Multiple sequence alignment - TraesCS4D01G011900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G011900 chr4D 100.000 3515 0 0 1 3515 5663472 5659958 0.000000e+00 6492.0
1 TraesCS4D01G011900 chr4D 85.421 487 42 16 3030 3515 5672352 5671894 2.450000e-131 479.0
2 TraesCS4D01G011900 chr4D 79.743 701 75 34 2843 3515 29412767 29413428 2.490000e-121 446.0
3 TraesCS4D01G011900 chr4D 75.839 447 60 27 700 1128 29412082 29412498 2.150000e-42 183.0
4 TraesCS4D01G011900 chr4A 93.031 2009 124 8 685 2687 597886577 597888575 0.000000e+00 2920.0
5 TraesCS4D01G011900 chr4A 96.687 483 15 1 2779 3260 597888881 597889363 0.000000e+00 802.0
6 TraesCS4D01G011900 chr4A 89.818 550 56 0 1049 1598 597848729 597849278 0.000000e+00 706.0
7 TraesCS4D01G011900 chr4A 79.429 700 78 34 2843 3515 573662648 573661988 5.390000e-118 435.0
8 TraesCS4D01G011900 chr4A 84.309 427 58 6 111 534 461709895 461710315 3.270000e-110 409.0
9 TraesCS4D01G011900 chr4A 83.981 412 56 7 132 541 37002275 37002678 1.530000e-103 387.0
10 TraesCS4D01G011900 chr4A 89.641 251 16 4 3265 3515 597889599 597889839 9.470000e-81 311.0
11 TraesCS4D01G011900 chr4A 90.047 211 21 0 3040 3250 597868251 597868461 1.240000e-69 274.0
12 TraesCS4D01G011900 chr4A 87.281 228 17 5 3290 3515 597868468 597868685 2.090000e-62 250.0
13 TraesCS4D01G011900 chr4A 75.168 447 63 27 700 1128 573663333 573662917 2.170000e-37 167.0
14 TraesCS4D01G011900 chr4A 90.323 124 9 2 2614 2737 597867692 597867812 3.630000e-35 159.0
15 TraesCS4D01G011900 chr4A 94.681 94 3 2 2672 2765 597888613 597888704 1.020000e-30 145.0
16 TraesCS4D01G011900 chr4A 91.549 71 3 3 569 637 597886447 597886516 1.040000e-15 95.3
17 TraesCS4D01G011900 chr4B 93.912 1774 96 7 848 2620 9947785 9946023 0.000000e+00 2667.0
18 TraesCS4D01G011900 chr4B 83.845 489 50 12 3027 3515 41844400 41844859 4.170000e-119 438.0
19 TraesCS4D01G011900 chr4B 81.667 480 39 18 3040 3515 9945156 9944722 1.550000e-93 353.0
20 TraesCS4D01G011900 chr4B 81.995 411 64 6 117 526 39305983 39305582 1.210000e-89 340.0
21 TraesCS4D01G011900 chr4B 97.959 98 2 0 736 833 9947934 9947837 1.680000e-38 171.0
22 TraesCS4D01G011900 chr4B 75.336 446 50 30 700 1128 41843538 41843940 3.630000e-35 159.0
23 TraesCS4D01G011900 chr7A 83.918 1996 236 45 642 2620 708656751 708654824 0.000000e+00 1829.0
24 TraesCS4D01G011900 chr7A 83.404 470 46 13 3049 3515 708660228 708659788 1.170000e-109 407.0
25 TraesCS4D01G011900 chr7A 85.000 80 10 2 2119 2197 676391047 676390969 2.910000e-11 80.5
26 TraesCS4D01G011900 chrUn 91.374 626 40 7 2892 3515 52143086 52142473 0.000000e+00 845.0
27 TraesCS4D01G011900 chr5D 96.305 433 12 1 107 539 437979821 437980249 0.000000e+00 708.0
28 TraesCS4D01G011900 chr5D 81.755 433 70 7 105 535 276060885 276061310 1.550000e-93 353.0
29 TraesCS4D01G011900 chr6D 83.217 429 64 5 107 533 418311649 418312071 1.530000e-103 387.0
30 TraesCS4D01G011900 chr1D 82.639 432 66 4 111 537 240596870 240596443 1.190000e-99 374.0
31 TraesCS4D01G011900 chr2D 84.433 379 50 8 111 483 600586702 600586327 7.170000e-97 364.0
32 TraesCS4D01G011900 chr2B 81.356 413 66 8 92 501 639445619 639446023 3.380000e-85 326.0
33 TraesCS4D01G011900 chr2B 87.500 56 7 0 2130 2185 18949083 18949028 8.140000e-07 65.8
34 TraesCS4D01G011900 chr2B 100.000 33 0 0 2130 2162 19073861 19073829 1.050000e-05 62.1
35 TraesCS4D01G011900 chr2B 96.970 33 1 0 2130 2162 18923398 18923430 4.900000e-04 56.5
36 TraesCS4D01G011900 chr2A 100.000 31 0 0 2132 2162 13067790 13067760 1.360000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G011900 chr4D 5659958 5663472 3514 True 6492.000000 6492 100.000000 1 3515 1 chr4D.!!$R1 3514
1 TraesCS4D01G011900 chr4D 29412082 29413428 1346 False 314.500000 446 77.791000 700 3515 2 chr4D.!!$F1 2815
2 TraesCS4D01G011900 chr4A 597886447 597889839 3392 False 854.660000 2920 93.117800 569 3515 5 chr4A.!!$F5 2946
3 TraesCS4D01G011900 chr4A 597848729 597849278 549 False 706.000000 706 89.818000 1049 1598 1 chr4A.!!$F3 549
4 TraesCS4D01G011900 chr4A 573661988 573663333 1345 True 301.000000 435 77.298500 700 3515 2 chr4A.!!$R1 2815
5 TraesCS4D01G011900 chr4A 597867692 597868685 993 False 227.666667 274 89.217000 2614 3515 3 chr4A.!!$F4 901
6 TraesCS4D01G011900 chr4B 9944722 9947934 3212 True 1063.666667 2667 91.179333 736 3515 3 chr4B.!!$R2 2779
7 TraesCS4D01G011900 chr4B 41843538 41844859 1321 False 298.500000 438 79.590500 700 3515 2 chr4B.!!$F1 2815
8 TraesCS4D01G011900 chr7A 708654824 708660228 5404 True 1118.000000 1829 83.661000 642 3515 2 chr7A.!!$R2 2873
9 TraesCS4D01G011900 chrUn 52142473 52143086 613 True 845.000000 845 91.374000 2892 3515 1 chrUn.!!$R1 623

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
71 72 0.029300 GAGCTGTTTTGCAACGCTCA 59.971 50.0 23.43 11.07 46.93 4.26 F
286 287 0.031111 ATCTGGACGATGGGGAGGAA 60.031 55.0 0.00 0.00 0.00 3.36 F
339 340 0.034198 TTGTCAATGACGCCCTTCGA 59.966 50.0 9.00 0.00 41.67 3.71 F
1464 1569 0.105964 CCTACTGCCTCCTCTGCCTA 60.106 60.0 0.00 0.00 0.00 3.93 F
2358 2463 0.769873 GCATCATGGGTGGAGGAGAT 59.230 55.0 0.00 0.00 0.00 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1245 1350 1.640069 GATCCGATCGACGTCGTCA 59.360 57.895 34.40 19.34 39.89 4.35 R
2265 2370 1.059913 CCTCCTTCAACCACTCCACT 58.940 55.000 0.00 0.00 0.00 4.00 R
2349 2454 2.060383 CACCGCCTCATCTCCTCCA 61.060 63.158 0.00 0.00 0.00 3.86 R
2430 2535 0.099436 GCAGGTTGATGAATGCCGAC 59.901 55.000 0.00 0.00 32.49 4.79 R
3441 4657 1.092348 GGCCCTTACGTAAGCCAAAG 58.908 55.000 26.57 14.11 45.07 2.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.686683 AAACTAACCAAATGCATCTCTAATACT 57.313 29.630 0.00 0.00 0.00 2.12
28 29 9.988815 ACTAACCAAATGCATCTCTAATACTAG 57.011 33.333 0.00 0.00 0.00 2.57
29 30 7.736447 AACCAAATGCATCTCTAATACTAGC 57.264 36.000 0.00 0.00 0.00 3.42
30 31 7.072263 ACCAAATGCATCTCTAATACTAGCT 57.928 36.000 0.00 0.00 0.00 3.32
31 32 7.512992 ACCAAATGCATCTCTAATACTAGCTT 58.487 34.615 0.00 0.00 0.00 3.74
32 33 7.995488 ACCAAATGCATCTCTAATACTAGCTTT 59.005 33.333 0.00 0.00 0.00 3.51
33 34 8.288208 CCAAATGCATCTCTAATACTAGCTTTG 58.712 37.037 0.00 0.00 0.00 2.77
34 35 8.834465 CAAATGCATCTCTAATACTAGCTTTGT 58.166 33.333 0.00 0.00 0.00 2.83
35 36 8.970859 AATGCATCTCTAATACTAGCTTTGTT 57.029 30.769 0.00 0.00 0.00 2.83
36 37 7.776933 TGCATCTCTAATACTAGCTTTGTTG 57.223 36.000 0.00 0.00 0.00 3.33
37 38 6.763135 TGCATCTCTAATACTAGCTTTGTTGG 59.237 38.462 0.00 0.00 0.00 3.77
38 39 6.203723 GCATCTCTAATACTAGCTTTGTTGGG 59.796 42.308 0.00 0.00 0.00 4.12
39 40 6.235231 TCTCTAATACTAGCTTTGTTGGGG 57.765 41.667 0.00 0.00 0.00 4.96
40 41 5.724854 TCTCTAATACTAGCTTTGTTGGGGT 59.275 40.000 0.00 0.00 0.00 4.95
41 42 5.741011 TCTAATACTAGCTTTGTTGGGGTG 58.259 41.667 0.00 0.00 0.00 4.61
42 43 2.194201 TACTAGCTTTGTTGGGGTGC 57.806 50.000 0.00 0.00 0.00 5.01
43 44 0.478507 ACTAGCTTTGTTGGGGTGCT 59.521 50.000 0.00 0.00 37.72 4.40
44 45 1.168714 CTAGCTTTGTTGGGGTGCTC 58.831 55.000 0.00 0.00 35.47 4.26
45 46 0.251165 TAGCTTTGTTGGGGTGCTCC 60.251 55.000 0.00 0.00 35.47 4.70
46 47 2.919494 GCTTTGTTGGGGTGCTCCG 61.919 63.158 0.00 0.00 36.01 4.63
47 48 2.203422 TTTGTTGGGGTGCTCCGG 60.203 61.111 0.00 0.00 36.01 5.14
48 49 2.690653 CTTTGTTGGGGTGCTCCGGA 62.691 60.000 2.93 2.93 36.01 5.14
49 50 2.969300 TTTGTTGGGGTGCTCCGGAC 62.969 60.000 0.00 0.00 36.01 4.79
50 51 3.948719 GTTGGGGTGCTCCGGACA 61.949 66.667 0.00 0.46 36.01 4.02
51 52 2.933287 TTGGGGTGCTCCGGACAT 60.933 61.111 0.00 0.00 36.01 3.06
52 53 3.266686 TTGGGGTGCTCCGGACATG 62.267 63.158 0.00 0.00 36.01 3.21
53 54 3.399181 GGGGTGCTCCGGACATGA 61.399 66.667 0.00 0.00 36.01 3.07
54 55 2.187946 GGGTGCTCCGGACATGAG 59.812 66.667 0.00 0.00 33.83 2.90
60 61 3.540211 CTCCGGACATGAGCTGTTT 57.460 52.632 0.00 0.00 38.54 2.83
61 62 1.813513 CTCCGGACATGAGCTGTTTT 58.186 50.000 0.00 0.00 38.54 2.43
62 63 1.466167 CTCCGGACATGAGCTGTTTTG 59.534 52.381 0.00 0.00 38.54 2.44
63 64 0.109597 CCGGACATGAGCTGTTTTGC 60.110 55.000 0.00 0.00 38.54 3.68
64 65 0.592637 CGGACATGAGCTGTTTTGCA 59.407 50.000 0.00 0.00 38.54 4.08
65 66 1.001487 CGGACATGAGCTGTTTTGCAA 60.001 47.619 0.00 0.00 38.54 4.08
66 67 2.397549 GGACATGAGCTGTTTTGCAAC 58.602 47.619 0.00 0.00 38.54 4.17
67 68 2.046313 GACATGAGCTGTTTTGCAACG 58.954 47.619 0.00 0.00 38.54 4.10
68 69 0.780002 CATGAGCTGTTTTGCAACGC 59.220 50.000 0.00 0.00 35.40 4.84
69 70 0.670162 ATGAGCTGTTTTGCAACGCT 59.330 45.000 0.00 4.95 42.00 5.07
70 71 2.788535 GAGCTGTTTTGCAACGCTC 58.211 52.632 17.78 17.78 44.52 5.03
71 72 0.029300 GAGCTGTTTTGCAACGCTCA 59.971 50.000 23.43 11.07 46.93 4.26
72 73 0.455410 AGCTGTTTTGCAACGCTCAA 59.545 45.000 0.00 0.00 37.89 3.02
73 74 0.848305 GCTGTTTTGCAACGCTCAAG 59.152 50.000 0.00 0.00 35.40 3.02
74 75 0.848305 CTGTTTTGCAACGCTCAAGC 59.152 50.000 0.00 0.00 35.40 4.01
84 85 2.125350 GCTCAAGCGACCCCTGAG 60.125 66.667 0.00 0.00 0.00 3.35
85 86 2.581354 CTCAAGCGACCCCTGAGG 59.419 66.667 0.00 0.00 43.78 3.86
96 97 3.646715 CCTGAGGGCCCCGTGAAA 61.647 66.667 21.43 0.00 0.00 2.69
97 98 2.434331 CTGAGGGCCCCGTGAAAA 59.566 61.111 21.43 0.00 0.00 2.29
98 99 1.228429 CTGAGGGCCCCGTGAAAAA 60.228 57.895 21.43 0.00 0.00 1.94
99 100 0.611896 CTGAGGGCCCCGTGAAAAAT 60.612 55.000 21.43 0.00 0.00 1.82
100 101 0.699399 TGAGGGCCCCGTGAAAAATA 59.301 50.000 21.43 0.00 0.00 1.40
101 102 1.075698 TGAGGGCCCCGTGAAAAATAA 59.924 47.619 21.43 0.00 0.00 1.40
102 103 2.172679 GAGGGCCCCGTGAAAAATAAA 58.827 47.619 21.43 0.00 0.00 1.40
103 104 2.563620 GAGGGCCCCGTGAAAAATAAAA 59.436 45.455 21.43 0.00 0.00 1.52
104 105 3.178046 AGGGCCCCGTGAAAAATAAAAT 58.822 40.909 21.43 0.00 0.00 1.82
105 106 3.585289 AGGGCCCCGTGAAAAATAAAATT 59.415 39.130 21.43 0.00 0.00 1.82
106 107 4.778427 AGGGCCCCGTGAAAAATAAAATTA 59.222 37.500 21.43 0.00 0.00 1.40
107 108 5.105106 AGGGCCCCGTGAAAAATAAAATTAG 60.105 40.000 21.43 0.00 0.00 1.73
108 109 5.105269 GGGCCCCGTGAAAAATAAAATTAGA 60.105 40.000 12.23 0.00 0.00 2.10
109 110 5.808540 GGCCCCGTGAAAAATAAAATTAGAC 59.191 40.000 0.00 0.00 0.00 2.59
110 111 6.350696 GGCCCCGTGAAAAATAAAATTAGACT 60.351 38.462 0.00 0.00 0.00 3.24
111 112 6.530181 GCCCCGTGAAAAATAAAATTAGACTG 59.470 38.462 0.00 0.00 0.00 3.51
112 113 7.576098 GCCCCGTGAAAAATAAAATTAGACTGA 60.576 37.037 0.00 0.00 0.00 3.41
113 114 8.301002 CCCCGTGAAAAATAAAATTAGACTGAA 58.699 33.333 0.00 0.00 0.00 3.02
114 115 9.855021 CCCGTGAAAAATAAAATTAGACTGAAT 57.145 29.630 0.00 0.00 0.00 2.57
129 130 9.965902 ATTAGACTGAATTCCACATTTTACTCT 57.034 29.630 2.27 0.00 0.00 3.24
130 131 9.793259 TTAGACTGAATTCCACATTTTACTCTT 57.207 29.630 2.27 0.00 0.00 2.85
131 132 8.697507 AGACTGAATTCCACATTTTACTCTTT 57.302 30.769 2.27 0.00 0.00 2.52
132 133 9.793259 AGACTGAATTCCACATTTTACTCTTTA 57.207 29.630 2.27 0.00 0.00 1.85
134 135 9.793259 ACTGAATTCCACATTTTACTCTTTAGA 57.207 29.630 2.27 0.00 0.00 2.10
140 141 9.679661 TTCCACATTTTACTCTTTAGATATGCA 57.320 29.630 0.00 0.00 0.00 3.96
141 142 9.851686 TCCACATTTTACTCTTTAGATATGCAT 57.148 29.630 3.79 3.79 0.00 3.96
149 150 9.665719 TTACTCTTTAGATATGCATTTGTGACA 57.334 29.630 3.54 0.00 0.00 3.58
150 151 7.978982 ACTCTTTAGATATGCATTTGTGACAC 58.021 34.615 3.54 0.00 0.00 3.67
151 152 7.826252 ACTCTTTAGATATGCATTTGTGACACT 59.174 33.333 3.54 0.00 0.00 3.55
152 153 9.317936 CTCTTTAGATATGCATTTGTGACACTA 57.682 33.333 3.54 0.00 0.00 2.74
153 154 9.665719 TCTTTAGATATGCATTTGTGACACTAA 57.334 29.630 3.54 6.01 0.00 2.24
158 159 8.840321 AGATATGCATTTGTGACACTAATTACC 58.160 33.333 3.54 5.55 0.00 2.85
159 160 5.637006 TGCATTTGTGACACTAATTACCC 57.363 39.130 11.83 3.55 0.00 3.69
160 161 4.155099 TGCATTTGTGACACTAATTACCCG 59.845 41.667 11.83 3.36 0.00 5.28
161 162 4.155280 GCATTTGTGACACTAATTACCCGT 59.845 41.667 11.83 0.00 0.00 5.28
162 163 5.335348 GCATTTGTGACACTAATTACCCGTT 60.335 40.000 11.83 0.00 0.00 4.44
163 164 5.676532 TTTGTGACACTAATTACCCGTTG 57.323 39.130 7.20 0.00 0.00 4.10
164 165 4.603989 TGTGACACTAATTACCCGTTGA 57.396 40.909 7.20 0.00 0.00 3.18
165 166 4.562082 TGTGACACTAATTACCCGTTGAG 58.438 43.478 7.20 0.00 0.00 3.02
166 167 4.039488 TGTGACACTAATTACCCGTTGAGT 59.961 41.667 7.20 0.00 0.00 3.41
167 168 4.387862 GTGACACTAATTACCCGTTGAGTG 59.612 45.833 0.00 0.00 40.09 3.51
168 169 3.930848 GACACTAATTACCCGTTGAGTGG 59.069 47.826 4.98 0.00 38.86 4.00
169 170 3.579586 ACACTAATTACCCGTTGAGTGGA 59.420 43.478 4.98 0.00 38.86 4.02
170 171 4.040706 ACACTAATTACCCGTTGAGTGGAA 59.959 41.667 4.98 0.00 38.86 3.53
171 172 4.998672 CACTAATTACCCGTTGAGTGGAAA 59.001 41.667 0.00 0.00 32.49 3.13
172 173 5.646360 CACTAATTACCCGTTGAGTGGAAAT 59.354 40.000 0.00 0.00 32.49 2.17
173 174 6.150474 CACTAATTACCCGTTGAGTGGAAATT 59.850 38.462 0.00 0.00 32.49 1.82
174 175 6.717997 ACTAATTACCCGTTGAGTGGAAATTT 59.282 34.615 0.00 0.00 0.00 1.82
175 176 4.839668 TTACCCGTTGAGTGGAAATTTG 57.160 40.909 0.00 0.00 0.00 2.32
176 177 2.661718 ACCCGTTGAGTGGAAATTTGT 58.338 42.857 0.00 0.00 0.00 2.83
177 178 3.028130 ACCCGTTGAGTGGAAATTTGTT 58.972 40.909 0.00 0.00 0.00 2.83
178 179 3.449377 ACCCGTTGAGTGGAAATTTGTTT 59.551 39.130 0.00 0.00 0.00 2.83
179 180 4.645588 ACCCGTTGAGTGGAAATTTGTTTA 59.354 37.500 0.00 0.00 0.00 2.01
180 181 5.127356 ACCCGTTGAGTGGAAATTTGTTTAA 59.873 36.000 0.00 0.00 0.00 1.52
181 182 6.043411 CCCGTTGAGTGGAAATTTGTTTAAA 58.957 36.000 0.00 0.00 0.00 1.52
182 183 6.535508 CCCGTTGAGTGGAAATTTGTTTAAAA 59.464 34.615 0.00 0.00 0.00 1.52
183 184 7.225734 CCCGTTGAGTGGAAATTTGTTTAAAAT 59.774 33.333 0.00 0.00 0.00 1.82
184 185 9.250624 CCGTTGAGTGGAAATTTGTTTAAAATA 57.749 29.630 0.00 0.00 0.00 1.40
187 188 9.549078 TTGAGTGGAAATTTGTTTAAAATACCC 57.451 29.630 0.00 0.00 0.00 3.69
188 189 8.151596 TGAGTGGAAATTTGTTTAAAATACCCC 58.848 33.333 0.00 0.00 0.00 4.95
189 190 8.035448 AGTGGAAATTTGTTTAAAATACCCCA 57.965 30.769 0.00 0.00 0.00 4.96
190 191 8.664992 AGTGGAAATTTGTTTAAAATACCCCAT 58.335 29.630 0.00 0.00 0.00 4.00
191 192 9.290988 GTGGAAATTTGTTTAAAATACCCCATT 57.709 29.630 0.00 0.00 0.00 3.16
192 193 9.868160 TGGAAATTTGTTTAAAATACCCCATTT 57.132 25.926 0.00 0.00 38.54 2.32
198 199 9.713713 TTTGTTTAAAATACCCCATTTAGAAGC 57.286 29.630 0.00 0.00 35.74 3.86
199 200 8.658840 TGTTTAAAATACCCCATTTAGAAGCT 57.341 30.769 0.00 0.00 35.74 3.74
200 201 9.095700 TGTTTAAAATACCCCATTTAGAAGCTT 57.904 29.630 0.00 0.00 35.74 3.74
201 202 9.938280 GTTTAAAATACCCCATTTAGAAGCTTT 57.062 29.630 0.00 0.00 35.74 3.51
202 203 9.936759 TTTAAAATACCCCATTTAGAAGCTTTG 57.063 29.630 0.00 0.00 35.74 2.77
203 204 6.544928 AAATACCCCATTTAGAAGCTTTGG 57.455 37.500 0.00 3.47 34.99 3.28
204 205 2.820178 ACCCCATTTAGAAGCTTTGGG 58.180 47.619 21.74 21.74 45.52 4.12
205 206 1.482182 CCCCATTTAGAAGCTTTGGGC 59.518 52.381 22.86 1.39 44.75 5.36
206 207 1.482182 CCCATTTAGAAGCTTTGGGCC 59.518 52.381 18.08 0.00 40.55 5.80
207 208 1.482182 CCATTTAGAAGCTTTGGGCCC 59.518 52.381 17.59 17.59 43.05 5.80
208 209 2.460669 CATTTAGAAGCTTTGGGCCCT 58.539 47.619 25.70 0.00 43.05 5.19
209 210 2.215942 TTTAGAAGCTTTGGGCCCTC 57.784 50.000 25.70 11.24 43.05 4.30
210 211 0.035439 TTAGAAGCTTTGGGCCCTCG 60.035 55.000 25.70 12.30 43.05 4.63
211 212 1.198759 TAGAAGCTTTGGGCCCTCGT 61.199 55.000 25.70 7.70 43.05 4.18
212 213 1.603739 GAAGCTTTGGGCCCTCGTT 60.604 57.895 25.70 9.28 43.05 3.85
213 214 1.152546 AAGCTTTGGGCCCTCGTTT 60.153 52.632 25.70 12.28 43.05 3.60
214 215 0.759060 AAGCTTTGGGCCCTCGTTTT 60.759 50.000 25.70 9.46 43.05 2.43
215 216 1.179174 AGCTTTGGGCCCTCGTTTTC 61.179 55.000 25.70 5.59 43.05 2.29
216 217 1.179174 GCTTTGGGCCCTCGTTTTCT 61.179 55.000 25.70 0.00 34.27 2.52
217 218 0.598065 CTTTGGGCCCTCGTTTTCTG 59.402 55.000 25.70 0.00 0.00 3.02
218 219 0.183971 TTTGGGCCCTCGTTTTCTGA 59.816 50.000 25.70 0.00 0.00 3.27
219 220 0.404040 TTGGGCCCTCGTTTTCTGAT 59.596 50.000 25.70 0.00 0.00 2.90
220 221 0.322456 TGGGCCCTCGTTTTCTGATG 60.322 55.000 25.70 0.00 0.00 3.07
221 222 1.657751 GGGCCCTCGTTTTCTGATGC 61.658 60.000 17.04 0.00 0.00 3.91
222 223 0.960364 GGCCCTCGTTTTCTGATGCA 60.960 55.000 0.00 0.00 0.00 3.96
223 224 1.098050 GCCCTCGTTTTCTGATGCAT 58.902 50.000 0.00 0.00 0.00 3.96
224 225 1.202222 GCCCTCGTTTTCTGATGCATG 60.202 52.381 2.46 0.00 0.00 4.06
225 226 2.086869 CCCTCGTTTTCTGATGCATGT 58.913 47.619 2.46 0.00 0.00 3.21
226 227 2.096496 CCCTCGTTTTCTGATGCATGTC 59.904 50.000 2.46 0.00 0.00 3.06
227 228 2.096496 CCTCGTTTTCTGATGCATGTCC 59.904 50.000 2.46 0.00 0.00 4.02
228 229 2.743664 CTCGTTTTCTGATGCATGTCCA 59.256 45.455 2.46 0.00 0.00 4.02
229 230 3.346315 TCGTTTTCTGATGCATGTCCAT 58.654 40.909 2.46 0.00 0.00 3.41
230 231 3.758023 TCGTTTTCTGATGCATGTCCATT 59.242 39.130 2.46 0.00 0.00 3.16
231 232 4.940654 TCGTTTTCTGATGCATGTCCATTA 59.059 37.500 2.46 0.00 0.00 1.90
232 233 5.065090 TCGTTTTCTGATGCATGTCCATTAG 59.935 40.000 2.46 0.00 32.00 1.73
233 234 5.585390 GTTTTCTGATGCATGTCCATTAGG 58.415 41.667 2.46 0.00 31.75 2.69
234 235 3.497103 TCTGATGCATGTCCATTAGGG 57.503 47.619 2.46 0.00 31.75 3.53
235 236 3.047857 TCTGATGCATGTCCATTAGGGA 58.952 45.455 2.46 0.00 45.89 4.20
245 246 2.196595 TCCATTAGGGAAGGTGTGAGG 58.803 52.381 0.00 0.00 44.80 3.86
246 247 1.916181 CCATTAGGGAAGGTGTGAGGT 59.084 52.381 0.00 0.00 40.01 3.85
247 248 2.356125 CCATTAGGGAAGGTGTGAGGTG 60.356 54.545 0.00 0.00 40.01 4.00
248 249 2.409064 TTAGGGAAGGTGTGAGGTGA 57.591 50.000 0.00 0.00 0.00 4.02
249 250 1.640917 TAGGGAAGGTGTGAGGTGAC 58.359 55.000 0.00 0.00 0.00 3.67
250 251 1.004918 GGGAAGGTGTGAGGTGACG 60.005 63.158 0.00 0.00 0.00 4.35
251 252 1.668151 GGAAGGTGTGAGGTGACGC 60.668 63.158 0.00 0.00 0.00 5.19
252 253 1.668151 GAAGGTGTGAGGTGACGCC 60.668 63.158 0.00 0.00 45.45 5.68
261 262 3.948719 GGTGACGCCTGGGGTTCA 61.949 66.667 18.11 13.59 0.00 3.18
262 263 2.112297 GTGACGCCTGGGGTTCAA 59.888 61.111 18.11 4.45 0.00 2.69
263 264 1.527380 GTGACGCCTGGGGTTCAAA 60.527 57.895 18.11 1.97 0.00 2.69
264 265 1.104577 GTGACGCCTGGGGTTCAAAA 61.105 55.000 18.11 0.00 0.00 2.44
265 266 0.395862 TGACGCCTGGGGTTCAAAAA 60.396 50.000 18.11 0.00 0.00 1.94
266 267 0.966179 GACGCCTGGGGTTCAAAAAT 59.034 50.000 18.11 0.00 0.00 1.82
267 268 2.164338 GACGCCTGGGGTTCAAAAATA 58.836 47.619 18.11 0.00 0.00 1.40
268 269 2.758423 GACGCCTGGGGTTCAAAAATAT 59.242 45.455 18.11 0.00 0.00 1.28
269 270 2.758423 ACGCCTGGGGTTCAAAAATATC 59.242 45.455 11.05 0.00 0.00 1.63
270 271 3.023832 CGCCTGGGGTTCAAAAATATCT 58.976 45.455 1.98 0.00 0.00 1.98
271 272 3.181487 CGCCTGGGGTTCAAAAATATCTG 60.181 47.826 1.98 0.00 0.00 2.90
272 273 3.132824 GCCTGGGGTTCAAAAATATCTGG 59.867 47.826 0.00 0.00 0.00 3.86
273 274 4.609301 CCTGGGGTTCAAAAATATCTGGA 58.391 43.478 0.00 0.00 0.00 3.86
274 275 4.402474 CCTGGGGTTCAAAAATATCTGGAC 59.598 45.833 0.00 0.00 0.00 4.02
275 276 4.013728 TGGGGTTCAAAAATATCTGGACG 58.986 43.478 0.00 0.00 0.00 4.79
276 277 4.263550 TGGGGTTCAAAAATATCTGGACGA 60.264 41.667 0.00 0.00 0.00 4.20
277 278 4.887655 GGGGTTCAAAAATATCTGGACGAT 59.112 41.667 0.00 0.00 36.11 3.73
278 279 5.221048 GGGGTTCAAAAATATCTGGACGATG 60.221 44.000 0.00 0.00 33.48 3.84
279 280 5.221048 GGGTTCAAAAATATCTGGACGATGG 60.221 44.000 0.00 0.00 33.48 3.51
280 281 5.221048 GGTTCAAAAATATCTGGACGATGGG 60.221 44.000 0.00 0.00 33.48 4.00
281 282 4.460263 TCAAAAATATCTGGACGATGGGG 58.540 43.478 0.00 0.00 33.48 4.96
282 283 4.165180 TCAAAAATATCTGGACGATGGGGA 59.835 41.667 0.00 0.00 33.48 4.81
283 284 4.357918 AAAATATCTGGACGATGGGGAG 57.642 45.455 0.00 0.00 33.48 4.30
284 285 1.944177 ATATCTGGACGATGGGGAGG 58.056 55.000 0.00 0.00 33.48 4.30
285 286 0.857675 TATCTGGACGATGGGGAGGA 59.142 55.000 0.00 0.00 33.48 3.71
286 287 0.031111 ATCTGGACGATGGGGAGGAA 60.031 55.000 0.00 0.00 0.00 3.36
287 288 0.031111 TCTGGACGATGGGGAGGAAT 60.031 55.000 0.00 0.00 0.00 3.01
288 289 0.107456 CTGGACGATGGGGAGGAATG 59.893 60.000 0.00 0.00 0.00 2.67
289 290 1.344953 TGGACGATGGGGAGGAATGG 61.345 60.000 0.00 0.00 0.00 3.16
290 291 1.054406 GGACGATGGGGAGGAATGGA 61.054 60.000 0.00 0.00 0.00 3.41
291 292 0.837272 GACGATGGGGAGGAATGGAA 59.163 55.000 0.00 0.00 0.00 3.53
292 293 0.546598 ACGATGGGGAGGAATGGAAC 59.453 55.000 0.00 0.00 0.00 3.62
309 310 4.792068 TGGAACAGATGGACAAAAGAAGT 58.208 39.130 0.00 0.00 0.00 3.01
310 311 4.821805 TGGAACAGATGGACAAAAGAAGTC 59.178 41.667 0.00 0.00 35.29 3.01
311 312 5.066593 GGAACAGATGGACAAAAGAAGTCT 58.933 41.667 0.00 0.00 36.29 3.24
312 313 5.049129 GGAACAGATGGACAAAAGAAGTCTG 60.049 44.000 0.00 0.00 38.01 3.51
313 314 4.392940 ACAGATGGACAAAAGAAGTCTGG 58.607 43.478 0.00 0.00 36.74 3.86
314 315 4.103153 ACAGATGGACAAAAGAAGTCTGGA 59.897 41.667 0.00 0.00 36.74 3.86
315 316 4.453819 CAGATGGACAAAAGAAGTCTGGAC 59.546 45.833 0.00 0.00 36.29 4.02
316 317 3.924114 TGGACAAAAGAAGTCTGGACA 57.076 42.857 3.51 0.00 36.29 4.02
317 318 4.437682 TGGACAAAAGAAGTCTGGACAT 57.562 40.909 3.51 0.00 36.29 3.06
318 319 4.136796 TGGACAAAAGAAGTCTGGACATG 58.863 43.478 3.51 0.00 36.29 3.21
319 320 4.141505 TGGACAAAAGAAGTCTGGACATGA 60.142 41.667 0.00 0.00 36.29 3.07
320 321 5.006386 GGACAAAAGAAGTCTGGACATGAT 58.994 41.667 0.00 0.00 36.29 2.45
321 322 5.474876 GGACAAAAGAAGTCTGGACATGATT 59.525 40.000 0.00 0.00 36.29 2.57
322 323 6.323203 ACAAAAGAAGTCTGGACATGATTG 57.677 37.500 0.00 4.71 0.00 2.67
323 324 5.829924 ACAAAAGAAGTCTGGACATGATTGT 59.170 36.000 0.00 5.23 39.32 2.71
324 325 7.783477 GACAAAAGAAGTCTGGACATGATTGTC 60.783 40.741 0.00 15.77 40.80 3.18
334 335 1.745087 ACATGATTGTCAATGACGCCC 59.255 47.619 9.00 0.76 34.95 6.13
335 336 2.019249 CATGATTGTCAATGACGCCCT 58.981 47.619 9.00 0.00 34.95 5.19
336 337 2.198827 TGATTGTCAATGACGCCCTT 57.801 45.000 9.00 0.00 34.95 3.95
337 338 2.083774 TGATTGTCAATGACGCCCTTC 58.916 47.619 9.00 2.09 34.95 3.46
338 339 1.062587 GATTGTCAATGACGCCCTTCG 59.937 52.381 9.00 0.00 45.38 3.79
339 340 0.034198 TTGTCAATGACGCCCTTCGA 59.966 50.000 9.00 0.00 41.67 3.71
340 341 0.249120 TGTCAATGACGCCCTTCGAT 59.751 50.000 9.00 0.00 41.67 3.59
341 342 0.931005 GTCAATGACGCCCTTCGATC 59.069 55.000 0.00 0.00 41.67 3.69
342 343 0.824109 TCAATGACGCCCTTCGATCT 59.176 50.000 0.00 0.00 41.67 2.75
343 344 1.207089 TCAATGACGCCCTTCGATCTT 59.793 47.619 0.00 0.00 41.67 2.40
344 345 2.009774 CAATGACGCCCTTCGATCTTT 58.990 47.619 0.00 0.00 41.67 2.52
345 346 3.118920 TCAATGACGCCCTTCGATCTTTA 60.119 43.478 0.00 0.00 41.67 1.85
346 347 2.288961 TGACGCCCTTCGATCTTTAC 57.711 50.000 0.00 0.00 41.67 2.01
347 348 1.546923 TGACGCCCTTCGATCTTTACA 59.453 47.619 0.00 0.00 41.67 2.41
348 349 1.925185 GACGCCCTTCGATCTTTACAC 59.075 52.381 0.00 0.00 41.67 2.90
349 350 1.274167 ACGCCCTTCGATCTTTACACA 59.726 47.619 0.00 0.00 41.67 3.72
350 351 2.093658 ACGCCCTTCGATCTTTACACAT 60.094 45.455 0.00 0.00 41.67 3.21
351 352 2.936498 CGCCCTTCGATCTTTACACATT 59.064 45.455 0.00 0.00 41.67 2.71
352 353 3.001330 CGCCCTTCGATCTTTACACATTC 59.999 47.826 0.00 0.00 41.67 2.67
353 354 4.192317 GCCCTTCGATCTTTACACATTCT 58.808 43.478 0.00 0.00 0.00 2.40
354 355 4.636206 GCCCTTCGATCTTTACACATTCTT 59.364 41.667 0.00 0.00 0.00 2.52
355 356 5.123979 GCCCTTCGATCTTTACACATTCTTT 59.876 40.000 0.00 0.00 0.00 2.52
356 357 6.349363 GCCCTTCGATCTTTACACATTCTTTT 60.349 38.462 0.00 0.00 0.00 2.27
357 358 7.148306 GCCCTTCGATCTTTACACATTCTTTTA 60.148 37.037 0.00 0.00 0.00 1.52
358 359 8.175716 CCCTTCGATCTTTACACATTCTTTTAC 58.824 37.037 0.00 0.00 0.00 2.01
359 360 7.898309 CCTTCGATCTTTACACATTCTTTTACG 59.102 37.037 0.00 0.00 0.00 3.18
360 361 8.523523 TTCGATCTTTACACATTCTTTTACGA 57.476 30.769 0.00 0.00 0.00 3.43
361 362 8.523523 TCGATCTTTACACATTCTTTTACGAA 57.476 30.769 0.00 0.00 0.00 3.85
362 363 9.146984 TCGATCTTTACACATTCTTTTACGAAT 57.853 29.630 0.00 0.00 34.07 3.34
363 364 9.409949 CGATCTTTACACATTCTTTTACGAATC 57.590 33.333 0.00 0.00 31.52 2.52
369 370 9.820229 TTACACATTCTTTTACGAATCATTGAC 57.180 29.630 0.00 0.00 31.52 3.18
370 371 7.015289 ACACATTCTTTTACGAATCATTGACG 58.985 34.615 0.00 0.00 31.52 4.35
371 372 6.021596 ACATTCTTTTACGAATCATTGACGC 58.978 36.000 0.00 0.00 31.52 5.19
372 373 5.599359 TTCTTTTACGAATCATTGACGCA 57.401 34.783 0.00 0.00 0.00 5.24
373 374 5.599359 TCTTTTACGAATCATTGACGCAA 57.401 34.783 0.00 0.00 0.00 4.85
374 375 5.379003 TCTTTTACGAATCATTGACGCAAC 58.621 37.500 0.00 0.00 0.00 4.17
375 376 4.733972 TTTACGAATCATTGACGCAACA 57.266 36.364 0.00 0.00 0.00 3.33
376 377 4.937696 TTACGAATCATTGACGCAACAT 57.062 36.364 0.00 0.00 0.00 2.71
377 378 3.121559 ACGAATCATTGACGCAACATG 57.878 42.857 0.00 0.00 0.00 3.21
378 379 1.841944 CGAATCATTGACGCAACATGC 59.158 47.619 0.00 0.00 40.69 4.06
379 380 2.728535 CGAATCATTGACGCAACATGCA 60.729 45.455 2.99 0.00 45.36 3.96
380 381 2.554806 ATCATTGACGCAACATGCAG 57.445 45.000 2.99 0.00 45.36 4.41
381 382 1.521580 TCATTGACGCAACATGCAGA 58.478 45.000 2.99 0.00 45.36 4.26
382 383 1.197492 TCATTGACGCAACATGCAGAC 59.803 47.619 2.99 0.00 45.36 3.51
383 384 0.523072 ATTGACGCAACATGCAGACC 59.477 50.000 2.99 0.00 45.36 3.85
384 385 1.514678 TTGACGCAACATGCAGACCC 61.515 55.000 2.99 0.00 45.36 4.46
385 386 1.672356 GACGCAACATGCAGACCCT 60.672 57.895 2.99 0.00 45.36 4.34
386 387 0.391130 GACGCAACATGCAGACCCTA 60.391 55.000 2.99 0.00 45.36 3.53
387 388 0.253044 ACGCAACATGCAGACCCTAT 59.747 50.000 2.99 0.00 45.36 2.57
388 389 0.940126 CGCAACATGCAGACCCTATC 59.060 55.000 2.99 0.00 45.36 2.08
389 390 1.473965 CGCAACATGCAGACCCTATCT 60.474 52.381 2.99 0.00 45.36 1.98
390 391 2.224042 CGCAACATGCAGACCCTATCTA 60.224 50.000 2.99 0.00 45.36 1.98
391 392 3.741075 CGCAACATGCAGACCCTATCTAA 60.741 47.826 2.99 0.00 45.36 2.10
392 393 3.561725 GCAACATGCAGACCCTATCTAAC 59.438 47.826 0.00 0.00 44.26 2.34
393 394 4.769688 CAACATGCAGACCCTATCTAACA 58.230 43.478 0.00 0.00 35.15 2.41
394 395 5.371526 CAACATGCAGACCCTATCTAACAT 58.628 41.667 0.00 0.00 35.15 2.71
395 396 6.524734 CAACATGCAGACCCTATCTAACATA 58.475 40.000 0.00 0.00 35.15 2.29
396 397 6.747414 ACATGCAGACCCTATCTAACATAA 57.253 37.500 0.00 0.00 35.15 1.90
397 398 7.136822 ACATGCAGACCCTATCTAACATAAA 57.863 36.000 0.00 0.00 35.15 1.40
398 399 7.749666 ACATGCAGACCCTATCTAACATAAAT 58.250 34.615 0.00 0.00 35.15 1.40
399 400 8.880244 ACATGCAGACCCTATCTAACATAAATA 58.120 33.333 0.00 0.00 35.15 1.40
400 401 9.725019 CATGCAGACCCTATCTAACATAAATAA 57.275 33.333 0.00 0.00 35.15 1.40
401 402 9.950496 ATGCAGACCCTATCTAACATAAATAAG 57.050 33.333 0.00 0.00 35.15 1.73
402 403 9.154632 TGCAGACCCTATCTAACATAAATAAGA 57.845 33.333 0.00 0.00 35.15 2.10
403 404 9.998106 GCAGACCCTATCTAACATAAATAAGAA 57.002 33.333 0.00 0.00 35.15 2.52
428 429 9.594478 AAAAATCAAAAATCAGAGTAAAACCGT 57.406 25.926 0.00 0.00 0.00 4.83
429 430 8.574196 AAATCAAAAATCAGAGTAAAACCGTG 57.426 30.769 0.00 0.00 0.00 4.94
430 431 6.067263 TCAAAAATCAGAGTAAAACCGTGG 57.933 37.500 0.00 0.00 0.00 4.94
431 432 4.499037 AAAATCAGAGTAAAACCGTGGC 57.501 40.909 0.00 0.00 0.00 5.01
432 433 2.851263 ATCAGAGTAAAACCGTGGCA 57.149 45.000 0.00 0.00 0.00 4.92
433 434 2.163818 TCAGAGTAAAACCGTGGCAG 57.836 50.000 0.00 0.00 0.00 4.85
434 435 1.689813 TCAGAGTAAAACCGTGGCAGA 59.310 47.619 0.00 0.00 0.00 4.26
435 436 2.103432 TCAGAGTAAAACCGTGGCAGAA 59.897 45.455 0.00 0.00 0.00 3.02
436 437 2.480419 CAGAGTAAAACCGTGGCAGAAG 59.520 50.000 0.00 0.00 0.00 2.85
437 438 2.104281 AGAGTAAAACCGTGGCAGAAGT 59.896 45.455 0.00 0.00 0.00 3.01
438 439 2.479275 GAGTAAAACCGTGGCAGAAGTC 59.521 50.000 0.00 0.00 0.00 3.01
439 440 2.104281 AGTAAAACCGTGGCAGAAGTCT 59.896 45.455 0.00 0.00 0.00 3.24
440 441 2.052782 AAAACCGTGGCAGAAGTCTT 57.947 45.000 0.00 0.00 0.00 3.01
441 442 1.594331 AAACCGTGGCAGAAGTCTTC 58.406 50.000 4.26 4.26 0.00 2.87
442 443 0.468226 AACCGTGGCAGAAGTCTTCA 59.532 50.000 14.97 0.00 0.00 3.02
443 444 0.468226 ACCGTGGCAGAAGTCTTCAA 59.532 50.000 14.97 0.00 0.00 2.69
444 445 1.134220 ACCGTGGCAGAAGTCTTCAAA 60.134 47.619 14.97 0.00 0.00 2.69
445 446 1.946768 CCGTGGCAGAAGTCTTCAAAA 59.053 47.619 14.97 0.00 0.00 2.44
446 447 2.554032 CCGTGGCAGAAGTCTTCAAAAT 59.446 45.455 14.97 0.00 0.00 1.82
447 448 3.558505 CGTGGCAGAAGTCTTCAAAATG 58.441 45.455 14.97 5.41 0.00 2.32
448 449 3.003689 CGTGGCAGAAGTCTTCAAAATGT 59.996 43.478 14.97 0.00 0.00 2.71
449 450 4.293415 GTGGCAGAAGTCTTCAAAATGTG 58.707 43.478 14.97 4.38 0.00 3.21
450 451 4.036734 GTGGCAGAAGTCTTCAAAATGTGA 59.963 41.667 14.97 0.00 0.00 3.58
451 452 4.828939 TGGCAGAAGTCTTCAAAATGTGAT 59.171 37.500 14.97 0.00 35.70 3.06
452 453 6.003326 TGGCAGAAGTCTTCAAAATGTGATA 58.997 36.000 14.97 0.00 35.70 2.15
453 454 6.660521 TGGCAGAAGTCTTCAAAATGTGATAT 59.339 34.615 14.97 0.00 35.70 1.63
454 455 7.177216 TGGCAGAAGTCTTCAAAATGTGATATT 59.823 33.333 14.97 0.00 35.70 1.28
455 456 8.031277 GGCAGAAGTCTTCAAAATGTGATATTT 58.969 33.333 14.97 0.00 35.70 1.40
456 457 9.415544 GCAGAAGTCTTCAAAATGTGATATTTT 57.584 29.630 14.97 0.00 35.70 1.82
478 479 8.600449 TTTTGATAAAAGTTGCACTAAATGGG 57.400 30.769 0.00 0.00 0.00 4.00
479 480 6.279513 TGATAAAAGTTGCACTAAATGGGG 57.720 37.500 0.00 0.00 0.00 4.96
480 481 5.777732 TGATAAAAGTTGCACTAAATGGGGT 59.222 36.000 0.00 0.00 0.00 4.95
481 482 6.948886 TGATAAAAGTTGCACTAAATGGGGTA 59.051 34.615 0.00 0.00 0.00 3.69
482 483 7.451877 TGATAAAAGTTGCACTAAATGGGGTAA 59.548 33.333 0.00 0.00 0.00 2.85
483 484 6.680148 AAAAGTTGCACTAAATGGGGTAAT 57.320 33.333 0.00 0.00 0.00 1.89
484 485 7.784470 AAAAGTTGCACTAAATGGGGTAATA 57.216 32.000 0.00 0.00 0.00 0.98
485 486 7.971368 AAAGTTGCACTAAATGGGGTAATAT 57.029 32.000 0.00 0.00 0.00 1.28
486 487 9.482175 AAAAGTTGCACTAAATGGGGTAATATA 57.518 29.630 0.00 0.00 0.00 0.86
487 488 9.654919 AAAGTTGCACTAAATGGGGTAATATAT 57.345 29.630 0.00 0.00 0.00 0.86
492 493 9.679661 TGCACTAAATGGGGTAATATATATGTG 57.320 33.333 0.00 0.00 0.00 3.21
493 494 9.681062 GCACTAAATGGGGTAATATATATGTGT 57.319 33.333 0.00 0.00 0.00 3.72
501 502 9.513906 TGGGGTAATATATATGTGTCACAAATG 57.486 33.333 10.28 0.00 0.00 2.32
502 503 9.515226 GGGGTAATATATATGTGTCACAAATGT 57.485 33.333 10.28 0.24 0.00 2.71
511 512 8.840833 ATATGTGTCACAAATGTACAACTACA 57.159 30.769 10.28 0.90 37.28 2.74
512 513 7.744087 ATGTGTCACAAATGTACAACTACAT 57.256 32.000 10.28 3.11 44.22 2.29
513 514 6.953843 TGTGTCACAAATGTACAACTACATG 58.046 36.000 2.31 0.00 41.92 3.21
514 515 6.017523 TGTGTCACAAATGTACAACTACATGG 60.018 38.462 2.31 0.00 41.92 3.66
515 516 6.017440 GTGTCACAAATGTACAACTACATGGT 60.017 38.462 0.00 0.00 41.92 3.55
516 517 7.171848 GTGTCACAAATGTACAACTACATGGTA 59.828 37.037 0.00 0.00 41.92 3.25
517 518 7.715686 TGTCACAAATGTACAACTACATGGTAA 59.284 33.333 0.00 0.00 41.92 2.85
518 519 8.227791 GTCACAAATGTACAACTACATGGTAAG 58.772 37.037 0.00 0.00 41.92 2.34
519 520 8.151596 TCACAAATGTACAACTACATGGTAAGA 58.848 33.333 0.00 0.00 41.92 2.10
520 521 8.779303 CACAAATGTACAACTACATGGTAAGAA 58.221 33.333 0.00 0.00 41.92 2.52
521 522 8.999431 ACAAATGTACAACTACATGGTAAGAAG 58.001 33.333 0.00 0.00 41.92 2.85
522 523 8.999431 CAAATGTACAACTACATGGTAAGAAGT 58.001 33.333 0.00 0.00 41.92 3.01
523 524 8.547967 AATGTACAACTACATGGTAAGAAGTG 57.452 34.615 0.00 0.00 41.92 3.16
524 525 6.460781 TGTACAACTACATGGTAAGAAGTGG 58.539 40.000 0.00 0.00 0.00 4.00
525 526 5.818678 ACAACTACATGGTAAGAAGTGGA 57.181 39.130 0.00 0.00 0.00 4.02
526 527 6.182507 ACAACTACATGGTAAGAAGTGGAA 57.817 37.500 0.00 0.00 0.00 3.53
527 528 6.779860 ACAACTACATGGTAAGAAGTGGAAT 58.220 36.000 0.00 0.00 0.00 3.01
528 529 7.231467 ACAACTACATGGTAAGAAGTGGAATT 58.769 34.615 0.00 0.00 0.00 2.17
529 530 7.390718 ACAACTACATGGTAAGAAGTGGAATTC 59.609 37.037 0.00 0.00 0.00 2.17
530 531 7.016153 ACTACATGGTAAGAAGTGGAATTCA 57.984 36.000 7.93 0.00 0.00 2.57
531 532 6.879458 ACTACATGGTAAGAAGTGGAATTCAC 59.121 38.462 7.93 4.02 46.39 3.18
553 554 9.536558 TTCACTCATAAAATTAAAATCGTCGTG 57.463 29.630 0.00 0.00 0.00 4.35
554 555 8.172484 TCACTCATAAAATTAAAATCGTCGTGG 58.828 33.333 0.00 0.00 0.00 4.94
555 556 6.964934 ACTCATAAAATTAAAATCGTCGTGGC 59.035 34.615 0.00 0.00 0.00 5.01
556 557 6.843208 TCATAAAATTAAAATCGTCGTGGCA 58.157 32.000 0.00 0.00 0.00 4.92
557 558 6.743627 TCATAAAATTAAAATCGTCGTGGCAC 59.256 34.615 7.79 7.79 0.00 5.01
558 559 4.491234 AAATTAAAATCGTCGTGGCACA 57.509 36.364 19.09 1.83 0.00 4.57
559 560 4.695217 AATTAAAATCGTCGTGGCACAT 57.305 36.364 19.09 0.00 44.52 3.21
571 572 4.868026 GCACATGGCCCACGTATA 57.132 55.556 0.00 0.00 36.11 1.47
572 573 3.322514 GCACATGGCCCACGTATAT 57.677 52.632 0.00 0.00 36.11 0.86
573 574 1.604604 GCACATGGCCCACGTATATT 58.395 50.000 0.00 0.00 36.11 1.28
574 575 2.773487 GCACATGGCCCACGTATATTA 58.227 47.619 0.00 0.00 36.11 0.98
575 576 2.742053 GCACATGGCCCACGTATATTAG 59.258 50.000 0.00 0.00 36.11 1.73
576 577 3.556213 GCACATGGCCCACGTATATTAGA 60.556 47.826 0.00 0.00 36.11 2.10
577 578 4.832248 CACATGGCCCACGTATATTAGAT 58.168 43.478 0.00 0.00 0.00 1.98
578 579 5.625886 GCACATGGCCCACGTATATTAGATA 60.626 44.000 0.00 0.00 36.11 1.98
579 580 6.582636 CACATGGCCCACGTATATTAGATAT 58.417 40.000 0.00 0.00 0.00 1.63
580 581 7.685884 GCACATGGCCCACGTATATTAGATATA 60.686 40.741 0.00 0.00 36.11 0.86
581 582 8.201464 CACATGGCCCACGTATATTAGATATAA 58.799 37.037 0.00 0.00 30.07 0.98
582 583 8.421784 ACATGGCCCACGTATATTAGATATAAG 58.578 37.037 0.00 0.00 34.64 1.73
583 584 8.638873 CATGGCCCACGTATATTAGATATAAGA 58.361 37.037 0.00 0.00 33.33 2.10
637 638 0.887387 TTGGTCTAACAGCCGGCAAC 60.887 55.000 31.54 10.21 0.00 4.17
640 641 2.358247 CTAACAGCCGGCAACCGT 60.358 61.111 31.54 17.07 46.80 4.83
659 690 3.064820 CCGTGTGCTGTTGTAGTTTTCTT 59.935 43.478 0.00 0.00 0.00 2.52
660 691 4.028383 CGTGTGCTGTTGTAGTTTTCTTG 58.972 43.478 0.00 0.00 0.00 3.02
664 695 5.034797 GTGCTGTTGTAGTTTTCTTGGTTC 58.965 41.667 0.00 0.00 0.00 3.62
667 698 5.728351 TGTTGTAGTTTTCTTGGTTCTCG 57.272 39.130 0.00 0.00 0.00 4.04
668 699 5.180271 TGTTGTAGTTTTCTTGGTTCTCGT 58.820 37.500 0.00 0.00 0.00 4.18
669 700 5.292589 TGTTGTAGTTTTCTTGGTTCTCGTC 59.707 40.000 0.00 0.00 0.00 4.20
670 701 4.374399 TGTAGTTTTCTTGGTTCTCGTCC 58.626 43.478 0.00 0.00 0.00 4.79
671 702 3.553828 AGTTTTCTTGGTTCTCGTCCA 57.446 42.857 0.00 0.00 0.00 4.02
672 703 3.881220 AGTTTTCTTGGTTCTCGTCCAA 58.119 40.909 0.00 0.00 41.84 3.53
673 704 3.626217 AGTTTTCTTGGTTCTCGTCCAAC 59.374 43.478 0.00 0.00 39.62 3.77
674 705 2.992124 TTCTTGGTTCTCGTCCAACA 57.008 45.000 0.00 0.00 39.62 3.33
675 706 2.992124 TCTTGGTTCTCGTCCAACAA 57.008 45.000 0.00 0.00 39.62 2.83
676 707 3.485463 TCTTGGTTCTCGTCCAACAAT 57.515 42.857 0.00 0.00 39.62 2.71
677 708 3.399330 TCTTGGTTCTCGTCCAACAATC 58.601 45.455 0.00 0.00 39.62 2.67
678 709 1.790755 TGGTTCTCGTCCAACAATCG 58.209 50.000 0.00 0.00 31.50 3.34
679 710 1.341852 TGGTTCTCGTCCAACAATCGA 59.658 47.619 0.00 0.00 31.50 3.59
680 711 2.028476 TGGTTCTCGTCCAACAATCGAT 60.028 45.455 0.00 0.00 33.26 3.59
681 712 2.603560 GGTTCTCGTCCAACAATCGATC 59.396 50.000 0.00 0.00 33.26 3.69
682 713 3.512680 GTTCTCGTCCAACAATCGATCT 58.487 45.455 0.00 0.00 33.26 2.75
683 714 3.150848 TCTCGTCCAACAATCGATCTG 57.849 47.619 0.00 2.17 33.26 2.90
714 745 1.406341 GGTACCATCGCTGTTTGCCTA 60.406 52.381 7.15 0.00 38.78 3.93
790 829 8.058847 TCTTGAACATTTTAGGGCCATATAACT 58.941 33.333 6.18 0.00 0.00 2.24
834 879 1.638133 CAGCTCAGGTCAGAATCACG 58.362 55.000 0.00 0.00 0.00 4.35
838 883 2.480416 GCTCAGGTCAGAATCACGTAGG 60.480 54.545 0.00 0.00 0.00 3.18
841 886 4.788679 TCAGGTCAGAATCACGTAGGATA 58.211 43.478 0.00 0.00 0.00 2.59
844 889 4.524714 AGGTCAGAATCACGTAGGATATGG 59.475 45.833 0.00 0.00 0.00 2.74
949 1031 3.369400 CGCCATTCCAACGCCCAA 61.369 61.111 0.00 0.00 0.00 4.12
989 1071 0.656785 CCGTCACGCTCTAGGAGTAC 59.343 60.000 0.00 0.00 31.39 2.73
992 1074 1.593933 GTCACGCTCTAGGAGTACGAG 59.406 57.143 0.00 0.00 31.39 4.18
993 1075 1.206610 TCACGCTCTAGGAGTACGAGT 59.793 52.381 0.00 0.00 31.39 4.18
994 1076 2.428530 TCACGCTCTAGGAGTACGAGTA 59.571 50.000 0.00 0.00 31.39 2.59
995 1077 2.796031 CACGCTCTAGGAGTACGAGTAG 59.204 54.545 0.00 0.00 31.39 2.57
996 1078 2.224018 ACGCTCTAGGAGTACGAGTAGG 60.224 54.545 0.00 0.00 31.39 3.18
997 1079 2.224018 CGCTCTAGGAGTACGAGTAGGT 60.224 54.545 0.00 0.00 31.39 3.08
1034 1133 3.225798 AAACCCGGACGACGTGGA 61.226 61.111 4.58 0.00 42.24 4.02
1095 1200 3.716195 CACGGCCACCTGATCCCA 61.716 66.667 2.24 0.00 0.00 4.37
1101 1206 2.063979 CCACCTGATCCCAGCGGTA 61.064 63.158 0.00 0.00 39.07 4.02
1257 1362 2.747822 CGGGACTGACGACGTCGAT 61.748 63.158 41.52 26.13 43.02 3.59
1380 1485 1.153568 CGTGTCCGACATCTGCCAT 60.154 57.895 4.13 0.00 35.63 4.40
1464 1569 0.105964 CCTACTGCCTCCTCTGCCTA 60.106 60.000 0.00 0.00 0.00 3.93
2083 2188 2.611800 TGCTGATCAGGGGCTGGT 60.612 61.111 23.89 0.00 31.51 4.00
2101 2206 1.375908 TCACCGCAACAGCTGATCC 60.376 57.895 23.35 0.00 0.00 3.36
2349 2454 1.918253 GGTGAGGAGCATCATGGGT 59.082 57.895 0.00 0.00 36.25 4.51
2358 2463 0.769873 GCATCATGGGTGGAGGAGAT 59.230 55.000 0.00 0.00 0.00 2.75
2481 2586 0.882927 GGCGTTACCAAGCAGTGACA 60.883 55.000 0.00 0.00 38.86 3.58
2728 3308 1.440850 CTGCGCAACAACCATCACG 60.441 57.895 13.05 0.00 0.00 4.35
2776 3356 8.442660 TTTTTAGAGAGAGAAGATTTCCTCCT 57.557 34.615 0.00 0.00 31.45 3.69
2777 3357 7.654022 TTTAGAGAGAGAAGATTTCCTCCTC 57.346 40.000 0.00 0.00 31.45 3.71
2779 3359 4.956075 AGAGAGAGAAGATTTCCTCCTCAC 59.044 45.833 0.00 0.00 33.29 3.51
2781 3361 4.711355 AGAGAGAAGATTTCCTCCTCACAG 59.289 45.833 0.00 0.00 31.45 3.66
2890 3830 3.550437 ATATGGTCTCACTTCACAGCC 57.450 47.619 0.00 0.00 0.00 4.85
2997 3937 6.790282 TCTGAATACTCTTGATCTGAAGACG 58.210 40.000 0.00 0.00 0.00 4.18
3124 4091 1.219664 CGTTGCCGGTTCCCTCATA 59.780 57.895 1.90 0.00 0.00 2.15
3292 4499 5.518847 CAGATTTACGATGAATGGTACGTGT 59.481 40.000 0.00 0.00 39.28 4.49
3318 4527 4.130857 CAAGCATGATGAGAAGCAGATCT 58.869 43.478 0.00 0.00 0.00 2.75
3321 4530 3.494573 GCATGATGAGAAGCAGATCTCCA 60.495 47.826 0.00 4.45 44.27 3.86
3343 4552 5.469479 CATGACCCAAACTACCAATCAAAC 58.531 41.667 0.00 0.00 0.00 2.93
3434 4650 1.821332 GAGGGCGGCAGAATTCTGG 60.821 63.158 31.41 19.36 43.94 3.86
3435 4651 2.257409 GAGGGCGGCAGAATTCTGGA 62.257 60.000 31.41 0.00 43.94 3.86
3436 4652 1.152881 GGGCGGCAGAATTCTGGAT 60.153 57.895 31.41 0.00 43.94 3.41
3437 4653 1.169034 GGGCGGCAGAATTCTGGATC 61.169 60.000 31.41 17.71 43.94 3.36
3438 4654 0.179034 GGCGGCAGAATTCTGGATCT 60.179 55.000 31.41 0.00 43.94 2.75
3439 4655 0.942962 GCGGCAGAATTCTGGATCTG 59.057 55.000 31.41 21.76 43.94 2.90
3440 4656 1.473965 GCGGCAGAATTCTGGATCTGA 60.474 52.381 31.41 0.00 44.64 3.27
3441 4657 2.208431 CGGCAGAATTCTGGATCTGAC 58.792 52.381 31.41 15.79 46.22 3.51
3442 4658 3.557228 GGCAGAATTCTGGATCTGACT 57.443 47.619 31.41 0.00 46.20 3.41
3454 4670 3.512329 TGGATCTGACTTTGGCTTACGTA 59.488 43.478 0.00 0.00 0.00 3.57
3468 4684 0.974010 TACGTAAGGGCCAGGACCAG 60.974 60.000 16.27 4.14 46.39 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.988815 CTAGTATTAGAGATGCATTTGGTTAGT 57.011 33.333 0.00 0.00 0.00 2.24
3 4 8.930760 GCTAGTATTAGAGATGCATTTGGTTAG 58.069 37.037 0.00 0.00 0.00 2.34
5 6 7.512992 AGCTAGTATTAGAGATGCATTTGGTT 58.487 34.615 0.00 0.00 0.00 3.67
7 8 7.976135 AAGCTAGTATTAGAGATGCATTTGG 57.024 36.000 0.00 0.00 0.00 3.28
8 9 8.834465 ACAAAGCTAGTATTAGAGATGCATTTG 58.166 33.333 0.00 0.00 0.00 2.32
9 10 8.970859 ACAAAGCTAGTATTAGAGATGCATTT 57.029 30.769 0.00 0.00 0.00 2.32
10 11 8.834465 CAACAAAGCTAGTATTAGAGATGCATT 58.166 33.333 0.00 0.00 0.00 3.56
11 12 7.443575 CCAACAAAGCTAGTATTAGAGATGCAT 59.556 37.037 0.00 0.00 0.00 3.96
12 13 6.763135 CCAACAAAGCTAGTATTAGAGATGCA 59.237 38.462 0.00 0.00 0.00 3.96
13 14 6.203723 CCCAACAAAGCTAGTATTAGAGATGC 59.796 42.308 0.00 0.00 0.00 3.91
14 15 6.708054 CCCCAACAAAGCTAGTATTAGAGATG 59.292 42.308 0.00 0.00 0.00 2.90
16 17 5.724854 ACCCCAACAAAGCTAGTATTAGAGA 59.275 40.000 0.00 0.00 0.00 3.10
17 18 5.817816 CACCCCAACAAAGCTAGTATTAGAG 59.182 44.000 0.00 0.00 0.00 2.43
18 19 5.741011 CACCCCAACAAAGCTAGTATTAGA 58.259 41.667 0.00 0.00 0.00 2.10
19 20 4.335594 GCACCCCAACAAAGCTAGTATTAG 59.664 45.833 0.00 0.00 0.00 1.73
20 21 4.018779 AGCACCCCAACAAAGCTAGTATTA 60.019 41.667 0.00 0.00 33.06 0.98
21 22 3.089284 GCACCCCAACAAAGCTAGTATT 58.911 45.455 0.00 0.00 0.00 1.89
22 23 2.308866 AGCACCCCAACAAAGCTAGTAT 59.691 45.455 0.00 0.00 33.06 2.12
23 24 1.702957 AGCACCCCAACAAAGCTAGTA 59.297 47.619 0.00 0.00 33.06 1.82
24 25 0.478507 AGCACCCCAACAAAGCTAGT 59.521 50.000 0.00 0.00 33.06 2.57
25 26 1.168714 GAGCACCCCAACAAAGCTAG 58.831 55.000 0.00 0.00 35.36 3.42
26 27 0.251165 GGAGCACCCCAACAAAGCTA 60.251 55.000 0.00 0.00 35.36 3.32
27 28 1.531602 GGAGCACCCCAACAAAGCT 60.532 57.895 0.00 0.00 38.43 3.74
28 29 2.919494 CGGAGCACCCCAACAAAGC 61.919 63.158 0.00 0.00 0.00 3.51
29 30 2.268076 CCGGAGCACCCCAACAAAG 61.268 63.158 0.00 0.00 0.00 2.77
30 31 2.203422 CCGGAGCACCCCAACAAA 60.203 61.111 0.00 0.00 0.00 2.83
31 32 3.172106 TCCGGAGCACCCCAACAA 61.172 61.111 0.00 0.00 0.00 2.83
32 33 3.948719 GTCCGGAGCACCCCAACA 61.949 66.667 3.06 0.00 0.00 3.33
33 34 3.268103 ATGTCCGGAGCACCCCAAC 62.268 63.158 3.06 0.00 0.00 3.77
34 35 2.933287 ATGTCCGGAGCACCCCAA 60.933 61.111 3.06 0.00 0.00 4.12
35 36 3.716195 CATGTCCGGAGCACCCCA 61.716 66.667 3.06 0.00 0.00 4.96
36 37 3.391665 CTCATGTCCGGAGCACCCC 62.392 68.421 3.06 0.00 0.00 4.95
37 38 2.187946 CTCATGTCCGGAGCACCC 59.812 66.667 3.06 0.00 0.00 4.61
42 43 1.466167 CAAAACAGCTCATGTCCGGAG 59.534 52.381 3.06 0.00 43.00 4.63
43 44 1.522668 CAAAACAGCTCATGTCCGGA 58.477 50.000 0.00 0.00 43.00 5.14
44 45 0.109597 GCAAAACAGCTCATGTCCGG 60.110 55.000 0.00 0.00 43.00 5.14
45 46 0.592637 TGCAAAACAGCTCATGTCCG 59.407 50.000 0.00 0.00 43.00 4.79
46 47 2.397549 GTTGCAAAACAGCTCATGTCC 58.602 47.619 0.00 0.00 43.00 4.02
47 48 2.046313 CGTTGCAAAACAGCTCATGTC 58.954 47.619 0.00 0.00 43.00 3.06
48 49 1.865248 GCGTTGCAAAACAGCTCATGT 60.865 47.619 0.00 0.00 46.97 3.21
49 50 0.780002 GCGTTGCAAAACAGCTCATG 59.220 50.000 0.00 0.00 34.99 3.07
50 51 0.670162 AGCGTTGCAAAACAGCTCAT 59.330 45.000 0.00 0.00 31.94 2.90
51 52 2.105984 AGCGTTGCAAAACAGCTCA 58.894 47.368 0.00 0.00 31.94 4.26
52 53 2.788535 GAGCGTTGCAAAACAGCTC 58.211 52.632 22.57 22.57 45.74 4.09
53 54 0.455410 TTGAGCGTTGCAAAACAGCT 59.545 45.000 16.40 16.40 41.29 4.24
54 55 0.848305 CTTGAGCGTTGCAAAACAGC 59.152 50.000 0.00 4.98 0.00 4.40
55 56 0.848305 GCTTGAGCGTTGCAAAACAG 59.152 50.000 0.00 0.00 0.00 3.16
56 57 2.956469 GCTTGAGCGTTGCAAAACA 58.044 47.368 0.00 0.00 0.00 2.83
67 68 2.125350 CTCAGGGGTCGCTTGAGC 60.125 66.667 14.77 0.00 39.41 4.26
68 69 2.581354 CCTCAGGGGTCGCTTGAG 59.419 66.667 18.78 18.78 38.41 3.02
79 80 2.706952 TTTTTCACGGGGCCCTCAGG 62.707 60.000 24.38 11.42 0.00 3.86
80 81 0.611896 ATTTTTCACGGGGCCCTCAG 60.612 55.000 24.38 16.14 0.00 3.35
81 82 0.699399 TATTTTTCACGGGGCCCTCA 59.301 50.000 24.38 0.01 0.00 3.86
82 83 1.842052 TTATTTTTCACGGGGCCCTC 58.158 50.000 24.38 11.27 0.00 4.30
83 84 2.312424 TTTATTTTTCACGGGGCCCT 57.688 45.000 24.38 4.65 0.00 5.19
84 85 3.620427 ATTTTATTTTTCACGGGGCCC 57.380 42.857 15.76 15.76 0.00 5.80
85 86 5.808540 GTCTAATTTTATTTTTCACGGGGCC 59.191 40.000 0.00 0.00 0.00 5.80
86 87 6.530181 CAGTCTAATTTTATTTTTCACGGGGC 59.470 38.462 0.00 0.00 0.00 5.80
87 88 7.822658 TCAGTCTAATTTTATTTTTCACGGGG 58.177 34.615 0.00 0.00 0.00 5.73
88 89 9.855021 ATTCAGTCTAATTTTATTTTTCACGGG 57.145 29.630 0.00 0.00 0.00 5.28
103 104 9.965902 AGAGTAAAATGTGGAATTCAGTCTAAT 57.034 29.630 7.93 0.00 0.00 1.73
104 105 9.793259 AAGAGTAAAATGTGGAATTCAGTCTAA 57.207 29.630 7.93 0.00 0.00 2.10
105 106 9.793259 AAAGAGTAAAATGTGGAATTCAGTCTA 57.207 29.630 7.93 0.00 0.00 2.59
106 107 8.697507 AAAGAGTAAAATGTGGAATTCAGTCT 57.302 30.769 7.93 0.00 0.00 3.24
108 109 9.793259 TCTAAAGAGTAAAATGTGGAATTCAGT 57.207 29.630 7.93 0.00 0.00 3.41
114 115 9.679661 TGCATATCTAAAGAGTAAAATGTGGAA 57.320 29.630 0.00 0.00 0.00 3.53
115 116 9.851686 ATGCATATCTAAAGAGTAAAATGTGGA 57.148 29.630 0.00 0.00 0.00 4.02
123 124 9.665719 TGTCACAAATGCATATCTAAAGAGTAA 57.334 29.630 0.00 0.00 0.00 2.24
124 125 9.098355 GTGTCACAAATGCATATCTAAAGAGTA 57.902 33.333 0.00 0.00 0.00 2.59
125 126 7.826252 AGTGTCACAAATGCATATCTAAAGAGT 59.174 33.333 0.00 0.00 0.00 3.24
126 127 8.206325 AGTGTCACAAATGCATATCTAAAGAG 57.794 34.615 0.00 0.00 0.00 2.85
127 128 9.665719 TTAGTGTCACAAATGCATATCTAAAGA 57.334 29.630 0.00 0.00 0.00 2.52
132 133 8.840321 GGTAATTAGTGTCACAAATGCATATCT 58.160 33.333 0.00 0.00 0.00 1.98
133 134 8.076178 GGGTAATTAGTGTCACAAATGCATATC 58.924 37.037 0.00 0.00 0.00 1.63
134 135 7.255104 CGGGTAATTAGTGTCACAAATGCATAT 60.255 37.037 0.00 0.00 0.00 1.78
135 136 6.037720 CGGGTAATTAGTGTCACAAATGCATA 59.962 38.462 0.00 0.00 0.00 3.14
136 137 5.163663 CGGGTAATTAGTGTCACAAATGCAT 60.164 40.000 5.62 0.00 0.00 3.96
137 138 4.155099 CGGGTAATTAGTGTCACAAATGCA 59.845 41.667 5.62 0.00 0.00 3.96
138 139 4.155280 ACGGGTAATTAGTGTCACAAATGC 59.845 41.667 5.62 0.00 0.00 3.56
139 140 5.873179 ACGGGTAATTAGTGTCACAAATG 57.127 39.130 5.62 0.00 0.00 2.32
140 141 5.998981 TCAACGGGTAATTAGTGTCACAAAT 59.001 36.000 5.62 0.00 0.00 2.32
141 142 5.366460 TCAACGGGTAATTAGTGTCACAAA 58.634 37.500 5.62 0.00 0.00 2.83
142 143 4.958509 TCAACGGGTAATTAGTGTCACAA 58.041 39.130 5.62 0.00 0.00 3.33
143 144 4.039488 ACTCAACGGGTAATTAGTGTCACA 59.961 41.667 5.62 0.00 0.00 3.58
144 145 4.387862 CACTCAACGGGTAATTAGTGTCAC 59.612 45.833 0.00 0.00 31.82 3.67
145 146 4.561938 CCACTCAACGGGTAATTAGTGTCA 60.562 45.833 0.00 0.00 34.02 3.58
146 147 3.930848 CCACTCAACGGGTAATTAGTGTC 59.069 47.826 0.00 0.00 34.02 3.67
147 148 3.579586 TCCACTCAACGGGTAATTAGTGT 59.420 43.478 0.00 0.00 34.02 3.55
148 149 4.196626 TCCACTCAACGGGTAATTAGTG 57.803 45.455 0.00 0.00 35.29 2.74
149 150 4.895668 TTCCACTCAACGGGTAATTAGT 57.104 40.909 0.00 0.00 0.00 2.24
150 151 6.753107 AATTTCCACTCAACGGGTAATTAG 57.247 37.500 0.00 0.00 33.91 1.73
151 152 6.490721 ACAAATTTCCACTCAACGGGTAATTA 59.509 34.615 0.00 0.00 34.37 1.40
152 153 5.303333 ACAAATTTCCACTCAACGGGTAATT 59.697 36.000 0.00 0.00 36.20 1.40
153 154 4.830600 ACAAATTTCCACTCAACGGGTAAT 59.169 37.500 0.00 0.00 0.00 1.89
154 155 4.208746 ACAAATTTCCACTCAACGGGTAA 58.791 39.130 0.00 0.00 0.00 2.85
155 156 3.822940 ACAAATTTCCACTCAACGGGTA 58.177 40.909 0.00 0.00 0.00 3.69
156 157 2.661718 ACAAATTTCCACTCAACGGGT 58.338 42.857 0.00 0.00 0.00 5.28
157 158 3.726291 AACAAATTTCCACTCAACGGG 57.274 42.857 0.00 0.00 0.00 5.28
158 159 7.527084 TTTTAAACAAATTTCCACTCAACGG 57.473 32.000 0.00 0.00 0.00 4.44
161 162 9.549078 GGGTATTTTAAACAAATTTCCACTCAA 57.451 29.630 0.00 0.00 0.00 3.02
162 163 8.151596 GGGGTATTTTAAACAAATTTCCACTCA 58.848 33.333 0.00 0.00 0.00 3.41
163 164 8.151596 TGGGGTATTTTAAACAAATTTCCACTC 58.848 33.333 0.00 0.00 0.00 3.51
164 165 8.035448 TGGGGTATTTTAAACAAATTTCCACT 57.965 30.769 0.00 0.00 0.00 4.00
165 166 8.856153 ATGGGGTATTTTAAACAAATTTCCAC 57.144 30.769 0.00 0.00 0.00 4.02
166 167 9.868160 AAATGGGGTATTTTAAACAAATTTCCA 57.132 25.926 0.00 0.00 35.47 3.53
172 173 9.713713 GCTTCTAAATGGGGTATTTTAAACAAA 57.286 29.630 0.00 0.00 39.61 2.83
173 174 9.095700 AGCTTCTAAATGGGGTATTTTAAACAA 57.904 29.630 0.00 0.00 39.61 2.83
174 175 8.658840 AGCTTCTAAATGGGGTATTTTAAACA 57.341 30.769 0.00 0.00 39.61 2.83
175 176 9.938280 AAAGCTTCTAAATGGGGTATTTTAAAC 57.062 29.630 0.00 0.00 39.61 2.01
176 177 9.936759 CAAAGCTTCTAAATGGGGTATTTTAAA 57.063 29.630 0.00 0.00 39.61 1.52
177 178 8.536175 CCAAAGCTTCTAAATGGGGTATTTTAA 58.464 33.333 0.00 0.00 39.61 1.52
178 179 7.125053 CCCAAAGCTTCTAAATGGGGTATTTTA 59.875 37.037 21.17 0.00 45.72 1.52
179 180 6.070251 CCCAAAGCTTCTAAATGGGGTATTTT 60.070 38.462 21.17 0.00 45.72 1.82
180 181 5.425217 CCCAAAGCTTCTAAATGGGGTATTT 59.575 40.000 21.17 0.00 45.72 1.40
181 182 4.962362 CCCAAAGCTTCTAAATGGGGTATT 59.038 41.667 21.17 0.00 45.72 1.89
182 183 4.546674 CCCAAAGCTTCTAAATGGGGTAT 58.453 43.478 21.17 0.00 45.72 2.73
183 184 3.976015 CCCAAAGCTTCTAAATGGGGTA 58.024 45.455 21.17 0.00 45.72 3.69
184 185 2.820178 CCCAAAGCTTCTAAATGGGGT 58.180 47.619 21.17 0.00 45.72 4.95
187 188 1.482182 GGGCCCAAAGCTTCTAAATGG 59.518 52.381 19.95 2.87 43.05 3.16
188 189 2.428530 GAGGGCCCAAAGCTTCTAAATG 59.571 50.000 27.56 0.00 43.05 2.32
189 190 2.739943 GAGGGCCCAAAGCTTCTAAAT 58.260 47.619 27.56 0.00 43.05 1.40
190 191 1.613255 CGAGGGCCCAAAGCTTCTAAA 60.613 52.381 27.56 0.00 43.05 1.85
191 192 0.035439 CGAGGGCCCAAAGCTTCTAA 60.035 55.000 27.56 0.00 43.05 2.10
192 193 1.198759 ACGAGGGCCCAAAGCTTCTA 61.199 55.000 27.56 0.00 43.05 2.10
193 194 2.069165 AACGAGGGCCCAAAGCTTCT 62.069 55.000 27.56 0.00 43.05 2.85
194 195 1.179174 AAACGAGGGCCCAAAGCTTC 61.179 55.000 27.56 10.84 43.05 3.86
195 196 0.759060 AAAACGAGGGCCCAAAGCTT 60.759 50.000 27.56 9.31 43.05 3.74
196 197 1.152546 AAAACGAGGGCCCAAAGCT 60.153 52.632 27.56 0.88 43.05 3.74
197 198 1.179174 AGAAAACGAGGGCCCAAAGC 61.179 55.000 27.56 9.34 42.60 3.51
198 199 0.598065 CAGAAAACGAGGGCCCAAAG 59.402 55.000 27.56 17.20 0.00 2.77
199 200 0.183971 TCAGAAAACGAGGGCCCAAA 59.816 50.000 27.56 0.00 0.00 3.28
200 201 0.404040 ATCAGAAAACGAGGGCCCAA 59.596 50.000 27.56 0.00 0.00 4.12
201 202 0.322456 CATCAGAAAACGAGGGCCCA 60.322 55.000 27.56 0.00 0.00 5.36
202 203 1.657751 GCATCAGAAAACGAGGGCCC 61.658 60.000 16.46 16.46 0.00 5.80
203 204 0.960364 TGCATCAGAAAACGAGGGCC 60.960 55.000 0.00 0.00 0.00 5.80
204 205 1.098050 ATGCATCAGAAAACGAGGGC 58.902 50.000 0.00 0.00 0.00 5.19
205 206 2.086869 ACATGCATCAGAAAACGAGGG 58.913 47.619 0.00 0.00 0.00 4.30
206 207 2.096496 GGACATGCATCAGAAAACGAGG 59.904 50.000 0.00 0.00 0.00 4.63
207 208 2.743664 TGGACATGCATCAGAAAACGAG 59.256 45.455 0.00 0.00 0.00 4.18
208 209 2.777094 TGGACATGCATCAGAAAACGA 58.223 42.857 0.00 0.00 0.00 3.85
209 210 3.770263 ATGGACATGCATCAGAAAACG 57.230 42.857 0.00 0.00 0.00 3.60
210 211 5.450965 CCCTAATGGACATGCATCAGAAAAC 60.451 44.000 0.00 0.00 35.39 2.43
211 212 4.646040 CCCTAATGGACATGCATCAGAAAA 59.354 41.667 0.00 0.00 35.39 2.29
212 213 4.079844 TCCCTAATGGACATGCATCAGAAA 60.080 41.667 0.00 0.00 38.61 2.52
213 214 3.459227 TCCCTAATGGACATGCATCAGAA 59.541 43.478 0.00 0.00 38.61 3.02
214 215 3.047857 TCCCTAATGGACATGCATCAGA 58.952 45.455 0.00 0.00 38.61 3.27
215 216 3.497103 TCCCTAATGGACATGCATCAG 57.503 47.619 0.00 0.00 38.61 2.90
216 217 3.435457 CCTTCCCTAATGGACATGCATCA 60.435 47.826 0.00 0.00 45.11 3.07
217 218 3.152341 CCTTCCCTAATGGACATGCATC 58.848 50.000 0.00 0.00 45.11 3.91
218 219 2.515429 ACCTTCCCTAATGGACATGCAT 59.485 45.455 0.00 0.00 45.11 3.96
219 220 1.922447 ACCTTCCCTAATGGACATGCA 59.078 47.619 0.00 0.00 45.11 3.96
220 221 2.301346 CACCTTCCCTAATGGACATGC 58.699 52.381 0.00 0.00 45.11 4.06
221 222 3.054434 TCACACCTTCCCTAATGGACATG 60.054 47.826 0.00 0.00 45.11 3.21
222 223 3.189606 TCACACCTTCCCTAATGGACAT 58.810 45.455 0.00 0.00 45.11 3.06
223 224 2.571653 CTCACACCTTCCCTAATGGACA 59.428 50.000 0.00 0.00 45.11 4.02
224 225 2.092914 CCTCACACCTTCCCTAATGGAC 60.093 54.545 0.00 0.00 45.11 4.02
225 226 2.196595 CCTCACACCTTCCCTAATGGA 58.803 52.381 0.00 0.00 43.18 3.41
226 227 1.916181 ACCTCACACCTTCCCTAATGG 59.084 52.381 0.00 0.00 0.00 3.16
227 228 2.571653 TCACCTCACACCTTCCCTAATG 59.428 50.000 0.00 0.00 0.00 1.90
228 229 2.572104 GTCACCTCACACCTTCCCTAAT 59.428 50.000 0.00 0.00 0.00 1.73
229 230 1.975680 GTCACCTCACACCTTCCCTAA 59.024 52.381 0.00 0.00 0.00 2.69
230 231 1.640917 GTCACCTCACACCTTCCCTA 58.359 55.000 0.00 0.00 0.00 3.53
231 232 1.472662 CGTCACCTCACACCTTCCCT 61.473 60.000 0.00 0.00 0.00 4.20
232 233 1.004918 CGTCACCTCACACCTTCCC 60.005 63.158 0.00 0.00 0.00 3.97
233 234 1.668151 GCGTCACCTCACACCTTCC 60.668 63.158 0.00 0.00 0.00 3.46
234 235 1.668151 GGCGTCACCTCACACCTTC 60.668 63.158 0.00 0.00 34.51 3.46
235 236 2.426023 GGCGTCACCTCACACCTT 59.574 61.111 0.00 0.00 34.51 3.50
244 245 2.969300 TTTGAACCCCAGGCGTCACC 62.969 60.000 0.00 0.00 39.61 4.02
245 246 1.104577 TTTTGAACCCCAGGCGTCAC 61.105 55.000 0.00 0.00 0.00 3.67
246 247 0.395862 TTTTTGAACCCCAGGCGTCA 60.396 50.000 0.00 0.00 0.00 4.35
247 248 0.966179 ATTTTTGAACCCCAGGCGTC 59.034 50.000 0.00 0.00 0.00 5.19
248 249 2.296073 TATTTTTGAACCCCAGGCGT 57.704 45.000 0.00 0.00 0.00 5.68
249 250 3.023832 AGATATTTTTGAACCCCAGGCG 58.976 45.455 0.00 0.00 0.00 5.52
250 251 3.132824 CCAGATATTTTTGAACCCCAGGC 59.867 47.826 0.00 0.00 0.00 4.85
251 252 4.402474 GTCCAGATATTTTTGAACCCCAGG 59.598 45.833 0.00 0.00 0.00 4.45
252 253 4.096382 CGTCCAGATATTTTTGAACCCCAG 59.904 45.833 0.00 0.00 0.00 4.45
253 254 4.013728 CGTCCAGATATTTTTGAACCCCA 58.986 43.478 0.00 0.00 0.00 4.96
254 255 4.266714 TCGTCCAGATATTTTTGAACCCC 58.733 43.478 0.00 0.00 0.00 4.95
255 256 5.221048 CCATCGTCCAGATATTTTTGAACCC 60.221 44.000 0.00 0.00 37.52 4.11
256 257 5.221048 CCCATCGTCCAGATATTTTTGAACC 60.221 44.000 0.00 0.00 37.52 3.62
257 258 5.221048 CCCCATCGTCCAGATATTTTTGAAC 60.221 44.000 0.00 0.00 37.52 3.18
258 259 4.887071 CCCCATCGTCCAGATATTTTTGAA 59.113 41.667 0.00 0.00 37.52 2.69
259 260 4.165180 TCCCCATCGTCCAGATATTTTTGA 59.835 41.667 0.00 0.00 37.52 2.69
260 261 4.460263 TCCCCATCGTCCAGATATTTTTG 58.540 43.478 0.00 0.00 37.52 2.44
261 262 4.446311 CCTCCCCATCGTCCAGATATTTTT 60.446 45.833 0.00 0.00 37.52 1.94
262 263 3.073062 CCTCCCCATCGTCCAGATATTTT 59.927 47.826 0.00 0.00 37.52 1.82
263 264 2.639839 CCTCCCCATCGTCCAGATATTT 59.360 50.000 0.00 0.00 37.52 1.40
264 265 2.158158 TCCTCCCCATCGTCCAGATATT 60.158 50.000 0.00 0.00 37.52 1.28
265 266 1.433199 TCCTCCCCATCGTCCAGATAT 59.567 52.381 0.00 0.00 37.52 1.63
266 267 0.857675 TCCTCCCCATCGTCCAGATA 59.142 55.000 0.00 0.00 37.52 1.98
267 268 0.031111 TTCCTCCCCATCGTCCAGAT 60.031 55.000 0.00 0.00 41.01 2.90
268 269 0.031111 ATTCCTCCCCATCGTCCAGA 60.031 55.000 0.00 0.00 0.00 3.86
269 270 0.107456 CATTCCTCCCCATCGTCCAG 59.893 60.000 0.00 0.00 0.00 3.86
270 271 1.344953 CCATTCCTCCCCATCGTCCA 61.345 60.000 0.00 0.00 0.00 4.02
271 272 1.054406 TCCATTCCTCCCCATCGTCC 61.054 60.000 0.00 0.00 0.00 4.79
272 273 0.837272 TTCCATTCCTCCCCATCGTC 59.163 55.000 0.00 0.00 0.00 4.20
273 274 0.546598 GTTCCATTCCTCCCCATCGT 59.453 55.000 0.00 0.00 0.00 3.73
274 275 0.546122 TGTTCCATTCCTCCCCATCG 59.454 55.000 0.00 0.00 0.00 3.84
275 276 1.846439 TCTGTTCCATTCCTCCCCATC 59.154 52.381 0.00 0.00 0.00 3.51
276 277 1.985622 TCTGTTCCATTCCTCCCCAT 58.014 50.000 0.00 0.00 0.00 4.00
277 278 1.565759 CATCTGTTCCATTCCTCCCCA 59.434 52.381 0.00 0.00 0.00 4.96
278 279 1.133668 CCATCTGTTCCATTCCTCCCC 60.134 57.143 0.00 0.00 0.00 4.81
279 280 1.846439 TCCATCTGTTCCATTCCTCCC 59.154 52.381 0.00 0.00 0.00 4.30
280 281 2.239654 TGTCCATCTGTTCCATTCCTCC 59.760 50.000 0.00 0.00 0.00 4.30
281 282 3.634397 TGTCCATCTGTTCCATTCCTC 57.366 47.619 0.00 0.00 0.00 3.71
282 283 4.387026 TTTGTCCATCTGTTCCATTCCT 57.613 40.909 0.00 0.00 0.00 3.36
283 284 4.766891 TCTTTTGTCCATCTGTTCCATTCC 59.233 41.667 0.00 0.00 0.00 3.01
284 285 5.964958 TCTTTTGTCCATCTGTTCCATTC 57.035 39.130 0.00 0.00 0.00 2.67
285 286 5.835280 ACTTCTTTTGTCCATCTGTTCCATT 59.165 36.000 0.00 0.00 0.00 3.16
286 287 5.388654 ACTTCTTTTGTCCATCTGTTCCAT 58.611 37.500 0.00 0.00 0.00 3.41
287 288 4.792068 ACTTCTTTTGTCCATCTGTTCCA 58.208 39.130 0.00 0.00 0.00 3.53
288 289 5.049129 CAGACTTCTTTTGTCCATCTGTTCC 60.049 44.000 0.00 0.00 35.21 3.62
289 290 5.049129 CCAGACTTCTTTTGTCCATCTGTTC 60.049 44.000 0.00 0.00 35.21 3.18
290 291 4.823989 CCAGACTTCTTTTGTCCATCTGTT 59.176 41.667 0.00 0.00 35.21 3.16
291 292 4.103153 TCCAGACTTCTTTTGTCCATCTGT 59.897 41.667 0.00 0.00 35.21 3.41
292 293 4.453819 GTCCAGACTTCTTTTGTCCATCTG 59.546 45.833 0.00 0.00 35.21 2.90
293 294 4.103153 TGTCCAGACTTCTTTTGTCCATCT 59.897 41.667 0.00 0.00 35.21 2.90
294 295 4.389374 TGTCCAGACTTCTTTTGTCCATC 58.611 43.478 0.00 0.00 35.21 3.51
295 296 4.437682 TGTCCAGACTTCTTTTGTCCAT 57.562 40.909 0.00 0.00 35.21 3.41
296 297 3.924114 TGTCCAGACTTCTTTTGTCCA 57.076 42.857 0.00 0.00 35.21 4.02
297 298 4.389374 TCATGTCCAGACTTCTTTTGTCC 58.611 43.478 0.00 0.00 35.21 4.02
298 299 6.016777 ACAATCATGTCCAGACTTCTTTTGTC 60.017 38.462 0.00 0.00 33.41 3.18
299 300 5.829924 ACAATCATGTCCAGACTTCTTTTGT 59.170 36.000 0.00 1.32 33.41 2.83
300 301 6.323203 ACAATCATGTCCAGACTTCTTTTG 57.677 37.500 0.00 0.79 33.41 2.44
314 315 1.745087 GGGCGTCATTGACAATCATGT 59.255 47.619 16.61 0.00 44.25 3.21
315 316 2.019249 AGGGCGTCATTGACAATCATG 58.981 47.619 16.61 0.00 32.09 3.07
316 317 2.425143 AGGGCGTCATTGACAATCAT 57.575 45.000 16.61 0.73 32.09 2.45
317 318 2.083774 GAAGGGCGTCATTGACAATCA 58.916 47.619 16.61 0.00 32.09 2.57
318 319 1.062587 CGAAGGGCGTCATTGACAATC 59.937 52.381 16.61 5.13 34.64 2.67
319 320 1.086696 CGAAGGGCGTCATTGACAAT 58.913 50.000 16.61 0.00 34.64 2.71
320 321 0.034198 TCGAAGGGCGTCATTGACAA 59.966 50.000 16.61 0.00 41.80 3.18
321 322 0.249120 ATCGAAGGGCGTCATTGACA 59.751 50.000 16.61 0.00 41.80 3.58
322 323 0.931005 GATCGAAGGGCGTCATTGAC 59.069 55.000 6.73 6.73 41.80 3.18
323 324 0.824109 AGATCGAAGGGCGTCATTGA 59.176 50.000 0.00 0.00 41.80 2.57
324 325 1.656652 AAGATCGAAGGGCGTCATTG 58.343 50.000 0.00 0.00 41.80 2.82
325 326 2.403252 AAAGATCGAAGGGCGTCATT 57.597 45.000 0.00 0.00 41.80 2.57
326 327 2.167693 TGTAAAGATCGAAGGGCGTCAT 59.832 45.455 0.00 0.00 41.80 3.06
327 328 1.546923 TGTAAAGATCGAAGGGCGTCA 59.453 47.619 0.00 0.00 41.80 4.35
328 329 1.925185 GTGTAAAGATCGAAGGGCGTC 59.075 52.381 0.00 0.00 41.80 5.19
329 330 1.274167 TGTGTAAAGATCGAAGGGCGT 59.726 47.619 0.00 0.00 41.80 5.68
330 331 2.004583 TGTGTAAAGATCGAAGGGCG 57.995 50.000 0.00 0.00 42.69 6.13
331 332 4.192317 AGAATGTGTAAAGATCGAAGGGC 58.808 43.478 0.00 0.00 0.00 5.19
332 333 6.743575 AAAGAATGTGTAAAGATCGAAGGG 57.256 37.500 0.00 0.00 0.00 3.95
333 334 7.898309 CGTAAAAGAATGTGTAAAGATCGAAGG 59.102 37.037 0.00 0.00 0.00 3.46
334 335 8.644619 TCGTAAAAGAATGTGTAAAGATCGAAG 58.355 33.333 0.00 0.00 0.00 3.79
335 336 8.523523 TCGTAAAAGAATGTGTAAAGATCGAA 57.476 30.769 0.00 0.00 0.00 3.71
336 337 8.523523 TTCGTAAAAGAATGTGTAAAGATCGA 57.476 30.769 0.00 0.00 0.00 3.59
337 338 9.409949 GATTCGTAAAAGAATGTGTAAAGATCG 57.590 33.333 0.00 0.00 40.58 3.69
343 344 9.820229 GTCAATGATTCGTAAAAGAATGTGTAA 57.180 29.630 0.00 0.00 40.58 2.41
344 345 8.166066 CGTCAATGATTCGTAAAAGAATGTGTA 58.834 33.333 0.00 0.00 40.58 2.90
345 346 7.015289 CGTCAATGATTCGTAAAAGAATGTGT 58.985 34.615 0.00 0.00 40.58 3.72
346 347 6.022251 GCGTCAATGATTCGTAAAAGAATGTG 60.022 38.462 0.00 0.00 40.58 3.21
347 348 6.021596 GCGTCAATGATTCGTAAAAGAATGT 58.978 36.000 0.00 0.00 40.58 2.71
348 349 6.020984 TGCGTCAATGATTCGTAAAAGAATG 58.979 36.000 0.00 0.00 40.58 2.67
349 350 6.176975 TGCGTCAATGATTCGTAAAAGAAT 57.823 33.333 0.00 0.00 42.92 2.40
350 351 5.599359 TGCGTCAATGATTCGTAAAAGAA 57.401 34.783 0.00 0.00 34.31 2.52
351 352 5.050023 TGTTGCGTCAATGATTCGTAAAAGA 60.050 36.000 0.00 0.00 32.13 2.52
352 353 5.143660 TGTTGCGTCAATGATTCGTAAAAG 58.856 37.500 0.00 0.00 32.13 2.27
353 354 5.096954 TGTTGCGTCAATGATTCGTAAAA 57.903 34.783 0.00 0.00 32.13 1.52
354 355 4.733972 TGTTGCGTCAATGATTCGTAAA 57.266 36.364 0.00 0.00 32.13 2.01
355 356 4.646960 CATGTTGCGTCAATGATTCGTAA 58.353 39.130 0.00 0.00 0.00 3.18
356 357 3.485051 GCATGTTGCGTCAATGATTCGTA 60.485 43.478 0.00 0.00 31.71 3.43
357 358 2.728846 GCATGTTGCGTCAATGATTCGT 60.729 45.455 0.00 0.00 31.71 3.85
358 359 1.841944 GCATGTTGCGTCAATGATTCG 59.158 47.619 0.00 0.00 31.71 3.34
370 371 2.338577 AGATAGGGTCTGCATGTTGC 57.661 50.000 0.00 0.00 45.29 4.17
371 372 4.769688 TGTTAGATAGGGTCTGCATGTTG 58.230 43.478 0.00 0.00 37.83 3.33
372 373 5.636903 ATGTTAGATAGGGTCTGCATGTT 57.363 39.130 0.00 0.00 37.83 2.71
373 374 6.747414 TTATGTTAGATAGGGTCTGCATGT 57.253 37.500 0.00 0.00 37.83 3.21
374 375 9.725019 TTATTTATGTTAGATAGGGTCTGCATG 57.275 33.333 0.00 0.00 37.83 4.06
375 376 9.950496 CTTATTTATGTTAGATAGGGTCTGCAT 57.050 33.333 0.00 0.00 37.83 3.96
376 377 9.154632 TCTTATTTATGTTAGATAGGGTCTGCA 57.845 33.333 0.00 0.00 37.83 4.41
377 378 9.998106 TTCTTATTTATGTTAGATAGGGTCTGC 57.002 33.333 0.00 0.00 37.83 4.26
402 403 9.594478 ACGGTTTTACTCTGATTTTTGATTTTT 57.406 25.926 0.00 0.00 0.00 1.94
403 404 9.030301 CACGGTTTTACTCTGATTTTTGATTTT 57.970 29.630 0.00 0.00 0.00 1.82
404 405 7.651704 CCACGGTTTTACTCTGATTTTTGATTT 59.348 33.333 0.00 0.00 0.00 2.17
405 406 7.145323 CCACGGTTTTACTCTGATTTTTGATT 58.855 34.615 0.00 0.00 0.00 2.57
406 407 6.677913 CCACGGTTTTACTCTGATTTTTGAT 58.322 36.000 0.00 0.00 0.00 2.57
407 408 5.506649 GCCACGGTTTTACTCTGATTTTTGA 60.507 40.000 0.00 0.00 0.00 2.69
408 409 4.679654 GCCACGGTTTTACTCTGATTTTTG 59.320 41.667 0.00 0.00 0.00 2.44
409 410 4.339814 TGCCACGGTTTTACTCTGATTTTT 59.660 37.500 0.00 0.00 0.00 1.94
410 411 3.886505 TGCCACGGTTTTACTCTGATTTT 59.113 39.130 0.00 0.00 0.00 1.82
411 412 3.482436 TGCCACGGTTTTACTCTGATTT 58.518 40.909 0.00 0.00 0.00 2.17
412 413 3.074412 CTGCCACGGTTTTACTCTGATT 58.926 45.455 0.00 0.00 0.00 2.57
413 414 2.301870 TCTGCCACGGTTTTACTCTGAT 59.698 45.455 0.00 0.00 0.00 2.90
414 415 1.689813 TCTGCCACGGTTTTACTCTGA 59.310 47.619 0.00 0.00 0.00 3.27
415 416 2.163818 TCTGCCACGGTTTTACTCTG 57.836 50.000 0.00 0.00 0.00 3.35
416 417 2.104281 ACTTCTGCCACGGTTTTACTCT 59.896 45.455 0.00 0.00 0.00 3.24
417 418 2.479275 GACTTCTGCCACGGTTTTACTC 59.521 50.000 0.00 0.00 0.00 2.59
418 419 2.104281 AGACTTCTGCCACGGTTTTACT 59.896 45.455 0.00 0.00 0.00 2.24
419 420 2.490991 AGACTTCTGCCACGGTTTTAC 58.509 47.619 0.00 0.00 0.00 2.01
420 421 2.922740 AGACTTCTGCCACGGTTTTA 57.077 45.000 0.00 0.00 0.00 1.52
421 422 1.947456 GAAGACTTCTGCCACGGTTTT 59.053 47.619 8.00 0.00 0.00 2.43
422 423 1.134220 TGAAGACTTCTGCCACGGTTT 60.134 47.619 16.02 0.00 0.00 3.27
423 424 0.468226 TGAAGACTTCTGCCACGGTT 59.532 50.000 16.02 0.00 0.00 4.44
424 425 0.468226 TTGAAGACTTCTGCCACGGT 59.532 50.000 16.02 0.00 0.00 4.83
425 426 1.593196 TTTGAAGACTTCTGCCACGG 58.407 50.000 16.02 0.00 0.00 4.94
426 427 3.003689 ACATTTTGAAGACTTCTGCCACG 59.996 43.478 16.02 3.73 0.00 4.94
427 428 4.036734 TCACATTTTGAAGACTTCTGCCAC 59.963 41.667 16.02 0.00 0.00 5.01
428 429 4.206375 TCACATTTTGAAGACTTCTGCCA 58.794 39.130 16.02 0.00 0.00 4.92
429 430 4.836125 TCACATTTTGAAGACTTCTGCC 57.164 40.909 16.02 0.00 0.00 4.85
430 431 8.976986 AAATATCACATTTTGAAGACTTCTGC 57.023 30.769 16.02 0.00 37.92 4.26
466 467 9.679661 CACATATATATTACCCCATTTAGTGCA 57.320 33.333 0.00 0.00 0.00 4.57
467 468 9.681062 ACACATATATATTACCCCATTTAGTGC 57.319 33.333 0.00 0.00 0.00 4.40
475 476 9.513906 CATTTGTGACACATATATATTACCCCA 57.486 33.333 9.55 0.00 0.00 4.96
476 477 9.515226 ACATTTGTGACACATATATATTACCCC 57.485 33.333 9.55 0.00 0.00 4.95
485 486 9.930693 TGTAGTTGTACATTTGTGACACATATA 57.069 29.630 9.55 0.00 34.02 0.86
486 487 8.840833 TGTAGTTGTACATTTGTGACACATAT 57.159 30.769 9.55 7.43 34.02 1.78
487 488 8.716909 CATGTAGTTGTACATTTGTGACACATA 58.283 33.333 9.55 5.01 45.99 2.29
488 489 7.308529 CCATGTAGTTGTACATTTGTGACACAT 60.309 37.037 9.55 0.00 45.99 3.21
489 490 6.017523 CCATGTAGTTGTACATTTGTGACACA 60.018 38.462 3.56 3.56 45.99 3.72
490 491 6.017440 ACCATGTAGTTGTACATTTGTGACAC 60.017 38.462 0.00 0.00 45.99 3.67
491 492 6.058833 ACCATGTAGTTGTACATTTGTGACA 58.941 36.000 0.00 0.00 45.99 3.58
492 493 6.554334 ACCATGTAGTTGTACATTTGTGAC 57.446 37.500 0.00 0.00 45.99 3.67
493 494 8.151596 TCTTACCATGTAGTTGTACATTTGTGA 58.848 33.333 0.00 0.00 45.99 3.58
494 495 8.317891 TCTTACCATGTAGTTGTACATTTGTG 57.682 34.615 0.00 0.00 45.99 3.33
495 496 8.911918 TTCTTACCATGTAGTTGTACATTTGT 57.088 30.769 0.00 0.48 45.99 2.83
496 497 8.999431 ACTTCTTACCATGTAGTTGTACATTTG 58.001 33.333 0.00 0.00 45.99 2.32
497 498 8.999431 CACTTCTTACCATGTAGTTGTACATTT 58.001 33.333 0.00 0.00 45.99 2.32
498 499 7.606456 CCACTTCTTACCATGTAGTTGTACATT 59.394 37.037 0.00 0.00 45.99 2.71
500 501 6.268158 TCCACTTCTTACCATGTAGTTGTACA 59.732 38.462 0.00 0.00 43.43 2.90
501 502 6.694447 TCCACTTCTTACCATGTAGTTGTAC 58.306 40.000 0.00 0.00 0.00 2.90
502 503 6.921486 TCCACTTCTTACCATGTAGTTGTA 57.079 37.500 0.00 0.00 0.00 2.41
503 504 5.818678 TCCACTTCTTACCATGTAGTTGT 57.181 39.130 0.00 0.00 0.00 3.32
504 505 7.390440 TGAATTCCACTTCTTACCATGTAGTTG 59.610 37.037 2.27 0.00 0.00 3.16
505 506 7.390718 GTGAATTCCACTTCTTACCATGTAGTT 59.609 37.037 2.27 0.00 42.44 2.24
506 507 6.879458 GTGAATTCCACTTCTTACCATGTAGT 59.121 38.462 2.27 0.00 42.44 2.73
507 508 7.308782 GTGAATTCCACTTCTTACCATGTAG 57.691 40.000 2.27 0.00 42.44 2.74
527 528 9.536558 CACGACGATTTTAATTTTATGAGTGAA 57.463 29.630 0.00 0.00 0.00 3.18
528 529 8.172484 CCACGACGATTTTAATTTTATGAGTGA 58.828 33.333 0.00 0.00 0.00 3.41
529 530 7.044966 GCCACGACGATTTTAATTTTATGAGTG 60.045 37.037 0.00 0.00 0.00 3.51
530 531 6.964934 GCCACGACGATTTTAATTTTATGAGT 59.035 34.615 0.00 0.00 0.00 3.41
531 532 6.964370 TGCCACGACGATTTTAATTTTATGAG 59.036 34.615 0.00 0.00 0.00 2.90
532 533 6.743627 GTGCCACGACGATTTTAATTTTATGA 59.256 34.615 0.00 0.00 0.00 2.15
533 534 6.524933 TGTGCCACGACGATTTTAATTTTATG 59.475 34.615 0.00 0.00 0.00 1.90
534 535 6.613233 TGTGCCACGACGATTTTAATTTTAT 58.387 32.000 0.00 0.00 0.00 1.40
535 536 5.998553 TGTGCCACGACGATTTTAATTTTA 58.001 33.333 0.00 0.00 0.00 1.52
536 537 4.861210 TGTGCCACGACGATTTTAATTTT 58.139 34.783 0.00 0.00 0.00 1.82
537 538 4.491234 TGTGCCACGACGATTTTAATTT 57.509 36.364 0.00 0.00 0.00 1.82
538 539 4.411327 CATGTGCCACGACGATTTTAATT 58.589 39.130 0.00 0.00 0.00 1.40
539 540 3.181501 CCATGTGCCACGACGATTTTAAT 60.182 43.478 0.00 0.00 0.00 1.40
540 541 2.160615 CCATGTGCCACGACGATTTTAA 59.839 45.455 0.00 0.00 0.00 1.52
541 542 1.735018 CCATGTGCCACGACGATTTTA 59.265 47.619 0.00 0.00 0.00 1.52
542 543 0.521291 CCATGTGCCACGACGATTTT 59.479 50.000 0.00 0.00 0.00 1.82
543 544 1.922135 GCCATGTGCCACGACGATTT 61.922 55.000 0.00 0.00 0.00 2.17
544 545 2.398554 GCCATGTGCCACGACGATT 61.399 57.895 0.00 0.00 0.00 3.34
545 546 2.819595 GCCATGTGCCACGACGAT 60.820 61.111 0.00 0.00 0.00 3.73
554 555 1.604604 AATATACGTGGGCCATGTGC 58.395 50.000 35.84 11.67 35.12 4.57
555 556 4.265904 TCTAATATACGTGGGCCATGTG 57.734 45.455 35.84 20.72 35.12 3.21
556 557 6.808321 ATATCTAATATACGTGGGCCATGT 57.192 37.500 32.31 32.31 37.38 3.21
557 558 8.638873 TCTTATATCTAATATACGTGGGCCATG 58.361 37.037 24.09 24.09 0.00 3.66
558 559 8.777578 TCTTATATCTAATATACGTGGGCCAT 57.222 34.615 10.70 0.00 0.00 4.40
559 560 8.598202 TTCTTATATCTAATATACGTGGGCCA 57.402 34.615 0.00 0.00 0.00 5.36
560 561 9.880157 TTTTCTTATATCTAATATACGTGGGCC 57.120 33.333 0.00 0.00 0.00 5.80
578 579 9.911788 AAGATGTGTCATACCATCTTTTCTTAT 57.088 29.630 10.07 0.00 40.29 1.73
579 580 9.739276 AAAGATGTGTCATACCATCTTTTCTTA 57.261 29.630 17.78 0.00 46.16 2.10
580 581 8.517878 CAAAGATGTGTCATACCATCTTTTCTT 58.482 33.333 19.67 4.80 46.16 2.52
581 582 7.667219 ACAAAGATGTGTCATACCATCTTTTCT 59.333 33.333 19.67 10.44 46.16 2.52
582 583 7.820648 ACAAAGATGTGTCATACCATCTTTTC 58.179 34.615 19.67 0.00 46.16 2.29
583 584 7.765695 ACAAAGATGTGTCATACCATCTTTT 57.234 32.000 19.67 12.48 46.16 2.27
593 594 7.222872 AGAGAAGAAGAACAAAGATGTGTCAT 58.777 34.615 0.00 0.00 40.46 3.06
594 595 6.586344 AGAGAAGAAGAACAAAGATGTGTCA 58.414 36.000 0.00 0.00 40.46 3.58
637 638 2.612212 AGAAAACTACAACAGCACACGG 59.388 45.455 0.00 0.00 0.00 4.94
639 640 4.142469 ACCAAGAAAACTACAACAGCACAC 60.142 41.667 0.00 0.00 0.00 3.82
640 641 4.013728 ACCAAGAAAACTACAACAGCACA 58.986 39.130 0.00 0.00 0.00 4.57
643 644 5.500645 AGAACCAAGAAAACTACAACAGC 57.499 39.130 0.00 0.00 0.00 4.40
659 690 1.341852 TCGATTGTTGGACGAGAACCA 59.658 47.619 0.00 0.00 35.47 3.67
660 691 2.074547 TCGATTGTTGGACGAGAACC 57.925 50.000 0.00 0.00 0.00 3.62
664 695 3.150848 TCAGATCGATTGTTGGACGAG 57.849 47.619 0.00 0.00 39.31 4.18
667 698 2.797156 CGGATCAGATCGATTGTTGGAC 59.203 50.000 0.00 0.00 33.17 4.02
668 699 2.224042 CCGGATCAGATCGATTGTTGGA 60.224 50.000 0.00 0.00 33.17 3.53
669 700 2.138320 CCGGATCAGATCGATTGTTGG 58.862 52.381 0.00 0.00 33.17 3.77
670 701 1.528586 GCCGGATCAGATCGATTGTTG 59.471 52.381 5.05 0.00 33.17 3.33
671 702 1.541233 GGCCGGATCAGATCGATTGTT 60.541 52.381 5.05 0.00 33.17 2.83
672 703 0.034059 GGCCGGATCAGATCGATTGT 59.966 55.000 5.05 0.00 33.17 2.71
673 704 0.319728 AGGCCGGATCAGATCGATTG 59.680 55.000 5.05 0.15 33.17 2.67
674 705 1.051812 AAGGCCGGATCAGATCGATT 58.948 50.000 5.05 0.00 33.17 3.34
675 706 0.319728 CAAGGCCGGATCAGATCGAT 59.680 55.000 5.05 0.00 36.91 3.59
676 707 1.742146 CAAGGCCGGATCAGATCGA 59.258 57.895 5.05 0.00 0.00 3.59
677 708 1.301244 CCAAGGCCGGATCAGATCG 60.301 63.158 5.05 0.41 0.00 3.69
678 709 1.048601 TACCAAGGCCGGATCAGATC 58.951 55.000 5.05 1.18 0.00 2.75
679 710 0.759346 GTACCAAGGCCGGATCAGAT 59.241 55.000 5.05 0.00 0.00 2.90
680 711 1.335132 GGTACCAAGGCCGGATCAGA 61.335 60.000 5.05 0.00 0.00 3.27
681 712 1.146263 GGTACCAAGGCCGGATCAG 59.854 63.158 5.05 0.00 0.00 2.90
682 713 0.986019 ATGGTACCAAGGCCGGATCA 60.986 55.000 20.76 0.00 0.00 2.92
683 714 0.250338 GATGGTACCAAGGCCGGATC 60.250 60.000 20.76 5.32 0.00 3.36
714 745 1.757306 CTTGTCCAGTGTCCAGGCT 59.243 57.895 0.00 0.00 0.00 4.58
759 795 4.321230 GGCCCTAAAATGTTCAAGACTGTG 60.321 45.833 0.00 0.00 0.00 3.66
760 796 3.826729 GGCCCTAAAATGTTCAAGACTGT 59.173 43.478 0.00 0.00 0.00 3.55
790 829 1.483595 CCTGACCTGAGTTCCCTGCA 61.484 60.000 0.00 0.00 0.00 4.41
834 879 4.285851 GCGGCAGCCATATCCTAC 57.714 61.111 13.30 0.00 37.42 3.18
926 1008 2.877691 GTTGGAATGGCGGAGTGC 59.122 61.111 0.00 0.00 45.38 4.40
975 1057 2.224018 CCTACTCGTACTCCTAGAGCGT 60.224 54.545 0.00 0.00 35.56 5.07
989 1071 1.443407 CAGGCCATCCACCTACTCG 59.557 63.158 5.01 0.00 35.10 4.18
992 1074 2.193248 GGCAGGCCATCCACCTAC 59.807 66.667 5.01 0.00 35.10 3.18
993 1075 3.479203 CGGCAGGCCATCCACCTA 61.479 66.667 5.01 0.00 35.10 3.08
1023 1122 4.736896 GTGGCCTCCACGTCGTCC 62.737 72.222 3.32 0.00 44.95 4.79
1137 1242 2.125912 GTGACGACGATGCTGGCT 60.126 61.111 0.00 0.00 0.00 4.75
1245 1350 1.640069 GATCCGATCGACGTCGTCA 59.360 57.895 34.40 19.34 39.89 4.35
1464 1569 2.046892 GCATGGTGCTCCGTCTGT 60.047 61.111 0.00 0.00 40.96 3.41
1567 1672 3.727258 CATGAACCCAGGGGCCGA 61.727 66.667 11.37 0.00 39.32 5.54
1758 1863 1.669115 CTCGTGCTGGTGGAACAGG 60.669 63.158 0.00 0.00 41.80 4.00
2083 2188 1.375908 GGATCAGCTGTTGCGGTGA 60.376 57.895 14.67 0.00 44.44 4.02
2265 2370 1.059913 CCTCCTTCAACCACTCCACT 58.940 55.000 0.00 0.00 0.00 4.00
2349 2454 2.060383 CACCGCCTCATCTCCTCCA 61.060 63.158 0.00 0.00 0.00 3.86
2427 2532 0.679640 GGTTGATGAATGCCGACCCA 60.680 55.000 0.00 0.00 31.97 4.51
2430 2535 0.099436 GCAGGTTGATGAATGCCGAC 59.901 55.000 0.00 0.00 32.49 4.79
2516 2621 5.168569 GGCAAAAACTTGATAAACCCTAGC 58.831 41.667 0.00 0.00 0.00 3.42
2728 3308 3.425162 AAAGGACACATGAGGAGGAAC 57.575 47.619 0.00 0.00 0.00 3.62
2754 3334 6.605594 GTGAGGAGGAAATCTTCTCTCTCTAA 59.394 42.308 3.35 0.00 46.23 2.10
2755 3335 6.126409 GTGAGGAGGAAATCTTCTCTCTCTA 58.874 44.000 3.35 0.00 46.23 2.43
2756 3336 4.956075 GTGAGGAGGAAATCTTCTCTCTCT 59.044 45.833 3.35 0.00 46.23 3.10
2757 3337 4.709397 TGTGAGGAGGAAATCTTCTCTCTC 59.291 45.833 3.35 0.00 46.23 3.20
2758 3338 4.682563 TGTGAGGAGGAAATCTTCTCTCT 58.317 43.478 3.35 0.00 46.23 3.10
2770 3350 3.433882 GCTAGCTACTACTGTGAGGAGGA 60.434 52.174 7.70 0.00 0.00 3.71
2773 3353 3.546724 CTGCTAGCTACTACTGTGAGGA 58.453 50.000 17.23 0.00 0.00 3.71
2775 3355 2.685388 TGCTGCTAGCTACTACTGTGAG 59.315 50.000 17.23 1.50 42.97 3.51
2776 3356 2.685388 CTGCTGCTAGCTACTACTGTGA 59.315 50.000 17.23 0.00 42.97 3.58
2777 3357 2.797792 GCTGCTGCTAGCTACTACTGTG 60.798 54.545 17.23 0.00 42.97 3.66
2779 3359 2.132740 GCTGCTGCTAGCTACTACTG 57.867 55.000 17.23 6.01 42.97 2.74
2890 3830 0.298707 GTGCGTGTGTGATGCTATCG 59.701 55.000 0.00 0.00 37.49 2.92
2997 3937 6.770785 ACTTCAGATCCAGAGTATGAGTCTAC 59.229 42.308 0.00 0.00 0.00 2.59
3124 4091 1.404391 ACTTTCGCGACGATATCACCT 59.596 47.619 9.15 0.00 35.23 4.00
3292 4499 3.547746 TGCTTCTCATCATGCTTGCATA 58.452 40.909 7.84 0.00 0.00 3.14
3318 4527 3.332187 TGATTGGTAGTTTGGGTCATGGA 59.668 43.478 0.00 0.00 0.00 3.41
3321 4530 4.217550 CGTTTGATTGGTAGTTTGGGTCAT 59.782 41.667 0.00 0.00 0.00 3.06
3422 4635 3.557228 AGTCAGATCCAGAATTCTGCC 57.443 47.619 27.01 17.93 42.47 4.85
3434 4650 4.567159 CCTTACGTAAGCCAAAGTCAGATC 59.433 45.833 26.57 0.00 45.62 2.75
3435 4651 4.504858 CCTTACGTAAGCCAAAGTCAGAT 58.495 43.478 26.57 0.00 45.62 2.90
3436 4652 3.306502 CCCTTACGTAAGCCAAAGTCAGA 60.307 47.826 26.57 0.00 45.62 3.27
3437 4653 3.000727 CCCTTACGTAAGCCAAAGTCAG 58.999 50.000 26.57 11.54 45.62 3.51
3438 4654 2.872842 GCCCTTACGTAAGCCAAAGTCA 60.873 50.000 26.57 0.00 45.62 3.41
3439 4655 1.736126 GCCCTTACGTAAGCCAAAGTC 59.264 52.381 26.57 2.16 45.62 3.01
3440 4656 1.612462 GGCCCTTACGTAAGCCAAAGT 60.612 52.381 26.57 0.00 45.07 2.66
3441 4657 1.092348 GGCCCTTACGTAAGCCAAAG 58.908 55.000 26.57 14.11 45.07 2.77
3442 4658 3.252979 GGCCCTTACGTAAGCCAAA 57.747 52.632 26.57 0.00 45.07 3.28
3454 4670 1.464198 AGTTCTGGTCCTGGCCCTT 60.464 57.895 0.00 0.00 0.00 3.95
3468 4684 2.862536 GACCCTATTTTACGCCGAGTTC 59.137 50.000 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.