Multiple sequence alignment - TraesCS4D01G012600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G012600 chr4D 100.000 3694 0 0 1 3694 5811181 5814874 0.000000e+00 6822.0
1 TraesCS4D01G012600 chr4A 94.283 2484 88 15 465 2895 597726518 597724036 0.000000e+00 3751.0
2 TraesCS4D01G012600 chr4A 95.770 662 25 3 2936 3595 597723790 597723130 0.000000e+00 1064.0
3 TraesCS4D01G012600 chr4A 93.893 131 8 0 3564 3694 597723105 597722975 8.090000e-47 198.0
4 TraesCS4D01G012600 chr4A 88.608 79 7 2 3562 3640 400761554 400761478 1.090000e-15 95.3
5 TraesCS4D01G012600 chr4A 97.436 39 1 0 3654 3692 660149856 660149818 2.380000e-07 67.6
6 TraesCS4D01G012600 chr4B 92.818 2534 104 33 443 2906 10516437 10518962 0.000000e+00 3600.0
7 TraesCS4D01G012600 chr4B 93.623 737 46 1 1595 2331 10532501 10533236 0.000000e+00 1099.0
8 TraesCS4D01G012600 chr4B 95.915 661 22 4 2936 3595 10519177 10519833 0.000000e+00 1066.0
9 TraesCS4D01G012600 chr4B 87.127 637 40 12 2329 2938 10536746 10537367 0.000000e+00 684.0
10 TraesCS4D01G012600 chr4B 94.574 129 6 1 3566 3694 10520204 10520331 8.090000e-47 198.0
11 TraesCS4D01G012600 chr7B 95.778 379 11 3 2936 3309 16088117 16087739 1.130000e-169 606.0
12 TraesCS4D01G012600 chr7B 91.586 309 23 3 140 445 728122408 728122716 1.230000e-114 424.0
13 TraesCS4D01G012600 chr7B 94.258 209 11 1 2730 2938 16088555 16088348 5.950000e-83 318.0
14 TraesCS4D01G012600 chr6B 95.515 379 12 3 2936 3309 96107184 96107562 5.280000e-168 601.0
15 TraesCS4D01G012600 chr6B 94.709 378 16 3 2936 3309 219822881 219822504 5.320000e-163 584.0
16 TraesCS4D01G012600 chr6B 93.780 209 13 0 2730 2938 219823320 219823112 7.700000e-82 315.0
17 TraesCS4D01G012600 chr6B 93.780 209 12 1 2730 2938 96106746 96106953 2.770000e-81 313.0
18 TraesCS4D01G012600 chr6B 94.521 73 3 1 2866 2938 711118076 711118005 1.080000e-20 111.0
19 TraesCS4D01G012600 chr6B 100.000 34 0 0 3659 3692 617809842 617809875 3.080000e-06 63.9
20 TraesCS4D01G012600 chr5B 95.238 378 14 3 2936 3309 287634281 287634658 2.460000e-166 595.0
21 TraesCS4D01G012600 chr5B 93.780 209 12 1 2730 2938 287633843 287634050 2.770000e-81 313.0
22 TraesCS4D01G012600 chr7D 91.531 307 24 2 140 444 141345336 141345642 4.410000e-114 422.0
23 TraesCS4D01G012600 chr7D 91.419 303 24 2 138 439 49806896 49806595 7.380000e-112 414.0
24 TraesCS4D01G012600 chr7D 100.000 34 0 0 3659 3692 366610169 366610136 3.080000e-06 63.9
25 TraesCS4D01G012600 chr7D 97.143 35 1 0 3658 3692 257512119 257512085 3.980000e-05 60.2
26 TraesCS4D01G012600 chr2D 91.722 302 23 2 140 439 618294475 618294776 5.710000e-113 418.0
27 TraesCS4D01G012600 chr1B 91.694 301 24 1 140 439 484457856 484457556 2.050000e-112 416.0
28 TraesCS4D01G012600 chr1B 91.694 301 22 3 142 439 683991873 683992173 7.380000e-112 414.0
29 TraesCS4D01G012600 chr2B 90.939 309 26 2 140 446 798707257 798707565 7.380000e-112 414.0
30 TraesCS4D01G012600 chr5D 91.205 307 22 5 137 439 120920778 120921083 2.650000e-111 412.0
31 TraesCS4D01G012600 chr3B 90.820 305 26 2 140 443 119949700 119950003 1.240000e-109 407.0
32 TraesCS4D01G012600 chr7A 94.186 86 5 0 1256 1341 549411416 549411331 8.320000e-27 132.0
33 TraesCS4D01G012600 chr7A 92.500 80 6 0 1256 1335 705593513 705593592 8.380000e-22 115.0
34 TraesCS4D01G012600 chr7A 97.368 38 0 1 3658 3694 153261487 153261450 3.080000e-06 63.9
35 TraesCS4D01G012600 chr7A 97.222 36 0 1 3658 3692 48296443 48296408 3.980000e-05 60.2
36 TraesCS4D01G012600 chr6A 98.611 72 1 0 1651 1722 601396095 601396166 1.080000e-25 128.0
37 TraesCS4D01G012600 chr6A 91.954 87 5 2 1256 1341 601395938 601396023 1.800000e-23 121.0
38 TraesCS4D01G012600 chr3A 98.462 65 1 0 1662 1726 28479273 28479209 8.380000e-22 115.0
39 TraesCS4D01G012600 chr3A 98.462 65 1 0 1662 1726 34058451 34058387 8.380000e-22 115.0
40 TraesCS4D01G012600 chr3A 95.833 72 2 1 1662 1732 34260212 34260141 8.380000e-22 115.0
41 TraesCS4D01G012600 chr3A 92.405 79 6 0 1256 1334 652108967 652108889 3.020000e-21 113.0
42 TraesCS4D01G012600 chr3A 94.444 72 3 1 1651 1722 652108810 652108740 3.900000e-20 110.0
43 TraesCS4D01G012600 chr5A 94.595 74 1 2 1662 1732 637620466 637620393 1.080000e-20 111.0
44 TraesCS4D01G012600 chr1A 97.222 36 0 1 3658 3692 375114946 375114911 3.980000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G012600 chr4D 5811181 5814874 3693 False 6822.000000 6822 100.000000 1 3694 1 chr4D.!!$F1 3693
1 TraesCS4D01G012600 chr4A 597722975 597726518 3543 True 1671.000000 3751 94.648667 465 3694 3 chr4A.!!$R3 3229
2 TraesCS4D01G012600 chr4B 10516437 10520331 3894 False 1621.333333 3600 94.435667 443 3694 3 chr4B.!!$F1 3251
3 TraesCS4D01G012600 chr4B 10532501 10537367 4866 False 891.500000 1099 90.375000 1595 2938 2 chr4B.!!$F2 1343
4 TraesCS4D01G012600 chr7B 16087739 16088555 816 True 462.000000 606 95.018000 2730 3309 2 chr7B.!!$R1 579
5 TraesCS4D01G012600 chr6B 96106746 96107562 816 False 457.000000 601 94.647500 2730 3309 2 chr6B.!!$F2 579
6 TraesCS4D01G012600 chr6B 219822504 219823320 816 True 449.500000 584 94.244500 2730 3309 2 chr6B.!!$R2 579
7 TraesCS4D01G012600 chr5B 287633843 287634658 815 False 454.000000 595 94.509000 2730 3309 2 chr5B.!!$F1 579

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
250 251 0.035598 TGTTTCAGGATTTCCGGCGA 59.964 50.0 9.30 0.0 42.08 5.54 F
390 391 0.036765 GTGTGCGTTCATAGGGGTGA 60.037 55.0 0.00 0.0 0.00 4.02 F
391 392 0.249120 TGTGCGTTCATAGGGGTGAG 59.751 55.0 0.00 0.0 0.00 3.51 F
424 425 0.249322 ATATTAGCGCTTGCGTCCGT 60.249 50.0 18.68 0.0 45.69 4.69 F
426 427 0.249322 ATTAGCGCTTGCGTCCGTAT 60.249 50.0 18.68 0.0 45.69 3.06 F
428 429 0.381445 TAGCGCTTGCGTCCGTATTA 59.619 50.0 18.68 0.0 45.69 0.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1800 1861 0.545548 AGGAACCGGAGAAGGAAGCT 60.546 55.000 9.46 0.0 34.73 3.74 R
1839 1903 2.285743 GTCTTGCCCTCCCTCCCT 60.286 66.667 0.00 0.0 0.00 4.20 R
2562 6138 4.416601 CCCTTCCTCCCCCTCCGT 62.417 72.222 0.00 0.0 0.00 4.69 R
2580 6156 2.819595 CGTATGGCGCCACTGCTT 60.820 61.111 35.50 19.1 34.43 3.91 R
2586 6162 4.823419 CCGAACCGTATGGCGCCA 62.823 66.667 34.80 34.8 39.70 5.69 R
2751 6354 1.874872 ACCACGGTAAAAACACATCGG 59.125 47.619 0.00 0.0 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 6.975196 AAAAAGCCTTGGCCAAATTATTTT 57.025 29.167 20.91 19.43 0.00 1.82
33 34 6.975196 AAAAGCCTTGGCCAAATTATTTTT 57.025 29.167 20.91 17.00 0.00 1.94
34 35 8.470657 AAAAAGCCTTGGCCAAATTATTTTTA 57.529 26.923 25.93 4.36 0.00 1.52
35 36 7.447374 AAAGCCTTGGCCAAATTATTTTTAC 57.553 32.000 20.91 0.00 0.00 2.01
36 37 5.175127 AGCCTTGGCCAAATTATTTTTACG 58.825 37.500 20.91 2.67 0.00 3.18
37 38 4.201773 GCCTTGGCCAAATTATTTTTACGC 60.202 41.667 20.91 3.07 0.00 4.42
38 39 4.032331 CCTTGGCCAAATTATTTTTACGCG 59.968 41.667 20.91 3.53 0.00 6.01
39 40 4.436242 TGGCCAAATTATTTTTACGCGA 57.564 36.364 15.93 0.00 0.00 5.87
40 41 4.167268 TGGCCAAATTATTTTTACGCGAC 58.833 39.130 15.93 0.00 0.00 5.19
41 42 4.082679 TGGCCAAATTATTTTTACGCGACT 60.083 37.500 15.93 0.00 0.00 4.18
42 43 4.860352 GGCCAAATTATTTTTACGCGACTT 59.140 37.500 15.93 0.00 0.00 3.01
43 44 5.220135 GGCCAAATTATTTTTACGCGACTTG 60.220 40.000 15.93 0.00 0.00 3.16
44 45 5.343860 GCCAAATTATTTTTACGCGACTTGT 59.656 36.000 15.93 0.00 0.00 3.16
45 46 6.451960 GCCAAATTATTTTTACGCGACTTGTC 60.452 38.462 15.93 0.00 0.00 3.18
46 47 6.033091 CCAAATTATTTTTACGCGACTTGTCC 59.967 38.462 15.93 0.00 0.00 4.02
47 48 4.666928 TTATTTTTACGCGACTTGTCCC 57.333 40.909 15.93 0.00 0.00 4.46
48 49 2.243602 TTTTTACGCGACTTGTCCCT 57.756 45.000 15.93 0.00 0.00 4.20
49 50 3.383620 TTTTTACGCGACTTGTCCCTA 57.616 42.857 15.93 0.00 0.00 3.53
50 51 2.642139 TTTACGCGACTTGTCCCTAG 57.358 50.000 15.93 0.00 0.00 3.02
51 52 1.538047 TTACGCGACTTGTCCCTAGT 58.462 50.000 15.93 0.00 0.00 2.57
52 53 1.089920 TACGCGACTTGTCCCTAGTC 58.910 55.000 15.93 0.00 38.88 2.59
57 58 0.816373 GACTTGTCCCTAGTCGGTCC 59.184 60.000 0.00 0.00 33.39 4.46
58 59 0.614134 ACTTGTCCCTAGTCGGTCCC 60.614 60.000 0.00 0.00 0.00 4.46
59 60 0.613853 CTTGTCCCTAGTCGGTCCCA 60.614 60.000 0.00 0.00 0.00 4.37
60 61 0.178926 TTGTCCCTAGTCGGTCCCAA 60.179 55.000 0.00 0.00 0.00 4.12
61 62 0.042131 TGTCCCTAGTCGGTCCCAAT 59.958 55.000 0.00 0.00 0.00 3.16
62 63 0.464452 GTCCCTAGTCGGTCCCAATG 59.536 60.000 0.00 0.00 0.00 2.82
63 64 0.689745 TCCCTAGTCGGTCCCAATGG 60.690 60.000 0.00 0.00 0.00 3.16
64 65 0.981277 CCCTAGTCGGTCCCAATGGT 60.981 60.000 0.00 0.00 0.00 3.55
65 66 0.909623 CCTAGTCGGTCCCAATGGTT 59.090 55.000 0.00 0.00 0.00 3.67
66 67 1.280998 CCTAGTCGGTCCCAATGGTTT 59.719 52.381 0.00 0.00 0.00 3.27
67 68 2.502538 CCTAGTCGGTCCCAATGGTTTA 59.497 50.000 0.00 0.00 0.00 2.01
68 69 2.484742 AGTCGGTCCCAATGGTTTAC 57.515 50.000 0.00 0.00 0.00 2.01
69 70 1.982958 AGTCGGTCCCAATGGTTTACT 59.017 47.619 0.00 0.00 0.00 2.24
70 71 2.374170 AGTCGGTCCCAATGGTTTACTT 59.626 45.455 0.00 0.00 0.00 2.24
71 72 2.486592 GTCGGTCCCAATGGTTTACTTG 59.513 50.000 0.00 0.00 0.00 3.16
72 73 1.201414 CGGTCCCAATGGTTTACTTGC 59.799 52.381 0.00 0.00 0.00 4.01
73 74 1.548719 GGTCCCAATGGTTTACTTGCC 59.451 52.381 0.00 0.00 0.00 4.52
74 75 2.525368 GTCCCAATGGTTTACTTGCCT 58.475 47.619 0.00 0.00 0.00 4.75
75 76 2.897326 GTCCCAATGGTTTACTTGCCTT 59.103 45.455 0.00 0.00 0.00 4.35
76 77 3.323691 GTCCCAATGGTTTACTTGCCTTT 59.676 43.478 0.00 0.00 0.00 3.11
77 78 3.970640 TCCCAATGGTTTACTTGCCTTTT 59.029 39.130 0.00 0.00 0.00 2.27
78 79 4.410555 TCCCAATGGTTTACTTGCCTTTTT 59.589 37.500 0.00 0.00 0.00 1.94
121 122 2.336341 TGGCACAAAATGGACGACC 58.664 52.632 0.00 0.00 31.92 4.79
122 123 1.175983 TGGCACAAAATGGACGACCC 61.176 55.000 0.34 0.00 31.92 4.46
123 124 3.816819 TGGCACAAAATGGACGACCCA 62.817 52.381 0.34 2.41 43.44 4.51
133 134 3.722908 TGGACGACCCAAATATTCCAA 57.277 42.857 0.34 0.00 43.29 3.53
134 135 4.035612 TGGACGACCCAAATATTCCAAA 57.964 40.909 0.34 0.00 43.29 3.28
135 136 4.605183 TGGACGACCCAAATATTCCAAAT 58.395 39.130 0.34 0.00 43.29 2.32
136 137 4.400884 TGGACGACCCAAATATTCCAAATG 59.599 41.667 0.34 0.00 43.29 2.32
137 138 4.401202 GGACGACCCAAATATTCCAAATGT 59.599 41.667 0.00 0.00 34.14 2.71
138 139 5.323371 ACGACCCAAATATTCCAAATGTG 57.677 39.130 0.00 0.00 0.00 3.21
139 140 8.559576 GGACGACCCAAATATTCCAAATGTGG 62.560 46.154 0.00 0.00 39.69 4.17
140 141 4.441792 GACCCAAATATTCCAAATGTGGC 58.558 43.478 0.00 0.00 45.54 5.01
141 142 3.118811 ACCCAAATATTCCAAATGTGGCG 60.119 43.478 0.00 0.00 45.54 5.69
142 143 3.131933 CCCAAATATTCCAAATGTGGCGA 59.868 43.478 0.00 0.00 45.54 5.54
143 144 4.382470 CCCAAATATTCCAAATGTGGCGAA 60.382 41.667 0.00 0.00 45.54 4.70
144 145 4.566360 CCAAATATTCCAAATGTGGCGAAC 59.434 41.667 0.00 0.00 45.54 3.95
145 146 4.385358 AATATTCCAAATGTGGCGAACC 57.615 40.909 0.00 0.00 45.54 3.62
146 147 1.626686 ATTCCAAATGTGGCGAACCA 58.373 45.000 0.00 0.00 45.54 3.67
154 155 2.911928 TGGCGAACCAACCTGTGA 59.088 55.556 0.00 0.00 45.37 3.58
155 156 1.454104 TGGCGAACCAACCTGTGAT 59.546 52.632 0.00 0.00 45.37 3.06
156 157 0.179004 TGGCGAACCAACCTGTGATT 60.179 50.000 0.00 0.00 45.37 2.57
157 158 0.240945 GGCGAACCAACCTGTGATTG 59.759 55.000 0.00 0.00 35.26 2.67
166 167 4.970662 CAACCTGTGATTGGATGGTTAG 57.029 45.455 0.00 0.00 38.76 2.34
167 168 4.588899 CAACCTGTGATTGGATGGTTAGA 58.411 43.478 0.00 0.00 38.76 2.10
168 169 4.494091 ACCTGTGATTGGATGGTTAGAG 57.506 45.455 0.00 0.00 0.00 2.43
169 170 3.200825 ACCTGTGATTGGATGGTTAGAGG 59.799 47.826 0.00 0.00 0.00 3.69
170 171 3.434167 CCTGTGATTGGATGGTTAGAGGG 60.434 52.174 0.00 0.00 0.00 4.30
171 172 3.455910 CTGTGATTGGATGGTTAGAGGGA 59.544 47.826 0.00 0.00 0.00 4.20
172 173 3.199946 TGTGATTGGATGGTTAGAGGGAC 59.800 47.826 0.00 0.00 0.00 4.46
174 175 3.455910 TGATTGGATGGTTAGAGGGACTG 59.544 47.826 0.00 0.00 41.55 3.51
175 176 2.642171 TGGATGGTTAGAGGGACTGT 57.358 50.000 0.00 0.00 41.55 3.55
176 177 2.187958 TGGATGGTTAGAGGGACTGTG 58.812 52.381 0.00 0.00 41.55 3.66
177 178 1.486726 GGATGGTTAGAGGGACTGTGG 59.513 57.143 0.00 0.00 41.55 4.17
178 179 2.188817 GATGGTTAGAGGGACTGTGGT 58.811 52.381 0.00 0.00 41.55 4.16
179 180 3.371965 GATGGTTAGAGGGACTGTGGTA 58.628 50.000 0.00 0.00 41.55 3.25
180 181 3.484953 TGGTTAGAGGGACTGTGGTAT 57.515 47.619 0.00 0.00 41.55 2.73
181 182 3.371965 TGGTTAGAGGGACTGTGGTATC 58.628 50.000 0.00 0.00 41.55 2.24
182 183 2.699321 GGTTAGAGGGACTGTGGTATCC 59.301 54.545 0.00 0.00 41.55 2.59
187 188 2.221918 GGACTGTGGTATCCCCAGG 58.778 63.158 3.65 0.00 46.45 4.45
188 189 1.527370 GACTGTGGTATCCCCAGGC 59.473 63.158 3.65 0.00 46.45 4.85
189 190 1.984288 GACTGTGGTATCCCCAGGCC 61.984 65.000 0.00 0.00 46.45 5.19
190 191 2.000701 CTGTGGTATCCCCAGGCCA 61.001 63.158 5.01 0.00 46.45 5.36
191 192 1.308657 TGTGGTATCCCCAGGCCAT 60.309 57.895 5.01 0.00 46.45 4.40
192 193 0.923729 TGTGGTATCCCCAGGCCATT 60.924 55.000 5.01 0.00 46.45 3.16
193 194 1.145571 GTGGTATCCCCAGGCCATTA 58.854 55.000 5.01 0.00 46.45 1.90
194 195 1.073923 GTGGTATCCCCAGGCCATTAG 59.926 57.143 5.01 0.00 46.45 1.73
195 196 0.698818 GGTATCCCCAGGCCATTAGG 59.301 60.000 5.01 0.22 38.23 2.69
196 197 0.698818 GTATCCCCAGGCCATTAGGG 59.301 60.000 5.01 10.73 42.44 3.53
197 198 0.273781 TATCCCCAGGCCATTAGGGT 59.726 55.000 17.93 6.92 41.16 4.34
198 199 0.630478 ATCCCCAGGCCATTAGGGTT 60.630 55.000 17.93 8.88 41.16 4.11
199 200 1.230212 CCCCAGGCCATTAGGGTTC 59.770 63.158 17.93 0.00 41.16 3.62
200 201 1.580066 CCCCAGGCCATTAGGGTTCA 61.580 60.000 17.93 0.00 41.16 3.18
201 202 0.334676 CCCAGGCCATTAGGGTTCAA 59.665 55.000 5.01 0.00 39.65 2.69
202 203 1.686115 CCCAGGCCATTAGGGTTCAAG 60.686 57.143 5.01 0.00 39.65 3.02
203 204 1.005924 CCAGGCCATTAGGGTTCAAGT 59.994 52.381 5.01 0.00 39.65 3.16
204 205 2.369394 CAGGCCATTAGGGTTCAAGTC 58.631 52.381 5.01 0.00 39.65 3.01
205 206 1.285078 AGGCCATTAGGGTTCAAGTCC 59.715 52.381 5.01 0.00 39.65 3.85
206 207 1.285078 GGCCATTAGGGTTCAAGTCCT 59.715 52.381 0.00 0.00 39.65 3.85
207 208 2.369394 GCCATTAGGGTTCAAGTCCTG 58.631 52.381 0.00 0.00 39.65 3.86
208 209 2.945890 GCCATTAGGGTTCAAGTCCTGG 60.946 54.545 0.00 0.00 39.65 4.45
209 210 2.308866 CCATTAGGGTTCAAGTCCTGGT 59.691 50.000 0.00 0.00 34.75 4.00
210 211 3.347216 CATTAGGGTTCAAGTCCTGGTG 58.653 50.000 0.00 0.00 34.75 4.17
211 212 0.690762 TAGGGTTCAAGTCCTGGTGC 59.309 55.000 0.00 0.00 34.75 5.01
212 213 1.062488 AGGGTTCAAGTCCTGGTGCT 61.062 55.000 0.00 0.00 31.11 4.40
213 214 0.606673 GGGTTCAAGTCCTGGTGCTC 60.607 60.000 0.00 0.00 0.00 4.26
214 215 0.951040 GGTTCAAGTCCTGGTGCTCG 60.951 60.000 0.00 0.00 0.00 5.03
215 216 1.301716 TTCAAGTCCTGGTGCTCGC 60.302 57.895 0.00 0.00 0.00 5.03
216 217 2.031012 CAAGTCCTGGTGCTCGCA 59.969 61.111 0.00 0.00 0.00 5.10
217 218 1.376424 CAAGTCCTGGTGCTCGCAT 60.376 57.895 0.00 0.00 0.00 4.73
218 219 0.957395 CAAGTCCTGGTGCTCGCATT 60.957 55.000 0.00 0.00 0.00 3.56
219 220 0.250901 AAGTCCTGGTGCTCGCATTT 60.251 50.000 0.00 0.00 0.00 2.32
220 221 0.613260 AGTCCTGGTGCTCGCATTTA 59.387 50.000 0.00 0.00 0.00 1.40
221 222 1.210478 AGTCCTGGTGCTCGCATTTAT 59.790 47.619 0.00 0.00 0.00 1.40
222 223 2.017049 GTCCTGGTGCTCGCATTTATT 58.983 47.619 0.00 0.00 0.00 1.40
223 224 2.032178 GTCCTGGTGCTCGCATTTATTC 59.968 50.000 0.00 0.00 0.00 1.75
224 225 2.092968 TCCTGGTGCTCGCATTTATTCT 60.093 45.455 0.00 0.00 0.00 2.40
225 226 2.684881 CCTGGTGCTCGCATTTATTCTT 59.315 45.455 0.00 0.00 0.00 2.52
226 227 3.488047 CCTGGTGCTCGCATTTATTCTTG 60.488 47.826 0.00 0.00 0.00 3.02
227 228 3.342719 TGGTGCTCGCATTTATTCTTGA 58.657 40.909 0.00 0.00 0.00 3.02
228 229 3.755905 TGGTGCTCGCATTTATTCTTGAA 59.244 39.130 0.00 0.00 0.00 2.69
229 230 4.398988 TGGTGCTCGCATTTATTCTTGAAT 59.601 37.500 0.00 1.35 0.00 2.57
230 231 4.736793 GGTGCTCGCATTTATTCTTGAATG 59.263 41.667 6.15 0.00 36.56 2.67
231 232 5.335127 GTGCTCGCATTTATTCTTGAATGT 58.665 37.500 6.15 0.00 36.03 2.71
232 233 5.228635 GTGCTCGCATTTATTCTTGAATGTG 59.771 40.000 6.15 3.87 42.29 3.21
233 234 5.106197 TGCTCGCATTTATTCTTGAATGTGT 60.106 36.000 6.15 0.00 41.86 3.72
234 235 5.801947 GCTCGCATTTATTCTTGAATGTGTT 59.198 36.000 6.15 0.00 41.86 3.32
235 236 6.308766 GCTCGCATTTATTCTTGAATGTGTTT 59.691 34.615 6.15 0.00 41.86 2.83
236 237 7.461938 GCTCGCATTTATTCTTGAATGTGTTTC 60.462 37.037 6.15 0.00 41.86 2.78
237 238 7.366513 TCGCATTTATTCTTGAATGTGTTTCA 58.633 30.769 6.15 0.00 41.86 2.69
238 239 7.538334 TCGCATTTATTCTTGAATGTGTTTCAG 59.462 33.333 6.15 0.00 44.90 3.02
239 240 7.201376 CGCATTTATTCTTGAATGTGTTTCAGG 60.201 37.037 6.15 0.00 44.90 3.86
240 241 7.814107 GCATTTATTCTTGAATGTGTTTCAGGA 59.186 33.333 6.15 0.00 45.60 3.86
241 242 9.865321 CATTTATTCTTGAATGTGTTTCAGGAT 57.135 29.630 6.15 0.00 46.25 3.24
244 245 9.912634 TTATTCTTGAATGTGTTTCAGGATTTC 57.087 29.630 6.15 0.00 46.25 2.17
245 246 6.331369 TCTTGAATGTGTTTCAGGATTTCC 57.669 37.500 0.00 0.00 43.30 3.13
246 247 4.764679 TGAATGTGTTTCAGGATTTCCG 57.235 40.909 0.00 0.00 39.44 4.30
247 248 3.505680 TGAATGTGTTTCAGGATTTCCGG 59.494 43.478 0.00 0.00 39.44 5.14
248 249 1.243902 TGTGTTTCAGGATTTCCGGC 58.756 50.000 0.00 0.00 42.08 6.13
249 250 0.168128 GTGTTTCAGGATTTCCGGCG 59.832 55.000 0.00 0.00 42.08 6.46
250 251 0.035598 TGTTTCAGGATTTCCGGCGA 59.964 50.000 9.30 0.00 42.08 5.54
251 252 1.339631 TGTTTCAGGATTTCCGGCGAT 60.340 47.619 9.30 0.00 42.08 4.58
252 253 1.064060 GTTTCAGGATTTCCGGCGATG 59.936 52.381 9.30 0.00 42.08 3.84
253 254 1.095228 TTCAGGATTTCCGGCGATGC 61.095 55.000 9.30 0.00 42.08 3.91
254 255 2.588877 AGGATTTCCGGCGATGCG 60.589 61.111 9.30 0.00 42.08 4.73
265 266 2.711311 CGATGCGCATTCAGTGGG 59.289 61.111 26.12 4.47 43.21 4.61
266 267 1.815003 CGATGCGCATTCAGTGGGA 60.815 57.895 26.12 0.00 43.02 4.37
267 268 1.769098 CGATGCGCATTCAGTGGGAG 61.769 60.000 26.12 4.12 43.02 4.30
268 269 1.442526 GATGCGCATTCAGTGGGAGG 61.443 60.000 26.12 0.00 43.02 4.30
269 270 1.913951 ATGCGCATTCAGTGGGAGGA 61.914 55.000 19.28 0.00 43.02 3.71
270 271 1.817099 GCGCATTCAGTGGGAGGAG 60.817 63.158 0.30 0.00 43.02 3.69
271 272 1.900351 CGCATTCAGTGGGAGGAGA 59.100 57.895 0.00 0.00 43.02 3.71
272 273 0.460987 CGCATTCAGTGGGAGGAGAC 60.461 60.000 0.00 0.00 43.02 3.36
273 274 0.460987 GCATTCAGTGGGAGGAGACG 60.461 60.000 0.00 0.00 0.00 4.18
274 275 0.898320 CATTCAGTGGGAGGAGACGT 59.102 55.000 0.00 0.00 0.00 4.34
275 276 1.276421 CATTCAGTGGGAGGAGACGTT 59.724 52.381 0.00 0.00 0.00 3.99
276 277 0.966920 TTCAGTGGGAGGAGACGTTC 59.033 55.000 0.00 0.00 0.00 3.95
299 300 1.654105 GTTGACAACGAGATGCCTACG 59.346 52.381 1.86 0.00 0.00 3.51
300 301 0.172578 TGACAACGAGATGCCTACGG 59.827 55.000 0.00 0.00 0.00 4.02
301 302 0.172803 GACAACGAGATGCCTACGGT 59.827 55.000 0.00 0.00 0.00 4.83
302 303 2.665777 CAACGAGATGCCTACGGTG 58.334 57.895 0.00 0.00 38.31 4.94
303 304 0.172578 CAACGAGATGCCTACGGTGA 59.827 55.000 0.00 0.00 45.69 4.02
304 305 0.172803 AACGAGATGCCTACGGTGAC 59.827 55.000 0.00 0.00 0.00 3.67
305 306 0.680280 ACGAGATGCCTACGGTGACT 60.680 55.000 0.00 0.00 0.00 3.41
306 307 0.456221 CGAGATGCCTACGGTGACTT 59.544 55.000 0.00 0.00 0.00 3.01
307 308 1.534175 CGAGATGCCTACGGTGACTTC 60.534 57.143 0.00 0.00 0.00 3.01
308 309 0.456221 AGATGCCTACGGTGACTTCG 59.544 55.000 0.00 0.00 0.00 3.79
309 310 0.172803 GATGCCTACGGTGACTTCGT 59.827 55.000 0.00 0.00 43.64 3.85
310 311 1.402968 GATGCCTACGGTGACTTCGTA 59.597 52.381 0.00 0.00 41.38 3.43
311 312 1.246649 TGCCTACGGTGACTTCGTAA 58.753 50.000 0.00 0.00 41.62 3.18
312 313 1.612950 TGCCTACGGTGACTTCGTAAA 59.387 47.619 0.00 0.00 41.62 2.01
313 314 2.231964 TGCCTACGGTGACTTCGTAAAT 59.768 45.455 0.00 0.00 41.62 1.40
314 315 3.256558 GCCTACGGTGACTTCGTAAATT 58.743 45.455 0.00 0.00 41.62 1.82
315 316 3.681417 GCCTACGGTGACTTCGTAAATTT 59.319 43.478 0.00 0.00 41.62 1.82
316 317 4.201656 GCCTACGGTGACTTCGTAAATTTC 60.202 45.833 0.00 0.00 41.62 2.17
317 318 4.925054 CCTACGGTGACTTCGTAAATTTCA 59.075 41.667 0.00 0.00 41.62 2.69
318 319 5.406175 CCTACGGTGACTTCGTAAATTTCAA 59.594 40.000 0.00 0.00 41.62 2.69
319 320 5.338614 ACGGTGACTTCGTAAATTTCAAG 57.661 39.130 0.00 0.00 39.22 3.02
320 321 5.051816 ACGGTGACTTCGTAAATTTCAAGA 58.948 37.500 0.00 0.00 39.22 3.02
321 322 5.699458 ACGGTGACTTCGTAAATTTCAAGAT 59.301 36.000 0.00 0.00 39.22 2.40
322 323 6.015504 CGGTGACTTCGTAAATTTCAAGATG 58.984 40.000 0.00 0.00 0.00 2.90
323 324 6.128661 CGGTGACTTCGTAAATTTCAAGATGA 60.129 38.462 0.00 0.00 0.00 2.92
324 325 7.413000 CGGTGACTTCGTAAATTTCAAGATGAT 60.413 37.037 0.00 0.00 0.00 2.45
325 326 8.879759 GGTGACTTCGTAAATTTCAAGATGATA 58.120 33.333 0.00 0.00 0.00 2.15
330 331 9.573102 CTTCGTAAATTTCAAGATGATATGTCG 57.427 33.333 0.00 0.00 0.00 4.35
331 332 8.072238 TCGTAAATTTCAAGATGATATGTCGG 57.928 34.615 0.00 0.00 0.00 4.79
332 333 6.792250 CGTAAATTTCAAGATGATATGTCGGC 59.208 38.462 0.00 0.00 0.00 5.54
333 334 6.949352 AAATTTCAAGATGATATGTCGGCT 57.051 33.333 0.00 0.00 0.00 5.52
334 335 6.551385 AATTTCAAGATGATATGTCGGCTC 57.449 37.500 0.00 0.00 0.00 4.70
335 336 4.670896 TTCAAGATGATATGTCGGCTCA 57.329 40.909 0.00 0.00 0.00 4.26
336 337 4.248691 TCAAGATGATATGTCGGCTCAG 57.751 45.455 0.00 0.00 0.00 3.35
337 338 3.638627 TCAAGATGATATGTCGGCTCAGT 59.361 43.478 0.00 0.00 0.00 3.41
338 339 3.932545 AGATGATATGTCGGCTCAGTC 57.067 47.619 0.00 0.00 0.00 3.51
339 340 3.495331 AGATGATATGTCGGCTCAGTCT 58.505 45.455 0.00 0.00 0.00 3.24
340 341 3.894427 AGATGATATGTCGGCTCAGTCTT 59.106 43.478 0.00 0.00 0.00 3.01
341 342 4.343526 AGATGATATGTCGGCTCAGTCTTT 59.656 41.667 0.00 0.00 0.00 2.52
342 343 4.046938 TGATATGTCGGCTCAGTCTTTC 57.953 45.455 0.00 0.00 0.00 2.62
343 344 2.561733 TATGTCGGCTCAGTCTTTCG 57.438 50.000 0.00 0.00 0.00 3.46
344 345 0.108615 ATGTCGGCTCAGTCTTTCGG 60.109 55.000 0.00 0.00 0.00 4.30
345 346 1.176619 TGTCGGCTCAGTCTTTCGGA 61.177 55.000 0.00 0.00 0.00 4.55
346 347 0.456995 GTCGGCTCAGTCTTTCGGAG 60.457 60.000 0.00 0.00 40.44 4.63
347 348 1.153745 CGGCTCAGTCTTTCGGAGG 60.154 63.158 0.00 0.00 38.48 4.30
348 349 1.878656 CGGCTCAGTCTTTCGGAGGT 61.879 60.000 0.00 0.00 38.48 3.85
349 350 1.183549 GGCTCAGTCTTTCGGAGGTA 58.816 55.000 0.00 0.00 38.48 3.08
350 351 1.135053 GGCTCAGTCTTTCGGAGGTAC 60.135 57.143 0.00 0.00 38.48 3.34
352 353 2.231721 GCTCAGTCTTTCGGAGGTACTT 59.768 50.000 0.00 0.00 41.55 2.24
353 354 3.442977 GCTCAGTCTTTCGGAGGTACTTA 59.557 47.826 0.00 0.00 41.55 2.24
354 355 4.098196 GCTCAGTCTTTCGGAGGTACTTAT 59.902 45.833 0.00 0.00 41.55 1.73
355 356 5.298777 GCTCAGTCTTTCGGAGGTACTTATA 59.701 44.000 0.00 0.00 41.55 0.98
356 357 6.513720 GCTCAGTCTTTCGGAGGTACTTATAG 60.514 46.154 0.00 0.00 41.55 1.31
357 358 5.826737 TCAGTCTTTCGGAGGTACTTATAGG 59.173 44.000 0.00 0.00 41.55 2.57
358 359 5.009811 CAGTCTTTCGGAGGTACTTATAGGG 59.990 48.000 0.00 0.00 41.55 3.53
359 360 4.280425 GTCTTTCGGAGGTACTTATAGGGG 59.720 50.000 0.00 0.00 41.55 4.79
360 361 3.979501 TTCGGAGGTACTTATAGGGGT 57.020 47.619 0.00 0.00 41.55 4.95
361 362 5.134339 TCTTTCGGAGGTACTTATAGGGGTA 59.866 44.000 0.00 0.00 41.55 3.69
362 363 4.647564 TCGGAGGTACTTATAGGGGTAG 57.352 50.000 0.00 0.00 41.55 3.18
363 364 3.331889 TCGGAGGTACTTATAGGGGTAGG 59.668 52.174 0.00 0.00 41.55 3.18
364 365 3.075134 CGGAGGTACTTATAGGGGTAGGT 59.925 52.174 0.00 0.00 41.55 3.08
365 366 4.414677 GGAGGTACTTATAGGGGTAGGTG 58.585 52.174 0.00 0.00 41.55 4.00
366 367 4.140829 GGAGGTACTTATAGGGGTAGGTGT 60.141 50.000 0.00 0.00 41.55 4.16
367 368 4.812653 AGGTACTTATAGGGGTAGGTGTG 58.187 47.826 0.00 0.00 27.25 3.82
368 369 3.323115 GGTACTTATAGGGGTAGGTGTGC 59.677 52.174 0.00 0.00 0.00 4.57
369 370 2.037144 ACTTATAGGGGTAGGTGTGCG 58.963 52.381 0.00 0.00 0.00 5.34
370 371 2.037144 CTTATAGGGGTAGGTGTGCGT 58.963 52.381 0.00 0.00 0.00 5.24
371 372 1.405872 TATAGGGGTAGGTGTGCGTG 58.594 55.000 0.00 0.00 0.00 5.34
372 373 0.616679 ATAGGGGTAGGTGTGCGTGT 60.617 55.000 0.00 0.00 0.00 4.49
373 374 1.537814 TAGGGGTAGGTGTGCGTGTG 61.538 60.000 0.00 0.00 0.00 3.82
374 375 2.424302 GGGTAGGTGTGCGTGTGT 59.576 61.111 0.00 0.00 0.00 3.72
375 376 1.959226 GGGTAGGTGTGCGTGTGTG 60.959 63.158 0.00 0.00 0.00 3.82
376 377 2.604174 GGTAGGTGTGCGTGTGTGC 61.604 63.158 0.00 0.00 0.00 4.57
377 378 2.660224 TAGGTGTGCGTGTGTGCG 60.660 61.111 0.00 0.00 37.81 5.34
378 379 3.433540 TAGGTGTGCGTGTGTGCGT 62.434 57.895 0.00 0.00 37.81 5.24
379 380 2.909614 TAGGTGTGCGTGTGTGCGTT 62.910 55.000 0.00 0.00 37.81 4.84
380 381 2.350760 GTGTGCGTGTGTGCGTTC 60.351 61.111 0.00 0.00 37.81 3.95
381 382 2.815647 TGTGCGTGTGTGCGTTCA 60.816 55.556 0.00 0.00 37.81 3.18
382 383 2.176926 TGTGCGTGTGTGCGTTCAT 61.177 52.632 0.00 0.00 37.81 2.57
383 384 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
384 385 0.179250 GTGCGTGTGTGCGTTCATAG 60.179 55.000 0.00 0.00 37.81 2.23
385 386 1.288419 TGCGTGTGTGCGTTCATAGG 61.288 55.000 0.00 0.00 37.81 2.57
386 387 1.966493 GCGTGTGTGCGTTCATAGGG 61.966 60.000 0.00 0.00 0.00 3.53
387 388 1.358725 CGTGTGTGCGTTCATAGGGG 61.359 60.000 0.00 0.00 0.00 4.79
388 389 0.321298 GTGTGTGCGTTCATAGGGGT 60.321 55.000 0.00 0.00 0.00 4.95
389 390 0.321210 TGTGTGCGTTCATAGGGGTG 60.321 55.000 0.00 0.00 0.00 4.61
390 391 0.036765 GTGTGCGTTCATAGGGGTGA 60.037 55.000 0.00 0.00 0.00 4.02
391 392 0.249120 TGTGCGTTCATAGGGGTGAG 59.751 55.000 0.00 0.00 0.00 3.51
392 393 0.249398 GTGCGTTCATAGGGGTGAGT 59.751 55.000 0.00 0.00 0.00 3.41
393 394 0.249120 TGCGTTCATAGGGGTGAGTG 59.751 55.000 0.00 0.00 0.00 3.51
394 395 0.249398 GCGTTCATAGGGGTGAGTGT 59.751 55.000 0.00 0.00 0.00 3.55
395 396 1.479323 GCGTTCATAGGGGTGAGTGTA 59.521 52.381 0.00 0.00 0.00 2.90
396 397 2.102588 GCGTTCATAGGGGTGAGTGTAT 59.897 50.000 0.00 0.00 0.00 2.29
397 398 3.717707 CGTTCATAGGGGTGAGTGTATG 58.282 50.000 0.00 0.00 0.00 2.39
398 399 3.467803 GTTCATAGGGGTGAGTGTATGC 58.532 50.000 0.00 0.00 0.00 3.14
399 400 1.686587 TCATAGGGGTGAGTGTATGCG 59.313 52.381 0.00 0.00 0.00 4.73
400 401 0.393077 ATAGGGGTGAGTGTATGCGC 59.607 55.000 0.00 0.00 0.00 6.09
401 402 2.011741 TAGGGGTGAGTGTATGCGCG 62.012 60.000 0.00 0.00 0.00 6.86
402 403 2.125673 GGGTGAGTGTATGCGCGT 60.126 61.111 8.43 7.55 0.00 6.01
403 404 2.452813 GGGTGAGTGTATGCGCGTG 61.453 63.158 13.61 0.00 0.00 5.34
404 405 1.736645 GGTGAGTGTATGCGCGTGT 60.737 57.895 13.61 0.00 0.00 4.49
405 406 0.457166 GGTGAGTGTATGCGCGTGTA 60.457 55.000 13.61 0.00 0.00 2.90
406 407 1.556564 GTGAGTGTATGCGCGTGTAT 58.443 50.000 13.61 4.63 0.00 2.29
407 408 2.542205 GGTGAGTGTATGCGCGTGTATA 60.542 50.000 13.61 2.40 0.00 1.47
408 409 3.305964 GTGAGTGTATGCGCGTGTATAT 58.694 45.455 13.61 0.00 0.00 0.86
409 410 3.734231 GTGAGTGTATGCGCGTGTATATT 59.266 43.478 13.61 0.00 0.00 1.28
410 411 4.913345 GTGAGTGTATGCGCGTGTATATTA 59.087 41.667 13.61 0.62 0.00 0.98
411 412 5.059343 GTGAGTGTATGCGCGTGTATATTAG 59.941 44.000 13.61 0.00 0.00 1.73
412 413 3.918591 AGTGTATGCGCGTGTATATTAGC 59.081 43.478 13.61 0.00 0.00 3.09
417 418 2.471072 CGCGTGTATATTAGCGCTTG 57.529 50.000 18.68 0.00 46.56 4.01
418 419 1.460267 CGCGTGTATATTAGCGCTTGC 60.460 52.381 18.68 0.43 46.56 4.01
419 420 1.460267 GCGTGTATATTAGCGCTTGCG 60.460 52.381 18.68 10.90 45.48 4.85
420 421 1.784856 CGTGTATATTAGCGCTTGCGT 59.215 47.619 18.68 2.36 45.69 5.24
421 422 2.160143 CGTGTATATTAGCGCTTGCGTC 60.160 50.000 18.68 8.80 45.69 5.19
422 423 2.155155 GTGTATATTAGCGCTTGCGTCC 59.845 50.000 18.68 0.45 45.69 4.79
423 424 1.385743 GTATATTAGCGCTTGCGTCCG 59.614 52.381 18.68 0.00 45.69 4.79
424 425 0.249322 ATATTAGCGCTTGCGTCCGT 60.249 50.000 18.68 0.00 45.69 4.69
425 426 0.381445 TATTAGCGCTTGCGTCCGTA 59.619 50.000 18.68 0.00 45.69 4.02
426 427 0.249322 ATTAGCGCTTGCGTCCGTAT 60.249 50.000 18.68 0.00 45.69 3.06
427 428 0.458889 TTAGCGCTTGCGTCCGTATT 60.459 50.000 18.68 0.00 45.69 1.89
428 429 0.381445 TAGCGCTTGCGTCCGTATTA 59.619 50.000 18.68 0.00 45.69 0.98
429 430 1.143969 AGCGCTTGCGTCCGTATTAC 61.144 55.000 16.38 0.00 45.69 1.89
430 431 1.551779 CGCTTGCGTCCGTATTACG 59.448 57.895 9.26 9.26 43.12 3.18
431 432 1.135699 CGCTTGCGTCCGTATTACGT 61.136 55.000 14.62 0.00 40.58 3.57
432 433 0.994263 GCTTGCGTCCGTATTACGTT 59.006 50.000 14.62 0.00 40.58 3.99
433 434 2.184448 GCTTGCGTCCGTATTACGTTA 58.816 47.619 14.62 0.44 40.58 3.18
434 435 2.598192 GCTTGCGTCCGTATTACGTTAA 59.402 45.455 14.62 0.00 40.58 2.01
435 436 3.060628 GCTTGCGTCCGTATTACGTTAAA 59.939 43.478 14.62 2.29 40.58 1.52
436 437 4.434067 GCTTGCGTCCGTATTACGTTAAAA 60.434 41.667 14.62 2.89 40.58 1.52
437 438 5.582439 TTGCGTCCGTATTACGTTAAAAA 57.418 34.783 14.62 2.02 40.58 1.94
519 520 0.817634 TGTCAAACTTCCACCTGCCG 60.818 55.000 0.00 0.00 0.00 5.69
525 526 1.221840 CTTCCACCTGCCGCACTAT 59.778 57.895 0.00 0.00 0.00 2.12
532 533 3.880490 CCACCTGCCGCACTATAAAATTA 59.120 43.478 0.00 0.00 0.00 1.40
533 534 4.518970 CCACCTGCCGCACTATAAAATTAT 59.481 41.667 0.00 0.00 0.00 1.28
535 536 6.142817 CACCTGCCGCACTATAAAATTATTC 58.857 40.000 0.00 0.00 0.00 1.75
541 542 6.913673 GCCGCACTATAAAATTATTCGGAAAA 59.086 34.615 14.30 0.00 36.77 2.29
623 634 2.125512 AATGACGAGCGGCAGACC 60.126 61.111 4.24 0.00 36.12 3.85
702 713 2.107031 CCATCTCCATCTACATTGCCCA 59.893 50.000 0.00 0.00 0.00 5.36
722 733 0.971386 TACGGACCAAACTCCACCTC 59.029 55.000 0.00 0.00 0.00 3.85
733 750 5.069781 CCAAACTCCACCTCCATTAAACAAA 59.930 40.000 0.00 0.00 0.00 2.83
734 751 6.407525 CCAAACTCCACCTCCATTAAACAAAA 60.408 38.462 0.00 0.00 0.00 2.44
735 752 5.784578 ACTCCACCTCCATTAAACAAAAC 57.215 39.130 0.00 0.00 0.00 2.43
883 911 1.980765 TGCTCTCACTCCCTTTGATGT 59.019 47.619 0.00 0.00 0.00 3.06
902 930 0.771127 TCTTCTTCCCCCACCACAAG 59.229 55.000 0.00 0.00 0.00 3.16
1335 1396 4.872485 GTCTCCGCGCTCGACTCG 62.872 72.222 5.56 0.00 38.10 4.18
1638 1699 2.362503 ACACCCCTCGAGATCGCA 60.363 61.111 15.71 0.00 39.60 5.10
1774 1835 3.328288 CTTCTTGGAAAGCCCGCGC 62.328 63.158 0.00 0.00 45.70 6.86
1800 1861 4.465446 CCCGGCTCCTCCTCCTCA 62.465 72.222 0.00 0.00 0.00 3.86
1824 1888 0.389948 CCTTCTCCGGTTCCTTCACG 60.390 60.000 0.00 0.00 0.00 4.35
2562 6138 3.785859 GGGAGCATGGACAGGCGA 61.786 66.667 3.14 0.00 43.74 5.54
2580 6156 4.089757 CGGAGGGGGAGGAAGGGA 62.090 72.222 0.00 0.00 0.00 4.20
2586 6162 1.925972 GGGGAGGAAGGGAAGCAGT 60.926 63.158 0.00 0.00 0.00 4.40
2830 6433 3.963665 TGTTCAAAGGTTTCATTGCTCG 58.036 40.909 0.00 0.00 0.00 5.03
2854 6457 5.051039 GCATGTTGCAATAAGATGATGCTTG 60.051 40.000 0.59 0.00 44.26 4.01
2869 6472 8.531982 AGATGATGCTTGTCTTTAGTTGTACTA 58.468 33.333 0.00 0.00 0.00 1.82
2915 6519 6.646653 GGTTTCTCTTTGGATCATGTTTTTCC 59.353 38.462 0.00 0.00 0.00 3.13
3039 6884 6.183360 ACCTCAAGATCGATTTAGGTACTCAC 60.183 42.308 15.95 0.00 41.75 3.51
3235 7081 7.573710 TGGTGTGATAGCATTCTTACCTAATT 58.426 34.615 0.00 0.00 0.00 1.40
3522 7372 7.020827 AGGATTTCCTCTTGAGTTGTCATAA 57.979 36.000 0.00 0.00 44.77 1.90
3533 7383 8.097038 TCTTGAGTTGTCATAAAGCTAGATGTT 58.903 33.333 0.00 0.00 30.85 2.71
3610 7860 1.887242 TGCAGAAGACGTGGTGTGC 60.887 57.895 9.55 9.55 0.00 4.57
3648 7898 5.480205 AGAGTAGTTTCTTTTTAGCCGAGG 58.520 41.667 0.00 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 6.975196 AAAATAATTTGGCCAAGGCTTTTT 57.025 29.167 19.48 18.60 41.60 1.94
10 11 6.975196 AAAAATAATTTGGCCAAGGCTTTT 57.025 29.167 19.48 18.15 41.60 2.27
11 12 6.148645 CGTAAAAATAATTTGGCCAAGGCTTT 59.851 34.615 19.48 13.68 41.60 3.51
12 13 5.641636 CGTAAAAATAATTTGGCCAAGGCTT 59.358 36.000 19.48 15.41 41.60 4.35
13 14 5.175127 CGTAAAAATAATTTGGCCAAGGCT 58.825 37.500 19.48 9.63 41.60 4.58
14 15 4.201773 GCGTAAAAATAATTTGGCCAAGGC 60.202 41.667 19.48 6.97 41.06 4.35
15 16 4.032331 CGCGTAAAAATAATTTGGCCAAGG 59.968 41.667 19.48 0.00 0.00 3.61
16 17 4.859798 TCGCGTAAAAATAATTTGGCCAAG 59.140 37.500 19.48 3.33 0.00 3.61
17 18 4.621886 GTCGCGTAAAAATAATTTGGCCAA 59.378 37.500 16.05 16.05 0.00 4.52
18 19 4.082679 AGTCGCGTAAAAATAATTTGGCCA 60.083 37.500 0.00 0.00 0.00 5.36
19 20 4.417506 AGTCGCGTAAAAATAATTTGGCC 58.582 39.130 5.77 0.00 0.00 5.36
20 21 5.343860 ACAAGTCGCGTAAAAATAATTTGGC 59.656 36.000 5.77 0.00 0.00 4.52
21 22 6.033091 GGACAAGTCGCGTAAAAATAATTTGG 59.967 38.462 5.77 0.00 0.00 3.28
22 23 6.033091 GGGACAAGTCGCGTAAAAATAATTTG 59.967 38.462 5.77 0.00 32.91 2.32
23 24 6.072342 AGGGACAAGTCGCGTAAAAATAATTT 60.072 34.615 5.77 0.00 45.79 1.82
24 25 5.413523 AGGGACAAGTCGCGTAAAAATAATT 59.586 36.000 5.77 0.00 45.79 1.40
25 26 4.939439 AGGGACAAGTCGCGTAAAAATAAT 59.061 37.500 5.77 0.00 45.79 1.28
26 27 4.317488 AGGGACAAGTCGCGTAAAAATAA 58.683 39.130 5.77 0.00 45.79 1.40
27 28 3.929094 AGGGACAAGTCGCGTAAAAATA 58.071 40.909 5.77 0.00 45.79 1.40
28 29 2.774687 AGGGACAAGTCGCGTAAAAAT 58.225 42.857 5.77 0.00 45.79 1.82
29 30 2.243602 AGGGACAAGTCGCGTAAAAA 57.756 45.000 5.77 0.00 45.79 1.94
30 31 2.297033 ACTAGGGACAAGTCGCGTAAAA 59.703 45.455 5.77 0.00 45.79 1.52
31 32 1.888512 ACTAGGGACAAGTCGCGTAAA 59.111 47.619 5.77 0.00 45.79 2.01
32 33 1.470098 GACTAGGGACAAGTCGCGTAA 59.530 52.381 5.77 1.88 45.79 3.18
33 34 1.089920 GACTAGGGACAAGTCGCGTA 58.910 55.000 5.77 4.61 45.79 4.42
34 35 1.881602 GACTAGGGACAAGTCGCGT 59.118 57.895 5.77 4.88 45.79 6.01
35 36 4.787999 GACTAGGGACAAGTCGCG 57.212 61.111 0.00 0.00 45.79 5.87
38 39 0.816373 GGACCGACTAGGGACAAGTC 59.184 60.000 0.00 0.00 46.96 3.01
39 40 0.614134 GGGACCGACTAGGGACAAGT 60.614 60.000 0.00 0.00 46.96 3.16
40 41 0.613853 TGGGACCGACTAGGGACAAG 60.614 60.000 0.00 0.00 46.96 3.16
41 42 0.178926 TTGGGACCGACTAGGGACAA 60.179 55.000 0.00 0.00 46.96 3.18
42 43 0.042131 ATTGGGACCGACTAGGGACA 59.958 55.000 0.00 0.00 46.96 4.02
43 44 0.464452 CATTGGGACCGACTAGGGAC 59.536 60.000 0.00 0.00 46.96 4.46
44 45 0.689745 CCATTGGGACCGACTAGGGA 60.690 60.000 0.00 0.00 46.96 4.20
45 46 0.981277 ACCATTGGGACCGACTAGGG 60.981 60.000 7.78 0.00 40.53 3.53
46 47 0.909623 AACCATTGGGACCGACTAGG 59.090 55.000 7.78 0.00 41.52 3.02
47 48 2.781681 AAACCATTGGGACCGACTAG 57.218 50.000 7.78 0.00 38.05 2.57
48 49 3.175594 AGTAAACCATTGGGACCGACTA 58.824 45.455 7.78 0.00 38.05 2.59
49 50 1.982958 AGTAAACCATTGGGACCGACT 59.017 47.619 7.78 0.34 38.05 4.18
50 51 2.484742 AGTAAACCATTGGGACCGAC 57.515 50.000 7.78 0.00 38.05 4.79
51 52 2.785562 CAAGTAAACCATTGGGACCGA 58.214 47.619 7.78 0.00 38.05 4.69
52 53 1.201414 GCAAGTAAACCATTGGGACCG 59.799 52.381 7.78 0.00 38.05 4.79
53 54 1.548719 GGCAAGTAAACCATTGGGACC 59.451 52.381 7.78 0.00 38.05 4.46
54 55 2.525368 AGGCAAGTAAACCATTGGGAC 58.475 47.619 7.78 2.24 38.05 4.46
55 56 2.990740 AGGCAAGTAAACCATTGGGA 57.009 45.000 7.78 0.00 38.05 4.37
56 57 4.350368 AAAAGGCAAGTAAACCATTGGG 57.650 40.909 7.78 0.00 41.29 4.12
92 93 7.151976 GTCCATTTTGTGCCAACTATTTAGTT 58.848 34.615 0.00 0.00 46.76 2.24
93 94 6.569610 CGTCCATTTTGTGCCAACTATTTAGT 60.570 38.462 0.00 0.00 38.39 2.24
94 95 5.799936 CGTCCATTTTGTGCCAACTATTTAG 59.200 40.000 0.00 0.00 0.00 1.85
95 96 5.473846 TCGTCCATTTTGTGCCAACTATTTA 59.526 36.000 0.00 0.00 0.00 1.40
96 97 4.279671 TCGTCCATTTTGTGCCAACTATTT 59.720 37.500 0.00 0.00 0.00 1.40
97 98 3.823873 TCGTCCATTTTGTGCCAACTATT 59.176 39.130 0.00 0.00 0.00 1.73
98 99 3.190535 GTCGTCCATTTTGTGCCAACTAT 59.809 43.478 0.00 0.00 0.00 2.12
99 100 2.550606 GTCGTCCATTTTGTGCCAACTA 59.449 45.455 0.00 0.00 0.00 2.24
100 101 1.336755 GTCGTCCATTTTGTGCCAACT 59.663 47.619 0.00 0.00 0.00 3.16
101 102 1.601914 GGTCGTCCATTTTGTGCCAAC 60.602 52.381 0.00 0.00 0.00 3.77
102 103 0.671251 GGTCGTCCATTTTGTGCCAA 59.329 50.000 0.00 0.00 0.00 4.52
103 104 1.175983 GGGTCGTCCATTTTGTGCCA 61.176 55.000 0.04 0.00 35.00 4.92
104 105 1.175983 TGGGTCGTCCATTTTGTGCC 61.176 55.000 0.04 0.00 41.46 5.01
105 106 0.671251 TTGGGTCGTCCATTTTGTGC 59.329 50.000 0.04 0.00 46.52 4.57
106 107 3.658757 ATTTGGGTCGTCCATTTTGTG 57.341 42.857 0.04 0.00 46.52 3.33
107 108 5.105513 GGAATATTTGGGTCGTCCATTTTGT 60.106 40.000 0.04 0.00 46.52 2.83
108 109 5.105554 TGGAATATTTGGGTCGTCCATTTTG 60.106 40.000 0.04 0.00 46.52 2.44
109 110 5.020132 TGGAATATTTGGGTCGTCCATTTT 58.980 37.500 0.04 0.00 46.52 1.82
110 111 4.605183 TGGAATATTTGGGTCGTCCATTT 58.395 39.130 0.04 0.00 46.52 2.32
111 112 4.243793 TGGAATATTTGGGTCGTCCATT 57.756 40.909 0.04 0.00 46.52 3.16
112 113 3.943671 TGGAATATTTGGGTCGTCCAT 57.056 42.857 0.04 0.00 46.52 3.41
113 114 3.722908 TTGGAATATTTGGGTCGTCCA 57.277 42.857 0.04 0.00 45.43 4.02
114 115 4.401202 ACATTTGGAATATTTGGGTCGTCC 59.599 41.667 0.00 0.00 0.00 4.79
115 116 5.339990 CACATTTGGAATATTTGGGTCGTC 58.660 41.667 0.00 0.00 0.00 4.20
116 117 5.323371 CACATTTGGAATATTTGGGTCGT 57.677 39.130 0.00 0.00 0.00 4.34
138 139 0.240945 CAATCACAGGTTGGTTCGCC 59.759 55.000 0.00 0.00 37.92 5.54
139 140 0.240945 CCAATCACAGGTTGGTTCGC 59.759 55.000 0.85 0.00 40.94 4.70
140 141 1.890876 TCCAATCACAGGTTGGTTCG 58.109 50.000 8.75 0.00 45.05 3.95
141 142 2.493278 CCATCCAATCACAGGTTGGTTC 59.507 50.000 8.75 0.00 45.05 3.62
142 143 2.528564 CCATCCAATCACAGGTTGGTT 58.471 47.619 8.75 0.00 45.05 3.67
143 144 2.220653 CCATCCAATCACAGGTTGGT 57.779 50.000 8.75 0.00 45.05 3.67
144 145 2.220653 ACCATCCAATCACAGGTTGG 57.779 50.000 2.61 2.61 46.76 3.77
145 146 4.588899 TCTAACCATCCAATCACAGGTTG 58.411 43.478 0.00 0.00 42.19 3.77
146 147 4.324563 CCTCTAACCATCCAATCACAGGTT 60.325 45.833 0.00 0.00 44.23 3.50
147 148 3.200825 CCTCTAACCATCCAATCACAGGT 59.799 47.826 0.00 0.00 0.00 4.00
148 149 3.434167 CCCTCTAACCATCCAATCACAGG 60.434 52.174 0.00 0.00 0.00 4.00
149 150 3.455910 TCCCTCTAACCATCCAATCACAG 59.544 47.826 0.00 0.00 0.00 3.66
150 151 3.199946 GTCCCTCTAACCATCCAATCACA 59.800 47.826 0.00 0.00 0.00 3.58
151 152 3.456277 AGTCCCTCTAACCATCCAATCAC 59.544 47.826 0.00 0.00 0.00 3.06
152 153 3.455910 CAGTCCCTCTAACCATCCAATCA 59.544 47.826 0.00 0.00 0.00 2.57
153 154 3.456277 ACAGTCCCTCTAACCATCCAATC 59.544 47.826 0.00 0.00 0.00 2.67
154 155 3.200825 CACAGTCCCTCTAACCATCCAAT 59.799 47.826 0.00 0.00 0.00 3.16
155 156 2.571653 CACAGTCCCTCTAACCATCCAA 59.428 50.000 0.00 0.00 0.00 3.53
156 157 2.187958 CACAGTCCCTCTAACCATCCA 58.812 52.381 0.00 0.00 0.00 3.41
157 158 1.486726 CCACAGTCCCTCTAACCATCC 59.513 57.143 0.00 0.00 0.00 3.51
158 159 2.188817 ACCACAGTCCCTCTAACCATC 58.811 52.381 0.00 0.00 0.00 3.51
159 160 2.344093 ACCACAGTCCCTCTAACCAT 57.656 50.000 0.00 0.00 0.00 3.55
160 161 3.371965 GATACCACAGTCCCTCTAACCA 58.628 50.000 0.00 0.00 0.00 3.67
161 162 2.699321 GGATACCACAGTCCCTCTAACC 59.301 54.545 0.00 0.00 0.00 2.85
177 178 0.698818 CCCTAATGGCCTGGGGATAC 59.301 60.000 7.63 0.00 41.25 2.24
178 179 0.273781 ACCCTAATGGCCTGGGGATA 59.726 55.000 19.19 0.00 44.97 2.59
179 180 0.630478 AACCCTAATGGCCTGGGGAT 60.630 55.000 19.19 5.43 44.97 3.85
180 181 1.230482 AACCCTAATGGCCTGGGGA 60.230 57.895 19.19 0.00 44.97 4.81
181 182 1.230212 GAACCCTAATGGCCTGGGG 59.770 63.158 21.58 17.37 44.97 4.96
182 183 0.334676 TTGAACCCTAATGGCCTGGG 59.665 55.000 17.89 17.89 46.07 4.45
183 184 1.005924 ACTTGAACCCTAATGGCCTGG 59.994 52.381 3.32 0.59 37.83 4.45
184 185 2.369394 GACTTGAACCCTAATGGCCTG 58.631 52.381 3.32 0.00 37.83 4.85
185 186 1.285078 GGACTTGAACCCTAATGGCCT 59.715 52.381 3.32 0.00 37.83 5.19
186 187 1.285078 AGGACTTGAACCCTAATGGCC 59.715 52.381 0.00 0.00 37.83 5.36
187 188 2.369394 CAGGACTTGAACCCTAATGGC 58.631 52.381 0.00 0.00 37.83 4.40
188 189 2.308866 ACCAGGACTTGAACCCTAATGG 59.691 50.000 0.00 0.00 41.37 3.16
189 190 3.347216 CACCAGGACTTGAACCCTAATG 58.653 50.000 0.00 0.00 0.00 1.90
190 191 2.290960 GCACCAGGACTTGAACCCTAAT 60.291 50.000 0.00 0.00 0.00 1.73
191 192 1.073284 GCACCAGGACTTGAACCCTAA 59.927 52.381 0.00 0.00 0.00 2.69
192 193 0.690762 GCACCAGGACTTGAACCCTA 59.309 55.000 0.00 0.00 0.00 3.53
193 194 1.062488 AGCACCAGGACTTGAACCCT 61.062 55.000 0.00 0.00 0.00 4.34
194 195 0.606673 GAGCACCAGGACTTGAACCC 60.607 60.000 0.00 0.00 0.00 4.11
195 196 0.951040 CGAGCACCAGGACTTGAACC 60.951 60.000 0.00 0.00 0.00 3.62
196 197 1.569479 GCGAGCACCAGGACTTGAAC 61.569 60.000 0.00 0.00 0.00 3.18
197 198 1.301716 GCGAGCACCAGGACTTGAA 60.302 57.895 0.00 0.00 0.00 2.69
198 199 1.830587 ATGCGAGCACCAGGACTTGA 61.831 55.000 0.00 0.00 0.00 3.02
199 200 0.957395 AATGCGAGCACCAGGACTTG 60.957 55.000 0.00 0.00 0.00 3.16
200 201 0.250901 AAATGCGAGCACCAGGACTT 60.251 50.000 0.00 0.00 0.00 3.01
201 202 0.613260 TAAATGCGAGCACCAGGACT 59.387 50.000 0.00 0.00 0.00 3.85
202 203 1.668419 ATAAATGCGAGCACCAGGAC 58.332 50.000 0.00 0.00 0.00 3.85
203 204 2.092968 AGAATAAATGCGAGCACCAGGA 60.093 45.455 0.00 0.00 0.00 3.86
204 205 2.292267 AGAATAAATGCGAGCACCAGG 58.708 47.619 0.00 0.00 0.00 4.45
205 206 3.374988 TCAAGAATAAATGCGAGCACCAG 59.625 43.478 0.00 0.00 0.00 4.00
206 207 3.342719 TCAAGAATAAATGCGAGCACCA 58.657 40.909 0.00 0.00 0.00 4.17
207 208 4.355543 TTCAAGAATAAATGCGAGCACC 57.644 40.909 0.00 0.00 0.00 5.01
208 209 5.228635 CACATTCAAGAATAAATGCGAGCAC 59.771 40.000 0.00 0.00 36.54 4.40
209 210 5.106197 ACACATTCAAGAATAAATGCGAGCA 60.106 36.000 0.00 0.00 36.54 4.26
210 211 5.335127 ACACATTCAAGAATAAATGCGAGC 58.665 37.500 0.00 0.00 36.54 5.03
211 212 7.538334 TGAAACACATTCAAGAATAAATGCGAG 59.462 33.333 0.00 0.00 44.94 5.03
212 213 7.366513 TGAAACACATTCAAGAATAAATGCGA 58.633 30.769 0.00 0.00 44.94 5.10
213 214 7.565450 TGAAACACATTCAAGAATAAATGCG 57.435 32.000 0.00 0.00 44.94 4.73
225 226 3.505680 CCGGAAATCCTGAAACACATTCA 59.494 43.478 0.00 0.00 45.71 2.57
226 227 3.673323 GCCGGAAATCCTGAAACACATTC 60.673 47.826 5.05 0.00 38.60 2.67
227 228 2.231235 GCCGGAAATCCTGAAACACATT 59.769 45.455 5.05 0.00 0.00 2.71
228 229 1.818674 GCCGGAAATCCTGAAACACAT 59.181 47.619 5.05 0.00 0.00 3.21
229 230 1.243902 GCCGGAAATCCTGAAACACA 58.756 50.000 5.05 0.00 0.00 3.72
230 231 0.168128 CGCCGGAAATCCTGAAACAC 59.832 55.000 5.05 0.00 0.00 3.32
231 232 0.035598 TCGCCGGAAATCCTGAAACA 59.964 50.000 5.05 0.00 0.00 2.83
232 233 1.064060 CATCGCCGGAAATCCTGAAAC 59.936 52.381 5.05 0.00 0.00 2.78
233 234 1.378531 CATCGCCGGAAATCCTGAAA 58.621 50.000 5.05 0.00 0.00 2.69
234 235 1.095228 GCATCGCCGGAAATCCTGAA 61.095 55.000 5.05 0.00 0.00 3.02
235 236 1.523711 GCATCGCCGGAAATCCTGA 60.524 57.895 5.05 0.00 0.00 3.86
236 237 2.885676 CGCATCGCCGGAAATCCTG 61.886 63.158 5.05 0.00 0.00 3.86
237 238 2.588877 CGCATCGCCGGAAATCCT 60.589 61.111 5.05 0.00 0.00 3.24
248 249 1.769098 CTCCCACTGAATGCGCATCG 61.769 60.000 25.53 17.09 0.00 3.84
249 250 1.442526 CCTCCCACTGAATGCGCATC 61.443 60.000 25.53 17.12 0.00 3.91
250 251 1.452651 CCTCCCACTGAATGCGCAT 60.453 57.895 19.28 19.28 0.00 4.73
251 252 2.046023 CCTCCCACTGAATGCGCA 60.046 61.111 14.96 14.96 0.00 6.09
252 253 1.817099 CTCCTCCCACTGAATGCGC 60.817 63.158 0.00 0.00 0.00 6.09
253 254 0.460987 GTCTCCTCCCACTGAATGCG 60.461 60.000 0.00 0.00 0.00 4.73
254 255 0.460987 CGTCTCCTCCCACTGAATGC 60.461 60.000 0.00 0.00 0.00 3.56
255 256 0.898320 ACGTCTCCTCCCACTGAATG 59.102 55.000 0.00 0.00 0.00 2.67
256 257 1.550976 GAACGTCTCCTCCCACTGAAT 59.449 52.381 0.00 0.00 0.00 2.57
257 258 0.966920 GAACGTCTCCTCCCACTGAA 59.033 55.000 0.00 0.00 0.00 3.02
258 259 0.898789 GGAACGTCTCCTCCCACTGA 60.899 60.000 8.87 0.00 41.61 3.41
259 260 1.592223 GGAACGTCTCCTCCCACTG 59.408 63.158 8.87 0.00 41.61 3.66
260 261 4.115270 GGAACGTCTCCTCCCACT 57.885 61.111 8.87 0.00 41.61 4.00
279 280 1.654105 CGTAGGCATCTCGTTGTCAAC 59.346 52.381 5.58 5.58 0.00 3.18
280 281 1.403647 CCGTAGGCATCTCGTTGTCAA 60.404 52.381 0.00 0.00 46.14 3.18
281 282 0.172578 CCGTAGGCATCTCGTTGTCA 59.827 55.000 0.00 0.00 46.14 3.58
282 283 2.959275 CCGTAGGCATCTCGTTGTC 58.041 57.895 0.00 0.00 46.14 3.18
295 296 6.364165 TCTTGAAATTTACGAAGTCACCGTAG 59.636 38.462 0.00 0.00 43.93 3.51
296 297 6.215121 TCTTGAAATTTACGAAGTCACCGTA 58.785 36.000 0.00 0.00 43.93 4.02
297 298 5.051816 TCTTGAAATTTACGAAGTCACCGT 58.948 37.500 0.00 0.00 43.93 4.83
298 299 5.585500 TCTTGAAATTTACGAAGTCACCG 57.415 39.130 0.00 0.00 43.93 4.94
299 300 7.129109 TCATCTTGAAATTTACGAAGTCACC 57.871 36.000 0.00 0.00 43.93 4.02
304 305 9.573102 CGACATATCATCTTGAAATTTACGAAG 57.427 33.333 0.00 0.00 0.00 3.79
305 306 8.547894 CCGACATATCATCTTGAAATTTACGAA 58.452 33.333 0.00 0.00 0.00 3.85
306 307 7.307160 GCCGACATATCATCTTGAAATTTACGA 60.307 37.037 0.00 0.00 0.00 3.43
307 308 6.792250 GCCGACATATCATCTTGAAATTTACG 59.208 38.462 0.00 0.00 0.00 3.18
308 309 7.865707 AGCCGACATATCATCTTGAAATTTAC 58.134 34.615 0.00 0.00 0.00 2.01
309 310 7.714813 TGAGCCGACATATCATCTTGAAATTTA 59.285 33.333 0.00 0.00 0.00 1.40
310 311 6.543465 TGAGCCGACATATCATCTTGAAATTT 59.457 34.615 0.00 0.00 0.00 1.82
311 312 6.057533 TGAGCCGACATATCATCTTGAAATT 58.942 36.000 0.00 0.00 0.00 1.82
312 313 5.614308 TGAGCCGACATATCATCTTGAAAT 58.386 37.500 0.00 0.00 0.00 2.17
313 314 5.022282 TGAGCCGACATATCATCTTGAAA 57.978 39.130 0.00 0.00 0.00 2.69
314 315 4.100035 ACTGAGCCGACATATCATCTTGAA 59.900 41.667 0.00 0.00 0.00 2.69
315 316 3.638627 ACTGAGCCGACATATCATCTTGA 59.361 43.478 0.00 0.00 0.00 3.02
316 317 3.986572 GACTGAGCCGACATATCATCTTG 59.013 47.826 0.00 0.00 0.00 3.02
317 318 3.894427 AGACTGAGCCGACATATCATCTT 59.106 43.478 0.00 0.00 0.00 2.40
318 319 3.495331 AGACTGAGCCGACATATCATCT 58.505 45.455 0.00 0.00 0.00 2.90
319 320 3.932545 AGACTGAGCCGACATATCATC 57.067 47.619 0.00 0.00 0.00 2.92
320 321 4.626042 GAAAGACTGAGCCGACATATCAT 58.374 43.478 0.00 0.00 0.00 2.45
321 322 3.489229 CGAAAGACTGAGCCGACATATCA 60.489 47.826 0.00 0.00 0.00 2.15
322 323 3.046390 CGAAAGACTGAGCCGACATATC 58.954 50.000 0.00 0.00 0.00 1.63
323 324 2.223829 CCGAAAGACTGAGCCGACATAT 60.224 50.000 0.00 0.00 0.00 1.78
324 325 1.134367 CCGAAAGACTGAGCCGACATA 59.866 52.381 0.00 0.00 0.00 2.29
325 326 0.108615 CCGAAAGACTGAGCCGACAT 60.109 55.000 0.00 0.00 0.00 3.06
326 327 1.176619 TCCGAAAGACTGAGCCGACA 61.177 55.000 0.00 0.00 0.00 4.35
327 328 0.456995 CTCCGAAAGACTGAGCCGAC 60.457 60.000 0.00 0.00 0.00 4.79
328 329 1.595993 CCTCCGAAAGACTGAGCCGA 61.596 60.000 0.00 0.00 0.00 5.54
329 330 1.153745 CCTCCGAAAGACTGAGCCG 60.154 63.158 0.00 0.00 0.00 5.52
330 331 1.135053 GTACCTCCGAAAGACTGAGCC 60.135 57.143 0.00 0.00 0.00 4.70
331 332 1.819903 AGTACCTCCGAAAGACTGAGC 59.180 52.381 0.00 0.00 0.00 4.26
332 333 5.838531 ATAAGTACCTCCGAAAGACTGAG 57.161 43.478 0.00 0.00 0.00 3.35
333 334 5.826737 CCTATAAGTACCTCCGAAAGACTGA 59.173 44.000 0.00 0.00 0.00 3.41
334 335 5.009811 CCCTATAAGTACCTCCGAAAGACTG 59.990 48.000 0.00 0.00 0.00 3.51
335 336 5.139001 CCCTATAAGTACCTCCGAAAGACT 58.861 45.833 0.00 0.00 0.00 3.24
336 337 4.280425 CCCCTATAAGTACCTCCGAAAGAC 59.720 50.000 0.00 0.00 0.00 3.01
337 338 4.078980 ACCCCTATAAGTACCTCCGAAAGA 60.079 45.833 0.00 0.00 0.00 2.52
338 339 4.221530 ACCCCTATAAGTACCTCCGAAAG 58.778 47.826 0.00 0.00 0.00 2.62
339 340 4.270317 ACCCCTATAAGTACCTCCGAAA 57.730 45.455 0.00 0.00 0.00 3.46
340 341 3.979501 ACCCCTATAAGTACCTCCGAA 57.020 47.619 0.00 0.00 0.00 4.30
341 342 3.331889 CCTACCCCTATAAGTACCTCCGA 59.668 52.174 0.00 0.00 0.00 4.55
342 343 3.075134 ACCTACCCCTATAAGTACCTCCG 59.925 52.174 0.00 0.00 0.00 4.63
343 344 4.140829 ACACCTACCCCTATAAGTACCTCC 60.141 50.000 0.00 0.00 0.00 4.30
344 345 4.831710 CACACCTACCCCTATAAGTACCTC 59.168 50.000 0.00 0.00 0.00 3.85
345 346 4.812653 CACACCTACCCCTATAAGTACCT 58.187 47.826 0.00 0.00 0.00 3.08
346 347 3.323115 GCACACCTACCCCTATAAGTACC 59.677 52.174 0.00 0.00 0.00 3.34
347 348 3.005155 CGCACACCTACCCCTATAAGTAC 59.995 52.174 0.00 0.00 0.00 2.73
348 349 3.225104 CGCACACCTACCCCTATAAGTA 58.775 50.000 0.00 0.00 0.00 2.24
349 350 2.037144 CGCACACCTACCCCTATAAGT 58.963 52.381 0.00 0.00 0.00 2.24
350 351 2.037144 ACGCACACCTACCCCTATAAG 58.963 52.381 0.00 0.00 0.00 1.73
351 352 1.758280 CACGCACACCTACCCCTATAA 59.242 52.381 0.00 0.00 0.00 0.98
352 353 1.342275 ACACGCACACCTACCCCTATA 60.342 52.381 0.00 0.00 0.00 1.31
353 354 0.616679 ACACGCACACCTACCCCTAT 60.617 55.000 0.00 0.00 0.00 2.57
354 355 1.228956 ACACGCACACCTACCCCTA 60.229 57.895 0.00 0.00 0.00 3.53
355 356 2.525877 ACACGCACACCTACCCCT 60.526 61.111 0.00 0.00 0.00 4.79
356 357 2.358247 CACACGCACACCTACCCC 60.358 66.667 0.00 0.00 0.00 4.95
357 358 1.959226 CACACACGCACACCTACCC 60.959 63.158 0.00 0.00 0.00 3.69
358 359 2.604174 GCACACACGCACACCTACC 61.604 63.158 0.00 0.00 0.00 3.18
359 360 2.935955 GCACACACGCACACCTAC 59.064 61.111 0.00 0.00 0.00 3.18
360 361 2.660224 CGCACACACGCACACCTA 60.660 61.111 0.00 0.00 0.00 3.08
361 362 4.830765 ACGCACACACGCACACCT 62.831 61.111 0.00 0.00 36.19 4.00
362 363 3.783588 GAACGCACACACGCACACC 62.784 63.158 0.00 0.00 36.19 4.16
363 364 2.350760 GAACGCACACACGCACAC 60.351 61.111 0.00 0.00 36.19 3.82
364 365 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
365 366 0.179250 CTATGAACGCACACACGCAC 60.179 55.000 0.00 0.00 36.19 5.34
366 367 1.288419 CCTATGAACGCACACACGCA 61.288 55.000 0.00 0.00 36.19 5.24
367 368 1.419922 CCTATGAACGCACACACGC 59.580 57.895 0.00 0.00 36.19 5.34
368 369 1.358725 CCCCTATGAACGCACACACG 61.359 60.000 0.00 0.00 39.50 4.49
369 370 0.321298 ACCCCTATGAACGCACACAC 60.321 55.000 0.00 0.00 0.00 3.82
370 371 0.321210 CACCCCTATGAACGCACACA 60.321 55.000 0.00 0.00 0.00 3.72
371 372 0.036765 TCACCCCTATGAACGCACAC 60.037 55.000 0.00 0.00 0.00 3.82
372 373 0.249120 CTCACCCCTATGAACGCACA 59.751 55.000 0.00 0.00 0.00 4.57
373 374 0.249398 ACTCACCCCTATGAACGCAC 59.751 55.000 0.00 0.00 0.00 5.34
374 375 0.249120 CACTCACCCCTATGAACGCA 59.751 55.000 0.00 0.00 0.00 5.24
375 376 0.249398 ACACTCACCCCTATGAACGC 59.751 55.000 0.00 0.00 0.00 4.84
376 377 3.717707 CATACACTCACCCCTATGAACG 58.282 50.000 0.00 0.00 0.00 3.95
377 378 3.467803 GCATACACTCACCCCTATGAAC 58.532 50.000 0.00 0.00 0.00 3.18
378 379 2.102420 CGCATACACTCACCCCTATGAA 59.898 50.000 0.00 0.00 0.00 2.57
379 380 1.686587 CGCATACACTCACCCCTATGA 59.313 52.381 0.00 0.00 0.00 2.15
380 381 1.873903 GCGCATACACTCACCCCTATG 60.874 57.143 0.30 0.00 0.00 2.23
381 382 0.393077 GCGCATACACTCACCCCTAT 59.607 55.000 0.30 0.00 0.00 2.57
382 383 1.820581 GCGCATACACTCACCCCTA 59.179 57.895 0.30 0.00 0.00 3.53
383 384 2.584608 GCGCATACACTCACCCCT 59.415 61.111 0.30 0.00 0.00 4.79
384 385 2.890474 CGCGCATACACTCACCCC 60.890 66.667 8.75 0.00 0.00 4.95
385 386 2.125673 ACGCGCATACACTCACCC 60.126 61.111 5.73 0.00 0.00 4.61
386 387 0.457166 TACACGCGCATACACTCACC 60.457 55.000 5.73 0.00 0.00 4.02
387 388 1.556564 ATACACGCGCATACACTCAC 58.443 50.000 5.73 0.00 0.00 3.51
388 389 3.636282 ATATACACGCGCATACACTCA 57.364 42.857 5.73 0.00 0.00 3.41
389 390 4.030306 GCTAATATACACGCGCATACACTC 59.970 45.833 5.73 0.00 0.00 3.51
390 391 3.918591 GCTAATATACACGCGCATACACT 59.081 43.478 5.73 0.00 0.00 3.55
391 392 3.241239 CGCTAATATACACGCGCATACAC 60.241 47.826 5.73 0.00 39.11 2.90
392 393 2.912345 CGCTAATATACACGCGCATACA 59.088 45.455 5.73 0.00 39.11 2.29
393 394 3.532213 CGCTAATATACACGCGCATAC 57.468 47.619 5.73 0.00 39.11 2.39
400 401 1.784856 ACGCAAGCGCTAATATACACG 59.215 47.619 12.05 8.49 44.19 4.49
401 402 2.155155 GGACGCAAGCGCTAATATACAC 59.845 50.000 12.05 0.00 44.19 2.90
402 403 2.400399 GGACGCAAGCGCTAATATACA 58.600 47.619 12.05 0.00 44.19 2.29
403 404 1.385743 CGGACGCAAGCGCTAATATAC 59.614 52.381 12.05 0.71 44.19 1.47
404 405 1.001048 ACGGACGCAAGCGCTAATATA 60.001 47.619 12.05 0.00 44.19 0.86
405 406 0.249322 ACGGACGCAAGCGCTAATAT 60.249 50.000 12.05 0.00 44.19 1.28
406 407 0.381445 TACGGACGCAAGCGCTAATA 59.619 50.000 12.05 0.00 44.19 0.98
407 408 0.249322 ATACGGACGCAAGCGCTAAT 60.249 50.000 12.05 0.00 44.19 1.73
408 409 0.458889 AATACGGACGCAAGCGCTAA 60.459 50.000 12.05 0.00 44.19 3.09
409 410 0.381445 TAATACGGACGCAAGCGCTA 59.619 50.000 12.05 0.00 44.19 4.26
410 411 1.140161 TAATACGGACGCAAGCGCT 59.860 52.632 15.09 2.64 44.19 5.92
411 412 1.271840 GTAATACGGACGCAAGCGC 59.728 57.895 15.09 0.00 44.19 5.92
412 413 1.551779 CGTAATACGGACGCAAGCG 59.448 57.895 13.50 13.50 40.81 4.68
435 436 9.677567 GCGTGTCACATTTGGAATATATATTTT 57.322 29.630 9.33 0.00 0.00 1.82
436 437 9.066892 AGCGTGTCACATTTGGAATATATATTT 57.933 29.630 9.33 0.00 0.00 1.40
437 438 8.621532 AGCGTGTCACATTTGGAATATATATT 57.378 30.769 7.72 7.72 0.00 1.28
438 439 9.371136 CTAGCGTGTCACATTTGGAATATATAT 57.629 33.333 3.42 0.00 0.00 0.86
439 440 8.581578 TCTAGCGTGTCACATTTGGAATATATA 58.418 33.333 3.42 0.00 0.00 0.86
440 441 7.441836 TCTAGCGTGTCACATTTGGAATATAT 58.558 34.615 3.42 0.00 0.00 0.86
441 442 6.811954 TCTAGCGTGTCACATTTGGAATATA 58.188 36.000 3.42 0.00 0.00 0.86
519 520 9.997482 TCAGTTTTCCGAATAATTTTATAGTGC 57.003 29.630 0.00 0.00 0.00 4.40
532 533 7.891561 TGGTGAAAATTATCAGTTTTCCGAAT 58.108 30.769 8.37 0.00 42.20 3.34
533 534 7.278461 TGGTGAAAATTATCAGTTTTCCGAA 57.722 32.000 8.37 0.00 42.20 4.30
535 536 5.572896 GCTGGTGAAAATTATCAGTTTTCCG 59.427 40.000 8.37 0.00 42.20 4.30
541 542 5.716228 TGATTGGCTGGTGAAAATTATCAGT 59.284 36.000 0.00 0.00 0.00 3.41
702 713 1.553704 GAGGTGGAGTTTGGTCCGTAT 59.446 52.381 0.00 0.00 39.81 3.06
883 911 0.771127 CTTGTGGTGGGGGAAGAAGA 59.229 55.000 0.00 0.00 0.00 2.87
902 930 2.617274 GGCGAGTTGTTGGTGGAGC 61.617 63.158 0.00 0.00 0.00 4.70
1200 1261 0.618680 AGGCCATGTAGAGCACCTCA 60.619 55.000 5.01 0.00 32.06 3.86
1305 1366 2.680352 GAGACGGGCTCCCTGACA 60.680 66.667 0.00 0.00 37.69 3.58
1509 1570 4.477975 GTGCTCCCGGACTCGTCG 62.478 72.222 0.73 0.00 33.95 5.12
1617 1678 1.753463 GATCTCGAGGGGTGTCCGT 60.753 63.158 13.56 0.00 41.52 4.69
1774 1835 4.168291 GGAGCCGGGAGAAGCAGG 62.168 72.222 2.18 0.00 0.00 4.85
1800 1861 0.545548 AGGAACCGGAGAAGGAAGCT 60.546 55.000 9.46 0.00 34.73 3.74
1839 1903 2.285743 GTCTTGCCCTCCCTCCCT 60.286 66.667 0.00 0.00 0.00 4.20
2562 6138 4.416601 CCCTTCCTCCCCCTCCGT 62.417 72.222 0.00 0.00 0.00 4.69
2580 6156 2.819595 CGTATGGCGCCACTGCTT 60.820 61.111 35.50 19.10 34.43 3.91
2586 6162 4.823419 CCGAACCGTATGGCGCCA 62.823 66.667 34.80 34.80 39.70 5.69
2751 6354 1.874872 ACCACGGTAAAAACACATCGG 59.125 47.619 0.00 0.00 0.00 4.18
2830 6433 4.617959 AGCATCATCTTATTGCAACATGC 58.382 39.130 0.00 7.26 45.29 4.06
2854 6457 9.601217 AACATGATCCATAGTACAACTAAAGAC 57.399 33.333 0.00 0.00 33.89 3.01
2869 6472 5.327732 ACCAGAGTTCAAAACATGATCCAT 58.672 37.500 0.00 0.00 38.03 3.41
2915 6519 6.978080 GTCTCCATTAGCAGAGAAGAAAGTAG 59.022 42.308 0.00 0.00 40.69 2.57
3039 6884 6.516355 CACATTAGTTTCTTGATTGTTCGTCG 59.484 38.462 0.00 0.00 0.00 5.12
3111 6957 8.492673 TGTTACCAACTAGCTTGATAATTCAG 57.507 34.615 1.04 0.00 32.27 3.02
3210 7056 6.553953 TTAGGTAAGAATGCTATCACACCA 57.446 37.500 11.83 0.00 31.38 4.17
3398 7248 7.388460 ACAAATTTTCATGCAAGGACAAAAA 57.612 28.000 0.00 0.00 0.00 1.94
3482 7332 5.107065 GGAAATCCTAGTTCACTTTGTCGTG 60.107 44.000 0.00 0.00 36.25 4.35
3533 7383 7.509141 ACTAATCACATCATTTGTCACACAA 57.491 32.000 0.00 0.00 36.00 3.33
3610 7860 3.473147 CTCTTCCCAGAGCACATGG 57.527 57.895 0.00 0.00 40.39 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.