172 40.909 0.00 0.00 0.00 3.01
5921 6591 3.502123 TCCGTCCCAAAATTCTTGTCT 57.498 42.857 0.00 0.00 0.00 3.41
5922 6592 3.057526 CCTTCCGTCCCAAAATTCTTGTC 60.058 47.826 0.00 0.00 0.00 3.18
5923 6593 2.890945 CCTTCCGTCCCAAAATTCTTGT 59.109 45.455 0.00 0.00 0.00 3.16
5924 6594 3.153919 TCCTTCCGTCCCAAAATTCTTG 58.846 45.455 0.00 0.00 0.00 3.02
5925 6595 3.181433 ACTCCTTCCGTCCCAAAATTCTT 60.181 43.478 0.00 0.00 0.00 2.52
5926 6596 2.375509 ACTCCTTCCGTCCCAAAATTCT 59.624 45.455 0.00 0.00 0.00 2.40
5927 6597 2.791655 ACTCCTTCCGTCCCAAAATTC 58.208 47.619 0.00 0.00 0.00 2.17
5928 6598 2.971901 ACTCCTTCCGTCCCAAAATT 57.028 45.000 0.00 0.00 0.00 1.82
5929 6599 3.178865 TCTACTCCTTCCGTCCCAAAAT 58.821 45.455 0.00 0.00 0.00 1.82
5930 6600 2.612000 TCTACTCCTTCCGTCCCAAAA 58.388 47.619 0.00 0.00 0.00 2.44
5931 6601 2.314071 TCTACTCCTTCCGTCCCAAA 57.686 50.000 0.00 0.00 0.00 3.28
5932 6602 2.024273 AGATCTACTCCTTCCGTCCCAA 60.024 50.000 0.00 0.00 0.00 4.12
5933 6603 1.569548 AGATCTACTCCTTCCGTCCCA 59.430 52.381 0.00 0.00 0.00 4.37
5934 6604 2.368311 AGATCTACTCCTTCCGTCCC 57.632 55.000 0.00 0.00 0.00 4.46
5935 6605 4.828387 ACATAAGATCTACTCCTTCCGTCC 59.172 45.833 0.00 0.00 0.00 4.79
5936 6606 5.278561 CCACATAAGATCTACTCCTTCCGTC 60.279 48.000 0.00 0.00 0.00 4.79
5937 6607 4.585162 CCACATAAGATCTACTCCTTCCGT 59.415 45.833 0.00 0.00 0.00 4.69
5938 6608 4.585162 ACCACATAAGATCTACTCCTTCCG 59.415 45.833 0.00 0.00 0.00 4.30
5939 6609 6.487299 AACCACATAAGATCTACTCCTTCC 57.513 41.667 0.00 0.00 0.00 3.46
5940 6610 8.240267 ACTAACCACATAAGATCTACTCCTTC 57.760 38.462 0.00 0.00 0.00 3.46
5941 6611 8.062536 AGACTAACCACATAAGATCTACTCCTT 58.937 37.037 0.00 0.00 0.00 3.36
5942 6612 7.588169 AGACTAACCACATAAGATCTACTCCT 58.412 38.462 0.00 0.00 0.00 3.69
5943 6613 7.826918 AGACTAACCACATAAGATCTACTCC 57.173 40.000 0.00 0.00 0.00 3.85
6137 6807 8.346300 CAACCAAAATACACACATACAACTGTA 58.654 33.333 0.00 0.00 34.67 2.74
6180 6852 6.017109 ACACAACAAGAGATGACCAAACATAC 60.017 38.462 0.00 0.00 0.00 2.39
6206 6878 4.403113 CCTACTCTCTCCAAAACCTAGGAC 59.597 50.000 17.98 0.00 0.00 3.85
6207 6879 4.572223 CCCTACTCTCTCCAAAACCTAGGA 60.572 50.000 17.98 0.00 0.00 2.94
6208 6880 3.707102 CCCTACTCTCTCCAAAACCTAGG 59.293 52.174 7.41 7.41 0.00 3.02
6313 6985 7.502060 AGATCTAGGATTTCTCACTTTTGGA 57.498 36.000 0.00 0.00 0.00 3.53
6430 7257 6.969993 ACCATAGGCACTGTTTAAAAAGAA 57.030 33.333 12.50 0.00 41.52 2.52
6521 7349 3.634397 TTATGGTCAGAGCCTTGAAGG 57.366 47.619 6.92 6.92 38.80 3.46
6550 7378 4.893424 TCATGAATCTGCACATGTCATG 57.107 40.909 11.41 11.41 44.46 3.07
6565 7393 2.957402 AGCTTGGGACAGTTCATGAA 57.043 45.000 3.38 3.38 42.39 2.57
6779 7616 5.633830 ATTCAGGAAACTTGTGCACATAG 57.366 39.130 22.39 21.17 40.21 2.23
6972 7809 1.408702 GCCAGTGTTTTTGCCTCTGAA 59.591 47.619 0.00 0.00 0.00 3.02
7015 7852 0.873743 GATGAGCTGTCGGCAGTAGC 60.874 60.000 19.84 5.08 44.32 3.58
7072 7909 1.738474 AGCTGCATCAGATGGGGATA 58.262 50.000 12.54 0.00 32.44 2.59
7249 8087 1.874466 GTAGAGTCGCCGAAGCTGC 60.874 63.158 0.00 0.00 36.60 5.25
7262 8100 0.460987 CTTCCTTGGCTGCGGTAGAG 60.461 60.000 0.00 0.00 0.00 2.43
7395 8233 1.153745 GACGGCTCGATCAACAGCT 60.154 57.895 7.92 0.00 35.82 4.24
7400 8238 0.679960 TGGAGAGACGGCTCGATCAA 60.680 55.000 13.84 0.00 45.98 2.57
7401 8239 1.077716 TGGAGAGACGGCTCGATCA 60.078 57.895 13.84 9.86 45.98 2.92
7402 8240 1.098712 ACTGGAGAGACGGCTCGATC 61.099 60.000 13.84 5.72 45.98 3.69
7403 8241 1.077357 ACTGGAGAGACGGCTCGAT 60.077 57.895 13.84 0.00 45.98 3.59
7464 8307 6.590068 TCCATTGGTGAAAAATGTTGTCAAT 58.410 32.000 1.86 0.00 33.93 2.57
7630 8479 5.741011 AGCTTCATGTCCGATTAGGTTAAA 58.259 37.500 0.00 0.00 41.99 1.52
7658 8507 4.374399 AGAGCCAATGAAAAACAAGCTTG 58.626 39.130 24.84 24.84 34.94 4.01
7665 8514 4.488879 CCTAGCAAGAGCCAATGAAAAAC 58.511 43.478 0.00 0.00 43.56 2.43
7666 8515 3.511146 CCCTAGCAAGAGCCAATGAAAAA 59.489 43.478 0.00 0.00 43.56 1.94
7768 8825 4.093743 GGGCCCTTTCCAAGAATAAGAAA 58.906 43.478 17.04 0.00 0.00 2.52
7769 8826 3.336694 AGGGCCCTTTCCAAGAATAAGAA 59.663 43.478 22.28 0.00 0.00 2.52
7770 8827 2.926329 AGGGCCCTTTCCAAGAATAAGA 59.074 45.455 22.28 0.00 0.00 2.10
7771 8828 3.026694 CAGGGCCCTTTCCAAGAATAAG 58.973 50.000 26.10 1.09 0.00 1.73
7772 8829 2.381961 ACAGGGCCCTTTCCAAGAATAA 59.618 45.455 26.10 0.00 0.00 1.40
7773 8830 2.000048 ACAGGGCCCTTTCCAAGAATA 59.000 47.619 26.10 0.00 0.00 1.75
7774 8831 0.786435 ACAGGGCCCTTTCCAAGAAT 59.214 50.000 26.10 0.00 0.00 2.40
7775 8832 0.560688 AACAGGGCCCTTTCCAAGAA 59.439 50.000 26.10 0.00 0.00 2.52
7776 8833 0.560688 AAACAGGGCCCTTTCCAAGA 59.439 50.000 26.10 0.00 0.00 3.02
7777 8834 1.344438 GAAAACAGGGCCCTTTCCAAG 59.656 52.381 26.10 13.02 0.00 3.61
7778 8835 1.062505 AGAAAACAGGGCCCTTTCCAA 60.063 47.619 26.10 0.00 30.83 3.53
7779 8836 0.560688 AGAAAACAGGGCCCTTTCCA 59.439 50.000 26.10 0.00 30.83 3.53
7780 8837 1.344438 CAAGAAAACAGGGCCCTTTCC 59.656 52.381 26.10 1.87 30.83 3.13
7781 8838 2.297315 CTCAAGAAAACAGGGCCCTTTC 59.703 50.000 26.10 23.83 0.00 2.62
7782 8839 2.319844 CTCAAGAAAACAGGGCCCTTT 58.680 47.619 26.10 15.13 0.00 3.11
7783 8840 1.217942 ACTCAAGAAAACAGGGCCCTT 59.782 47.619 26.10 7.77 0.00 3.95
7784 8841 0.853530 ACTCAAGAAAACAGGGCCCT 59.146 50.000 22.28 22.28 0.00 5.19
7785 8842 1.341209 CAACTCAAGAAAACAGGGCCC 59.659 52.381 16.46 16.46 0.00 5.80
7786 8843 1.341209 CCAACTCAAGAAAACAGGGCC 59.659 52.381 0.00 0.00 0.00 5.80
7787 8844 2.306847 TCCAACTCAAGAAAACAGGGC 58.693 47.619 0.00 0.00 0.00 5.19
7788 8845 4.202151 CCTTTCCAACTCAAGAAAACAGGG 60.202 45.833 0.00 0.00 31.91 4.45
7789 8846 4.202151 CCCTTTCCAACTCAAGAAAACAGG 60.202 45.833 0.00 0.00 31.91 4.00
7790 8847 4.644685 TCCCTTTCCAACTCAAGAAAACAG 59.355 41.667 0.00 0.00 31.91 3.16
7791 8848 4.401202 GTCCCTTTCCAACTCAAGAAAACA 59.599 41.667 0.00 0.00 31.91 2.83
7792 8849 4.401202 TGTCCCTTTCCAACTCAAGAAAAC 59.599 41.667 0.00 0.00 31.91 2.43
7793 8850 4.605183 TGTCCCTTTCCAACTCAAGAAAA 58.395 39.130 0.00 0.00 31.91 2.29
7794 8851 4.243793 TGTCCCTTTCCAACTCAAGAAA 57.756 40.909 0.00 0.00 0.00 2.52
7795 8852 3.943671 TGTCCCTTTCCAACTCAAGAA 57.056 42.857 0.00 0.00 0.00 2.52
7796 8853 3.138283 ACATGTCCCTTTCCAACTCAAGA 59.862 43.478 0.00 0.00 0.00 3.02
7797 8854 3.490348 ACATGTCCCTTTCCAACTCAAG 58.510 45.455 0.00 0.00 0.00 3.02
7798 8855 3.593442 ACATGTCCCTTTCCAACTCAA 57.407 42.857 0.00 0.00 0.00 3.02
7799 8856 3.593442 AACATGTCCCTTTCCAACTCA 57.407 42.857 0.00 0.00 0.00 3.41
7800 8857 4.010349 CCTAACATGTCCCTTTCCAACTC 58.990 47.826 0.00 0.00 0.00 3.01
7801 8858 3.245264 CCCTAACATGTCCCTTTCCAACT 60.245 47.826 0.00 0.00 0.00 3.16
7802 8859 3.089284 CCCTAACATGTCCCTTTCCAAC 58.911 50.000 0.00 0.00 0.00 3.77
7803 8860 2.042433 CCCCTAACATGTCCCTTTCCAA 59.958 50.000 0.00 0.00 0.00 3.53
7804 8861 1.638589 CCCCTAACATGTCCCTTTCCA 59.361 52.381 0.00 0.00 0.00 3.53
7805 8862 1.920351 TCCCCTAACATGTCCCTTTCC 59.080 52.381 0.00 0.00 0.00 3.13
7806 8863 2.576648 ACTCCCCTAACATGTCCCTTTC 59.423 50.000 0.00 0.00 0.00 2.62
7807 8864 2.308866 CACTCCCCTAACATGTCCCTTT 59.691 50.000 0.00 0.00 0.00 3.11
7808 8865 1.916181 CACTCCCCTAACATGTCCCTT 59.084 52.381 0.00 0.00 0.00 3.95
7809 8866 1.203440 ACACTCCCCTAACATGTCCCT 60.203 52.381 0.00 0.00 0.00 4.20
7810 8867 1.065418 CACACTCCCCTAACATGTCCC 60.065 57.143 0.00 0.00 0.00 4.46
7811 8868 1.906574 TCACACTCCCCTAACATGTCC 59.093 52.381 0.00 0.00 0.00 4.02
7812 8869 3.695830 TTCACACTCCCCTAACATGTC 57.304 47.619 0.00 0.00 0.00 3.06
7813 8870 4.657814 AATTCACACTCCCCTAACATGT 57.342 40.909 0.00 0.00 0.00 3.21
7814 8871 5.476599 TGAAAATTCACACTCCCCTAACATG 59.523 40.000 0.00 0.00 31.01 3.21
7815 8872 5.640147 TGAAAATTCACACTCCCCTAACAT 58.360 37.500 0.00 0.00 31.01 2.71
7816 8873 5.055265 TGAAAATTCACACTCCCCTAACA 57.945 39.130 0.00 0.00 31.01 2.41
7817 8874 5.313712 TCTGAAAATTCACACTCCCCTAAC 58.686 41.667 0.00 0.00 32.90 2.34
7818 8875 5.514834 CCTCTGAAAATTCACACTCCCCTAA 60.515 44.000 0.00 0.00 32.90 2.69
7819 8876 4.019321 CCTCTGAAAATTCACACTCCCCTA 60.019 45.833 0.00 0.00 32.90 3.53
7820 8877 3.245052 CCTCTGAAAATTCACACTCCCCT 60.245 47.826 0.00 0.00 32.90 4.79
7821 8878 3.084786 CCTCTGAAAATTCACACTCCCC 58.915 50.000 0.00 0.00 32.90 4.81
7822 8879 3.753797 GTCCTCTGAAAATTCACACTCCC 59.246 47.826 0.00 0.00 32.90 4.30
7823 8880 3.433615 CGTCCTCTGAAAATTCACACTCC 59.566 47.826 0.00 0.00 32.90 3.85
7824 8881 3.433615 CCGTCCTCTGAAAATTCACACTC 59.566 47.826 0.00 0.00 32.90 3.51
7825 8882 3.403038 CCGTCCTCTGAAAATTCACACT 58.597 45.455 0.00 0.00 32.90 3.55
7826 8883 2.484264 CCCGTCCTCTGAAAATTCACAC 59.516 50.000 0.00 0.00 32.90 3.82
7827 8884 2.778299 CCCGTCCTCTGAAAATTCACA 58.222 47.619 0.00 0.00 32.90 3.58
7828 8885 1.468914 GCCCGTCCTCTGAAAATTCAC 59.531 52.381 0.00 0.00 32.90 3.18
7829 8886 1.351017 AGCCCGTCCTCTGAAAATTCA 59.649 47.619 0.00 0.00 35.57 2.57
7830 8887 2.010497 GAGCCCGTCCTCTGAAAATTC 58.990 52.381 0.00 0.00 0.00 2.17
7831 8888 1.340114 GGAGCCCGTCCTCTGAAAATT 60.340 52.381 0.46 0.00 42.99 1.82
7832 8889 0.253327 GGAGCCCGTCCTCTGAAAAT 59.747 55.000 0.46 0.00 42.99 1.82
7833 8890 1.677552 GGAGCCCGTCCTCTGAAAA 59.322 57.895 0.46 0.00 42.99 2.29
7834 8891 3.388841 GGAGCCCGTCCTCTGAAA 58.611 61.111 0.46 0.00 42.99 2.69
7917 8974 9.194972 TGCAAAATACATATAAGTTTCCATGGA 57.805 29.630 11.44 11.44 0.00 3.41
7918 8975 9.985730 ATGCAAAATACATATAAGTTTCCATGG 57.014 29.630 4.97 4.97 0.00 3.66
7930 8987 9.304731 GTTCACACATTCATGCAAAATACATAT 57.695 29.630 0.00 0.00 0.00 1.78
7931 8988 8.302438 TGTTCACACATTCATGCAAAATACATA 58.698 29.630 0.00 0.00 0.00 2.29
7932 8989 7.153315 TGTTCACACATTCATGCAAAATACAT 58.847 30.769 0.00 0.00 0.00 2.29
7933 8990 6.510536 TGTTCACACATTCATGCAAAATACA 58.489 32.000 0.00 0.00 0.00 2.29
7934 8991 7.405469 TTGTTCACACATTCATGCAAAATAC 57.595 32.000 0.00 0.00 31.06 1.89
7935 8992 8.604640 ATTTGTTCACACATTCATGCAAAATA 57.395 26.923 0.00 0.00 31.06 1.40
7936 8993 6.922247 TTTGTTCACACATTCATGCAAAAT 57.078 29.167 0.00 0.00 31.06 1.82
7937 8994 6.292221 CGATTTGTTCACACATTCATGCAAAA 60.292 34.615 0.00 0.00 31.06 2.44
7938 8995 5.175308 CGATTTGTTCACACATTCATGCAAA 59.825 36.000 0.00 0.00 31.06 3.68
7939 8996 4.680567 CGATTTGTTCACACATTCATGCAA 59.319 37.500 0.00 0.00 31.06 4.08
7940 8997 4.228317 CGATTTGTTCACACATTCATGCA 58.772 39.130 0.00 0.00 31.06 3.96
7941 8998 4.229096 ACGATTTGTTCACACATTCATGC 58.771 39.130 0.00 0.00 31.06 4.06
7942 8999 5.914074 TCAACGATTTGTTCACACATTCATG 59.086 36.000 0.00 0.00 39.29 3.07
7943 9000 6.070897 TCAACGATTTGTTCACACATTCAT 57.929 33.333 0.00 0.00 39.29 2.57
7944 9001 5.491635 TCAACGATTTGTTCACACATTCA 57.508 34.783 0.00 0.00 39.29 2.57
7945 9002 6.804534 TTTCAACGATTTGTTCACACATTC 57.195 33.333 0.00 0.00 39.29 2.67
7946 9003 7.769272 ATTTTCAACGATTTGTTCACACATT 57.231 28.000 0.00 0.00 39.29 2.71
7947 9004 9.474920 AATATTTTCAACGATTTGTTCACACAT 57.525 25.926 0.00 0.00 39.29 3.21
7948 9005 8.864069 AATATTTTCAACGATTTGTTCACACA 57.136 26.923 0.00 0.00 39.29 3.72
7960 9017 9.944663 GCCTACAAATCATAATATTTTCAACGA 57.055 29.630 0.00 0.00 0.00 3.85
7961 9018 9.950680 AGCCTACAAATCATAATATTTTCAACG 57.049 29.630 0.00 0.00 0.00 4.10
7965 9022 9.185192 GCACAGCCTACAAATCATAATATTTTC 57.815 33.333 0.00 0.00 0.00 2.29
7966 9023 8.694540 TGCACAGCCTACAAATCATAATATTTT 58.305 29.630 0.00 0.00 0.00 1.82
7967 9024 8.236585 TGCACAGCCTACAAATCATAATATTT 57.763 30.769 0.00 0.00 0.00 1.40
7968 9025 7.822161 TGCACAGCCTACAAATCATAATATT 57.178 32.000 0.00 0.00 0.00 1.28
7969 9026 7.822161 TTGCACAGCCTACAAATCATAATAT 57.178 32.000 0.00 0.00 0.00 1.28
7970 9027 7.637631 TTTGCACAGCCTACAAATCATAATA 57.362 32.000 0.00 0.00 0.00 0.98
7971 9028 6.528537 TTTGCACAGCCTACAAATCATAAT 57.471 33.333 0.00 0.00 0.00 1.28
7972 9029 5.973899 TTTGCACAGCCTACAAATCATAA 57.026 34.783 0.00 0.00 0.00 1.90
7973 9030 5.973899 TTTTGCACAGCCTACAAATCATA 57.026 34.783 0.00 0.00 33.62 2.15
7974 9031 4.870123 TTTTGCACAGCCTACAAATCAT 57.130 36.364 0.00 0.00 33.62 2.45
7975 9032 4.662468 TTTTTGCACAGCCTACAAATCA 57.338 36.364 0.00 0.00 33.62 2.57
7993 9050 8.286191 TGTTATTGGGCTGAAATTTTGTTTTT 57.714 26.923 0.00 0.00 0.00 1.94
7994 9051 7.872113 TGTTATTGGGCTGAAATTTTGTTTT 57.128 28.000 0.00 0.00 0.00 2.43
7995 9052 7.872113 TTGTTATTGGGCTGAAATTTTGTTT 57.128 28.000 0.00 0.00 0.00 2.83
7996 9053 7.872113 TTTGTTATTGGGCTGAAATTTTGTT 57.128 28.000 0.00 0.00 0.00 2.83
7997 9054 7.872113 TTTTGTTATTGGGCTGAAATTTTGT 57.128 28.000 0.00 0.00 0.00 2.83
8021 9078 7.424803 GCATTTTTAAAATGGGCAGACTTTTT 58.575 30.769 25.62 0.00 33.82 1.94
8022 9079 6.293353 CGCATTTTTAAAATGGGCAGACTTTT 60.293 34.615 26.27 0.00 34.58 2.27
8023 9080 5.179182 CGCATTTTTAAAATGGGCAGACTTT 59.821 36.000 26.27 0.00 34.58 2.66
8024 9081 4.690280 CGCATTTTTAAAATGGGCAGACTT 59.310 37.500 26.27 0.00 34.58 3.01
8025 9082 4.244862 CGCATTTTTAAAATGGGCAGACT 58.755 39.130 26.27 0.00 34.58 3.24
8026 9083 3.993736 ACGCATTTTTAAAATGGGCAGAC 59.006 39.130 32.66 16.05 42.25 3.51
8027 9084 4.264460 ACGCATTTTTAAAATGGGCAGA 57.736 36.364 32.66 0.00 42.25 4.26
8028 9085 6.660887 AATACGCATTTTTAAAATGGGCAG 57.339 33.333 32.66 18.07 42.25 4.85
8029 9086 6.621596 GCAAATACGCATTTTTAAAATGGGCA 60.622 34.615 32.66 25.86 42.25 5.36
8030 9087 5.736824 GCAAATACGCATTTTTAAAATGGGC 59.263 36.000 32.66 19.50 42.25 5.36
8031 9088 6.093357 AGGCAAATACGCATTTTTAAAATGGG 59.907 34.615 31.74 31.74 43.55 4.00
8032 9089 6.960431 CAGGCAAATACGCATTTTTAAAATGG 59.040 34.615 25.62 19.07 31.82 3.16
8033 9090 7.517321 ACAGGCAAATACGCATTTTTAAAATG 58.483 30.769 21.93 21.93 31.82 2.32
8034 9091 7.665561 ACAGGCAAATACGCATTTTTAAAAT 57.334 28.000 0.55 0.00 31.82 1.82
8035 9092 7.484035 AACAGGCAAATACGCATTTTTAAAA 57.516 28.000 0.00 0.00 31.82 1.52
8036 9093 7.484035 AAACAGGCAAATACGCATTTTTAAA 57.516 28.000 0.00 0.00 31.82 1.52
8037 9094 7.011482 ACAAAACAGGCAAATACGCATTTTTAA 59.989 29.630 0.00 0.00 31.82 1.52
8038 9095 6.480320 ACAAAACAGGCAAATACGCATTTTTA 59.520 30.769 0.00 0.00 31.82 1.52
8039 9096 5.295540 ACAAAACAGGCAAATACGCATTTTT 59.704 32.000 0.00 0.00 31.82 1.94
8040 9097 4.813697 ACAAAACAGGCAAATACGCATTTT 59.186 33.333 0.00 0.00 31.82 1.82
8041 9098 4.210955 CACAAAACAGGCAAATACGCATTT 59.789 37.500 0.00 0.00 34.60 2.32
8042 9099 3.740321 CACAAAACAGGCAAATACGCATT 59.260 39.130 0.00 0.00 0.00 3.56
8043 9100 3.243704 ACACAAAACAGGCAAATACGCAT 60.244 39.130 0.00 0.00 0.00 4.73
8044 9101 2.099921 ACACAAAACAGGCAAATACGCA 59.900 40.909 0.00 0.00 0.00 5.24
8045 9102 2.738135 ACACAAAACAGGCAAATACGC 58.262 42.857 0.00 0.00 0.00 4.42
8046 9103 3.903644 CGTACACAAAACAGGCAAATACG 59.096 43.478 0.00 0.00 0.00 3.06
8047 9104 3.666797 GCGTACACAAAACAGGCAAATAC 59.333 43.478 0.00 0.00 0.00 1.89
8048 9105 3.304794 GGCGTACACAAAACAGGCAAATA 60.305 43.478 0.00 0.00 0.00 1.40
8049 9106 2.544903 GGCGTACACAAAACAGGCAAAT 60.545 45.455 0.00 0.00 0.00 2.32
8050 9107 1.202313 GGCGTACACAAAACAGGCAAA 60.202 47.619 0.00 0.00 0.00 3.68
8051 9108 0.382515 GGCGTACACAAAACAGGCAA 59.617 50.000 0.00 0.00 0.00 4.52
8052 9109 0.748367 TGGCGTACACAAAACAGGCA 60.748 50.000 0.00 0.00 0.00 4.75
8053 9110 0.596082 ATGGCGTACACAAAACAGGC 59.404 50.000 0.00 0.00 0.00 4.85
8054 9111 1.606668 ACATGGCGTACACAAAACAGG 59.393 47.619 0.00 0.00 0.00 4.00
8055 9112 2.032799 ACACATGGCGTACACAAAACAG 59.967 45.455 0.00 0.00 0.00 3.16
8056 9113 2.017782 ACACATGGCGTACACAAAACA 58.982 42.857 0.00 0.00 0.00 2.83
8057 9114 2.032302 TCACACATGGCGTACACAAAAC 59.968 45.455 0.00 0.00 0.00 2.43
8058 9115 2.289565 TCACACATGGCGTACACAAAA 58.710 42.857 0.00 0.00 0.00 2.44
8059 9116 1.954927 TCACACATGGCGTACACAAA 58.045 45.000 0.00 0.00 0.00 2.83
8060 9117 1.954927 TTCACACATGGCGTACACAA 58.045 45.000 0.00 0.00 0.00 3.33
8061 9118 1.954927 TTTCACACATGGCGTACACA 58.045 45.000 0.00 0.00 0.00 3.72
8062 9119 3.552604 AATTTCACACATGGCGTACAC 57.447 42.857 0.00 0.00 0.00 2.90
8063 9120 7.497579 AGAATATAATTTCACACATGGCGTACA 59.502 33.333 0.00 0.00 0.00 2.90
8064 9121 7.861630 AGAATATAATTTCACACATGGCGTAC 58.138 34.615 0.00 0.00 0.00 3.67
8065 9122 8.445275 AAGAATATAATTTCACACATGGCGTA 57.555 30.769 0.00 0.00 0.00 4.42
8066 9123 6.942532 AGAATATAATTTCACACATGGCGT 57.057 33.333 0.00 0.00 0.00 5.68
8067 9124 9.333497 CATAAGAATATAATTTCACACATGGCG 57.667 33.333 0.00 0.00 0.00 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.