Multiple sequence alignment - TraesCS4D01G011400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G011400 chr4D 100.000 3446 0 0 1 3446 5565798 5569243 0.000000e+00 6364.0
1 TraesCS4D01G011400 chr4D 82.734 139 19 4 1056 1192 5566610 5566745 6.040000e-23 119.0
2 TraesCS4D01G011400 chr4D 82.734 139 19 4 813 948 5566853 5566989 6.040000e-23 119.0
3 TraesCS4D01G011400 chr4D 100.000 33 0 0 3230 3262 5568987 5568955 1.030000e-05 62.1
4 TraesCS4D01G011400 chr4D 100.000 33 0 0 3158 3190 5569059 5569027 1.030000e-05 62.1
5 TraesCS4D01G011400 chr4B 89.915 2340 171 43 641 2935 9690581 9692900 0.000000e+00 2953.0
6 TraesCS4D01G011400 chr4B 81.818 165 16 10 791 948 9690992 9691149 3.610000e-25 126.0
7 TraesCS4D01G011400 chr4B 76.923 247 37 15 3095 3322 9692898 9693143 4.670000e-24 122.0
8 TraesCS4D01G011400 chr4B 82.787 122 17 2 2674 2795 9700198 9700315 4.700000e-19 106.0
9 TraesCS4D01G011400 chr4B 91.071 56 5 0 393 448 395743405 395743350 3.690000e-10 76.8
10 TraesCS4D01G011400 chr4B 91.071 56 5 0 393 448 395745389 395745334 3.690000e-10 76.8
11 TraesCS4D01G011400 chr4A 93.962 1209 65 5 1665 2865 598045865 598044657 0.000000e+00 1821.0
12 TraesCS4D01G011400 chr4A 90.867 865 60 10 2337 3192 597974971 597974117 0.000000e+00 1142.0
13 TraesCS4D01G011400 chr4A 89.031 702 58 10 2332 3028 597976820 597976133 0.000000e+00 852.0
14 TraesCS4D01G011400 chr4A 83.060 366 36 15 3090 3446 598044547 598044199 3.340000e-80 309.0
15 TraesCS4D01G011400 chr4A 97.030 101 3 0 3346 3446 597974021 597973921 1.640000e-38 171.0
16 TraesCS4D01G011400 chr4A 88.148 135 16 0 2935 3069 502922236 502922370 9.900000e-36 161.0
17 TraesCS4D01G011400 chr4A 100.000 33 0 0 3230 3262 597974119 597974151 1.030000e-05 62.1
18 TraesCS4D01G011400 chr4A 76.667 120 14 12 3192 3305 597974148 597974037 2.000000e-03 54.7
19 TraesCS4D01G011400 chr1B 80.311 1285 223 23 1166 2432 402798359 402799631 0.000000e+00 944.0
20 TraesCS4D01G011400 chr1B 95.122 41 1 1 3256 3295 218001008 218000968 2.870000e-06 63.9
21 TraesCS4D01G011400 chr1D 80.171 1286 223 26 1166 2432 298939716 298940988 0.000000e+00 933.0
22 TraesCS4D01G011400 chr1A 80.171 1286 223 27 1166 2432 372909649 372910921 0.000000e+00 933.0
23 TraesCS4D01G011400 chr1A 88.722 133 15 0 2937 3069 26797477 26797609 2.750000e-36 163.0
24 TraesCS4D01G011400 chr1A 92.453 53 4 0 393 445 354868919 354868971 3.690000e-10 76.8
25 TraesCS4D01G011400 chr1A 92.453 53 4 0 393 445 354870904 354870956 3.690000e-10 76.8
26 TraesCS4D01G011400 chr7A 88.722 133 15 0 2937 3069 16623197 16623329 2.750000e-36 163.0
27 TraesCS4D01G011400 chr7A 86.047 86 8 2 2723 2807 182561929 182561847 4.740000e-14 89.8
28 TraesCS4D01G011400 chr6D 85.806 155 19 2 2933 3087 449500555 449500706 9.900000e-36 161.0
29 TraesCS4D01G011400 chr6B 86.093 151 19 2 2937 3087 1128170 1128318 9.900000e-36 161.0
30 TraesCS4D01G011400 chr6B 78.836 189 29 8 3122 3305 14326453 14326635 2.170000e-22 117.0
31 TraesCS4D01G011400 chr6B 91.071 56 5 0 393 448 708762252 708762197 3.690000e-10 76.8
32 TraesCS4D01G011400 chr6B 91.071 56 5 0 393 448 708764236 708764181 3.690000e-10 76.8
33 TraesCS4D01G011400 chr5A 88.060 134 16 0 2936 3069 702727954 702727821 3.560000e-35 159.0
34 TraesCS4D01G011400 chr3A 87.143 140 17 1 2930 3069 199578453 199578315 1.280000e-34 158.0
35 TraesCS4D01G011400 chr2B 85.333 150 20 2 2938 3087 759142974 759143121 1.660000e-33 154.0
36 TraesCS4D01G011400 chr2B 92.683 41 2 1 2497 2537 795033735 795033696 1.340000e-04 58.4
37 TraesCS4D01G011400 chr7B 84.884 86 9 2 2723 2807 144518042 144517960 2.200000e-12 84.2
38 TraesCS4D01G011400 chr7B 100.000 30 0 0 2502 2531 253635919 253635948 4.800000e-04 56.5
39 TraesCS4D01G011400 chr5B 91.071 56 5 0 393 448 545487502 545487447 3.690000e-10 76.8
40 TraesCS4D01G011400 chr5B 90.909 44 2 2 2502 2544 545294214 545294172 1.340000e-04 58.4
41 TraesCS4D01G011400 chr7D 91.667 48 4 0 2498 2545 510845932 510845885 2.220000e-07 67.6
42 TraesCS4D01G011400 chr5D 97.143 35 1 0 2497 2531 530166025 530165991 3.710000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G011400 chr4D 5565798 5569243 3445 False 2200.666667 6364 88.489333 1 3446 3 chr4D.!!$F1 3445
1 TraesCS4D01G011400 chr4B 9690581 9693143 2562 False 1067.000000 2953 82.885333 641 3322 3 chr4B.!!$F2 2681
2 TraesCS4D01G011400 chr4A 598044199 598045865 1666 True 1065.000000 1821 88.511000 1665 3446 2 chr4A.!!$R2 1781
3 TraesCS4D01G011400 chr4A 597973921 597976820 2899 True 554.925000 1142 88.398750 2332 3446 4 chr4A.!!$R1 1114
4 TraesCS4D01G011400 chr1B 402798359 402799631 1272 False 944.000000 944 80.311000 1166 2432 1 chr1B.!!$F1 1266
5 TraesCS4D01G011400 chr1D 298939716 298940988 1272 False 933.000000 933 80.171000 1166 2432 1 chr1D.!!$F1 1266
6 TraesCS4D01G011400 chr1A 372909649 372910921 1272 False 933.000000 933 80.171000 1166 2432 1 chr1A.!!$F2 1266

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
577 578 0.035056 AGGTGGAAGTGCCTACATGC 60.035 55.0 0.0 0.0 37.63 4.06 F
1118 1181 0.032217 CTGCTTCTCCTCCTCCTCCT 60.032 60.0 0.0 0.0 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2418 2490 1.069513 TCTTGGTTGTCGTCGTCCATT 59.930 47.619 0.0 0.0 0.00 3.16 R
2797 2885 0.802607 GACGTCTTCATGACCTCCGC 60.803 60.000 8.7 0.0 42.49 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.945456 ACTGATCTCTACATGGCCGTA 58.055 47.619 0.00 0.00 0.00 4.02
23 24 2.887783 ACTGATCTCTACATGGCCGTAG 59.112 50.000 10.66 10.66 40.26 3.51
24 25 1.613925 TGATCTCTACATGGCCGTAGC 59.386 52.381 11.79 1.07 39.01 3.58
35 36 1.216178 GCCGTAGCCTGTCCGTTAA 59.784 57.895 0.00 0.00 0.00 2.01
37 38 1.741394 GCCGTAGCCTGTCCGTTAAAT 60.741 52.381 0.00 0.00 0.00 1.40
38 39 2.481795 GCCGTAGCCTGTCCGTTAAATA 60.482 50.000 0.00 0.00 0.00 1.40
40 41 2.793232 CGTAGCCTGTCCGTTAAATAGC 59.207 50.000 0.00 0.00 0.00 2.97
41 42 2.327200 AGCCTGTCCGTTAAATAGCC 57.673 50.000 0.00 0.00 0.00 3.93
42 43 1.557832 AGCCTGTCCGTTAAATAGCCA 59.442 47.619 0.00 0.00 0.00 4.75
43 44 2.026636 AGCCTGTCCGTTAAATAGCCAA 60.027 45.455 0.00 0.00 0.00 4.52
44 45 2.096980 GCCTGTCCGTTAAATAGCCAAC 59.903 50.000 0.00 0.00 0.00 3.77
45 46 3.340034 CCTGTCCGTTAAATAGCCAACA 58.660 45.455 0.00 0.00 0.00 3.33
46 47 3.126343 CCTGTCCGTTAAATAGCCAACAC 59.874 47.826 0.00 0.00 0.00 3.32
47 48 3.741249 TGTCCGTTAAATAGCCAACACA 58.259 40.909 0.00 0.00 0.00 3.72
48 49 3.499157 TGTCCGTTAAATAGCCAACACAC 59.501 43.478 0.00 0.00 0.00 3.82
49 50 2.737783 TCCGTTAAATAGCCAACACACG 59.262 45.455 0.00 0.00 0.00 4.49
50 51 2.481185 CCGTTAAATAGCCAACACACGT 59.519 45.455 0.00 0.00 0.00 4.49
52 53 4.145997 CGTTAAATAGCCAACACACGTTC 58.854 43.478 0.00 0.00 31.13 3.95
56 57 1.873698 TAGCCAACACACGTTCCTTC 58.126 50.000 0.00 0.00 31.13 3.46
57 58 0.180406 AGCCAACACACGTTCCTTCT 59.820 50.000 0.00 0.00 31.13 2.85
58 59 1.414919 AGCCAACACACGTTCCTTCTA 59.585 47.619 0.00 0.00 31.13 2.10
61 62 3.724374 CCAACACACGTTCCTTCTAAGA 58.276 45.455 0.00 0.00 31.13 2.10
63 64 4.211374 CCAACACACGTTCCTTCTAAGAAG 59.789 45.833 0.00 0.00 31.13 2.85
65 66 3.640029 ACACACGTTCCTTCTAAGAAGGA 59.360 43.478 15.59 15.59 44.23 3.36
76 77 7.994194 TCCTTCTAAGAAGGAATTACGTAGAC 58.006 38.462 16.65 0.00 43.05 2.59
77 78 6.911511 CCTTCTAAGAAGGAATTACGTAGACG 59.088 42.308 0.00 0.00 41.59 4.18
79 80 3.433513 AGAAGGAATTACGTAGACGCC 57.566 47.619 1.14 0.00 44.43 5.68
80 81 2.756760 AGAAGGAATTACGTAGACGCCA 59.243 45.455 1.14 0.00 44.43 5.69
81 82 2.573941 AGGAATTACGTAGACGCCAC 57.426 50.000 1.14 0.00 44.43 5.01
84 85 3.696051 AGGAATTACGTAGACGCCACTAA 59.304 43.478 1.14 0.00 44.43 2.24
85 86 4.340381 AGGAATTACGTAGACGCCACTAAT 59.660 41.667 1.14 0.00 44.43 1.73
87 88 4.906065 ATTACGTAGACGCCACTAATCA 57.094 40.909 1.14 0.00 44.43 2.57
89 90 2.872370 ACGTAGACGCCACTAATCAAC 58.128 47.619 1.14 0.00 44.43 3.18
90 91 2.190981 CGTAGACGCCACTAATCAACC 58.809 52.381 0.00 0.00 0.00 3.77
91 92 2.416296 CGTAGACGCCACTAATCAACCA 60.416 50.000 0.00 0.00 0.00 3.67
92 93 2.386661 AGACGCCACTAATCAACCAG 57.613 50.000 0.00 0.00 0.00 4.00
93 94 1.066143 AGACGCCACTAATCAACCAGG 60.066 52.381 0.00 0.00 0.00 4.45
94 95 0.981183 ACGCCACTAATCAACCAGGA 59.019 50.000 0.00 0.00 0.00 3.86
95 96 1.559682 ACGCCACTAATCAACCAGGAT 59.440 47.619 0.00 0.00 0.00 3.24
96 97 2.769663 ACGCCACTAATCAACCAGGATA 59.230 45.455 0.00 0.00 0.00 2.59
97 98 3.199071 ACGCCACTAATCAACCAGGATAA 59.801 43.478 0.00 0.00 0.00 1.75
98 99 3.809832 CGCCACTAATCAACCAGGATAAG 59.190 47.826 0.00 0.00 0.00 1.73
99 100 4.683400 CGCCACTAATCAACCAGGATAAGT 60.683 45.833 0.00 0.00 0.00 2.24
100 101 4.816925 GCCACTAATCAACCAGGATAAGTC 59.183 45.833 0.00 0.00 0.00 3.01
101 102 5.050490 CCACTAATCAACCAGGATAAGTCG 58.950 45.833 0.00 0.00 0.00 4.18
102 103 5.395324 CCACTAATCAACCAGGATAAGTCGT 60.395 44.000 0.00 0.00 0.00 4.34
103 104 5.520288 CACTAATCAACCAGGATAAGTCGTG 59.480 44.000 0.00 0.00 39.38 4.35
104 105 2.380084 TCAACCAGGATAAGTCGTGC 57.620 50.000 0.00 0.00 38.57 5.34
105 106 1.066430 TCAACCAGGATAAGTCGTGCC 60.066 52.381 0.00 0.00 38.57 5.01
106 107 1.066143 CAACCAGGATAAGTCGTGCCT 60.066 52.381 0.00 0.00 38.57 4.75
107 108 0.537188 ACCAGGATAAGTCGTGCCTG 59.463 55.000 0.00 0.00 45.81 4.85
114 115 3.870955 AGTCGTGCCTGACTTGGA 58.129 55.556 2.32 0.00 46.85 3.53
115 116 1.367840 AGTCGTGCCTGACTTGGAC 59.632 57.895 2.32 0.00 46.85 4.02
116 117 1.115930 AGTCGTGCCTGACTTGGACT 61.116 55.000 2.32 0.00 46.85 3.85
118 119 1.000506 GTCGTGCCTGACTTGGACTAA 59.999 52.381 0.00 0.00 35.95 2.24
119 120 1.272490 TCGTGCCTGACTTGGACTAAG 59.728 52.381 0.00 0.00 42.30 2.18
120 121 1.272490 CGTGCCTGACTTGGACTAAGA 59.728 52.381 5.46 0.00 39.76 2.10
121 122 2.288825 CGTGCCTGACTTGGACTAAGAA 60.289 50.000 5.46 0.00 39.76 2.52
123 124 3.748568 GTGCCTGACTTGGACTAAGAAAG 59.251 47.826 5.46 2.48 39.76 2.62
124 125 3.646162 TGCCTGACTTGGACTAAGAAAGA 59.354 43.478 5.46 0.00 39.76 2.52
126 127 5.063880 GCCTGACTTGGACTAAGAAAGAAA 58.936 41.667 5.46 0.00 39.76 2.52
128 129 6.513556 GCCTGACTTGGACTAAGAAAGAAAAC 60.514 42.308 5.46 0.00 39.76 2.43
129 130 6.768381 CCTGACTTGGACTAAGAAAGAAAACT 59.232 38.462 5.46 0.00 39.76 2.66
130 131 7.931948 CCTGACTTGGACTAAGAAAGAAAACTA 59.068 37.037 5.46 0.00 39.76 2.24
131 132 9.326413 CTGACTTGGACTAAGAAAGAAAACTAA 57.674 33.333 5.46 0.00 39.76 2.24
132 133 9.675464 TGACTTGGACTAAGAAAGAAAACTAAA 57.325 29.630 5.46 0.00 39.76 1.85
149 150 8.990163 AAAACTAAAGAAATCCTAACTGACCA 57.010 30.769 0.00 0.00 0.00 4.02
150 151 9.588096 AAAACTAAAGAAATCCTAACTGACCAT 57.412 29.630 0.00 0.00 0.00 3.55
152 153 8.152023 ACTAAAGAAATCCTAACTGACCATCT 57.848 34.615 0.00 0.00 0.00 2.90
157 158 7.339482 AGAAATCCTAACTGACCATCTAAACC 58.661 38.462 0.00 0.00 0.00 3.27
158 159 4.730949 TCCTAACTGACCATCTAAACCG 57.269 45.455 0.00 0.00 0.00 4.44
159 160 4.091549 TCCTAACTGACCATCTAAACCGT 58.908 43.478 0.00 0.00 0.00 4.83
161 162 5.716228 TCCTAACTGACCATCTAAACCGTAA 59.284 40.000 0.00 0.00 0.00 3.18
162 163 5.809051 CCTAACTGACCATCTAAACCGTAAC 59.191 44.000 0.00 0.00 0.00 2.50
164 165 6.594788 AACTGACCATCTAAACCGTAACTA 57.405 37.500 0.00 0.00 0.00 2.24
165 166 5.958955 ACTGACCATCTAAACCGTAACTAC 58.041 41.667 0.00 0.00 0.00 2.73
166 167 5.713861 ACTGACCATCTAAACCGTAACTACT 59.286 40.000 0.00 0.00 0.00 2.57
167 168 6.886459 ACTGACCATCTAAACCGTAACTACTA 59.114 38.462 0.00 0.00 0.00 1.82
169 170 6.886459 TGACCATCTAAACCGTAACTACTACT 59.114 38.462 0.00 0.00 0.00 2.57
171 172 8.986929 ACCATCTAAACCGTAACTACTACTAT 57.013 34.615 0.00 0.00 0.00 2.12
172 173 9.061435 ACCATCTAAACCGTAACTACTACTATC 57.939 37.037 0.00 0.00 0.00 2.08
173 174 9.060347 CCATCTAAACCGTAACTACTACTATCA 57.940 37.037 0.00 0.00 0.00 2.15
174 175 9.875675 CATCTAAACCGTAACTACTACTATCAC 57.124 37.037 0.00 0.00 0.00 3.06
176 177 8.883731 TCTAAACCGTAACTACTACTATCACAC 58.116 37.037 0.00 0.00 0.00 3.82
178 179 7.636150 AACCGTAACTACTACTATCACACAT 57.364 36.000 0.00 0.00 0.00 3.21
180 181 5.913514 CCGTAACTACTACTATCACACATGC 59.086 44.000 0.00 0.00 0.00 4.06
181 182 6.459161 CCGTAACTACTACTATCACACATGCA 60.459 42.308 0.00 0.00 0.00 3.96
182 183 7.139392 CGTAACTACTACTATCACACATGCAT 58.861 38.462 0.00 0.00 0.00 3.96
183 184 7.113544 CGTAACTACTACTATCACACATGCATG 59.886 40.741 25.09 25.09 0.00 4.06
184 185 5.292765 ACTACTACTATCACACATGCATGC 58.707 41.667 26.53 11.82 0.00 4.06
186 187 2.723322 ACTATCACACATGCATGCCT 57.277 45.000 26.53 8.77 0.00 4.75
187 188 3.008835 ACTATCACACATGCATGCCTT 57.991 42.857 26.53 8.03 0.00 4.35
188 189 3.359033 ACTATCACACATGCATGCCTTT 58.641 40.909 26.53 10.35 0.00 3.11
189 190 2.953466 ATCACACATGCATGCCTTTC 57.047 45.000 26.53 0.00 0.00 2.62
190 191 1.618487 TCACACATGCATGCCTTTCA 58.382 45.000 26.53 3.13 0.00 2.69
192 193 2.563620 TCACACATGCATGCCTTTCATT 59.436 40.909 26.53 1.08 31.79 2.57
193 194 3.007074 TCACACATGCATGCCTTTCATTT 59.993 39.130 26.53 0.28 31.79 2.32
201 202 4.593597 CATGCCTTTCATTTCATGCAAC 57.406 40.909 0.00 0.00 31.79 4.17
202 203 2.674954 TGCCTTTCATTTCATGCAACG 58.325 42.857 0.00 0.00 0.00 4.10
203 204 2.035704 TGCCTTTCATTTCATGCAACGT 59.964 40.909 0.00 0.00 0.00 3.99
204 205 2.409378 GCCTTTCATTTCATGCAACGTG 59.591 45.455 0.00 0.00 0.00 4.49
205 206 2.409378 CCTTTCATTTCATGCAACGTGC 59.591 45.455 0.00 0.00 45.29 5.34
214 215 3.420943 GCAACGTGCACTCCTTGT 58.579 55.556 16.19 1.41 44.26 3.16
215 216 1.727467 GCAACGTGCACTCCTTGTT 59.273 52.632 16.19 8.25 44.26 2.83
216 217 0.317020 GCAACGTGCACTCCTTGTTC 60.317 55.000 16.19 2.52 44.26 3.18
217 218 0.042188 CAACGTGCACTCCTTGTTCG 60.042 55.000 16.19 0.08 0.00 3.95
218 219 0.179094 AACGTGCACTCCTTGTTCGA 60.179 50.000 16.19 0.00 0.00 3.71
220 221 0.439985 CGTGCACTCCTTGTTCGATG 59.560 55.000 16.19 0.00 0.00 3.84
222 223 0.955428 TGCACTCCTTGTTCGATGGC 60.955 55.000 0.00 0.00 0.00 4.40
223 224 0.955428 GCACTCCTTGTTCGATGGCA 60.955 55.000 0.00 0.00 0.00 4.92
224 225 1.522668 CACTCCTTGTTCGATGGCAA 58.477 50.000 0.00 0.00 0.00 4.52
227 228 3.689161 CACTCCTTGTTCGATGGCAATTA 59.311 43.478 0.00 0.00 0.00 1.40
228 229 4.155826 CACTCCTTGTTCGATGGCAATTAA 59.844 41.667 0.00 0.00 0.00 1.40
230 231 5.242838 ACTCCTTGTTCGATGGCAATTAAAA 59.757 36.000 0.00 0.00 0.00 1.52
233 234 7.158021 TCCTTGTTCGATGGCAATTAAAAATT 58.842 30.769 0.00 0.00 0.00 1.82
236 237 9.739786 CTTGTTCGATGGCAATTAAAAATTTAC 57.260 29.630 0.00 0.00 0.00 2.01
237 238 8.245701 TGTTCGATGGCAATTAAAAATTTACC 57.754 30.769 0.00 0.00 0.00 2.85
238 239 7.872993 TGTTCGATGGCAATTAAAAATTTACCA 59.127 29.630 0.00 6.42 0.00 3.25
239 240 8.713271 GTTCGATGGCAATTAAAAATTTACCAA 58.287 29.630 0.00 0.00 0.00 3.67
240 241 9.442047 TTCGATGGCAATTAAAAATTTACCAAT 57.558 25.926 0.00 0.00 0.00 3.16
241 242 9.092876 TCGATGGCAATTAAAAATTTACCAATC 57.907 29.630 0.00 6.11 0.00 2.67
242 243 9.097257 CGATGGCAATTAAAAATTTACCAATCT 57.903 29.630 0.00 0.00 0.00 2.40
245 246 9.784531 TGGCAATTAAAAATTTACCAATCTTGA 57.215 25.926 0.00 0.00 0.00 3.02
253 254 6.683974 AATTTACCAATCTTGATCCAGTCG 57.316 37.500 0.00 0.00 0.00 4.18
254 255 2.698855 ACCAATCTTGATCCAGTCGG 57.301 50.000 0.00 0.00 0.00 4.79
255 256 1.210478 ACCAATCTTGATCCAGTCGGG 59.790 52.381 0.00 0.00 38.37 5.14
256 257 1.210478 CCAATCTTGATCCAGTCGGGT 59.790 52.381 0.00 0.00 38.11 5.28
257 258 2.283298 CAATCTTGATCCAGTCGGGTG 58.717 52.381 0.00 0.00 38.11 4.61
258 259 0.833287 ATCTTGATCCAGTCGGGTGG 59.167 55.000 0.00 0.00 39.19 4.61
263 264 3.787394 TCCAGTCGGGTGGAGTTC 58.213 61.111 2.79 0.00 41.99 3.01
266 267 1.185618 CCAGTCGGGTGGAGTTCTGA 61.186 60.000 0.00 0.00 40.44 3.27
267 268 0.679505 CAGTCGGGTGGAGTTCTGAA 59.320 55.000 0.00 0.00 0.00 3.02
268 269 0.680061 AGTCGGGTGGAGTTCTGAAC 59.320 55.000 12.54 12.54 0.00 3.18
269 270 0.391597 GTCGGGTGGAGTTCTGAACA 59.608 55.000 21.50 0.00 0.00 3.18
271 272 2.232941 GTCGGGTGGAGTTCTGAACATA 59.767 50.000 21.50 5.46 0.00 2.29
274 275 2.633488 GGTGGAGTTCTGAACATAGGC 58.367 52.381 21.50 8.09 0.00 3.93
275 276 2.027192 GGTGGAGTTCTGAACATAGGCA 60.027 50.000 21.50 0.00 0.00 4.75
276 277 3.265791 GTGGAGTTCTGAACATAGGCAG 58.734 50.000 21.50 0.00 0.00 4.85
277 278 2.284190 GGAGTTCTGAACATAGGCAGC 58.716 52.381 21.50 0.00 32.27 5.25
278 279 2.355108 GGAGTTCTGAACATAGGCAGCA 60.355 50.000 21.50 0.00 32.27 4.41
279 280 2.675348 GAGTTCTGAACATAGGCAGCAC 59.325 50.000 21.50 0.00 32.27 4.40
280 281 1.740025 GTTCTGAACATAGGCAGCACC 59.260 52.381 15.34 0.00 39.61 5.01
289 290 4.021925 GGCAGCACCTCCTTCGGT 62.022 66.667 0.00 0.00 37.93 4.69
290 291 2.032681 GCAGCACCTCCTTCGGTT 59.967 61.111 0.00 0.00 34.29 4.44
291 292 2.035442 GCAGCACCTCCTTCGGTTC 61.035 63.158 0.00 0.00 34.29 3.62
292 293 1.674057 CAGCACCTCCTTCGGTTCT 59.326 57.895 0.00 0.00 34.29 3.01
293 294 0.671781 CAGCACCTCCTTCGGTTCTG 60.672 60.000 0.00 0.00 40.85 3.02
294 295 1.376037 GCACCTCCTTCGGTTCTGG 60.376 63.158 0.00 0.00 34.29 3.86
295 296 2.058675 CACCTCCTTCGGTTCTGGT 58.941 57.895 0.00 0.00 34.29 4.00
296 297 0.396811 CACCTCCTTCGGTTCTGGTT 59.603 55.000 0.00 0.00 34.29 3.67
297 298 0.685660 ACCTCCTTCGGTTCTGGTTC 59.314 55.000 0.00 0.00 31.94 3.62
298 299 0.036294 CCTCCTTCGGTTCTGGTTCC 60.036 60.000 0.00 0.00 0.00 3.62
300 301 0.685097 TCCTTCGGTTCTGGTTCCTG 59.315 55.000 0.00 0.00 0.00 3.86
303 304 2.622436 CTTCGGTTCTGGTTCCTGATC 58.378 52.381 0.00 0.00 0.00 2.92
304 305 1.639722 TCGGTTCTGGTTCCTGATCA 58.360 50.000 0.00 0.00 0.00 2.92
305 306 1.974957 TCGGTTCTGGTTCCTGATCAA 59.025 47.619 0.00 0.00 0.00 2.57
307 308 2.549992 CGGTTCTGGTTCCTGATCAACA 60.550 50.000 0.00 0.00 0.00 3.33
308 309 3.690460 GGTTCTGGTTCCTGATCAACAT 58.310 45.455 0.00 0.00 0.00 2.71
309 310 3.691609 GGTTCTGGTTCCTGATCAACATC 59.308 47.826 0.00 0.00 0.00 3.06
310 311 3.251479 TCTGGTTCCTGATCAACATCG 57.749 47.619 0.00 0.00 0.00 3.84
311 312 2.093500 TCTGGTTCCTGATCAACATCGG 60.093 50.000 0.00 0.00 35.37 4.18
314 315 3.723172 CCTGATCAACATCGGGCG 58.277 61.111 0.00 0.00 46.71 6.13
316 317 1.154205 CCTGATCAACATCGGGCGAC 61.154 60.000 0.00 0.00 46.71 5.19
329 330 2.597510 GCGACCTGGGCCTTTTGT 60.598 61.111 4.53 0.00 0.00 2.83
332 333 1.106944 CGACCTGGGCCTTTTGTTGT 61.107 55.000 4.53 0.00 0.00 3.32
334 335 2.525368 GACCTGGGCCTTTTGTTGTAT 58.475 47.619 4.53 0.00 0.00 2.29
336 337 3.427573 ACCTGGGCCTTTTGTTGTATAC 58.572 45.455 4.53 0.00 0.00 1.47
337 338 3.075432 ACCTGGGCCTTTTGTTGTATACT 59.925 43.478 4.53 0.00 0.00 2.12
338 339 3.694566 CCTGGGCCTTTTGTTGTATACTC 59.305 47.826 4.53 0.00 0.00 2.59
339 340 3.692690 TGGGCCTTTTGTTGTATACTCC 58.307 45.455 4.53 0.00 0.00 3.85
341 342 3.945921 GGGCCTTTTGTTGTATACTCCTC 59.054 47.826 0.84 0.00 0.00 3.71
342 343 4.324331 GGGCCTTTTGTTGTATACTCCTCT 60.324 45.833 0.84 0.00 0.00 3.69
344 345 6.409349 GGGCCTTTTGTTGTATACTCCTCTAT 60.409 42.308 0.84 0.00 0.00 1.98
345 346 6.483640 GGCCTTTTGTTGTATACTCCTCTATG 59.516 42.308 4.17 0.00 0.00 2.23
346 347 6.017852 GCCTTTTGTTGTATACTCCTCTATGC 60.018 42.308 4.17 0.00 0.00 3.14
347 348 7.047891 CCTTTTGTTGTATACTCCTCTATGCA 58.952 38.462 4.17 0.00 0.00 3.96
349 350 9.113838 CTTTTGTTGTATACTCCTCTATGCATT 57.886 33.333 3.54 0.00 0.00 3.56
352 353 6.099701 TGTTGTATACTCCTCTATGCATTGGT 59.900 38.462 3.54 0.00 0.00 3.67
354 355 7.228314 TGTATACTCCTCTATGCATTGGTAC 57.772 40.000 3.54 4.90 0.00 3.34
356 357 6.942163 ATACTCCTCTATGCATTGGTACAT 57.058 37.500 3.54 0.00 39.30 2.29
357 358 4.965814 ACTCCTCTATGCATTGGTACATG 58.034 43.478 3.54 0.00 39.30 3.21
358 359 3.743521 TCCTCTATGCATTGGTACATGC 58.256 45.455 3.54 10.46 41.06 4.06
363 364 1.908344 TGCATTGGTACATGCACTGT 58.092 45.000 14.93 0.00 43.71 3.55
366 367 4.775236 TGCATTGGTACATGCACTGTATA 58.225 39.130 14.93 0.00 43.71 1.47
368 369 5.827267 TGCATTGGTACATGCACTGTATAAT 59.173 36.000 14.93 11.14 43.71 1.28
370 371 7.041440 TGCATTGGTACATGCACTGTATAATAC 60.041 37.037 14.93 9.96 43.71 1.89
371 372 7.509797 CATTGGTACATGCACTGTATAATACG 58.490 38.462 10.74 0.00 42.21 3.06
374 375 6.921307 TGGTACATGCACTGTATAATACGAAG 59.079 38.462 10.74 0.00 42.21 3.79
375 376 6.921857 GGTACATGCACTGTATAATACGAAGT 59.078 38.462 10.74 0.00 43.22 3.01
377 378 9.114965 GTACATGCACTGTATAATACGAAGTAG 57.885 37.037 10.74 0.00 43.93 2.57
378 379 6.641314 ACATGCACTGTATAATACGAAGTAGC 59.359 38.462 0.00 0.00 41.20 3.58
393 394 7.336161 ACGAAGTAGCATGTACTAATTCTCT 57.664 36.000 14.44 2.55 42.30 3.10
394 395 7.773149 ACGAAGTAGCATGTACTAATTCTCTT 58.227 34.615 14.44 1.60 42.30 2.85
395 396 8.251721 ACGAAGTAGCATGTACTAATTCTCTTT 58.748 33.333 14.44 0.44 42.30 2.52
396 397 8.747666 CGAAGTAGCATGTACTAATTCTCTTTC 58.252 37.037 14.44 4.64 42.30 2.62
405 406 8.712285 TGTACTAATTCTCTTTCAAATACGGG 57.288 34.615 0.00 0.00 0.00 5.28
406 407 8.533657 TGTACTAATTCTCTTTCAAATACGGGA 58.466 33.333 0.00 0.00 0.00 5.14
410 411 4.280436 TCTCTTTCAAATACGGGAGCAA 57.720 40.909 0.00 0.00 0.00 3.91
411 412 4.647611 TCTCTTTCAAATACGGGAGCAAA 58.352 39.130 0.00 0.00 0.00 3.68
412 413 5.253330 TCTCTTTCAAATACGGGAGCAAAT 58.747 37.500 0.00 0.00 0.00 2.32
414 415 4.764823 TCTTTCAAATACGGGAGCAAATGT 59.235 37.500 0.00 0.00 0.00 2.71
415 416 5.941058 TCTTTCAAATACGGGAGCAAATGTA 59.059 36.000 0.00 0.00 0.00 2.29
417 418 4.196193 TCAAATACGGGAGCAAATGTAGG 58.804 43.478 0.00 0.00 0.00 3.18
418 419 3.926058 AATACGGGAGCAAATGTAGGT 57.074 42.857 0.00 0.00 0.00 3.08
419 420 2.973694 TACGGGAGCAAATGTAGGTC 57.026 50.000 0.00 0.00 0.00 3.85
426 427 4.425577 GAGCAAATGTAGGTCCACAAAG 57.574 45.455 0.00 0.00 30.84 2.77
427 428 3.821033 GAGCAAATGTAGGTCCACAAAGT 59.179 43.478 0.00 0.00 30.84 2.66
428 429 4.215109 AGCAAATGTAGGTCCACAAAGTT 58.785 39.130 0.00 0.00 30.84 2.66
429 430 4.037923 AGCAAATGTAGGTCCACAAAGTTG 59.962 41.667 0.00 2.60 30.84 3.16
430 431 4.037446 GCAAATGTAGGTCCACAAAGTTGA 59.963 41.667 0.00 0.00 30.84 3.18
431 432 5.519722 CAAATGTAGGTCCACAAAGTTGAC 58.480 41.667 0.00 0.00 30.84 3.18
432 433 2.828877 TGTAGGTCCACAAAGTTGACG 58.171 47.619 0.00 0.00 30.32 4.35
433 434 2.168936 TGTAGGTCCACAAAGTTGACGT 59.831 45.455 0.00 0.00 32.62 4.34
434 435 3.384146 TGTAGGTCCACAAAGTTGACGTA 59.616 43.478 0.00 0.00 30.97 3.57
436 437 3.876341 AGGTCCACAAAGTTGACGTAAA 58.124 40.909 0.00 0.00 30.32 2.01
438 439 4.095334 AGGTCCACAAAGTTGACGTAAAAC 59.905 41.667 5.64 5.64 30.32 2.43
439 440 4.142643 GGTCCACAAAGTTGACGTAAAACA 60.143 41.667 14.15 0.00 30.32 2.83
440 441 4.789629 GTCCACAAAGTTGACGTAAAACAC 59.210 41.667 14.15 1.00 0.00 3.32
441 442 4.099824 CCACAAAGTTGACGTAAAACACC 58.900 43.478 14.15 0.00 0.00 4.16
442 443 4.379603 CCACAAAGTTGACGTAAAACACCA 60.380 41.667 14.15 0.00 0.00 4.17
443 444 5.336744 CACAAAGTTGACGTAAAACACCAT 58.663 37.500 14.15 0.00 0.00 3.55
444 445 5.454232 CACAAAGTTGACGTAAAACACCATC 59.546 40.000 14.15 0.00 0.00 3.51
445 446 4.823790 AAGTTGACGTAAAACACCATCC 57.176 40.909 14.15 0.00 0.00 3.51
446 447 4.081322 AGTTGACGTAAAACACCATCCT 57.919 40.909 14.15 0.00 0.00 3.24
447 448 4.457466 AGTTGACGTAAAACACCATCCTT 58.543 39.130 14.15 0.00 0.00 3.36
448 449 5.613329 AGTTGACGTAAAACACCATCCTTA 58.387 37.500 14.15 0.00 0.00 2.69
449 450 5.467735 AGTTGACGTAAAACACCATCCTTAC 59.532 40.000 14.15 0.00 0.00 2.34
450 451 5.217978 TGACGTAAAACACCATCCTTACT 57.782 39.130 0.00 0.00 0.00 2.24
451 452 5.613329 TGACGTAAAACACCATCCTTACTT 58.387 37.500 0.00 0.00 0.00 2.24
454 455 5.930569 ACGTAAAACACCATCCTTACTTCTC 59.069 40.000 0.00 0.00 0.00 2.87
455 456 5.350640 CGTAAAACACCATCCTTACTTCTCC 59.649 44.000 0.00 0.00 0.00 3.71
456 457 4.993705 AAACACCATCCTTACTTCTCCA 57.006 40.909 0.00 0.00 0.00 3.86
457 458 5.520748 AAACACCATCCTTACTTCTCCAT 57.479 39.130 0.00 0.00 0.00 3.41
458 459 4.494091 ACACCATCCTTACTTCTCCATG 57.506 45.455 0.00 0.00 0.00 3.66
459 460 3.846588 ACACCATCCTTACTTCTCCATGT 59.153 43.478 0.00 0.00 0.00 3.21
460 461 5.030147 ACACCATCCTTACTTCTCCATGTA 58.970 41.667 0.00 0.00 0.00 2.29
462 463 6.158695 ACACCATCCTTACTTCTCCATGTATT 59.841 38.462 0.00 0.00 0.00 1.89
464 465 6.158695 ACCATCCTTACTTCTCCATGTATTGT 59.841 38.462 0.00 0.00 0.00 2.71
466 467 7.557719 CCATCCTTACTTCTCCATGTATTGTTT 59.442 37.037 0.00 0.00 0.00 2.83
467 468 7.921786 TCCTTACTTCTCCATGTATTGTTTG 57.078 36.000 0.00 0.00 0.00 2.93
468 469 6.374333 TCCTTACTTCTCCATGTATTGTTTGC 59.626 38.462 0.00 0.00 0.00 3.68
469 470 6.150976 CCTTACTTCTCCATGTATTGTTTGCA 59.849 38.462 0.00 0.00 0.00 4.08
470 471 7.148018 CCTTACTTCTCCATGTATTGTTTGCAT 60.148 37.037 0.00 0.00 0.00 3.96
471 472 8.800370 TTACTTCTCCATGTATTGTTTGCATA 57.200 30.769 0.00 0.00 0.00 3.14
472 473 7.701539 ACTTCTCCATGTATTGTTTGCATAA 57.298 32.000 0.00 0.00 0.00 1.90
473 474 8.121305 ACTTCTCCATGTATTGTTTGCATAAA 57.879 30.769 0.00 0.00 0.00 1.40
475 476 9.421806 CTTCTCCATGTATTGTTTGCATAAAAA 57.578 29.630 0.00 0.00 0.00 1.94
476 477 9.941325 TTCTCCATGTATTGTTTGCATAAAAAT 57.059 25.926 0.00 0.00 0.00 1.82
477 478 9.368674 TCTCCATGTATTGTTTGCATAAAAATG 57.631 29.630 0.00 0.00 0.00 2.32
478 479 9.368674 CTCCATGTATTGTTTGCATAAAAATGA 57.631 29.630 0.00 0.00 0.00 2.57
479 480 9.368674 TCCATGTATTGTTTGCATAAAAATGAG 57.631 29.630 0.00 0.00 0.00 2.90
482 483 9.709495 ATGTATTGTTTGCATAAAAATGAGTGT 57.291 25.926 0.00 0.00 0.00 3.55
483 484 9.539825 TGTATTGTTTGCATAAAAATGAGTGTT 57.460 25.926 0.00 0.00 0.00 3.32
485 486 8.891671 ATTGTTTGCATAAAAATGAGTGTTCT 57.108 26.923 0.00 0.00 0.00 3.01
490 491 5.700832 TGCATAAAAATGAGTGTTCTCGTCT 59.299 36.000 0.00 0.00 43.09 4.18
491 492 6.017933 GCATAAAAATGAGTGTTCTCGTCTG 58.982 40.000 0.00 0.00 43.09 3.51
492 493 6.347725 GCATAAAAATGAGTGTTCTCGTCTGT 60.348 38.462 0.00 0.00 43.09 3.41
494 495 8.708742 CATAAAAATGAGTGTTCTCGTCTGTTA 58.291 33.333 0.00 0.00 43.09 2.41
495 496 6.526566 AAAATGAGTGTTCTCGTCTGTTAC 57.473 37.500 0.00 0.00 43.09 2.50
507 508 1.381429 GTCTGTTACGAACGAAGACGC 59.619 52.381 0.14 0.00 43.96 5.19
510 511 0.664166 GTTACGAACGAAGACGCCCA 60.664 55.000 0.14 0.00 43.96 5.36
514 515 0.806102 CGAACGAAGACGCCCATGAT 60.806 55.000 0.00 0.00 43.96 2.45
517 518 2.684001 ACGAAGACGCCCATGATAAA 57.316 45.000 0.00 0.00 43.96 1.40
518 519 3.194005 ACGAAGACGCCCATGATAAAT 57.806 42.857 0.00 0.00 43.96 1.40
519 520 3.541632 ACGAAGACGCCCATGATAAATT 58.458 40.909 0.00 0.00 43.96 1.82
520 521 3.560068 ACGAAGACGCCCATGATAAATTC 59.440 43.478 0.00 0.00 43.96 2.17
521 522 3.362986 CGAAGACGCCCATGATAAATTCG 60.363 47.826 0.00 0.00 0.00 3.34
522 523 3.194005 AGACGCCCATGATAAATTCGT 57.806 42.857 0.00 0.00 0.00 3.85
523 524 3.541632 AGACGCCCATGATAAATTCGTT 58.458 40.909 0.00 0.00 0.00 3.85
524 525 4.699637 AGACGCCCATGATAAATTCGTTA 58.300 39.130 0.00 0.00 0.00 3.18
525 526 5.120399 AGACGCCCATGATAAATTCGTTAA 58.880 37.500 0.00 0.00 0.00 2.01
526 527 5.763204 AGACGCCCATGATAAATTCGTTAAT 59.237 36.000 0.00 0.00 0.00 1.40
527 528 5.997385 ACGCCCATGATAAATTCGTTAATC 58.003 37.500 0.00 0.00 0.00 1.75
528 529 5.763204 ACGCCCATGATAAATTCGTTAATCT 59.237 36.000 0.00 0.00 0.00 2.40
529 530 6.262273 ACGCCCATGATAAATTCGTTAATCTT 59.738 34.615 0.00 0.00 0.00 2.40
530 531 7.442969 ACGCCCATGATAAATTCGTTAATCTTA 59.557 33.333 0.00 0.00 0.00 2.10
532 533 9.959749 GCCCATGATAAATTCGTTAATCTTAAA 57.040 29.630 0.00 0.00 0.00 1.52
544 545 8.839947 TCGTTAATCTTAAAATGTCGTATCGA 57.160 30.769 0.00 0.00 0.00 3.59
558 559 5.305139 TCGTATCGACTCAATGTTTCAGA 57.695 39.130 0.00 0.00 0.00 3.27
559 560 5.332707 TCGTATCGACTCAATGTTTCAGAG 58.667 41.667 0.00 0.00 35.56 3.35
560 561 4.500837 CGTATCGACTCAATGTTTCAGAGG 59.499 45.833 0.00 0.00 33.76 3.69
562 563 3.653344 TCGACTCAATGTTTCAGAGGTG 58.347 45.455 0.00 0.00 33.76 4.00
563 564 2.738846 CGACTCAATGTTTCAGAGGTGG 59.261 50.000 0.00 0.00 33.76 4.61
565 566 4.389374 GACTCAATGTTTCAGAGGTGGAA 58.611 43.478 0.00 0.00 33.76 3.53
566 567 4.392940 ACTCAATGTTTCAGAGGTGGAAG 58.607 43.478 0.00 0.00 33.76 3.46
567 568 4.141390 ACTCAATGTTTCAGAGGTGGAAGT 60.141 41.667 0.00 0.00 33.76 3.01
568 569 4.136796 TCAATGTTTCAGAGGTGGAAGTG 58.863 43.478 0.00 0.00 0.00 3.16
569 570 1.967319 TGTTTCAGAGGTGGAAGTGC 58.033 50.000 0.00 0.00 0.00 4.40
570 571 1.239347 GTTTCAGAGGTGGAAGTGCC 58.761 55.000 0.00 0.00 37.10 5.01
571 572 1.140312 TTTCAGAGGTGGAAGTGCCT 58.860 50.000 0.00 0.00 37.63 4.75
572 573 2.024176 TTCAGAGGTGGAAGTGCCTA 57.976 50.000 0.00 0.00 37.63 3.93
573 574 1.267121 TCAGAGGTGGAAGTGCCTAC 58.733 55.000 0.00 0.00 37.63 3.18
574 575 0.976641 CAGAGGTGGAAGTGCCTACA 59.023 55.000 0.00 0.00 37.63 2.74
575 576 1.556911 CAGAGGTGGAAGTGCCTACAT 59.443 52.381 0.00 0.00 37.63 2.29
576 577 1.556911 AGAGGTGGAAGTGCCTACATG 59.443 52.381 0.00 0.00 37.63 3.21
577 578 0.035056 AGGTGGAAGTGCCTACATGC 60.035 55.000 0.00 0.00 37.63 4.06
578 579 1.369091 GGTGGAAGTGCCTACATGCG 61.369 60.000 0.00 0.00 37.63 4.73
579 580 0.673644 GTGGAAGTGCCTACATGCGT 60.674 55.000 0.00 0.00 37.63 5.24
580 581 0.036164 TGGAAGTGCCTACATGCGTT 59.964 50.000 0.00 0.00 37.63 4.84
581 582 0.727398 GGAAGTGCCTACATGCGTTC 59.273 55.000 0.00 0.00 0.00 3.95
582 583 1.438651 GAAGTGCCTACATGCGTTCA 58.561 50.000 0.00 0.00 30.90 3.18
583 584 2.009774 GAAGTGCCTACATGCGTTCAT 58.990 47.619 0.00 0.00 30.90 2.57
584 585 2.979814 AGTGCCTACATGCGTTCATA 57.020 45.000 0.00 0.00 0.00 2.15
585 586 2.826428 AGTGCCTACATGCGTTCATAG 58.174 47.619 0.00 0.00 0.00 2.23
586 587 2.430694 AGTGCCTACATGCGTTCATAGA 59.569 45.455 0.00 0.00 0.00 1.98
588 589 3.621268 GTGCCTACATGCGTTCATAGAAA 59.379 43.478 0.00 0.00 0.00 2.52
589 590 4.094294 GTGCCTACATGCGTTCATAGAAAA 59.906 41.667 0.00 0.00 0.00 2.29
590 591 4.881273 TGCCTACATGCGTTCATAGAAAAT 59.119 37.500 0.00 0.00 0.00 1.82
591 592 5.356751 TGCCTACATGCGTTCATAGAAAATT 59.643 36.000 0.00 0.00 0.00 1.82
594 595 7.042051 GCCTACATGCGTTCATAGAAAATTAGA 60.042 37.037 0.00 0.00 0.00 2.10
595 596 8.491152 CCTACATGCGTTCATAGAAAATTAGAG 58.509 37.037 0.00 0.00 0.00 2.43
596 597 9.249457 CTACATGCGTTCATAGAAAATTAGAGA 57.751 33.333 0.00 0.00 0.00 3.10
597 598 8.668510 ACATGCGTTCATAGAAAATTAGAGAT 57.331 30.769 0.00 0.00 0.00 2.75
598 599 9.764363 ACATGCGTTCATAGAAAATTAGAGATA 57.236 29.630 0.00 0.00 0.00 1.98
628 629 5.977725 GTGTACATACACGAGTATCTGCATT 59.022 40.000 6.43 0.00 45.87 3.56
629 630 6.475727 GTGTACATACACGAGTATCTGCATTT 59.524 38.462 6.43 0.00 45.87 2.32
630 631 5.973651 ACATACACGAGTATCTGCATTTG 57.026 39.130 2.24 0.00 38.88 2.32
632 633 5.291858 ACATACACGAGTATCTGCATTTGTG 59.708 40.000 2.24 0.00 38.88 3.33
633 634 2.416547 ACACGAGTATCTGCATTTGTGC 59.583 45.455 0.00 0.00 0.00 4.57
634 635 2.009774 ACGAGTATCTGCATTTGTGCC 58.990 47.619 0.00 0.00 0.00 5.01
636 637 2.009774 GAGTATCTGCATTTGTGCCGT 58.990 47.619 0.00 0.00 0.00 5.68
637 638 1.739466 AGTATCTGCATTTGTGCCGTG 59.261 47.619 0.00 0.00 0.00 4.94
638 639 1.468520 GTATCTGCATTTGTGCCGTGT 59.531 47.619 0.00 0.00 0.00 4.49
639 640 0.961019 ATCTGCATTTGTGCCGTGTT 59.039 45.000 0.00 0.00 0.00 3.32
641 642 1.950216 TCTGCATTTGTGCCGTGTTAA 59.050 42.857 0.00 0.00 0.00 2.01
642 643 2.359214 TCTGCATTTGTGCCGTGTTAAA 59.641 40.909 0.00 0.00 0.00 1.52
643 644 3.119291 CTGCATTTGTGCCGTGTTAAAA 58.881 40.909 0.00 0.00 0.00 1.52
644 645 3.521560 TGCATTTGTGCCGTGTTAAAAA 58.478 36.364 0.00 0.00 0.00 1.94
675 676 3.257624 ACACTTTGCTACGCTAGTAACCT 59.742 43.478 0.00 0.00 30.01 3.50
676 677 4.243270 CACTTTGCTACGCTAGTAACCTT 58.757 43.478 0.00 0.00 30.01 3.50
717 718 3.007323 GGGACCTGCTTACCCCGT 61.007 66.667 0.00 0.00 37.85 5.28
726 727 3.822167 CCTGCTTACCCCGTAAAAGAAAA 59.178 43.478 0.00 0.00 0.00 2.29
727 728 4.320714 CCTGCTTACCCCGTAAAAGAAAAC 60.321 45.833 0.00 0.00 0.00 2.43
728 729 4.205587 TGCTTACCCCGTAAAAGAAAACA 58.794 39.130 0.00 0.00 0.00 2.83
729 730 4.643784 TGCTTACCCCGTAAAAGAAAACAA 59.356 37.500 0.00 0.00 0.00 2.83
730 731 5.126707 TGCTTACCCCGTAAAAGAAAACAAA 59.873 36.000 0.00 0.00 0.00 2.83
731 732 6.041511 GCTTACCCCGTAAAAGAAAACAAAA 58.958 36.000 0.00 0.00 0.00 2.44
732 733 6.534436 GCTTACCCCGTAAAAGAAAACAAAAA 59.466 34.615 0.00 0.00 0.00 1.94
734 735 6.040209 ACCCCGTAAAAGAAAACAAAAACT 57.960 33.333 0.00 0.00 0.00 2.66
735 736 6.101332 ACCCCGTAAAAGAAAACAAAAACTC 58.899 36.000 0.00 0.00 0.00 3.01
736 737 6.100668 CCCCGTAAAAGAAAACAAAAACTCA 58.899 36.000 0.00 0.00 0.00 3.41
738 739 7.117956 CCCCGTAAAAGAAAACAAAAACTCAAA 59.882 33.333 0.00 0.00 0.00 2.69
739 740 8.496751 CCCGTAAAAGAAAACAAAAACTCAAAA 58.503 29.630 0.00 0.00 0.00 2.44
740 741 9.865484 CCGTAAAAGAAAACAAAAACTCAAAAA 57.135 25.926 0.00 0.00 0.00 1.94
782 783 1.062148 GTCCGATCCGCTAAACTTTGC 59.938 52.381 0.00 0.00 0.00 3.68
792 823 1.880027 CTAAACTTTGCCGTGCTCCTT 59.120 47.619 0.00 0.00 0.00 3.36
803 834 1.189403 GTGCTCCTTACGTTCGATCG 58.811 55.000 9.36 9.36 0.00 3.69
805 836 1.063616 TGCTCCTTACGTTCGATCGAG 59.936 52.381 21.80 10.35 34.70 4.04
806 837 1.597445 GCTCCTTACGTTCGATCGAGG 60.597 57.143 21.80 17.65 34.70 4.63
807 838 1.002684 CTCCTTACGTTCGATCGAGGG 60.003 57.143 21.80 15.82 34.70 4.30
808 839 1.019673 CCTTACGTTCGATCGAGGGA 58.980 55.000 21.80 8.49 34.70 4.20
809 840 1.607628 CCTTACGTTCGATCGAGGGAT 59.392 52.381 21.80 8.06 34.96 3.85
811 842 1.233019 TACGTTCGATCGAGGGATCC 58.767 55.000 21.80 1.92 45.16 3.36
822 853 1.139654 CGAGGGATCCACATGACATGT 59.860 52.381 15.48 15.48 46.22 3.21
950 986 4.849310 GGCCGCCGCATCCACTTA 62.849 66.667 0.00 0.00 36.38 2.24
951 987 2.822255 GCCGCCGCATCCACTTAA 60.822 61.111 0.00 0.00 34.03 1.85
953 989 1.743623 CCGCCGCATCCACTTAACA 60.744 57.895 0.00 0.00 0.00 2.41
955 991 1.423845 GCCGCATCCACTTAACACG 59.576 57.895 0.00 0.00 0.00 4.49
956 992 1.423845 CCGCATCCACTTAACACGC 59.576 57.895 0.00 0.00 0.00 5.34
957 993 1.019278 CCGCATCCACTTAACACGCT 61.019 55.000 0.00 0.00 0.00 5.07
959 995 1.464023 CGCATCCACTTAACACGCTTG 60.464 52.381 0.00 0.00 0.00 4.01
961 997 1.135689 CATCCACTTAACACGCTTGCC 60.136 52.381 0.00 0.00 0.00 4.52
962 998 0.179043 TCCACTTAACACGCTTGCCA 60.179 50.000 0.00 0.00 0.00 4.92
992 1028 0.179000 AGCCCAGATCCGCTAAACAG 59.821 55.000 0.00 0.00 32.26 3.16
993 1029 0.815615 GCCCAGATCCGCTAAACAGG 60.816 60.000 0.00 0.00 0.00 4.00
996 1032 1.412710 CCAGATCCGCTAAACAGGCTA 59.587 52.381 0.00 0.00 0.00 3.93
1005 1063 1.672881 CTAAACAGGCTAGCCATGCAC 59.327 52.381 34.70 7.45 38.92 4.57
1012 1070 1.665916 CTAGCCATGCACCCGATCG 60.666 63.158 8.51 8.51 0.00 3.69
1063 1126 2.941720 GAGAGAGAACCCAACATGCATC 59.058 50.000 0.00 0.00 0.00 3.91
1064 1127 1.667724 GAGAGAACCCAACATGCATCG 59.332 52.381 0.00 0.00 0.00 3.84
1117 1180 1.048160 CCTGCTTCTCCTCCTCCTCC 61.048 65.000 0.00 0.00 0.00 4.30
1118 1181 0.032217 CTGCTTCTCCTCCTCCTCCT 60.032 60.000 0.00 0.00 0.00 3.69
1119 1182 0.032615 TGCTTCTCCTCCTCCTCCTC 60.033 60.000 0.00 0.00 0.00 3.71
1121 1184 0.105709 CTTCTCCTCCTCCTCCTCCC 60.106 65.000 0.00 0.00 0.00 4.30
1132 1195 1.834822 CTCCTCCCGGTGATCCTCC 60.835 68.421 0.00 0.00 0.00 4.30
1897 1969 0.755079 CATCCGGAGCTTCATCCTCA 59.245 55.000 11.34 0.00 37.20 3.86
2169 2241 0.837272 CGGTGACCATACCCAAGGAT 59.163 55.000 1.11 0.00 37.44 3.24
2236 2308 3.787001 CGGAGGAGGAGGTTGCCC 61.787 72.222 0.00 0.00 0.00 5.36
2396 2468 2.340078 GCGCGCTATGGAGGATGA 59.660 61.111 26.67 0.00 0.00 2.92
2418 2490 4.155733 CCGGAGGCCATGTACGCA 62.156 66.667 5.01 0.00 46.14 5.24
2489 2561 2.036571 TCGCAAGCCTGTGATGCAG 61.037 57.895 0.00 0.00 44.63 4.41
2516 2588 6.835488 AGATGTACCAAAATGATAAGTGCCAT 59.165 34.615 0.00 0.00 0.00 4.40
2576 2649 7.571025 TGATGTTGCATATATAGATCAGCCAT 58.429 34.615 0.00 0.00 0.00 4.40
2582 2655 7.215085 TGCATATATAGATCAGCCATGACATC 58.785 38.462 0.00 0.00 38.57 3.06
2643 2722 3.859386 GGCAAAGATTTATGCTCGGTTTG 59.141 43.478 0.00 0.00 42.20 2.93
2701 2781 5.722263 TCGGCAAACATGATGAATGAAAAT 58.278 33.333 0.00 0.00 38.72 1.82
2716 2799 7.448420 TGAATGAAAATAAAAATGAGGTGCCA 58.552 30.769 0.00 0.00 0.00 4.92
2737 2820 1.535202 GGGGGAAACATGGTGGCAA 60.535 57.895 0.00 0.00 0.00 4.52
2765 2848 1.131883 GAAGAAGGCGTAGTAGCACGA 59.868 52.381 0.00 0.00 44.69 4.35
2797 2885 3.814615 CTGGCCACGGGGATCATCG 62.815 68.421 8.67 0.00 35.59 3.84
2809 2897 0.315251 GATCATCGCGGAGGTCATGA 59.685 55.000 6.13 7.38 0.00 3.07
2813 2901 0.103208 ATCGCGGAGGTCATGAAGAC 59.897 55.000 6.13 0.00 46.83 3.01
2829 2917 3.695060 TGAAGACGTCCTATCTCCAAGTC 59.305 47.826 13.01 0.00 0.00 3.01
2881 3019 2.614057 GCTTTGCAGTGTAACACTCAGT 59.386 45.455 0.00 0.00 43.43 3.41
2895 3033 3.243771 ACACTCAGTGAAGTCTTTACCGG 60.244 47.826 13.14 0.00 36.96 5.28
3011 3153 7.170658 GCAACAACTTGCCTTGTTATTAATTCA 59.829 33.333 0.00 0.00 46.27 2.57
3017 3159 9.243105 ACTTGCCTTGTTATTAATTCATACAGT 57.757 29.630 0.00 0.00 0.00 3.55
3097 3239 1.248101 TGCTAGCTCACTACACGGCA 61.248 55.000 17.23 0.00 0.00 5.69
3192 3375 7.505585 CAGGAATAAGATAGGAGAGAACTCTGT 59.494 40.741 9.16 0.00 40.61 3.41
3194 3377 9.010029 GGAATAAGATAGGAGAGAACTCTGTAG 57.990 40.741 9.16 0.00 40.61 2.74
3195 3378 9.569122 GAATAAGATAGGAGAGAACTCTGTAGT 57.431 37.037 9.16 0.00 40.61 2.73
3211 3394 8.472007 ACTCTGTAGTTCAGGAATAAGATAGG 57.528 38.462 0.00 0.00 43.76 2.57
3212 3395 8.282982 ACTCTGTAGTTCAGGAATAAGATAGGA 58.717 37.037 0.00 0.00 43.76 2.94
3213 3396 8.698973 TCTGTAGTTCAGGAATAAGATAGGAG 57.301 38.462 0.00 0.00 43.76 3.69
3214 3397 8.503573 TCTGTAGTTCAGGAATAAGATAGGAGA 58.496 37.037 0.00 0.00 43.76 3.71
3215 3398 8.466617 TGTAGTTCAGGAATAAGATAGGAGAC 57.533 38.462 0.00 0.00 0.00 3.36
3216 3399 8.059461 TGTAGTTCAGGAATAAGATAGGAGACA 58.941 37.037 0.00 0.00 0.00 3.41
3217 3400 7.979786 AGTTCAGGAATAAGATAGGAGACAA 57.020 36.000 0.00 0.00 0.00 3.18
3218 3401 7.787028 AGTTCAGGAATAAGATAGGAGACAAC 58.213 38.462 0.00 0.00 0.00 3.32
3219 3402 7.621683 AGTTCAGGAATAAGATAGGAGACAACT 59.378 37.037 0.00 0.00 0.00 3.16
3220 3403 7.589958 TCAGGAATAAGATAGGAGACAACTC 57.410 40.000 0.00 0.00 41.94 3.01
3221 3404 7.358263 TCAGGAATAAGATAGGAGACAACTCT 58.642 38.462 0.00 0.00 42.28 3.24
3222 3405 7.286546 TCAGGAATAAGATAGGAGACAACTCTG 59.713 40.741 0.00 0.00 42.28 3.35
3223 3406 7.069331 CAGGAATAAGATAGGAGACAACTCTGT 59.931 40.741 0.00 0.00 42.28 3.41
3235 3418 4.890581 AGACAACTCTGTGTAGTGAGTTCT 59.109 41.667 5.53 0.00 46.70 3.01
3236 3419 5.009210 AGACAACTCTGTGTAGTGAGTTCTC 59.991 44.000 5.53 4.67 46.70 2.87
3237 3420 4.890581 ACAACTCTGTGTAGTGAGTTCTCT 59.109 41.667 5.53 0.00 46.70 3.10
3238 3421 5.009210 ACAACTCTGTGTAGTGAGTTCTCTC 59.991 44.000 5.53 0.00 46.70 3.20
3241 3424 5.013287 ACTCTGTGTAGTGAGTTCTCTCCTA 59.987 44.000 1.53 0.00 40.21 2.94
3242 3425 6.068461 TCTGTGTAGTGAGTTCTCTCCTAT 57.932 41.667 1.53 0.00 39.75 2.57
3243 3426 6.116806 TCTGTGTAGTGAGTTCTCTCCTATC 58.883 44.000 1.53 2.06 39.75 2.08
3244 3427 6.068461 TGTGTAGTGAGTTCTCTCCTATCT 57.932 41.667 1.53 0.00 39.75 1.98
3245 3428 6.486056 TGTGTAGTGAGTTCTCTCCTATCTT 58.514 40.000 1.53 0.00 39.75 2.40
3246 3429 7.631007 TGTGTAGTGAGTTCTCTCCTATCTTA 58.369 38.462 1.53 0.00 39.75 2.10
3247 3430 8.275758 TGTGTAGTGAGTTCTCTCCTATCTTAT 58.724 37.037 1.53 0.00 39.75 1.73
3248 3431 9.127277 GTGTAGTGAGTTCTCTCCTATCTTATT 57.873 37.037 1.53 0.00 39.75 1.40
3249 3432 9.344772 TGTAGTGAGTTCTCTCCTATCTTATTC 57.655 37.037 1.53 0.00 39.75 1.75
3251 3434 7.591821 AGTGAGTTCTCTCCTATCTTATTCCT 58.408 38.462 1.53 0.00 39.75 3.36
3252 3435 7.505585 AGTGAGTTCTCTCCTATCTTATTCCTG 59.494 40.741 1.53 0.00 39.75 3.86
3253 3436 7.504238 GTGAGTTCTCTCCTATCTTATTCCTGA 59.496 40.741 1.53 0.00 39.75 3.86
3254 3437 8.061920 TGAGTTCTCTCCTATCTTATTCCTGAA 58.938 37.037 1.53 0.00 39.75 3.02
3258 3458 8.927675 TCTCTCCTATCTTATTCCTGAACTAC 57.072 38.462 0.00 0.00 0.00 2.73
3315 3517 8.677148 AATTGTGATAGGAATACTTTATGCGT 57.323 30.769 0.00 0.00 0.00 5.24
3344 3546 6.032251 GTCAAGAGTAGACGTTCGATTTGTAC 59.968 42.308 0.00 0.00 0.00 2.90
3374 3576 3.536498 CTTTGGGACACGTTGGCGC 62.536 63.158 0.00 0.00 39.29 6.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.352225 GCTACGGCCATGTAGAGATCAG 60.352 54.545 18.83 0.00 43.65 2.90
4 5 1.613925 GCTACGGCCATGTAGAGATCA 59.386 52.381 18.83 0.00 43.65 2.92
5 6 2.355717 GCTACGGCCATGTAGAGATC 57.644 55.000 18.83 0.99 43.65 2.75
17 18 0.390209 TTTAACGGACAGGCTACGGC 60.390 55.000 9.65 0.00 37.82 5.68
18 19 2.304751 ATTTAACGGACAGGCTACGG 57.695 50.000 9.65 4.22 0.00 4.02
19 20 2.793232 GCTATTTAACGGACAGGCTACG 59.207 50.000 4.23 4.23 0.00 3.51
22 23 1.557832 TGGCTATTTAACGGACAGGCT 59.442 47.619 0.00 0.00 33.30 4.58
23 24 2.032680 TGGCTATTTAACGGACAGGC 57.967 50.000 0.00 0.00 0.00 4.85
24 25 3.126343 GTGTTGGCTATTTAACGGACAGG 59.874 47.826 0.00 0.00 0.00 4.00
28 29 2.737783 CGTGTGTTGGCTATTTAACGGA 59.262 45.455 0.00 0.00 0.00 4.69
29 30 2.481185 ACGTGTGTTGGCTATTTAACGG 59.519 45.455 0.00 0.00 34.28 4.44
30 31 3.799137 ACGTGTGTTGGCTATTTAACG 57.201 42.857 0.00 0.00 35.98 3.18
31 32 4.214758 AGGAACGTGTGTTGGCTATTTAAC 59.785 41.667 0.00 0.00 38.78 2.01
32 33 4.391155 AGGAACGTGTGTTGGCTATTTAA 58.609 39.130 0.00 0.00 38.78 1.52
33 34 4.010667 AGGAACGTGTGTTGGCTATTTA 57.989 40.909 0.00 0.00 38.78 1.40
35 36 2.561478 AGGAACGTGTGTTGGCTATT 57.439 45.000 0.00 0.00 38.78 1.73
37 38 1.414919 AGAAGGAACGTGTGTTGGCTA 59.585 47.619 0.00 0.00 38.78 3.93
38 39 0.180406 AGAAGGAACGTGTGTTGGCT 59.820 50.000 0.00 0.00 38.78 4.75
40 41 3.724374 TCTTAGAAGGAACGTGTGTTGG 58.276 45.455 0.00 0.00 38.78 3.77
41 42 4.211374 CCTTCTTAGAAGGAACGTGTGTTG 59.789 45.833 31.34 3.93 38.78 3.33
42 43 4.100498 TCCTTCTTAGAAGGAACGTGTGTT 59.900 41.667 33.96 0.00 43.05 3.32
43 44 3.640029 TCCTTCTTAGAAGGAACGTGTGT 59.360 43.478 33.96 0.00 43.05 3.72
44 45 4.252971 TCCTTCTTAGAAGGAACGTGTG 57.747 45.455 33.96 11.69 43.05 3.82
52 53 6.911511 CGTCTACGTAATTCCTTCTTAGAAGG 59.088 42.308 29.73 29.73 35.23 3.46
56 57 4.974888 GGCGTCTACGTAATTCCTTCTTAG 59.025 45.833 4.24 0.00 42.22 2.18
57 58 4.398988 TGGCGTCTACGTAATTCCTTCTTA 59.601 41.667 4.24 0.00 42.22 2.10
58 59 3.194116 TGGCGTCTACGTAATTCCTTCTT 59.806 43.478 4.24 0.00 42.22 2.52
61 62 2.494870 AGTGGCGTCTACGTAATTCCTT 59.505 45.455 4.24 0.00 42.22 3.36
63 64 2.573941 AGTGGCGTCTACGTAATTCC 57.426 50.000 4.24 0.00 42.22 3.01
65 66 5.252969 TGATTAGTGGCGTCTACGTAATT 57.747 39.130 4.24 0.00 42.22 1.40
66 67 4.906065 TGATTAGTGGCGTCTACGTAAT 57.094 40.909 4.24 0.70 42.22 1.89
67 68 4.414852 GTTGATTAGTGGCGTCTACGTAA 58.585 43.478 4.24 0.00 42.22 3.18
68 69 3.181497 GGTTGATTAGTGGCGTCTACGTA 60.181 47.826 4.24 0.00 42.22 3.57
69 70 2.416431 GGTTGATTAGTGGCGTCTACGT 60.416 50.000 4.24 0.00 42.22 3.57
71 72 3.187700 CTGGTTGATTAGTGGCGTCTAC 58.812 50.000 0.00 0.00 0.00 2.59
72 73 2.167693 CCTGGTTGATTAGTGGCGTCTA 59.832 50.000 0.00 0.00 0.00 2.59
73 74 1.066143 CCTGGTTGATTAGTGGCGTCT 60.066 52.381 0.00 0.00 0.00 4.18
74 75 1.066430 TCCTGGTTGATTAGTGGCGTC 60.066 52.381 0.00 0.00 0.00 5.19
75 76 0.981183 TCCTGGTTGATTAGTGGCGT 59.019 50.000 0.00 0.00 0.00 5.68
76 77 2.332063 ATCCTGGTTGATTAGTGGCG 57.668 50.000 0.00 0.00 0.00 5.69
77 78 4.781934 ACTTATCCTGGTTGATTAGTGGC 58.218 43.478 0.00 0.00 34.35 5.01
79 80 5.520288 CACGACTTATCCTGGTTGATTAGTG 59.480 44.000 0.00 0.00 35.42 2.74
80 81 5.661458 CACGACTTATCCTGGTTGATTAGT 58.339 41.667 0.00 0.00 37.33 2.24
81 82 4.508124 GCACGACTTATCCTGGTTGATTAG 59.492 45.833 0.00 0.00 0.00 1.73
84 85 2.420129 GGCACGACTTATCCTGGTTGAT 60.420 50.000 0.00 0.00 0.00 2.57
85 86 1.066430 GGCACGACTTATCCTGGTTGA 60.066 52.381 0.00 0.00 0.00 3.18
87 88 1.066143 CAGGCACGACTTATCCTGGTT 60.066 52.381 0.00 0.00 41.71 3.67
89 90 0.824109 TCAGGCACGACTTATCCTGG 59.176 55.000 7.21 0.00 44.62 4.45
90 91 1.478510 AGTCAGGCACGACTTATCCTG 59.521 52.381 3.96 0.92 43.84 3.86
91 92 1.853963 AGTCAGGCACGACTTATCCT 58.146 50.000 3.96 0.00 43.84 3.24
98 99 0.601558 TAGTCCAAGTCAGGCACGAC 59.398 55.000 0.00 0.00 36.08 4.34
99 100 1.272490 CTTAGTCCAAGTCAGGCACGA 59.728 52.381 0.00 0.00 0.00 4.35
100 101 1.272490 TCTTAGTCCAAGTCAGGCACG 59.728 52.381 0.00 0.00 35.58 5.34
101 102 3.402628 TTCTTAGTCCAAGTCAGGCAC 57.597 47.619 0.00 0.00 35.58 5.01
102 103 3.646162 TCTTTCTTAGTCCAAGTCAGGCA 59.354 43.478 0.00 0.00 35.58 4.75
103 104 4.273148 TCTTTCTTAGTCCAAGTCAGGC 57.727 45.455 0.00 0.00 35.58 4.85
104 105 6.768381 AGTTTTCTTTCTTAGTCCAAGTCAGG 59.232 38.462 0.00 0.00 35.58 3.86
105 106 7.793927 AGTTTTCTTTCTTAGTCCAAGTCAG 57.206 36.000 0.00 0.00 35.58 3.51
106 107 9.675464 TTTAGTTTTCTTTCTTAGTCCAAGTCA 57.325 29.630 0.00 0.00 35.58 3.41
108 109 9.901172 TCTTTAGTTTTCTTTCTTAGTCCAAGT 57.099 29.630 0.00 0.00 35.58 3.16
123 124 9.063615 TGGTCAGTTAGGATTTCTTTAGTTTTC 57.936 33.333 0.00 0.00 0.00 2.29
124 125 8.990163 TGGTCAGTTAGGATTTCTTTAGTTTT 57.010 30.769 0.00 0.00 0.00 2.43
126 127 8.606830 AGATGGTCAGTTAGGATTTCTTTAGTT 58.393 33.333 0.00 0.00 0.00 2.24
130 131 9.232473 GTTTAGATGGTCAGTTAGGATTTCTTT 57.768 33.333 0.00 0.00 0.00 2.52
131 132 7.829706 GGTTTAGATGGTCAGTTAGGATTTCTT 59.170 37.037 0.00 0.00 0.00 2.52
132 133 7.339482 GGTTTAGATGGTCAGTTAGGATTTCT 58.661 38.462 0.00 0.00 0.00 2.52
133 134 6.258068 CGGTTTAGATGGTCAGTTAGGATTTC 59.742 42.308 0.00 0.00 0.00 2.17
135 136 5.189145 ACGGTTTAGATGGTCAGTTAGGATT 59.811 40.000 0.00 0.00 0.00 3.01
136 137 4.715297 ACGGTTTAGATGGTCAGTTAGGAT 59.285 41.667 0.00 0.00 0.00 3.24
138 139 4.467198 ACGGTTTAGATGGTCAGTTAGG 57.533 45.455 0.00 0.00 0.00 2.69
139 140 6.628185 AGTTACGGTTTAGATGGTCAGTTAG 58.372 40.000 0.00 0.00 0.00 2.34
141 142 5.479124 AGTTACGGTTTAGATGGTCAGTT 57.521 39.130 0.00 0.00 0.00 3.16
142 143 5.713861 AGTAGTTACGGTTTAGATGGTCAGT 59.286 40.000 0.00 0.00 0.00 3.41
144 145 6.886459 AGTAGTAGTTACGGTTTAGATGGTCA 59.114 38.462 0.00 0.00 37.35 4.02
146 147 8.986929 ATAGTAGTAGTTACGGTTTAGATGGT 57.013 34.615 0.00 0.00 37.35 3.55
149 150 9.618890 TGTGATAGTAGTAGTTACGGTTTAGAT 57.381 33.333 0.00 0.00 37.35 1.98
150 151 8.883731 GTGTGATAGTAGTAGTTACGGTTTAGA 58.116 37.037 0.00 0.00 37.35 2.10
152 153 8.560355 TGTGTGATAGTAGTAGTTACGGTTTA 57.440 34.615 0.00 0.00 37.35 2.01
154 155 7.478322 CATGTGTGATAGTAGTAGTTACGGTT 58.522 38.462 0.00 0.00 37.35 4.44
155 156 6.459298 GCATGTGTGATAGTAGTAGTTACGGT 60.459 42.308 0.00 0.00 37.35 4.83
157 158 6.492254 TGCATGTGTGATAGTAGTAGTTACG 58.508 40.000 0.00 0.00 37.35 3.18
158 159 7.096023 GCATGCATGTGTGATAGTAGTAGTTAC 60.096 40.741 26.79 0.46 0.00 2.50
159 160 6.923508 GCATGCATGTGTGATAGTAGTAGTTA 59.076 38.462 26.79 0.00 0.00 2.24
161 162 5.292765 GCATGCATGTGTGATAGTAGTAGT 58.707 41.667 26.79 0.00 0.00 2.73
162 163 4.687948 GGCATGCATGTGTGATAGTAGTAG 59.312 45.833 26.79 0.00 0.00 2.57
164 165 3.135348 AGGCATGCATGTGTGATAGTAGT 59.865 43.478 26.79 0.00 0.00 2.73
165 166 3.736720 AGGCATGCATGTGTGATAGTAG 58.263 45.455 26.79 0.00 0.00 2.57
166 167 3.843893 AGGCATGCATGTGTGATAGTA 57.156 42.857 26.79 0.00 0.00 1.82
167 168 2.723322 AGGCATGCATGTGTGATAGT 57.277 45.000 26.79 1.57 0.00 2.12
169 170 3.354467 TGAAAGGCATGCATGTGTGATA 58.646 40.909 26.79 8.39 0.00 2.15
171 172 1.618487 TGAAAGGCATGCATGTGTGA 58.382 45.000 26.79 5.02 0.00 3.58
172 173 2.665649 ATGAAAGGCATGCATGTGTG 57.334 45.000 26.79 4.46 35.42 3.82
173 174 3.007074 TGAAATGAAAGGCATGCATGTGT 59.993 39.130 26.79 12.41 37.28 3.72
174 175 3.591023 TGAAATGAAAGGCATGCATGTG 58.409 40.909 26.79 5.68 37.28 3.21
198 199 0.042188 CGAACAAGGAGTGCACGTTG 60.042 55.000 21.09 21.09 40.16 4.10
201 202 0.439985 CATCGAACAAGGAGTGCACG 59.560 55.000 12.01 0.00 0.00 5.34
202 203 0.798776 CCATCGAACAAGGAGTGCAC 59.201 55.000 9.40 9.40 0.00 4.57
203 204 0.955428 GCCATCGAACAAGGAGTGCA 60.955 55.000 0.00 0.00 0.00 4.57
204 205 0.955428 TGCCATCGAACAAGGAGTGC 60.955 55.000 0.00 0.00 0.00 4.40
205 206 1.522668 TTGCCATCGAACAAGGAGTG 58.477 50.000 0.00 0.00 0.00 3.51
206 207 2.496899 ATTGCCATCGAACAAGGAGT 57.503 45.000 0.00 0.00 0.00 3.85
208 209 5.713792 TTTTAATTGCCATCGAACAAGGA 57.286 34.783 0.00 0.00 0.00 3.36
211 212 8.713271 GGTAAATTTTTAATTGCCATCGAACAA 58.287 29.630 0.00 0.00 32.28 2.83
214 215 8.833231 TTGGTAAATTTTTAATTGCCATCGAA 57.167 26.923 0.00 0.00 40.32 3.71
215 216 9.092876 GATTGGTAAATTTTTAATTGCCATCGA 57.907 29.630 0.00 0.00 40.32 3.59
216 217 9.097257 AGATTGGTAAATTTTTAATTGCCATCG 57.903 29.630 0.00 0.00 40.32 3.84
227 228 8.028938 CGACTGGATCAAGATTGGTAAATTTTT 58.971 33.333 3.42 0.00 0.00 1.94
228 229 7.362920 CCGACTGGATCAAGATTGGTAAATTTT 60.363 37.037 3.42 0.00 37.49 1.82
230 231 5.590259 CCGACTGGATCAAGATTGGTAAATT 59.410 40.000 3.42 0.00 37.49 1.82
233 234 3.118408 CCCGACTGGATCAAGATTGGTAA 60.118 47.826 3.42 0.00 37.49 2.85
236 237 1.210478 ACCCGACTGGATCAAGATTGG 59.790 52.381 3.42 3.22 37.49 3.16
237 238 2.283298 CACCCGACTGGATCAAGATTG 58.717 52.381 3.42 0.00 37.49 2.67
238 239 1.210478 CCACCCGACTGGATCAAGATT 59.790 52.381 3.42 0.00 37.49 2.40
239 240 0.833287 CCACCCGACTGGATCAAGAT 59.167 55.000 3.42 0.00 37.49 2.40
240 241 0.252057 TCCACCCGACTGGATCAAGA 60.252 55.000 3.42 0.00 35.23 3.02
241 242 0.176680 CTCCACCCGACTGGATCAAG 59.823 60.000 0.00 0.00 39.72 3.02
242 243 0.544357 ACTCCACCCGACTGGATCAA 60.544 55.000 0.00 0.00 39.72 2.57
243 244 0.544357 AACTCCACCCGACTGGATCA 60.544 55.000 0.00 0.00 39.72 2.92
244 245 0.175989 GAACTCCACCCGACTGGATC 59.824 60.000 1.87 0.00 39.72 3.36
245 246 0.252284 AGAACTCCACCCGACTGGAT 60.252 55.000 1.87 0.00 39.72 3.41
246 247 1.155390 AGAACTCCACCCGACTGGA 59.845 57.895 1.55 1.55 38.05 3.86
247 248 1.185618 TCAGAACTCCACCCGACTGG 61.186 60.000 0.00 0.00 41.37 4.00
250 251 0.391597 TGTTCAGAACTCCACCCGAC 59.608 55.000 14.51 0.00 0.00 4.79
251 252 1.348064 ATGTTCAGAACTCCACCCGA 58.652 50.000 14.51 0.00 0.00 5.14
253 254 2.681097 GCCTATGTTCAGAACTCCACCC 60.681 54.545 14.51 0.00 0.00 4.61
254 255 2.027192 TGCCTATGTTCAGAACTCCACC 60.027 50.000 14.51 1.68 0.00 4.61
255 256 3.265791 CTGCCTATGTTCAGAACTCCAC 58.734 50.000 14.51 1.67 32.26 4.02
256 257 2.355108 GCTGCCTATGTTCAGAACTCCA 60.355 50.000 14.51 3.94 32.26 3.86
257 258 2.284190 GCTGCCTATGTTCAGAACTCC 58.716 52.381 14.51 0.00 32.26 3.85
258 259 2.675348 GTGCTGCCTATGTTCAGAACTC 59.325 50.000 14.51 0.19 36.24 3.01
259 260 2.616510 GGTGCTGCCTATGTTCAGAACT 60.617 50.000 14.51 3.10 38.59 3.01
260 261 1.740025 GGTGCTGCCTATGTTCAGAAC 59.260 52.381 6.32 6.32 37.98 3.01
262 263 3.861341 GGTGCTGCCTATGTTCAGA 57.139 52.632 0.00 0.00 32.26 3.27
283 284 2.028112 TGATCAGGAACCAGAACCGAAG 60.028 50.000 0.00 0.00 0.00 3.79
284 285 1.974957 TGATCAGGAACCAGAACCGAA 59.025 47.619 0.00 0.00 0.00 4.30
285 286 1.639722 TGATCAGGAACCAGAACCGA 58.360 50.000 0.00 0.00 0.00 4.69
287 288 3.140325 TGTTGATCAGGAACCAGAACC 57.860 47.619 0.00 0.00 0.00 3.62
288 289 3.372206 CGATGTTGATCAGGAACCAGAAC 59.628 47.826 0.00 0.00 0.00 3.01
289 290 3.599343 CGATGTTGATCAGGAACCAGAA 58.401 45.455 0.00 0.00 0.00 3.02
290 291 2.093500 CCGATGTTGATCAGGAACCAGA 60.093 50.000 0.00 0.00 0.00 3.86
291 292 2.283298 CCGATGTTGATCAGGAACCAG 58.717 52.381 0.00 0.00 0.00 4.00
292 293 1.065491 CCCGATGTTGATCAGGAACCA 60.065 52.381 0.00 0.00 28.32 3.67
293 294 1.668419 CCCGATGTTGATCAGGAACC 58.332 55.000 0.00 0.00 28.32 3.62
294 295 1.017387 GCCCGATGTTGATCAGGAAC 58.983 55.000 0.00 0.00 28.32 3.62
295 296 0.461870 CGCCCGATGTTGATCAGGAA 60.462 55.000 0.00 0.00 28.32 3.36
296 297 1.143838 CGCCCGATGTTGATCAGGA 59.856 57.895 0.00 0.00 28.32 3.86
297 298 1.143838 TCGCCCGATGTTGATCAGG 59.856 57.895 0.00 0.00 0.00 3.86
298 299 1.154205 GGTCGCCCGATGTTGATCAG 61.154 60.000 0.00 0.00 0.00 2.90
300 301 1.144057 AGGTCGCCCGATGTTGATC 59.856 57.895 0.00 0.00 35.12 2.92
303 304 2.819595 CCAGGTCGCCCGATGTTG 60.820 66.667 0.00 0.00 35.12 3.33
304 305 4.096003 CCCAGGTCGCCCGATGTT 62.096 66.667 0.00 0.00 35.12 2.71
312 313 2.200337 AACAAAAGGCCCAGGTCGC 61.200 57.895 0.00 0.00 0.00 5.19
313 314 1.106944 ACAACAAAAGGCCCAGGTCG 61.107 55.000 0.00 0.00 0.00 4.79
314 315 1.989706 TACAACAAAAGGCCCAGGTC 58.010 50.000 0.00 0.00 0.00 3.85
316 317 3.694566 GAGTATACAACAAAAGGCCCAGG 59.305 47.826 5.50 0.00 0.00 4.45
317 318 3.694566 GGAGTATACAACAAAAGGCCCAG 59.305 47.826 5.50 0.00 0.00 4.45
318 319 3.332485 AGGAGTATACAACAAAAGGCCCA 59.668 43.478 5.50 0.00 0.00 5.36
319 320 3.945921 GAGGAGTATACAACAAAAGGCCC 59.054 47.826 5.50 0.00 0.00 5.80
320 321 4.844884 AGAGGAGTATACAACAAAAGGCC 58.155 43.478 5.50 0.00 0.00 5.19
321 322 6.017852 GCATAGAGGAGTATACAACAAAAGGC 60.018 42.308 5.50 0.00 0.00 4.35
322 323 7.047891 TGCATAGAGGAGTATACAACAAAAGG 58.952 38.462 5.50 0.00 0.00 3.11
323 324 8.668510 ATGCATAGAGGAGTATACAACAAAAG 57.331 34.615 5.50 0.00 0.00 2.27
324 325 8.892723 CAATGCATAGAGGAGTATACAACAAAA 58.107 33.333 0.00 0.00 0.00 2.44
325 326 7.498900 CCAATGCATAGAGGAGTATACAACAAA 59.501 37.037 0.00 0.00 0.00 2.83
326 327 6.992123 CCAATGCATAGAGGAGTATACAACAA 59.008 38.462 0.00 0.00 0.00 2.83
327 328 6.099701 ACCAATGCATAGAGGAGTATACAACA 59.900 38.462 16.91 0.00 0.00 3.33
329 330 6.747414 ACCAATGCATAGAGGAGTATACAA 57.253 37.500 16.91 0.00 0.00 2.41
332 333 7.840931 CATGTACCAATGCATAGAGGAGTATA 58.159 38.462 16.91 5.17 28.86 1.47
334 335 6.101650 CATGTACCAATGCATAGAGGAGTA 57.898 41.667 16.91 3.78 28.86 2.59
345 346 5.749596 TTATACAGTGCATGTACCAATGC 57.250 39.130 10.59 10.46 47.00 3.56
346 347 7.383843 TCGTATTATACAGTGCATGTACCAATG 59.616 37.037 10.59 5.28 47.00 2.82
347 348 7.438564 TCGTATTATACAGTGCATGTACCAAT 58.561 34.615 10.59 12.94 47.00 3.16
349 350 6.394025 TCGTATTATACAGTGCATGTACCA 57.606 37.500 10.59 0.00 47.00 3.25
354 355 6.640907 TGCTACTTCGTATTATACAGTGCATG 59.359 38.462 3.16 0.00 0.00 4.06
356 357 6.139048 TGCTACTTCGTATTATACAGTGCA 57.861 37.500 3.16 8.68 0.00 4.57
357 358 6.641314 ACATGCTACTTCGTATTATACAGTGC 59.359 38.462 3.16 6.71 0.00 4.40
358 359 9.114965 GTACATGCTACTTCGTATTATACAGTG 57.885 37.037 3.16 0.00 0.00 3.66
359 360 9.064706 AGTACATGCTACTTCGTATTATACAGT 57.935 33.333 3.16 2.43 0.00 3.55
366 367 9.680315 GAGAATTAGTACATGCTACTTCGTATT 57.320 33.333 11.53 7.99 36.42 1.89
368 369 8.447924 AGAGAATTAGTACATGCTACTTCGTA 57.552 34.615 11.53 0.00 36.42 3.43
370 371 8.635877 AAAGAGAATTAGTACATGCTACTTCG 57.364 34.615 11.53 0.00 36.42 3.79
371 372 9.587772 TGAAAGAGAATTAGTACATGCTACTTC 57.412 33.333 11.53 7.47 33.51 3.01
377 378 9.638300 CGTATTTGAAAGAGAATTAGTACATGC 57.362 33.333 0.00 0.00 0.00 4.06
382 383 7.709613 GCTCCCGTATTTGAAAGAGAATTAGTA 59.290 37.037 0.00 0.00 0.00 1.82
383 384 6.539103 GCTCCCGTATTTGAAAGAGAATTAGT 59.461 38.462 0.00 0.00 0.00 2.24
384 385 6.538742 TGCTCCCGTATTTGAAAGAGAATTAG 59.461 38.462 0.00 0.00 0.00 1.73
385 386 6.411376 TGCTCCCGTATTTGAAAGAGAATTA 58.589 36.000 0.00 0.00 0.00 1.40
386 387 5.253330 TGCTCCCGTATTTGAAAGAGAATT 58.747 37.500 0.00 0.00 0.00 2.17
387 388 4.843728 TGCTCCCGTATTTGAAAGAGAAT 58.156 39.130 0.00 0.00 0.00 2.40
388 389 4.280436 TGCTCCCGTATTTGAAAGAGAA 57.720 40.909 0.00 0.00 0.00 2.87
389 390 3.973206 TGCTCCCGTATTTGAAAGAGA 57.027 42.857 0.00 0.00 0.00 3.10
390 391 5.106157 ACATTTGCTCCCGTATTTGAAAGAG 60.106 40.000 0.00 0.00 0.00 2.85
391 392 4.764823 ACATTTGCTCCCGTATTTGAAAGA 59.235 37.500 0.00 0.00 0.00 2.52
392 393 5.059404 ACATTTGCTCCCGTATTTGAAAG 57.941 39.130 0.00 0.00 0.00 2.62
393 394 5.124776 CCTACATTTGCTCCCGTATTTGAAA 59.875 40.000 0.00 0.00 0.00 2.69
394 395 4.638421 CCTACATTTGCTCCCGTATTTGAA 59.362 41.667 0.00 0.00 0.00 2.69
395 396 4.196193 CCTACATTTGCTCCCGTATTTGA 58.804 43.478 0.00 0.00 0.00 2.69
396 397 3.945285 ACCTACATTTGCTCCCGTATTTG 59.055 43.478 0.00 0.00 0.00 2.32
400 401 1.483415 GGACCTACATTTGCTCCCGTA 59.517 52.381 0.00 0.00 0.00 4.02
402 403 0.251916 TGGACCTACATTTGCTCCCG 59.748 55.000 0.00 0.00 0.00 5.14
405 406 3.821033 ACTTTGTGGACCTACATTTGCTC 59.179 43.478 0.00 0.00 0.00 4.26
406 407 3.832527 ACTTTGTGGACCTACATTTGCT 58.167 40.909 0.00 0.00 0.00 3.91
410 411 3.813166 CGTCAACTTTGTGGACCTACATT 59.187 43.478 0.00 0.00 33.24 2.71
411 412 3.181458 ACGTCAACTTTGTGGACCTACAT 60.181 43.478 0.00 0.00 33.24 2.29
412 413 2.168936 ACGTCAACTTTGTGGACCTACA 59.831 45.455 0.00 0.00 33.24 2.74
414 415 4.669206 TTACGTCAACTTTGTGGACCTA 57.331 40.909 0.00 0.00 33.24 3.08
415 416 3.547054 TTACGTCAACTTTGTGGACCT 57.453 42.857 0.00 0.00 33.24 3.85
417 418 4.789629 GTGTTTTACGTCAACTTTGTGGAC 59.210 41.667 10.87 0.00 33.48 4.02
418 419 4.142643 GGTGTTTTACGTCAACTTTGTGGA 60.143 41.667 10.87 0.00 0.00 4.02
419 420 4.099824 GGTGTTTTACGTCAACTTTGTGG 58.900 43.478 10.87 0.00 0.00 4.17
420 421 4.724303 TGGTGTTTTACGTCAACTTTGTG 58.276 39.130 10.87 0.00 0.00 3.33
421 422 5.449451 GGATGGTGTTTTACGTCAACTTTGT 60.449 40.000 10.87 0.00 0.00 2.83
422 423 4.973663 GGATGGTGTTTTACGTCAACTTTG 59.026 41.667 10.87 0.00 0.00 2.77
424 425 4.457466 AGGATGGTGTTTTACGTCAACTT 58.543 39.130 10.87 0.00 0.00 2.66
425 426 4.081322 AGGATGGTGTTTTACGTCAACT 57.919 40.909 10.87 0.00 0.00 3.16
426 427 4.823790 AAGGATGGTGTTTTACGTCAAC 57.176 40.909 0.00 0.00 0.00 3.18
427 428 5.613329 AGTAAGGATGGTGTTTTACGTCAA 58.387 37.500 0.00 0.00 32.67 3.18
428 429 5.217978 AGTAAGGATGGTGTTTTACGTCA 57.782 39.130 0.00 0.00 32.67 4.35
429 430 5.930569 AGAAGTAAGGATGGTGTTTTACGTC 59.069 40.000 0.00 0.00 35.88 4.34
430 431 5.861727 AGAAGTAAGGATGGTGTTTTACGT 58.138 37.500 0.00 0.00 32.67 3.57
431 432 5.350640 GGAGAAGTAAGGATGGTGTTTTACG 59.649 44.000 0.00 0.00 32.67 3.18
432 433 6.235664 TGGAGAAGTAAGGATGGTGTTTTAC 58.764 40.000 0.00 0.00 0.00 2.01
433 434 6.442541 TGGAGAAGTAAGGATGGTGTTTTA 57.557 37.500 0.00 0.00 0.00 1.52
434 435 5.319043 TGGAGAAGTAAGGATGGTGTTTT 57.681 39.130 0.00 0.00 0.00 2.43
436 437 4.289672 ACATGGAGAAGTAAGGATGGTGTT 59.710 41.667 0.00 0.00 0.00 3.32
438 439 4.494091 ACATGGAGAAGTAAGGATGGTG 57.506 45.455 0.00 0.00 0.00 4.17
439 440 6.158695 ACAATACATGGAGAAGTAAGGATGGT 59.841 38.462 0.00 0.00 0.00 3.55
440 441 6.595682 ACAATACATGGAGAAGTAAGGATGG 58.404 40.000 0.00 0.00 0.00 3.51
441 442 8.400947 CAAACAATACATGGAGAAGTAAGGATG 58.599 37.037 0.00 0.00 0.00 3.51
442 443 7.067494 GCAAACAATACATGGAGAAGTAAGGAT 59.933 37.037 0.00 0.00 0.00 3.24
443 444 6.374333 GCAAACAATACATGGAGAAGTAAGGA 59.626 38.462 0.00 0.00 0.00 3.36
444 445 6.150976 TGCAAACAATACATGGAGAAGTAAGG 59.849 38.462 0.00 0.00 0.00 2.69
445 446 7.144722 TGCAAACAATACATGGAGAAGTAAG 57.855 36.000 0.00 0.00 0.00 2.34
446 447 7.701539 ATGCAAACAATACATGGAGAAGTAA 57.298 32.000 0.00 0.00 0.00 2.24
447 448 8.800370 TTATGCAAACAATACATGGAGAAGTA 57.200 30.769 0.00 0.00 0.00 2.24
448 449 7.701539 TTATGCAAACAATACATGGAGAAGT 57.298 32.000 0.00 0.00 0.00 3.01
449 450 8.984891 TTTTATGCAAACAATACATGGAGAAG 57.015 30.769 0.00 0.00 0.00 2.85
450 451 9.941325 ATTTTTATGCAAACAATACATGGAGAA 57.059 25.926 0.00 0.00 0.00 2.87
451 452 9.368674 CATTTTTATGCAAACAATACATGGAGA 57.631 29.630 0.00 0.00 0.00 3.71
454 455 9.153721 ACTCATTTTTATGCAAACAATACATGG 57.846 29.630 0.00 0.00 0.00 3.66
455 456 9.961266 CACTCATTTTTATGCAAACAATACATG 57.039 29.630 0.00 0.00 0.00 3.21
456 457 9.709495 ACACTCATTTTTATGCAAACAATACAT 57.291 25.926 0.00 0.00 0.00 2.29
457 458 9.539825 AACACTCATTTTTATGCAAACAATACA 57.460 25.926 0.00 0.00 0.00 2.29
459 460 9.979578 AGAACACTCATTTTTATGCAAACAATA 57.020 25.926 0.00 0.00 0.00 1.90
460 461 8.891671 AGAACACTCATTTTTATGCAAACAAT 57.108 26.923 0.00 0.00 0.00 2.71
462 463 6.636447 CGAGAACACTCATTTTTATGCAAACA 59.364 34.615 0.00 0.00 0.00 2.83
464 465 6.734137 ACGAGAACACTCATTTTTATGCAAA 58.266 32.000 0.00 0.00 0.00 3.68
466 467 5.700832 AGACGAGAACACTCATTTTTATGCA 59.299 36.000 0.00 0.00 0.00 3.96
467 468 6.017933 CAGACGAGAACACTCATTTTTATGC 58.982 40.000 0.00 0.00 0.00 3.14
468 469 7.121974 ACAGACGAGAACACTCATTTTTATG 57.878 36.000 0.00 0.00 0.00 1.90
469 470 7.730364 AACAGACGAGAACACTCATTTTTAT 57.270 32.000 0.00 0.00 0.00 1.40
470 471 8.068893 GTAACAGACGAGAACACTCATTTTTA 57.931 34.615 0.00 0.00 0.00 1.52
471 472 6.945072 GTAACAGACGAGAACACTCATTTTT 58.055 36.000 0.00 0.00 0.00 1.94
472 473 6.526566 GTAACAGACGAGAACACTCATTTT 57.473 37.500 0.00 0.00 0.00 1.82
490 491 0.664166 GGGCGTCTTCGTTCGTAACA 60.664 55.000 0.00 0.00 39.49 2.41
491 492 0.664166 TGGGCGTCTTCGTTCGTAAC 60.664 55.000 0.00 0.00 39.49 2.50
492 493 0.244450 ATGGGCGTCTTCGTTCGTAA 59.756 50.000 0.00 0.00 39.49 3.18
494 495 1.736645 CATGGGCGTCTTCGTTCGT 60.737 57.895 0.00 0.00 39.49 3.85
495 496 0.806102 ATCATGGGCGTCTTCGTTCG 60.806 55.000 0.00 0.00 39.49 3.95
496 497 2.218953 TATCATGGGCGTCTTCGTTC 57.781 50.000 0.00 0.00 39.49 3.95
497 498 2.684001 TTATCATGGGCGTCTTCGTT 57.316 45.000 0.00 0.00 39.49 3.85
499 500 3.362986 CGAATTTATCATGGGCGTCTTCG 60.363 47.826 0.00 0.00 40.37 3.79
501 502 3.541632 ACGAATTTATCATGGGCGTCTT 58.458 40.909 0.00 0.00 0.00 3.01
502 503 3.194005 ACGAATTTATCATGGGCGTCT 57.806 42.857 0.00 0.00 0.00 4.18
503 504 3.963383 AACGAATTTATCATGGGCGTC 57.037 42.857 0.00 0.00 0.00 5.19
505 506 6.241207 AGATTAACGAATTTATCATGGGCG 57.759 37.500 0.00 0.00 0.00 6.13
506 507 9.959749 TTTAAGATTAACGAATTTATCATGGGC 57.040 29.630 0.00 0.00 0.00 5.36
518 519 9.288124 TCGATACGACATTTTAAGATTAACGAA 57.712 29.630 0.00 0.00 0.00 3.85
519 520 8.839947 TCGATACGACATTTTAAGATTAACGA 57.160 30.769 0.00 0.00 0.00 3.85
537 538 4.500837 CCTCTGAAACATTGAGTCGATACG 59.499 45.833 0.00 0.00 0.00 3.06
539 540 5.410924 CACCTCTGAAACATTGAGTCGATA 58.589 41.667 0.00 0.00 0.00 2.92
541 542 3.554960 CCACCTCTGAAACATTGAGTCGA 60.555 47.826 0.00 0.00 0.00 4.20
542 543 2.738846 CCACCTCTGAAACATTGAGTCG 59.261 50.000 0.00 0.00 0.00 4.18
544 545 4.141390 ACTTCCACCTCTGAAACATTGAGT 60.141 41.667 0.00 0.00 0.00 3.41
545 546 4.214971 CACTTCCACCTCTGAAACATTGAG 59.785 45.833 0.00 0.00 0.00 3.02
546 547 4.136796 CACTTCCACCTCTGAAACATTGA 58.863 43.478 0.00 0.00 0.00 2.57
549 550 2.508526 GCACTTCCACCTCTGAAACAT 58.491 47.619 0.00 0.00 0.00 2.71
551 552 1.202818 AGGCACTTCCACCTCTGAAAC 60.203 52.381 0.00 0.00 37.29 2.78
552 553 1.140312 AGGCACTTCCACCTCTGAAA 58.860 50.000 0.00 0.00 37.29 2.69
553 554 1.623811 GTAGGCACTTCCACCTCTGAA 59.376 52.381 0.00 0.00 41.75 3.02
554 555 1.267121 GTAGGCACTTCCACCTCTGA 58.733 55.000 0.00 0.00 41.75 3.27
555 556 0.976641 TGTAGGCACTTCCACCTCTG 59.023 55.000 0.00 0.00 41.75 3.35
557 558 2.014068 GCATGTAGGCACTTCCACCTC 61.014 57.143 0.00 0.00 41.75 3.85
558 559 0.035056 GCATGTAGGCACTTCCACCT 60.035 55.000 0.00 0.00 41.75 4.00
559 560 1.369091 CGCATGTAGGCACTTCCACC 61.369 60.000 0.00 0.00 41.75 4.61
560 561 0.673644 ACGCATGTAGGCACTTCCAC 60.674 55.000 0.00 0.00 41.75 4.02
562 563 0.727398 GAACGCATGTAGGCACTTCC 59.273 55.000 0.00 0.00 41.75 3.46
563 564 1.438651 TGAACGCATGTAGGCACTTC 58.561 50.000 0.00 0.00 41.75 3.01
565 566 2.430694 TCTATGAACGCATGTAGGCACT 59.569 45.455 0.00 0.00 38.07 4.40
566 567 2.821546 TCTATGAACGCATGTAGGCAC 58.178 47.619 0.00 0.00 35.94 5.01
567 568 3.535280 TTCTATGAACGCATGTAGGCA 57.465 42.857 0.00 0.00 35.94 4.75
568 569 4.875544 TTTTCTATGAACGCATGTAGGC 57.124 40.909 0.00 0.00 35.94 3.93
569 570 8.365399 TCTAATTTTCTATGAACGCATGTAGG 57.635 34.615 0.00 0.00 35.94 3.18
570 571 9.249457 TCTCTAATTTTCTATGAACGCATGTAG 57.751 33.333 0.00 0.00 35.94 2.74
571 572 9.764363 ATCTCTAATTTTCTATGAACGCATGTA 57.236 29.630 0.00 0.00 35.94 2.29
572 573 8.668510 ATCTCTAATTTTCTATGAACGCATGT 57.331 30.769 0.00 0.00 35.94 3.21
605 606 5.767816 ATGCAGATACTCGTGTATGTACA 57.232 39.130 14.46 11.64 39.29 2.90
606 607 6.475727 ACAAATGCAGATACTCGTGTATGTAC 59.524 38.462 14.46 6.48 39.29 2.90
607 608 6.475402 CACAAATGCAGATACTCGTGTATGTA 59.525 38.462 14.46 3.54 39.29 2.29
608 609 5.291858 CACAAATGCAGATACTCGTGTATGT 59.708 40.000 14.46 8.08 39.29 2.29
610 611 5.973651 CACAAATGCAGATACTCGTGTAT 57.026 39.130 9.78 9.78 41.65 2.29
643 644 4.533222 CGTAGCAAAGTGTCCGAATTTTT 58.467 39.130 0.00 0.00 0.00 1.94
644 645 4.141855 CGTAGCAAAGTGTCCGAATTTT 57.858 40.909 0.00 0.00 0.00 1.82
645 646 3.806316 CGTAGCAAAGTGTCCGAATTT 57.194 42.857 0.00 0.00 0.00 1.82
696 697 0.408309 GGGGTAAGCAGGTCCCTTTT 59.592 55.000 0.00 0.00 40.88 2.27
726 727 8.508062 GTTTTGGGTGTATTTTTGAGTTTTTGT 58.492 29.630 0.00 0.00 0.00 2.83
727 728 8.726068 AGTTTTGGGTGTATTTTTGAGTTTTTG 58.274 29.630 0.00 0.00 0.00 2.44
728 729 8.856153 AGTTTTGGGTGTATTTTTGAGTTTTT 57.144 26.923 0.00 0.00 0.00 1.94
729 730 8.726068 CAAGTTTTGGGTGTATTTTTGAGTTTT 58.274 29.630 0.00 0.00 0.00 2.43
730 731 8.262715 CAAGTTTTGGGTGTATTTTTGAGTTT 57.737 30.769 0.00 0.00 0.00 2.66
731 732 7.841915 CAAGTTTTGGGTGTATTTTTGAGTT 57.158 32.000 0.00 0.00 0.00 3.01
782 783 0.179145 ATCGAACGTAAGGAGCACGG 60.179 55.000 0.00 0.00 43.59 4.94
792 823 1.233019 GGATCCCTCGATCGAACGTA 58.767 55.000 19.92 5.46 45.16 3.57
803 834 2.171237 TGACATGTCATGTGGATCCCTC 59.829 50.000 24.56 6.63 45.03 4.30
805 836 2.292267 GTGACATGTCATGTGGATCCC 58.708 52.381 30.10 11.26 45.03 3.85
806 837 1.935873 CGTGACATGTCATGTGGATCC 59.064 52.381 31.49 16.60 45.03 3.36
807 838 1.935873 CCGTGACATGTCATGTGGATC 59.064 52.381 34.78 19.61 45.03 3.36
808 839 2.013563 GCCGTGACATGTCATGTGGAT 61.014 52.381 34.78 0.00 45.03 3.41
809 840 0.673333 GCCGTGACATGTCATGTGGA 60.673 55.000 34.78 11.56 45.03 4.02
811 842 1.421093 CGCCGTGACATGTCATGTG 59.579 57.895 34.78 28.17 45.03 3.21
842 873 2.687370 CACAAGGTTTGCCCTAATTGC 58.313 47.619 0.00 0.00 45.47 3.56
851 882 0.538287 AGGAGGAGCACAAGGTTTGC 60.538 55.000 0.00 0.00 40.52 3.68
862 898 1.457455 CAGGAGGAGGAGGAGGAGC 60.457 68.421 0.00 0.00 0.00 4.70
863 899 1.232792 CCAGGAGGAGGAGGAGGAG 59.767 68.421 0.00 0.00 36.89 3.69
864 900 0.855855 TTCCAGGAGGAGGAGGAGGA 60.856 60.000 0.00 0.00 46.74 3.71
946 982 1.890876 TCATGGCAAGCGTGTTAAGT 58.109 45.000 0.59 0.00 0.00 2.24
948 984 3.717400 TTTTCATGGCAAGCGTGTTAA 57.283 38.095 0.59 0.00 0.00 2.01
949 985 3.932545 ATTTTCATGGCAAGCGTGTTA 57.067 38.095 0.59 0.00 0.00 2.41
950 986 2.818130 ATTTTCATGGCAAGCGTGTT 57.182 40.000 0.59 0.00 0.00 3.32
951 987 2.035704 TGAATTTTCATGGCAAGCGTGT 59.964 40.909 0.59 0.00 31.01 4.49
953 989 3.319755 CTTGAATTTTCATGGCAAGCGT 58.680 40.909 0.00 0.00 37.00 5.07
961 997 4.690122 GGATCTGGGCTTGAATTTTCATG 58.310 43.478 0.00 0.00 37.00 3.07
962 998 3.382546 CGGATCTGGGCTTGAATTTTCAT 59.617 43.478 0.00 0.00 37.00 2.57
992 1028 3.482232 ATCGGGTGCATGGCTAGCC 62.482 63.158 27.71 27.71 0.00 3.93
993 1029 1.963338 GATCGGGTGCATGGCTAGC 60.963 63.158 6.04 6.04 0.00 3.42
996 1032 4.552365 CCGATCGGGTGCATGGCT 62.552 66.667 26.95 0.00 0.00 4.75
1019 1077 2.025544 CTCGATCGAGCGTAAGAAGG 57.974 55.000 30.41 5.75 41.00 3.46
1039 1102 0.108615 ATGTTGGGTTCTCTCTCGCG 60.109 55.000 0.00 0.00 0.00 5.87
1043 1106 2.679059 CGATGCATGTTGGGTTCTCTCT 60.679 50.000 2.46 0.00 0.00 3.10
1046 1109 0.099436 GCGATGCATGTTGGGTTCTC 59.901 55.000 2.46 0.00 0.00 2.87
1047 1110 0.608856 TGCGATGCATGTTGGGTTCT 60.609 50.000 2.46 0.00 31.71 3.01
1048 1111 1.882311 TGCGATGCATGTTGGGTTC 59.118 52.632 2.46 0.00 31.71 3.62
1049 1112 4.093966 TGCGATGCATGTTGGGTT 57.906 50.000 2.46 0.00 31.71 4.11
1103 1166 1.939082 CGGGAGGAGGAGGAGGAGAA 61.939 65.000 0.00 0.00 0.00 2.87
2079 2151 1.863880 CGACGCGTCCTCGAAGAAG 60.864 63.158 31.84 11.88 39.71 2.85
2386 2458 2.446848 CCGGCTGGTCATCCTCCAT 61.447 63.158 2.29 0.00 34.26 3.41
2418 2490 1.069513 TCTTGGTTGTCGTCGTCCATT 59.930 47.619 0.00 0.00 0.00 3.16
2489 2561 5.973565 GCACTTATCATTTTGGTACATCTGC 59.026 40.000 0.00 0.00 39.30 4.26
2701 2781 2.374184 CCCGATGGCACCTCATTTTTA 58.626 47.619 0.00 0.00 0.00 1.52
2712 2795 1.379710 CATGTTTCCCCCGATGGCA 60.380 57.895 0.00 0.00 0.00 4.92
2716 2799 1.306296 CCACCATGTTTCCCCCGAT 59.694 57.895 0.00 0.00 0.00 4.18
2797 2885 0.802607 GACGTCTTCATGACCTCCGC 60.803 60.000 8.70 0.00 42.49 5.54
2809 2897 3.698289 TGACTTGGAGATAGGACGTCTT 58.302 45.455 16.46 10.98 0.00 3.01
2813 2901 5.290386 GGTTATTGACTTGGAGATAGGACG 58.710 45.833 0.00 0.00 0.00 4.79
2881 3019 1.294138 CCGCCCGGTAAAGACTTCA 59.706 57.895 0.00 0.00 0.00 3.02
2895 3033 1.694639 CGAAGGTCGATATAACCGCC 58.305 55.000 0.00 0.00 43.74 6.13
2974 3116 2.489329 CAAGTTGTTGCTATGTCTGGGG 59.511 50.000 0.00 0.00 0.00 4.96
3074 3216 2.254459 CGTGTAGTGAGCTAGCAACAG 58.746 52.381 18.83 0.41 0.00 3.16
3097 3239 6.187727 TCACTACTGGAATCTGGTTCTTTT 57.812 37.500 0.02 0.00 37.01 2.27
3192 3375 8.915036 GTTGTCTCCTATCTTATTCCTGAACTA 58.085 37.037 0.00 0.00 0.00 2.24
3194 3377 7.787028 AGTTGTCTCCTATCTTATTCCTGAAC 58.213 38.462 0.00 0.00 0.00 3.18
3195 3378 7.841729 AGAGTTGTCTCCTATCTTATTCCTGAA 59.158 37.037 0.00 0.00 41.26 3.02
3196 3379 7.286546 CAGAGTTGTCTCCTATCTTATTCCTGA 59.713 40.741 0.00 0.00 41.26 3.86
3197 3380 7.069331 ACAGAGTTGTCTCCTATCTTATTCCTG 59.931 40.741 0.00 0.00 41.26 3.86
3198 3381 7.069331 CACAGAGTTGTCTCCTATCTTATTCCT 59.931 40.741 0.00 0.00 41.26 3.36
3199 3382 7.147811 ACACAGAGTTGTCTCCTATCTTATTCC 60.148 40.741 0.00 0.00 41.26 3.01
3200 3383 7.777095 ACACAGAGTTGTCTCCTATCTTATTC 58.223 38.462 0.00 0.00 41.26 1.75
3201 3384 7.726033 ACACAGAGTTGTCTCCTATCTTATT 57.274 36.000 0.00 0.00 41.26 1.40
3202 3385 8.056400 ACTACACAGAGTTGTCTCCTATCTTAT 58.944 37.037 0.00 0.00 41.26 1.73
3203 3386 7.337184 CACTACACAGAGTTGTCTCCTATCTTA 59.663 40.741 0.00 0.00 41.26 2.10
3204 3387 6.151985 CACTACACAGAGTTGTCTCCTATCTT 59.848 42.308 0.00 0.00 41.26 2.40
3205 3388 5.650266 CACTACACAGAGTTGTCTCCTATCT 59.350 44.000 0.00 0.00 41.26 1.98
3206 3389 5.648526 TCACTACACAGAGTTGTCTCCTATC 59.351 44.000 0.00 0.00 41.26 2.08
3207 3390 5.571285 TCACTACACAGAGTTGTCTCCTAT 58.429 41.667 0.00 0.00 41.26 2.57
3208 3391 4.981812 TCACTACACAGAGTTGTCTCCTA 58.018 43.478 0.00 0.00 41.26 2.94
3209 3392 3.823873 CTCACTACACAGAGTTGTCTCCT 59.176 47.826 0.00 0.00 41.26 3.69
3210 3393 3.570550 ACTCACTACACAGAGTTGTCTCC 59.429 47.826 0.00 0.00 42.12 3.71
3211 3394 4.839668 ACTCACTACACAGAGTTGTCTC 57.160 45.455 0.00 0.00 42.12 3.36
3217 3400 4.076394 GGAGAGAACTCACTACACAGAGT 58.924 47.826 4.64 0.00 46.45 3.24
3218 3401 4.331968 AGGAGAGAACTCACTACACAGAG 58.668 47.826 4.64 0.00 44.22 3.35
3219 3402 4.374689 AGGAGAGAACTCACTACACAGA 57.625 45.455 4.64 0.00 44.22 3.41
3220 3403 6.119536 AGATAGGAGAGAACTCACTACACAG 58.880 44.000 4.64 0.00 44.22 3.66
3221 3404 6.068461 AGATAGGAGAGAACTCACTACACA 57.932 41.667 4.64 0.00 44.22 3.72
3222 3405 8.685838 ATAAGATAGGAGAGAACTCACTACAC 57.314 38.462 4.64 5.18 44.22 2.90
3223 3406 9.344772 GAATAAGATAGGAGAGAACTCACTACA 57.655 37.037 4.64 0.00 44.22 2.74
3235 3418 9.137459 CAAGTAGTTCAGGAATAAGATAGGAGA 57.863 37.037 0.00 0.00 0.00 3.71
3236 3419 9.137459 TCAAGTAGTTCAGGAATAAGATAGGAG 57.863 37.037 0.00 0.00 0.00 3.69
3237 3420 9.137459 CTCAAGTAGTTCAGGAATAAGATAGGA 57.863 37.037 0.00 0.00 0.00 2.94
3238 3421 9.137459 TCTCAAGTAGTTCAGGAATAAGATAGG 57.863 37.037 0.00 0.00 0.00 2.57
3241 3424 8.691797 GTCTCTCAAGTAGTTCAGGAATAAGAT 58.308 37.037 0.00 0.00 0.00 2.40
3242 3425 7.122948 GGTCTCTCAAGTAGTTCAGGAATAAGA 59.877 40.741 0.00 0.00 0.00 2.10
3243 3426 7.262048 GGTCTCTCAAGTAGTTCAGGAATAAG 58.738 42.308 0.00 0.00 0.00 1.73
3244 3427 6.154706 GGGTCTCTCAAGTAGTTCAGGAATAA 59.845 42.308 0.00 0.00 0.00 1.40
3245 3428 5.657302 GGGTCTCTCAAGTAGTTCAGGAATA 59.343 44.000 0.00 0.00 0.00 1.75
3246 3429 4.468153 GGGTCTCTCAAGTAGTTCAGGAAT 59.532 45.833 0.00 0.00 0.00 3.01
3247 3430 3.833070 GGGTCTCTCAAGTAGTTCAGGAA 59.167 47.826 0.00 0.00 0.00 3.36
3248 3431 3.432378 GGGTCTCTCAAGTAGTTCAGGA 58.568 50.000 0.00 0.00 0.00 3.86
3249 3432 2.164624 CGGGTCTCTCAAGTAGTTCAGG 59.835 54.545 0.00 0.00 0.00 3.86
3251 3434 1.544691 GCGGGTCTCTCAAGTAGTTCA 59.455 52.381 0.00 0.00 0.00 3.18
3252 3435 1.819903 AGCGGGTCTCTCAAGTAGTTC 59.180 52.381 0.00 0.00 0.00 3.01
3253 3436 1.926108 AGCGGGTCTCTCAAGTAGTT 58.074 50.000 0.00 0.00 0.00 2.24
3254 3437 1.546476 CAAGCGGGTCTCTCAAGTAGT 59.454 52.381 0.00 0.00 0.00 2.73
3258 3458 0.321122 AAGCAAGCGGGTCTCTCAAG 60.321 55.000 0.00 0.00 0.00 3.02
3305 3507 3.006967 ACTCTTGACAGGACGCATAAAGT 59.993 43.478 0.00 0.00 0.00 2.66
3306 3508 3.589988 ACTCTTGACAGGACGCATAAAG 58.410 45.455 0.00 0.00 0.00 1.85
3309 3511 3.377485 GTCTACTCTTGACAGGACGCATA 59.623 47.826 0.00 0.00 34.80 3.14
3315 3517 2.483106 CGAACGTCTACTCTTGACAGGA 59.517 50.000 0.00 0.00 34.37 3.86
3344 3546 3.066760 GTGTCCCAAAGAAAGTGGTGAAG 59.933 47.826 0.00 0.00 34.01 3.02
3374 3576 0.459585 CCACATACGTCGTTGAGGGG 60.460 60.000 1.78 0.27 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.