Multiple sequence alignment - TraesCS4D01G011000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G011000 chr4D 100.000 2968 0 0 1 2968 5322140 5319173 0.000000e+00 5481.0
1 TraesCS4D01G011000 chr4D 91.298 1471 95 6 307 1756 5275234 5276692 0.000000e+00 1977.0
2 TraesCS4D01G011000 chr4D 100.000 356 0 0 2613 2968 5236453 5236808 0.000000e+00 658.0
3 TraesCS4D01G011000 chr4D 96.328 354 6 4 2613 2959 5244864 5245217 2.570000e-160 575.0
4 TraesCS4D01G011000 chr4D 96.732 306 8 2 1 306 407186429 407186732 2.640000e-140 508.0
5 TraesCS4D01G011000 chr4A 88.273 1697 104 33 443 2083 598452231 598450574 0.000000e+00 1943.0
6 TraesCS4D01G011000 chr4A 89.347 1455 87 6 307 1742 598432316 598433721 0.000000e+00 1766.0
7 TraesCS4D01G011000 chr4A 89.810 579 39 7 2154 2730 598443415 598442855 0.000000e+00 725.0
8 TraesCS4D01G011000 chr4A 94.624 93 4 1 2792 2883 598442767 598442675 3.080000e-30 143.0
9 TraesCS4D01G011000 chr4A 91.111 45 4 0 2915 2959 598442679 598442635 8.880000e-06 62.1
10 TraesCS4D01G011000 chr4B 89.644 1207 77 10 561 1742 9390359 9389176 0.000000e+00 1493.0
11 TraesCS4D01G011000 chr4B 84.946 186 23 4 2543 2725 9357760 9357943 1.820000e-42 183.0
12 TraesCS4D01G011000 chr4B 87.755 147 8 1 441 577 9391176 9391030 2.370000e-36 163.0
13 TraesCS4D01G011000 chr4B 86.538 156 9 10 2808 2959 9358174 9358321 8.510000e-36 161.0
14 TraesCS4D01G011000 chr5A 81.254 1451 163 55 683 2050 569451746 569453170 0.000000e+00 1072.0
15 TraesCS4D01G011000 chr5A 81.303 936 101 30 832 1742 569463426 569464312 0.000000e+00 691.0
16 TraesCS4D01G011000 chr5A 98.750 80 1 0 2614 2693 569525419 569525340 3.080000e-30 143.0
17 TraesCS4D01G011000 chr5A 95.506 89 3 1 2605 2693 326659600 326659687 1.110000e-29 141.0
18 TraesCS4D01G011000 chr5A 98.750 80 0 1 2614 2693 329830149 329830071 1.110000e-29 141.0
19 TraesCS4D01G011000 chr5A 93.617 47 3 0 1751 1797 569464340 569464386 1.480000e-08 71.3
20 TraesCS4D01G011000 chr5D 86.555 833 92 6 905 1733 450149010 450149826 0.000000e+00 900.0
21 TraesCS4D01G011000 chr5D 79.695 1246 160 51 832 2046 450158838 450160021 0.000000e+00 813.0
22 TraesCS4D01G011000 chr5D 82.473 930 128 20 832 1736 450163969 450164888 0.000000e+00 782.0
23 TraesCS4D01G011000 chr5D 78.344 314 39 21 2384 2693 450201765 450201477 3.040000e-40 176.0
24 TraesCS4D01G011000 chr5B 80.354 1242 132 55 849 2041 550161663 550162841 0.000000e+00 839.0
25 TraesCS4D01G011000 chr5B 83.986 868 103 18 878 1736 550156009 550156849 0.000000e+00 800.0
26 TraesCS4D01G011000 chr5B 94.681 94 4 1 2600 2693 550214595 550214503 8.570000e-31 145.0
27 TraesCS4D01G011000 chr3D 97.403 308 8 0 1 308 609465510 609465817 2.620000e-145 525.0
28 TraesCS4D01G011000 chr3D 86.290 124 8 4 318 440 467478229 467478344 3.110000e-25 126.0
29 TraesCS4D01G011000 chr1D 97.403 308 8 0 1 308 299687734 299688041 2.620000e-145 525.0
30 TraesCS4D01G011000 chr1D 97.403 308 7 1 1 308 259767541 259767847 9.430000e-145 523.0
31 TraesCS4D01G011000 chr7D 97.386 306 7 1 1 306 26653768 26654072 1.220000e-143 520.0
32 TraesCS4D01G011000 chr7D 97.360 303 8 0 1 303 108595987 108596289 1.580000e-142 516.0
33 TraesCS4D01G011000 chr7D 96.429 308 10 1 1 308 69792040 69792346 9.490000e-140 507.0
34 TraesCS4D01G011000 chr6D 95.912 318 13 0 1 318 43962727 43962410 1.580000e-142 516.0
35 TraesCS4D01G011000 chr2D 96.753 308 9 1 1 308 579005024 579004718 2.040000e-141 512.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G011000 chr4D 5319173 5322140 2967 True 5481.000000 5481 100.000000 1 2968 1 chr4D.!!$R1 2967
1 TraesCS4D01G011000 chr4D 5275234 5276692 1458 False 1977.000000 1977 91.298000 307 1756 1 chr4D.!!$F3 1449
2 TraesCS4D01G011000 chr4A 598450574 598452231 1657 True 1943.000000 1943 88.273000 443 2083 1 chr4A.!!$R1 1640
3 TraesCS4D01G011000 chr4A 598432316 598433721 1405 False 1766.000000 1766 89.347000 307 1742 1 chr4A.!!$F1 1435
4 TraesCS4D01G011000 chr4A 598442635 598443415 780 True 310.033333 725 91.848333 2154 2959 3 chr4A.!!$R2 805
5 TraesCS4D01G011000 chr4B 9389176 9391176 2000 True 828.000000 1493 88.699500 441 1742 2 chr4B.!!$R1 1301
6 TraesCS4D01G011000 chr5A 569451746 569453170 1424 False 1072.000000 1072 81.254000 683 2050 1 chr5A.!!$F2 1367
7 TraesCS4D01G011000 chr5A 569463426 569464386 960 False 381.150000 691 87.460000 832 1797 2 chr5A.!!$F3 965
8 TraesCS4D01G011000 chr5D 450149010 450149826 816 False 900.000000 900 86.555000 905 1733 1 chr5D.!!$F1 828
9 TraesCS4D01G011000 chr5D 450158838 450164888 6050 False 797.500000 813 81.084000 832 2046 2 chr5D.!!$F2 1214
10 TraesCS4D01G011000 chr5B 550161663 550162841 1178 False 839.000000 839 80.354000 849 2041 1 chr5B.!!$F2 1192
11 TraesCS4D01G011000 chr5B 550156009 550156849 840 False 800.000000 800 83.986000 878 1736 1 chr5B.!!$F1 858

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
55 56 0.033894 AGGAGGAGAGAGGACGAACC 60.034 60.0 0.00 0.0 39.35 3.62 F
1478 2296 0.107165 GCCGGAGTCCAAGCCTAAAT 60.107 55.0 5.05 0.0 0.00 1.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1801 2692 0.106708 GACAGAGATTGCGCCCCATA 59.893 55.0 4.18 0.0 0.0 2.74 R
2497 4227 0.252284 AGTCCATCTCTCCCCGTTGT 60.252 55.0 0.00 0.0 0.0 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 3.162154 GAGGGGGCCCGAGGTTAG 61.162 72.222 17.79 0.00 41.95 2.34
28 29 4.817909 AGGGGGCCCGAGGTTAGG 62.818 72.222 17.79 0.00 41.95 2.69
34 35 2.441532 CCCGAGGTTAGGGCTCGA 60.442 66.667 0.00 0.00 42.77 4.04
35 36 2.491022 CCCGAGGTTAGGGCTCGAG 61.491 68.421 8.45 8.45 42.77 4.04
36 37 1.453379 CCGAGGTTAGGGCTCGAGA 60.453 63.158 18.75 0.00 42.46 4.04
37 38 1.448922 CCGAGGTTAGGGCTCGAGAG 61.449 65.000 18.75 0.00 42.46 3.20
38 39 1.448922 CGAGGTTAGGGCTCGAGAGG 61.449 65.000 18.75 0.00 42.46 3.69
39 40 0.106619 GAGGTTAGGGCTCGAGAGGA 60.107 60.000 18.75 0.00 0.00 3.71
40 41 0.106419 AGGTTAGGGCTCGAGAGGAG 60.106 60.000 18.75 0.00 46.06 3.69
41 42 1.110518 GGTTAGGGCTCGAGAGGAGG 61.111 65.000 18.75 0.00 43.36 4.30
42 43 0.106619 GTTAGGGCTCGAGAGGAGGA 60.107 60.000 18.75 0.00 43.36 3.71
43 44 0.183971 TTAGGGCTCGAGAGGAGGAG 59.816 60.000 18.75 0.00 43.36 3.69
44 45 0.694783 TAGGGCTCGAGAGGAGGAGA 60.695 60.000 18.75 0.00 43.36 3.71
45 46 1.528309 GGGCTCGAGAGGAGGAGAG 60.528 68.421 18.75 0.00 43.36 3.20
46 47 1.529796 GGCTCGAGAGGAGGAGAGA 59.470 63.158 18.75 0.00 43.36 3.10
47 48 0.535102 GGCTCGAGAGGAGGAGAGAG 60.535 65.000 18.75 0.00 43.36 3.20
48 49 0.535102 GCTCGAGAGGAGGAGAGAGG 60.535 65.000 18.75 0.00 43.36 3.69
49 50 1.128200 CTCGAGAGGAGGAGAGAGGA 58.872 60.000 6.58 0.00 39.22 3.71
50 51 0.834612 TCGAGAGGAGGAGAGAGGAC 59.165 60.000 0.00 0.00 0.00 3.85
51 52 0.531974 CGAGAGGAGGAGAGAGGACG 60.532 65.000 0.00 0.00 0.00 4.79
52 53 0.834612 GAGAGGAGGAGAGAGGACGA 59.165 60.000 0.00 0.00 0.00 4.20
53 54 1.210967 GAGAGGAGGAGAGAGGACGAA 59.789 57.143 0.00 0.00 0.00 3.85
54 55 1.064979 AGAGGAGGAGAGAGGACGAAC 60.065 57.143 0.00 0.00 0.00 3.95
55 56 0.033894 AGGAGGAGAGAGGACGAACC 60.034 60.000 0.00 0.00 39.35 3.62
56 57 1.378124 GGAGGAGAGAGGACGAACCG 61.378 65.000 0.00 0.00 44.74 4.44
57 58 1.995646 GAGGAGAGAGGACGAACCGC 61.996 65.000 0.00 0.00 44.74 5.68
68 69 3.941035 GAACCGCTCGAACCGAAA 58.059 55.556 6.70 0.00 34.74 3.46
69 70 2.452767 GAACCGCTCGAACCGAAAT 58.547 52.632 6.70 0.00 34.74 2.17
70 71 0.794473 GAACCGCTCGAACCGAAATT 59.206 50.000 6.70 0.00 34.74 1.82
71 72 0.794473 AACCGCTCGAACCGAAATTC 59.206 50.000 6.70 0.00 34.74 2.17
72 73 0.320073 ACCGCTCGAACCGAAATTCA 60.320 50.000 6.70 0.00 34.74 2.57
73 74 0.793861 CCGCTCGAACCGAAATTCAA 59.206 50.000 6.70 0.00 34.74 2.69
74 75 1.195900 CCGCTCGAACCGAAATTCAAA 59.804 47.619 6.70 0.00 34.74 2.69
75 76 2.350007 CCGCTCGAACCGAAATTCAAAA 60.350 45.455 6.70 0.00 34.74 2.44
76 77 2.902484 CGCTCGAACCGAAATTCAAAAG 59.098 45.455 0.00 0.00 34.74 2.27
77 78 3.363575 CGCTCGAACCGAAATTCAAAAGA 60.364 43.478 0.00 0.00 34.74 2.52
78 79 4.151798 GCTCGAACCGAAATTCAAAAGAG 58.848 43.478 0.00 0.00 34.74 2.85
79 80 4.319549 GCTCGAACCGAAATTCAAAAGAGT 60.320 41.667 0.00 0.00 34.74 3.24
80 81 5.107220 GCTCGAACCGAAATTCAAAAGAGTA 60.107 40.000 0.00 0.00 34.74 2.59
81 82 6.219302 TCGAACCGAAATTCAAAAGAGTAC 57.781 37.500 0.00 0.00 31.06 2.73
82 83 5.070862 CGAACCGAAATTCAAAAGAGTACG 58.929 41.667 0.00 0.00 0.00 3.67
83 84 4.400036 ACCGAAATTCAAAAGAGTACGC 57.600 40.909 0.00 0.00 0.00 4.42
84 85 3.810941 ACCGAAATTCAAAAGAGTACGCA 59.189 39.130 0.00 0.00 0.00 5.24
85 86 4.148891 CCGAAATTCAAAAGAGTACGCAC 58.851 43.478 0.00 0.00 0.00 5.34
86 87 3.833061 CGAAATTCAAAAGAGTACGCACG 59.167 43.478 0.00 0.00 0.00 5.34
87 88 4.375606 CGAAATTCAAAAGAGTACGCACGA 60.376 41.667 0.00 0.00 0.00 4.35
88 89 5.607119 AAATTCAAAAGAGTACGCACGAT 57.393 34.783 0.00 0.00 0.00 3.73
89 90 4.584029 ATTCAAAAGAGTACGCACGATG 57.416 40.909 0.00 0.00 0.00 3.84
90 91 3.291809 TCAAAAGAGTACGCACGATGA 57.708 42.857 0.00 0.00 0.00 2.92
91 92 3.845178 TCAAAAGAGTACGCACGATGAT 58.155 40.909 0.00 0.00 0.00 2.45
92 93 4.242475 TCAAAAGAGTACGCACGATGATT 58.758 39.130 0.00 0.00 0.00 2.57
93 94 4.091365 TCAAAAGAGTACGCACGATGATTG 59.909 41.667 0.00 0.00 0.00 2.67
94 95 2.209838 AGAGTACGCACGATGATTGG 57.790 50.000 0.00 0.00 0.00 3.16
95 96 1.749063 AGAGTACGCACGATGATTGGA 59.251 47.619 0.00 0.00 0.00 3.53
96 97 1.852895 GAGTACGCACGATGATTGGAC 59.147 52.381 0.00 0.00 0.00 4.02
97 98 0.928229 GTACGCACGATGATTGGACC 59.072 55.000 0.00 0.00 0.00 4.46
98 99 0.821517 TACGCACGATGATTGGACCT 59.178 50.000 0.00 0.00 0.00 3.85
99 100 0.460284 ACGCACGATGATTGGACCTC 60.460 55.000 0.00 0.00 0.00 3.85
100 101 0.179100 CGCACGATGATTGGACCTCT 60.179 55.000 0.00 0.00 0.00 3.69
101 102 1.067060 CGCACGATGATTGGACCTCTA 59.933 52.381 0.00 0.00 0.00 2.43
102 103 2.288457 CGCACGATGATTGGACCTCTAT 60.288 50.000 0.00 0.00 0.00 1.98
103 104 3.057526 CGCACGATGATTGGACCTCTATA 60.058 47.826 0.00 0.00 0.00 1.31
104 105 4.558697 CGCACGATGATTGGACCTCTATAA 60.559 45.833 0.00 0.00 0.00 0.98
105 106 5.482908 GCACGATGATTGGACCTCTATAAT 58.517 41.667 0.00 0.00 0.00 1.28
106 107 5.349817 GCACGATGATTGGACCTCTATAATG 59.650 44.000 0.00 0.00 0.00 1.90
107 108 6.691508 CACGATGATTGGACCTCTATAATGA 58.308 40.000 0.00 0.00 0.00 2.57
108 109 7.154656 CACGATGATTGGACCTCTATAATGAA 58.845 38.462 0.00 0.00 0.00 2.57
109 110 7.330454 CACGATGATTGGACCTCTATAATGAAG 59.670 40.741 0.00 0.00 0.00 3.02
110 111 7.015682 ACGATGATTGGACCTCTATAATGAAGT 59.984 37.037 0.00 0.00 0.00 3.01
111 112 7.330454 CGATGATTGGACCTCTATAATGAAGTG 59.670 40.741 0.00 0.00 0.00 3.16
112 113 6.291377 TGATTGGACCTCTATAATGAAGTGC 58.709 40.000 0.00 0.00 0.00 4.40
113 114 5.957771 TTGGACCTCTATAATGAAGTGCT 57.042 39.130 0.00 0.00 0.00 4.40
114 115 5.957771 TGGACCTCTATAATGAAGTGCTT 57.042 39.130 0.00 0.00 0.00 3.91
115 116 6.313519 TGGACCTCTATAATGAAGTGCTTT 57.686 37.500 0.00 0.00 0.00 3.51
116 117 7.432148 TGGACCTCTATAATGAAGTGCTTTA 57.568 36.000 0.00 0.00 0.00 1.85
117 118 8.034313 TGGACCTCTATAATGAAGTGCTTTAT 57.966 34.615 0.00 0.00 33.12 1.40
118 119 8.494433 TGGACCTCTATAATGAAGTGCTTTATT 58.506 33.333 7.05 7.05 34.00 1.40
119 120 9.998106 GGACCTCTATAATGAAGTGCTTTATTA 57.002 33.333 10.26 10.26 36.11 0.98
160 161 8.897872 TTGAAAAATATAGGACGAGAATACCC 57.102 34.615 0.00 0.00 0.00 3.69
161 162 7.447594 TGAAAAATATAGGACGAGAATACCCC 58.552 38.462 0.00 0.00 0.00 4.95
162 163 7.291651 TGAAAAATATAGGACGAGAATACCCCT 59.708 37.037 0.00 0.00 0.00 4.79
163 164 6.607004 AAATATAGGACGAGAATACCCCTG 57.393 41.667 0.00 0.00 0.00 4.45
164 165 2.376695 TAGGACGAGAATACCCCTGG 57.623 55.000 0.00 0.00 0.00 4.45
165 166 0.635009 AGGACGAGAATACCCCTGGA 59.365 55.000 0.00 0.00 0.00 3.86
166 167 0.751452 GGACGAGAATACCCCTGGAC 59.249 60.000 0.00 0.00 0.00 4.02
167 168 0.751452 GACGAGAATACCCCTGGACC 59.249 60.000 0.00 0.00 0.00 4.46
168 169 0.338814 ACGAGAATACCCCTGGACCT 59.661 55.000 0.00 0.00 0.00 3.85
169 170 1.572415 ACGAGAATACCCCTGGACCTA 59.428 52.381 0.00 0.00 0.00 3.08
170 171 2.023695 ACGAGAATACCCCTGGACCTAA 60.024 50.000 0.00 0.00 0.00 2.69
171 172 3.240302 CGAGAATACCCCTGGACCTAAT 58.760 50.000 0.00 0.00 0.00 1.73
172 173 3.646637 CGAGAATACCCCTGGACCTAATT 59.353 47.826 0.00 0.00 0.00 1.40
173 174 4.503296 CGAGAATACCCCTGGACCTAATTG 60.503 50.000 0.00 0.00 0.00 2.32
174 175 3.722101 AGAATACCCCTGGACCTAATTGG 59.278 47.826 0.00 0.00 42.93 3.16
175 176 1.901648 TACCCCTGGACCTAATTGGG 58.098 55.000 6.25 6.25 41.11 4.12
176 177 1.230212 CCCCTGGACCTAATTGGGC 59.770 63.158 7.93 0.00 45.48 5.36
185 186 4.830826 GACCTAATTGGGCCGATTAAAG 57.169 45.455 23.36 19.58 38.13 1.85
186 187 4.204799 GACCTAATTGGGCCGATTAAAGT 58.795 43.478 23.36 22.03 38.13 2.66
187 188 4.606210 ACCTAATTGGGCCGATTAAAGTT 58.394 39.130 23.36 4.37 41.11 2.66
188 189 4.401202 ACCTAATTGGGCCGATTAAAGTTG 59.599 41.667 23.36 13.23 41.11 3.16
189 190 4.642885 CCTAATTGGGCCGATTAAAGTTGA 59.357 41.667 23.36 5.38 0.00 3.18
190 191 5.126384 CCTAATTGGGCCGATTAAAGTTGAA 59.874 40.000 23.36 4.71 0.00 2.69
191 192 5.476091 AATTGGGCCGATTAAAGTTGAAA 57.524 34.783 17.67 0.00 0.00 2.69
192 193 4.939052 TTGGGCCGATTAAAGTTGAAAA 57.061 36.364 0.00 0.00 0.00 2.29
193 194 4.939052 TGGGCCGATTAAAGTTGAAAAA 57.061 36.364 0.00 0.00 0.00 1.94
194 195 4.623002 TGGGCCGATTAAAGTTGAAAAAC 58.377 39.130 0.00 0.00 0.00 2.43
195 196 4.099573 TGGGCCGATTAAAGTTGAAAAACA 59.900 37.500 0.00 0.00 0.00 2.83
196 197 5.051153 GGGCCGATTAAAGTTGAAAAACAA 58.949 37.500 0.00 0.00 36.02 2.83
197 198 5.699001 GGGCCGATTAAAGTTGAAAAACAAT 59.301 36.000 0.00 0.00 40.76 2.71
198 199 6.203915 GGGCCGATTAAAGTTGAAAAACAATT 59.796 34.615 0.00 0.00 40.76 2.32
199 200 7.385478 GGGCCGATTAAAGTTGAAAAACAATTA 59.615 33.333 0.00 0.00 40.76 1.40
200 201 8.432359 GGCCGATTAAAGTTGAAAAACAATTAG 58.568 33.333 0.00 0.00 40.76 1.73
201 202 8.432359 GCCGATTAAAGTTGAAAAACAATTAGG 58.568 33.333 0.00 0.00 40.76 2.69
202 203 9.471084 CCGATTAAAGTTGAAAAACAATTAGGT 57.529 29.630 0.00 0.00 40.76 3.08
207 208 8.989653 AAAGTTGAAAAACAATTAGGTCGAAA 57.010 26.923 0.00 0.00 40.76 3.46
208 209 8.989653 AAGTTGAAAAACAATTAGGTCGAAAA 57.010 26.923 0.00 0.00 40.76 2.29
209 210 9.594478 AAGTTGAAAAACAATTAGGTCGAAAAT 57.406 25.926 0.00 0.00 40.76 1.82
212 213 9.465985 TTGAAAAACAATTAGGTCGAAAATACC 57.534 29.630 0.00 0.00 33.82 2.73
213 214 8.083462 TGAAAAACAATTAGGTCGAAAATACCC 58.917 33.333 0.00 0.00 37.77 3.69
214 215 7.770366 AAAACAATTAGGTCGAAAATACCCT 57.230 32.000 0.00 0.00 37.77 4.34
215 216 7.770366 AAACAATTAGGTCGAAAATACCCTT 57.230 32.000 0.00 0.00 37.77 3.95
216 217 6.753107 ACAATTAGGTCGAAAATACCCTTG 57.247 37.500 0.00 0.00 37.77 3.61
217 218 5.650703 ACAATTAGGTCGAAAATACCCTTGG 59.349 40.000 0.00 0.00 37.77 3.61
218 219 2.801077 AGGTCGAAAATACCCTTGGG 57.199 50.000 3.77 3.77 37.77 4.12
219 220 1.100510 GGTCGAAAATACCCTTGGGC 58.899 55.000 5.46 0.00 0.00 5.36
220 221 1.340697 GGTCGAAAATACCCTTGGGCT 60.341 52.381 5.46 0.00 0.00 5.19
221 222 2.014857 GTCGAAAATACCCTTGGGCTC 58.985 52.381 5.46 0.00 0.00 4.70
222 223 1.631388 TCGAAAATACCCTTGGGCTCA 59.369 47.619 5.46 0.00 0.00 4.26
223 224 2.040545 TCGAAAATACCCTTGGGCTCAA 59.959 45.455 5.46 0.00 0.00 3.02
224 225 2.823154 CGAAAATACCCTTGGGCTCAAA 59.177 45.455 0.00 0.00 31.77 2.69
225 226 3.257127 CGAAAATACCCTTGGGCTCAAAA 59.743 43.478 0.00 0.00 31.77 2.44
226 227 4.262249 CGAAAATACCCTTGGGCTCAAAAA 60.262 41.667 0.00 0.00 31.77 1.94
227 228 4.890158 AAATACCCTTGGGCTCAAAAAG 57.110 40.909 0.00 0.00 31.77 2.27
228 229 2.302587 TACCCTTGGGCTCAAAAAGG 57.697 50.000 0.00 4.20 40.21 3.11
234 235 4.198087 GGCTCAAAAAGGCCCAGT 57.802 55.556 0.00 0.00 44.69 4.00
235 236 2.440946 GGCTCAAAAAGGCCCAGTT 58.559 52.632 0.00 0.00 44.69 3.16
236 237 1.627864 GGCTCAAAAAGGCCCAGTTA 58.372 50.000 0.00 0.00 44.69 2.24
237 238 2.179427 GGCTCAAAAAGGCCCAGTTAT 58.821 47.619 0.00 0.00 44.69 1.89
238 239 2.567169 GGCTCAAAAAGGCCCAGTTATT 59.433 45.455 0.00 0.00 44.69 1.40
239 240 3.368427 GGCTCAAAAAGGCCCAGTTATTC 60.368 47.826 0.00 0.00 44.69 1.75
240 241 3.511540 GCTCAAAAAGGCCCAGTTATTCT 59.488 43.478 0.00 0.00 0.00 2.40
241 242 4.380973 GCTCAAAAAGGCCCAGTTATTCTC 60.381 45.833 0.00 0.00 0.00 2.87
242 243 4.735369 TCAAAAAGGCCCAGTTATTCTCA 58.265 39.130 0.00 0.00 0.00 3.27
243 244 5.332743 TCAAAAAGGCCCAGTTATTCTCAT 58.667 37.500 0.00 0.00 0.00 2.90
244 245 5.418840 TCAAAAAGGCCCAGTTATTCTCATC 59.581 40.000 0.00 0.00 0.00 2.92
245 246 4.870021 AAAGGCCCAGTTATTCTCATCT 57.130 40.909 0.00 0.00 0.00 2.90
246 247 3.853355 AGGCCCAGTTATTCTCATCTG 57.147 47.619 0.00 0.00 0.00 2.90
247 248 3.118531 AGGCCCAGTTATTCTCATCTGT 58.881 45.455 0.00 0.00 0.00 3.41
248 249 3.525199 AGGCCCAGTTATTCTCATCTGTT 59.475 43.478 0.00 0.00 0.00 3.16
249 250 4.721776 AGGCCCAGTTATTCTCATCTGTTA 59.278 41.667 0.00 0.00 0.00 2.41
250 251 5.059833 GGCCCAGTTATTCTCATCTGTTAG 58.940 45.833 0.00 0.00 0.00 2.34
251 252 5.163301 GGCCCAGTTATTCTCATCTGTTAGA 60.163 44.000 0.00 0.00 0.00 2.10
252 253 6.465035 GGCCCAGTTATTCTCATCTGTTAGAT 60.465 42.308 0.00 0.00 34.74 1.98
253 254 6.648725 GCCCAGTTATTCTCATCTGTTAGATC 59.351 42.308 0.00 0.00 31.32 2.75
254 255 6.865726 CCCAGTTATTCTCATCTGTTAGATCG 59.134 42.308 0.00 0.00 31.32 3.69
255 256 6.364706 CCAGTTATTCTCATCTGTTAGATCGC 59.635 42.308 0.00 0.00 31.32 4.58
256 257 6.364706 CAGTTATTCTCATCTGTTAGATCGCC 59.635 42.308 0.00 0.00 31.32 5.54
257 258 3.735237 TTCTCATCTGTTAGATCGCCC 57.265 47.619 0.00 0.00 31.32 6.13
258 259 2.666317 TCTCATCTGTTAGATCGCCCA 58.334 47.619 0.00 0.00 31.32 5.36
259 260 3.234353 TCTCATCTGTTAGATCGCCCAT 58.766 45.455 0.00 0.00 31.32 4.00
260 261 4.407365 TCTCATCTGTTAGATCGCCCATA 58.593 43.478 0.00 0.00 31.32 2.74
261 262 5.019470 TCTCATCTGTTAGATCGCCCATAT 58.981 41.667 0.00 0.00 31.32 1.78
262 263 6.187682 TCTCATCTGTTAGATCGCCCATATA 58.812 40.000 0.00 0.00 31.32 0.86
263 264 6.663523 TCTCATCTGTTAGATCGCCCATATAA 59.336 38.462 0.00 0.00 31.32 0.98
264 265 7.343057 TCTCATCTGTTAGATCGCCCATATAAT 59.657 37.037 0.00 0.00 31.32 1.28
265 266 8.533569 TCATCTGTTAGATCGCCCATATAATA 57.466 34.615 0.00 0.00 31.32 0.98
266 267 8.414003 TCATCTGTTAGATCGCCCATATAATAC 58.586 37.037 0.00 0.00 31.32 1.89
267 268 7.712204 TCTGTTAGATCGCCCATATAATACA 57.288 36.000 0.00 0.00 0.00 2.29
268 269 8.306313 TCTGTTAGATCGCCCATATAATACAT 57.694 34.615 0.00 0.00 0.00 2.29
269 270 8.197439 TCTGTTAGATCGCCCATATAATACATG 58.803 37.037 0.00 0.00 0.00 3.21
270 271 7.847096 TGTTAGATCGCCCATATAATACATGT 58.153 34.615 2.69 2.69 0.00 3.21
271 272 7.763985 TGTTAGATCGCCCATATAATACATGTG 59.236 37.037 9.11 0.00 0.00 3.21
272 273 5.118990 AGATCGCCCATATAATACATGTGC 58.881 41.667 9.11 0.00 0.00 4.57
273 274 4.551702 TCGCCCATATAATACATGTGCT 57.448 40.909 9.11 0.00 0.00 4.40
274 275 4.503910 TCGCCCATATAATACATGTGCTC 58.496 43.478 9.11 0.00 0.00 4.26
275 276 4.222810 TCGCCCATATAATACATGTGCTCT 59.777 41.667 9.11 0.00 0.00 4.09
276 277 4.330894 CGCCCATATAATACATGTGCTCTG 59.669 45.833 9.11 0.00 0.00 3.35
277 278 4.637534 GCCCATATAATACATGTGCTCTGG 59.362 45.833 9.11 7.69 0.00 3.86
278 279 5.804446 GCCCATATAATACATGTGCTCTGGT 60.804 44.000 9.11 0.00 0.00 4.00
279 280 5.645067 CCCATATAATACATGTGCTCTGGTG 59.355 44.000 9.11 0.00 0.00 4.17
280 281 6.233434 CCATATAATACATGTGCTCTGGTGT 58.767 40.000 9.11 0.00 0.00 4.16
281 282 7.386059 CCATATAATACATGTGCTCTGGTGTA 58.614 38.462 9.11 0.00 0.00 2.90
282 283 8.043113 CCATATAATACATGTGCTCTGGTGTAT 58.957 37.037 9.11 0.00 38.91 2.29
283 284 9.440773 CATATAATACATGTGCTCTGGTGTATT 57.559 33.333 9.11 18.92 44.99 1.89
289 290 7.734924 ACATGTGCTCTGGTGTATTATAATG 57.265 36.000 8.28 0.00 0.00 1.90
290 291 6.205464 ACATGTGCTCTGGTGTATTATAATGC 59.795 38.462 8.28 7.40 0.00 3.56
291 292 5.679601 TGTGCTCTGGTGTATTATAATGCA 58.320 37.500 11.69 11.69 0.00 3.96
292 293 5.527214 TGTGCTCTGGTGTATTATAATGCAC 59.473 40.000 28.58 28.58 46.88 4.57
304 305 9.953697 TGTATTATAATGCACCGTAAAATTTCC 57.046 29.630 11.69 0.00 0.00 3.13
305 306 9.401873 GTATTATAATGCACCGTAAAATTTCCC 57.598 33.333 8.28 0.00 0.00 3.97
316 317 6.943718 ACCGTAAAATTTCCCTTACAGAATGA 59.056 34.615 0.00 0.00 39.69 2.57
398 399 4.826274 TCAGGAGGGTGAAGATTAGTTG 57.174 45.455 0.00 0.00 0.00 3.16
399 400 3.055094 TCAGGAGGGTGAAGATTAGTTGC 60.055 47.826 0.00 0.00 0.00 4.17
603 1302 6.705302 TGCAATCAAAATAGTAAATGGCCAA 58.295 32.000 10.96 0.00 0.00 4.52
977 1765 2.016318 TGTTAATTGATGCAGCCTCCG 58.984 47.619 0.00 0.00 0.00 4.63
1057 1848 2.681894 AACACACACGCGCACACAA 61.682 52.632 5.73 0.00 0.00 3.33
1102 1893 1.000060 GGCTGCAATCACAAGAAGCAA 60.000 47.619 0.50 0.00 38.06 3.91
1178 1969 0.954452 CTCCACTTTCCACCAAGCAC 59.046 55.000 0.00 0.00 0.00 4.40
1223 2014 2.213499 CCGTCAAGAAGTTTGCAGAGT 58.787 47.619 0.00 0.00 0.00 3.24
1225 2016 2.097202 CGTCAAGAAGTTTGCAGAGTCG 60.097 50.000 0.00 0.00 0.00 4.18
1261 2052 1.213537 CAAACCAGAGCCAATGCCG 59.786 57.895 0.00 0.00 38.69 5.69
1362 2180 2.607442 GCCCAAACCCAAGCCCAT 60.607 61.111 0.00 0.00 0.00 4.00
1381 2199 1.287503 GCCGATGCCAAAACCGAAA 59.712 52.632 0.00 0.00 0.00 3.46
1466 2284 2.032071 CCGAACCAAAGCCGGAGT 59.968 61.111 5.05 0.00 45.58 3.85
1478 2296 0.107165 GCCGGAGTCCAAGCCTAAAT 60.107 55.000 5.05 0.00 0.00 1.40
1490 2308 4.399303 CCAAGCCTAAATCTGAACCGAAAT 59.601 41.667 0.00 0.00 0.00 2.17
1515 2333 1.961277 CGCCTCCGAAGTGCAAACT 60.961 57.895 0.00 0.00 36.29 2.66
1523 2341 2.066262 CGAAGTGCAAACTACCGACAT 58.934 47.619 0.00 0.00 0.00 3.06
1598 2437 1.740025 GAGCCACACTGTGCTATTTCC 59.260 52.381 7.90 0.00 31.34 3.13
1746 2614 4.483311 AGTCGACTCGTTCTTTTGTATCC 58.517 43.478 13.58 0.00 0.00 2.59
1792 2683 4.074970 CCAGTGGACTGCAGTCTATTTTT 58.925 43.478 38.17 20.67 44.20 1.94
1812 2703 0.251386 TTTTGACCTATGGGGCGCAA 60.251 50.000 10.83 0.00 45.75 4.85
1879 2808 4.450419 GGAGAAAGATGGATGATGCTAACG 59.550 45.833 0.00 0.00 0.00 3.18
1900 2829 3.556004 CGAAAAGGAAGAGAAGCACTCCT 60.556 47.826 7.20 0.00 45.96 3.69
1925 2861 9.520204 CTTATTCCCTAAATAGCAACACAAATG 57.480 33.333 0.00 0.00 31.52 2.32
1926 2862 7.716799 ATTCCCTAAATAGCAACACAAATGA 57.283 32.000 0.00 0.00 0.00 2.57
1944 2884 0.921347 GAAGTATAGTGTGCGCGTGG 59.079 55.000 8.43 0.00 0.00 4.94
2015 2958 3.870633 GGTCTTGTTCTCTACCGACAT 57.129 47.619 0.00 0.00 31.48 3.06
2016 2959 4.978083 GGTCTTGTTCTCTACCGACATA 57.022 45.455 0.00 0.00 31.48 2.29
2084 3256 6.575162 TCTTGCAGACCCTTAATTTCTTTC 57.425 37.500 0.00 0.00 0.00 2.62
2086 3258 5.705609 TGCAGACCCTTAATTTCTTTCAC 57.294 39.130 0.00 0.00 0.00 3.18
2087 3259 4.522789 TGCAGACCCTTAATTTCTTTCACC 59.477 41.667 0.00 0.00 0.00 4.02
2092 3264 6.782494 AGACCCTTAATTTCTTTCACCATGTT 59.218 34.615 0.00 0.00 0.00 2.71
2094 3266 6.165577 CCCTTAATTTCTTTCACCATGTTGG 58.834 40.000 0.00 0.00 45.02 3.77
2095 3267 5.639082 CCTTAATTTCTTTCACCATGTTGGC 59.361 40.000 0.00 0.00 42.67 4.52
2096 3268 4.686191 AATTTCTTTCACCATGTTGGCA 57.314 36.364 0.00 0.00 42.67 4.92
2097 3269 3.451141 TTTCTTTCACCATGTTGGCAC 57.549 42.857 0.00 0.00 42.67 5.01
2098 3270 2.363306 TCTTTCACCATGTTGGCACT 57.637 45.000 0.00 0.00 42.67 4.40
2099 3271 2.229792 TCTTTCACCATGTTGGCACTC 58.770 47.619 0.00 0.00 42.67 3.51
2100 3272 1.270550 CTTTCACCATGTTGGCACTCC 59.729 52.381 0.00 0.00 42.67 3.85
2101 3273 0.539438 TTCACCATGTTGGCACTCCC 60.539 55.000 0.00 0.00 42.67 4.30
2103 3275 2.162906 ACCATGTTGGCACTCCCCT 61.163 57.895 0.00 0.00 42.67 4.79
2104 3276 1.679977 CCATGTTGGCACTCCCCTG 60.680 63.158 0.00 0.00 0.00 4.45
2105 3277 1.679977 CATGTTGGCACTCCCCTGG 60.680 63.158 0.00 0.00 0.00 4.45
2106 3278 1.852157 ATGTTGGCACTCCCCTGGA 60.852 57.895 0.00 0.00 0.00 3.86
2107 3279 2.034221 GTTGGCACTCCCCTGGAC 59.966 66.667 0.00 0.00 0.00 4.02
2112 3284 1.078143 GCACTCCCCTGGACATGAC 60.078 63.158 0.00 0.00 0.00 3.06
2113 3285 1.604378 CACTCCCCTGGACATGACC 59.396 63.158 7.32 7.32 0.00 4.02
2115 3287 0.253347 ACTCCCCTGGACATGACCAT 60.253 55.000 17.33 0.00 39.34 3.55
2116 3288 0.182061 CTCCCCTGGACATGACCATG 59.818 60.000 17.33 14.13 44.15 3.66
2128 3664 0.984230 TGACCATGTTCCTCCTGGAC 59.016 55.000 0.00 0.00 43.06 4.02
2130 3666 0.987294 ACCATGTTCCTCCTGGACTG 59.013 55.000 0.00 0.00 43.06 3.51
2132 3668 0.393537 CATGTTCCTCCTGGACTGGC 60.394 60.000 0.00 0.00 43.06 4.85
2138 3674 0.690411 CCTCCTGGACTGGCTCATCT 60.690 60.000 0.00 0.00 34.57 2.90
2140 3676 0.907486 TCCTGGACTGGCTCATCTTG 59.093 55.000 0.00 0.00 0.00 3.02
2142 3678 1.134461 CCTGGACTGGCTCATCTTGAG 60.134 57.143 0.08 0.08 46.90 3.02
2200 3791 7.011202 CAGAGTGCGTTGTCTAGTTAGATAGTA 59.989 40.741 0.00 0.00 34.39 1.82
2246 3837 6.421405 TCGATTCAATATTTTGATGCAGTCG 58.579 36.000 0.00 5.88 41.38 4.18
2266 3857 6.908820 CAGTCGAGTGCGTTATAACTTATACA 59.091 38.462 13.56 1.89 38.98 2.29
2267 3858 7.430211 CAGTCGAGTGCGTTATAACTTATACAA 59.570 37.037 13.56 0.00 38.98 2.41
2268 3859 7.430502 AGTCGAGTGCGTTATAACTTATACAAC 59.569 37.037 13.56 5.08 38.98 3.32
2282 3873 3.830744 ATACAACTAGGTAATGCGCCA 57.169 42.857 4.18 0.00 0.00 5.69
2284 3875 1.278127 ACAACTAGGTAATGCGCCACT 59.722 47.619 4.18 0.00 0.00 4.00
2285 3876 1.933853 CAACTAGGTAATGCGCCACTC 59.066 52.381 4.18 0.00 0.00 3.51
2304 3895 5.890334 CACTCGTTATTGTGGGCATTTAAT 58.110 37.500 0.00 0.00 0.00 1.40
2306 3897 7.476667 CACTCGTTATTGTGGGCATTTAATAA 58.523 34.615 0.00 0.00 0.00 1.40
2307 3898 8.134895 CACTCGTTATTGTGGGCATTTAATAAT 58.865 33.333 0.00 0.00 30.47 1.28
2308 3899 8.134895 ACTCGTTATTGTGGGCATTTAATAATG 58.865 33.333 0.00 0.00 43.28 1.90
2309 3900 8.226819 TCGTTATTGTGGGCATTTAATAATGA 57.773 30.769 0.00 0.00 43.12 2.57
2310 3901 8.687242 TCGTTATTGTGGGCATTTAATAATGAA 58.313 29.630 0.00 0.00 43.12 2.57
2311 3902 9.307121 CGTTATTGTGGGCATTTAATAATGAAA 57.693 29.630 2.25 0.00 43.12 2.69
2315 3906 9.902684 ATTGTGGGCATTTAATAATGAAATGAA 57.097 25.926 12.03 0.14 43.85 2.57
2316 3907 8.715191 TGTGGGCATTTAATAATGAAATGAAC 57.285 30.769 12.03 7.80 43.85 3.18
2435 4165 2.802719 GGCATGTCCCTTTTACTTGGA 58.197 47.619 0.00 0.00 0.00 3.53
2443 4173 6.081356 TGTCCCTTTTACTTGGATTTCCATT 58.919 36.000 0.00 0.00 46.97 3.16
2469 4199 2.403252 ACAACAAGCGCCTAATAGCT 57.597 45.000 2.29 0.00 46.97 3.32
2470 4200 3.536956 ACAACAAGCGCCTAATAGCTA 57.463 42.857 2.29 0.00 43.78 3.32
2471 4201 3.458189 ACAACAAGCGCCTAATAGCTAG 58.542 45.455 2.29 0.00 43.78 3.42
2472 4202 3.118738 ACAACAAGCGCCTAATAGCTAGT 60.119 43.478 2.29 0.00 43.78 2.57
2482 4212 6.693545 GCGCCTAATAGCTAGTATTCACTATG 59.306 42.308 0.65 0.00 36.66 2.23
2539 4667 8.245701 ACTTCTCGCAAAAACAATAAACAAAA 57.754 26.923 0.00 0.00 0.00 2.44
2540 4668 8.379902 ACTTCTCGCAAAAACAATAAACAAAAG 58.620 29.630 0.00 0.00 0.00 2.27
2558 4688 1.038130 AGAACGGGGAGAGATGGACG 61.038 60.000 0.00 0.00 0.00 4.79
2587 4717 4.406972 TGTGCCTGAAGCTGATTAGTAGAT 59.593 41.667 0.00 0.00 44.23 1.98
2591 4721 5.238214 GCCTGAAGCTGATTAGTAGATTTGG 59.762 44.000 0.00 0.00 38.99 3.28
2594 4724 6.115446 TGAAGCTGATTAGTAGATTTGGTGG 58.885 40.000 0.00 0.00 0.00 4.61
2685 4815 0.613853 TCGATTCTCGGAACACCCCT 60.614 55.000 0.00 0.00 40.88 4.79
2686 4816 1.108776 CGATTCTCGGAACACCCCTA 58.891 55.000 0.00 0.00 36.00 3.53
2703 4833 4.763279 ACCCCTAATTTTTAGACGGTGTTG 59.237 41.667 0.00 0.00 0.00 3.33
2721 4851 4.090588 TTGGCGATCGGACCCCAC 62.091 66.667 18.30 0.00 0.00 4.61
2730 4860 3.338250 GGACCCCACCATCTGCCA 61.338 66.667 0.00 0.00 0.00 4.92
2731 4861 2.044946 GACCCCACCATCTGCCAC 60.045 66.667 0.00 0.00 0.00 5.01
2732 4862 2.532715 ACCCCACCATCTGCCACT 60.533 61.111 0.00 0.00 0.00 4.00
2737 4867 2.174639 CCCCACCATCTGCCACTATTTA 59.825 50.000 0.00 0.00 0.00 1.40
2738 4868 3.480470 CCCACCATCTGCCACTATTTAG 58.520 50.000 0.00 0.00 0.00 1.85
2740 4870 4.130118 CCACCATCTGCCACTATTTAGAC 58.870 47.826 0.00 0.00 0.00 2.59
2742 4872 3.181465 ACCATCTGCCACTATTTAGACGG 60.181 47.826 0.00 0.00 0.00 4.79
2744 4874 3.520290 TCTGCCACTATTTAGACGGTG 57.480 47.619 0.00 0.00 0.00 4.94
2748 4878 5.128171 TCTGCCACTATTTAGACGGTGTTAT 59.872 40.000 0.00 0.00 0.00 1.89
2750 4880 5.583061 TGCCACTATTTAGACGGTGTTATTG 59.417 40.000 0.00 0.00 0.00 1.90
2751 4881 5.007332 GCCACTATTTAGACGGTGTTATTGG 59.993 44.000 0.00 0.00 0.00 3.16
2752 4882 5.007332 CCACTATTTAGACGGTGTTATTGGC 59.993 44.000 0.00 0.00 0.00 4.52
2753 4883 4.807304 ACTATTTAGACGGTGTTATTGGCG 59.193 41.667 0.00 0.00 0.00 5.69
2754 4884 3.316071 TTTAGACGGTGTTATTGGCGA 57.684 42.857 0.00 0.00 0.00 5.54
2755 4885 3.530265 TTAGACGGTGTTATTGGCGAT 57.470 42.857 0.00 0.00 0.00 4.58
2756 4886 1.935933 AGACGGTGTTATTGGCGATC 58.064 50.000 0.00 0.00 0.00 3.69
2759 4889 0.528901 CGGTGTTATTGGCGATCGGA 60.529 55.000 18.30 0.00 0.00 4.55
2760 4890 0.935196 GGTGTTATTGGCGATCGGAC 59.065 55.000 18.30 0.00 0.00 4.79
2761 4891 0.935196 GTGTTATTGGCGATCGGACC 59.065 55.000 18.30 11.07 0.00 4.46
2762 4892 0.179067 TGTTATTGGCGATCGGACCC 60.179 55.000 18.30 10.30 0.00 4.46
2763 4893 0.883370 GTTATTGGCGATCGGACCCC 60.883 60.000 18.30 9.91 0.00 4.95
2764 4894 1.052124 TTATTGGCGATCGGACCCCT 61.052 55.000 18.30 3.18 0.00 4.79
2765 4895 1.052124 TATTGGCGATCGGACCCCTT 61.052 55.000 18.30 4.32 0.00 3.95
2789 5034 6.625873 TTTTTCTCTCTCCTTTTCTTCTGC 57.374 37.500 0.00 0.00 0.00 4.26
2871 6646 7.177392 CCTCAAAACAATCTAACAGAGGGAATT 59.823 37.037 0.00 0.00 38.15 2.17
2874 6649 9.793252 CAAAACAATCTAACAGAGGGAATTATG 57.207 33.333 0.00 0.00 0.00 1.90
2891 6666 9.981114 GGGAATTATGTAATTACAATCAAAGGG 57.019 33.333 21.57 0.00 38.07 3.95
2899 6674 9.308000 TGTAATTACAATCAAAGGGAAATCAGT 57.692 29.630 15.92 0.00 32.40 3.41
2903 6678 5.388654 ACAATCAAAGGGAAATCAGTCACT 58.611 37.500 0.00 0.00 30.40 3.41
2904 6679 6.542821 ACAATCAAAGGGAAATCAGTCACTA 58.457 36.000 0.00 0.00 28.55 2.74
2905 6680 6.431234 ACAATCAAAGGGAAATCAGTCACTAC 59.569 38.462 0.00 0.00 28.55 2.73
2906 6681 5.825593 TCAAAGGGAAATCAGTCACTACT 57.174 39.130 0.00 0.00 35.91 2.57
2907 6682 6.928348 TCAAAGGGAAATCAGTCACTACTA 57.072 37.500 0.00 0.00 33.48 1.82
2910 6685 6.875972 AAGGGAAATCAGTCACTACTACAT 57.124 37.500 0.00 0.00 33.48 2.29
2911 6686 6.227298 AGGGAAATCAGTCACTACTACATG 57.773 41.667 0.00 0.00 33.48 3.21
2912 6687 4.811557 GGGAAATCAGTCACTACTACATGC 59.188 45.833 0.00 0.00 33.48 4.06
2915 6690 6.595716 GGAAATCAGTCACTACTACATGCTTT 59.404 38.462 0.00 0.00 33.48 3.51
2916 6691 7.201565 GGAAATCAGTCACTACTACATGCTTTC 60.202 40.741 0.00 0.00 33.48 2.62
2917 6692 5.073311 TCAGTCACTACTACATGCTTTCC 57.927 43.478 0.00 0.00 33.48 3.13
2918 6693 3.859961 CAGTCACTACTACATGCTTTCCG 59.140 47.826 0.00 0.00 33.48 4.30
2949 6724 1.331756 CAGCATGCAATAACGGAGGTC 59.668 52.381 21.98 0.00 0.00 3.85
2952 6727 2.477863 GCATGCAATAACGGAGGTCAAC 60.478 50.000 14.21 0.00 0.00 3.18
2955 6730 3.417101 TGCAATAACGGAGGTCAACAAT 58.583 40.909 0.00 0.00 0.00 2.71
2960 6735 1.794222 CGGAGGTCAACAATTCCGC 59.206 57.895 0.00 0.00 44.99 5.54
2961 6736 0.953471 CGGAGGTCAACAATTCCGCA 60.953 55.000 0.00 0.00 44.99 5.69
2962 6737 1.463674 GGAGGTCAACAATTCCGCAT 58.536 50.000 0.00 0.00 0.00 4.73
2963 6738 1.133025 GGAGGTCAACAATTCCGCATG 59.867 52.381 0.00 0.00 0.00 4.06
2964 6739 1.812571 GAGGTCAACAATTCCGCATGT 59.187 47.619 0.00 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 3.162154 CTAACCTCGGGCCCCCTC 61.162 72.222 18.66 0.00 0.00 4.30
11 12 4.817909 CCTAACCTCGGGCCCCCT 62.818 72.222 18.66 0.00 0.00 4.79
20 21 0.106619 TCCTCTCGAGCCCTAACCTC 60.107 60.000 7.81 0.00 0.00 3.85
21 22 0.106419 CTCCTCTCGAGCCCTAACCT 60.106 60.000 7.81 0.00 0.00 3.50
22 23 1.110518 CCTCCTCTCGAGCCCTAACC 61.111 65.000 7.81 0.00 37.27 2.85
23 24 0.106619 TCCTCCTCTCGAGCCCTAAC 60.107 60.000 7.81 0.00 37.27 2.34
24 25 0.183971 CTCCTCCTCTCGAGCCCTAA 59.816 60.000 7.81 0.00 37.27 2.69
25 26 0.694783 TCTCCTCCTCTCGAGCCCTA 60.695 60.000 7.81 0.00 37.27 3.53
26 27 1.994885 CTCTCCTCCTCTCGAGCCCT 61.995 65.000 7.81 0.00 37.27 5.19
27 28 1.528309 CTCTCCTCCTCTCGAGCCC 60.528 68.421 7.81 0.00 37.27 5.19
28 29 0.535102 CTCTCTCCTCCTCTCGAGCC 60.535 65.000 7.81 0.00 37.27 4.70
29 30 0.535102 CCTCTCTCCTCCTCTCGAGC 60.535 65.000 7.81 0.00 37.27 5.03
30 31 1.128200 TCCTCTCTCCTCCTCTCGAG 58.872 60.000 5.93 5.93 38.46 4.04
31 32 0.834612 GTCCTCTCTCCTCCTCTCGA 59.165 60.000 0.00 0.00 0.00 4.04
32 33 0.531974 CGTCCTCTCTCCTCCTCTCG 60.532 65.000 0.00 0.00 0.00 4.04
33 34 0.834612 TCGTCCTCTCTCCTCCTCTC 59.165 60.000 0.00 0.00 0.00 3.20
34 35 1.064979 GTTCGTCCTCTCTCCTCCTCT 60.065 57.143 0.00 0.00 0.00 3.69
35 36 1.385528 GTTCGTCCTCTCTCCTCCTC 58.614 60.000 0.00 0.00 0.00 3.71
36 37 0.033894 GGTTCGTCCTCTCTCCTCCT 60.034 60.000 0.00 0.00 0.00 3.69
37 38 1.378124 CGGTTCGTCCTCTCTCCTCC 61.378 65.000 0.00 0.00 0.00 4.30
38 39 1.995646 GCGGTTCGTCCTCTCTCCTC 61.996 65.000 0.00 0.00 0.00 3.71
39 40 2.047443 GCGGTTCGTCCTCTCTCCT 61.047 63.158 0.00 0.00 0.00 3.69
40 41 1.995646 GAGCGGTTCGTCCTCTCTCC 61.996 65.000 10.44 0.00 42.82 3.71
41 42 1.430228 GAGCGGTTCGTCCTCTCTC 59.570 63.158 10.44 5.43 42.82 3.20
42 43 2.400158 CGAGCGGTTCGTCCTCTCT 61.400 63.158 6.06 3.21 43.65 3.10
43 44 2.100603 CGAGCGGTTCGTCCTCTC 59.899 66.667 6.06 8.52 44.27 3.20
51 52 0.794473 AATTTCGGTTCGAGCGGTTC 59.206 50.000 6.71 0.00 39.89 3.62
52 53 0.794473 GAATTTCGGTTCGAGCGGTT 59.206 50.000 6.71 0.00 39.89 4.44
53 54 0.320073 TGAATTTCGGTTCGAGCGGT 60.320 50.000 6.71 0.00 39.89 5.68
54 55 0.793861 TTGAATTTCGGTTCGAGCGG 59.206 50.000 0.16 0.16 39.89 5.52
55 56 2.587612 TTTGAATTTCGGTTCGAGCG 57.412 45.000 0.00 0.00 40.97 5.03
56 57 4.141855 TCTTTTGAATTTCGGTTCGAGC 57.858 40.909 0.00 0.00 37.14 5.03
57 58 5.344207 ACTCTTTTGAATTTCGGTTCGAG 57.656 39.130 0.00 0.00 37.14 4.04
58 59 5.107760 CGTACTCTTTTGAATTTCGGTTCGA 60.108 40.000 0.00 0.00 0.00 3.71
59 60 5.070862 CGTACTCTTTTGAATTTCGGTTCG 58.929 41.667 0.00 0.00 0.00 3.95
60 61 4.844522 GCGTACTCTTTTGAATTTCGGTTC 59.155 41.667 0.00 0.00 0.00 3.62
61 62 4.273969 TGCGTACTCTTTTGAATTTCGGTT 59.726 37.500 0.00 0.00 0.00 4.44
62 63 3.810941 TGCGTACTCTTTTGAATTTCGGT 59.189 39.130 0.00 0.00 0.00 4.69
63 64 4.148891 GTGCGTACTCTTTTGAATTTCGG 58.851 43.478 0.00 0.00 0.00 4.30
64 65 3.833061 CGTGCGTACTCTTTTGAATTTCG 59.167 43.478 1.24 0.00 0.00 3.46
65 66 5.013861 TCGTGCGTACTCTTTTGAATTTC 57.986 39.130 1.24 0.00 0.00 2.17
66 67 5.178623 TCATCGTGCGTACTCTTTTGAATTT 59.821 36.000 1.24 0.00 0.00 1.82
67 68 4.688879 TCATCGTGCGTACTCTTTTGAATT 59.311 37.500 1.24 0.00 0.00 2.17
68 69 4.242475 TCATCGTGCGTACTCTTTTGAAT 58.758 39.130 1.24 0.00 0.00 2.57
69 70 3.644823 TCATCGTGCGTACTCTTTTGAA 58.355 40.909 1.24 0.00 0.00 2.69
70 71 3.291809 TCATCGTGCGTACTCTTTTGA 57.708 42.857 1.24 0.00 0.00 2.69
71 72 4.326205 CAATCATCGTGCGTACTCTTTTG 58.674 43.478 1.24 0.00 0.00 2.44
72 73 3.370978 CCAATCATCGTGCGTACTCTTTT 59.629 43.478 1.24 0.00 0.00 2.27
73 74 2.930040 CCAATCATCGTGCGTACTCTTT 59.070 45.455 1.24 0.00 0.00 2.52
74 75 2.165641 TCCAATCATCGTGCGTACTCTT 59.834 45.455 1.24 0.00 0.00 2.85
75 76 1.749063 TCCAATCATCGTGCGTACTCT 59.251 47.619 1.24 0.00 0.00 3.24
76 77 1.852895 GTCCAATCATCGTGCGTACTC 59.147 52.381 1.24 0.00 0.00 2.59
77 78 1.470979 GGTCCAATCATCGTGCGTACT 60.471 52.381 1.24 0.00 0.00 2.73
78 79 0.928229 GGTCCAATCATCGTGCGTAC 59.072 55.000 0.00 0.00 0.00 3.67
79 80 0.821517 AGGTCCAATCATCGTGCGTA 59.178 50.000 0.00 0.00 0.00 4.42
80 81 0.460284 GAGGTCCAATCATCGTGCGT 60.460 55.000 0.00 0.00 0.00 5.24
81 82 0.179100 AGAGGTCCAATCATCGTGCG 60.179 55.000 0.00 0.00 0.00 5.34
82 83 2.890808 TAGAGGTCCAATCATCGTGC 57.109 50.000 0.00 0.00 0.00 5.34
83 84 6.691508 TCATTATAGAGGTCCAATCATCGTG 58.308 40.000 0.00 0.00 0.00 4.35
84 85 6.918067 TCATTATAGAGGTCCAATCATCGT 57.082 37.500 0.00 0.00 0.00 3.73
85 86 7.330454 CACTTCATTATAGAGGTCCAATCATCG 59.670 40.741 0.00 0.00 0.00 3.84
86 87 7.118971 GCACTTCATTATAGAGGTCCAATCATC 59.881 40.741 0.00 0.00 0.00 2.92
87 88 6.939163 GCACTTCATTATAGAGGTCCAATCAT 59.061 38.462 0.00 0.00 0.00 2.45
88 89 6.100279 AGCACTTCATTATAGAGGTCCAATCA 59.900 38.462 0.00 0.00 0.00 2.57
89 90 6.529220 AGCACTTCATTATAGAGGTCCAATC 58.471 40.000 0.00 0.00 0.00 2.67
90 91 6.506538 AGCACTTCATTATAGAGGTCCAAT 57.493 37.500 0.00 0.00 0.00 3.16
91 92 5.957771 AGCACTTCATTATAGAGGTCCAA 57.042 39.130 0.00 0.00 0.00 3.53
92 93 5.957771 AAGCACTTCATTATAGAGGTCCA 57.042 39.130 0.00 0.00 0.00 4.02
93 94 8.910351 AATAAAGCACTTCATTATAGAGGTCC 57.090 34.615 0.00 0.00 0.00 4.46
134 135 9.503399 GGGTATTCTCGTCCTATATTTTTCAAT 57.497 33.333 0.00 0.00 0.00 2.57
135 136 7.935210 GGGGTATTCTCGTCCTATATTTTTCAA 59.065 37.037 0.00 0.00 0.00 2.69
136 137 7.291651 AGGGGTATTCTCGTCCTATATTTTTCA 59.708 37.037 0.00 0.00 0.00 2.69
137 138 7.603024 CAGGGGTATTCTCGTCCTATATTTTTC 59.397 40.741 0.00 0.00 0.00 2.29
138 139 7.450903 CAGGGGTATTCTCGTCCTATATTTTT 58.549 38.462 0.00 0.00 0.00 1.94
139 140 6.013639 CCAGGGGTATTCTCGTCCTATATTTT 60.014 42.308 0.00 0.00 0.00 1.82
140 141 5.484290 CCAGGGGTATTCTCGTCCTATATTT 59.516 44.000 0.00 0.00 0.00 1.40
141 142 5.024118 CCAGGGGTATTCTCGTCCTATATT 58.976 45.833 0.00 0.00 0.00 1.28
142 143 4.294168 TCCAGGGGTATTCTCGTCCTATAT 59.706 45.833 0.00 0.00 0.00 0.86
143 144 3.659195 TCCAGGGGTATTCTCGTCCTATA 59.341 47.826 0.00 0.00 0.00 1.31
144 145 2.449730 TCCAGGGGTATTCTCGTCCTAT 59.550 50.000 0.00 0.00 0.00 2.57
145 146 1.854939 TCCAGGGGTATTCTCGTCCTA 59.145 52.381 0.00 0.00 0.00 2.94
146 147 0.635009 TCCAGGGGTATTCTCGTCCT 59.365 55.000 0.00 0.00 0.00 3.85
147 148 0.751452 GTCCAGGGGTATTCTCGTCC 59.249 60.000 0.00 0.00 0.00 4.79
148 149 0.751452 GGTCCAGGGGTATTCTCGTC 59.249 60.000 0.00 0.00 0.00 4.20
149 150 0.338814 AGGTCCAGGGGTATTCTCGT 59.661 55.000 0.00 0.00 0.00 4.18
150 151 2.376695 TAGGTCCAGGGGTATTCTCG 57.623 55.000 0.00 0.00 0.00 4.04
151 152 4.202472 CCAATTAGGTCCAGGGGTATTCTC 60.202 50.000 0.00 0.00 0.00 2.87
152 153 3.722101 CCAATTAGGTCCAGGGGTATTCT 59.278 47.826 0.00 0.00 0.00 2.40
153 154 3.181433 CCCAATTAGGTCCAGGGGTATTC 60.181 52.174 0.00 0.00 35.83 1.75
154 155 2.789399 CCCAATTAGGTCCAGGGGTATT 59.211 50.000 0.00 0.00 35.83 1.89
155 156 2.428901 CCCAATTAGGTCCAGGGGTAT 58.571 52.381 0.00 0.00 35.83 2.73
156 157 1.901648 CCCAATTAGGTCCAGGGGTA 58.098 55.000 0.00 0.00 35.83 3.69
157 158 1.580994 GCCCAATTAGGTCCAGGGGT 61.581 60.000 0.00 0.00 39.96 4.95
158 159 1.230212 GCCCAATTAGGTCCAGGGG 59.770 63.158 0.00 0.00 39.96 4.79
159 160 1.230212 GGCCCAATTAGGTCCAGGG 59.770 63.158 0.00 0.00 42.55 4.45
160 161 1.152963 CGGCCCAATTAGGTCCAGG 60.153 63.158 0.00 0.00 34.66 4.45
161 162 0.474184 ATCGGCCCAATTAGGTCCAG 59.526 55.000 0.00 0.00 34.66 3.86
162 163 0.923358 AATCGGCCCAATTAGGTCCA 59.077 50.000 0.00 0.00 34.66 4.02
163 164 2.943036 TAATCGGCCCAATTAGGTCC 57.057 50.000 0.00 0.00 34.66 4.46
164 165 4.204799 ACTTTAATCGGCCCAATTAGGTC 58.795 43.478 0.00 0.00 34.66 3.85
165 166 4.245251 ACTTTAATCGGCCCAATTAGGT 57.755 40.909 0.00 2.87 34.66 3.08
166 167 4.642885 TCAACTTTAATCGGCCCAATTAGG 59.357 41.667 0.00 2.29 37.03 2.69
167 168 5.828299 TCAACTTTAATCGGCCCAATTAG 57.172 39.130 0.00 0.00 0.00 1.73
168 169 6.591750 TTTCAACTTTAATCGGCCCAATTA 57.408 33.333 0.00 0.00 0.00 1.40
169 170 5.476091 TTTCAACTTTAATCGGCCCAATT 57.524 34.783 0.00 0.00 0.00 2.32
170 171 5.476091 TTTTCAACTTTAATCGGCCCAAT 57.524 34.783 0.00 0.00 0.00 3.16
171 172 4.939052 TTTTCAACTTTAATCGGCCCAA 57.061 36.364 0.00 0.00 0.00 4.12
172 173 4.099573 TGTTTTTCAACTTTAATCGGCCCA 59.900 37.500 0.00 0.00 33.58 5.36
173 174 4.623002 TGTTTTTCAACTTTAATCGGCCC 58.377 39.130 0.00 0.00 33.58 5.80
174 175 6.779115 ATTGTTTTTCAACTTTAATCGGCC 57.221 33.333 0.00 0.00 38.97 6.13
175 176 8.432359 CCTAATTGTTTTTCAACTTTAATCGGC 58.568 33.333 0.00 0.00 38.97 5.54
176 177 9.471084 ACCTAATTGTTTTTCAACTTTAATCGG 57.529 29.630 0.00 0.00 38.97 4.18
182 183 8.989653 TTTCGACCTAATTGTTTTTCAACTTT 57.010 26.923 0.00 0.00 38.97 2.66
183 184 8.989653 TTTTCGACCTAATTGTTTTTCAACTT 57.010 26.923 0.00 0.00 38.97 2.66
186 187 9.465985 GGTATTTTCGACCTAATTGTTTTTCAA 57.534 29.630 0.00 0.00 35.89 2.69
187 188 8.083462 GGGTATTTTCGACCTAATTGTTTTTCA 58.917 33.333 0.00 0.00 37.13 2.69
188 189 8.301720 AGGGTATTTTCGACCTAATTGTTTTTC 58.698 33.333 0.00 0.00 37.13 2.29
189 190 8.185506 AGGGTATTTTCGACCTAATTGTTTTT 57.814 30.769 0.00 0.00 37.13 1.94
190 191 7.770366 AGGGTATTTTCGACCTAATTGTTTT 57.230 32.000 0.00 0.00 37.13 2.43
191 192 7.309560 CCAAGGGTATTTTCGACCTAATTGTTT 60.310 37.037 0.00 0.00 37.13 2.83
192 193 6.152154 CCAAGGGTATTTTCGACCTAATTGTT 59.848 38.462 0.00 0.00 37.13 2.83
193 194 5.650703 CCAAGGGTATTTTCGACCTAATTGT 59.349 40.000 0.00 0.00 37.13 2.71
194 195 5.067283 CCCAAGGGTATTTTCGACCTAATTG 59.933 44.000 0.00 0.00 37.13 2.32
195 196 5.198207 CCCAAGGGTATTTTCGACCTAATT 58.802 41.667 0.00 0.00 37.13 1.40
196 197 4.788679 CCCAAGGGTATTTTCGACCTAAT 58.211 43.478 0.00 0.00 37.13 1.73
197 198 3.622953 GCCCAAGGGTATTTTCGACCTAA 60.623 47.826 7.05 0.00 37.13 2.69
198 199 2.092807 GCCCAAGGGTATTTTCGACCTA 60.093 50.000 7.05 0.00 37.13 3.08
199 200 1.340697 GCCCAAGGGTATTTTCGACCT 60.341 52.381 7.05 0.00 37.13 3.85
200 201 1.100510 GCCCAAGGGTATTTTCGACC 58.899 55.000 7.05 0.00 37.65 4.79
201 202 2.014857 GAGCCCAAGGGTATTTTCGAC 58.985 52.381 7.05 0.00 37.65 4.20
202 203 1.631388 TGAGCCCAAGGGTATTTTCGA 59.369 47.619 7.05 0.00 37.65 3.71
203 204 2.122783 TGAGCCCAAGGGTATTTTCG 57.877 50.000 7.05 0.00 37.65 3.46
204 205 4.882842 TTTTGAGCCCAAGGGTATTTTC 57.117 40.909 7.05 0.00 37.65 2.29
205 206 4.041567 CCTTTTTGAGCCCAAGGGTATTTT 59.958 41.667 7.05 0.00 34.47 1.82
206 207 3.582647 CCTTTTTGAGCCCAAGGGTATTT 59.417 43.478 7.05 0.00 34.47 1.40
207 208 3.173151 CCTTTTTGAGCCCAAGGGTATT 58.827 45.455 7.05 0.00 34.47 1.89
208 209 2.820178 CCTTTTTGAGCCCAAGGGTAT 58.180 47.619 7.05 0.00 34.47 2.73
209 210 1.825641 GCCTTTTTGAGCCCAAGGGTA 60.826 52.381 7.05 0.00 38.04 3.69
210 211 1.121407 GCCTTTTTGAGCCCAAGGGT 61.121 55.000 7.05 0.00 38.04 4.34
211 212 1.673477 GCCTTTTTGAGCCCAAGGG 59.327 57.895 0.00 0.00 38.04 3.95
212 213 1.673477 GGCCTTTTTGAGCCCAAGG 59.327 57.895 0.00 0.00 43.76 3.61
218 219 3.511540 AGAATAACTGGGCCTTTTTGAGC 59.488 43.478 4.53 0.00 0.00 4.26
219 220 4.766891 TGAGAATAACTGGGCCTTTTTGAG 59.233 41.667 4.53 0.00 0.00 3.02
220 221 4.735369 TGAGAATAACTGGGCCTTTTTGA 58.265 39.130 4.53 0.00 0.00 2.69
221 222 5.420104 AGATGAGAATAACTGGGCCTTTTTG 59.580 40.000 4.53 0.00 0.00 2.44
222 223 5.420104 CAGATGAGAATAACTGGGCCTTTTT 59.580 40.000 4.53 0.00 0.00 1.94
223 224 4.952335 CAGATGAGAATAACTGGGCCTTTT 59.048 41.667 4.53 0.00 0.00 2.27
224 225 4.018050 ACAGATGAGAATAACTGGGCCTTT 60.018 41.667 4.53 0.00 35.08 3.11
225 226 3.525199 ACAGATGAGAATAACTGGGCCTT 59.475 43.478 4.53 0.00 35.08 4.35
226 227 3.118531 ACAGATGAGAATAACTGGGCCT 58.881 45.455 4.53 0.00 35.08 5.19
227 228 3.567478 ACAGATGAGAATAACTGGGCC 57.433 47.619 0.00 0.00 35.08 5.80
228 229 5.918608 TCTAACAGATGAGAATAACTGGGC 58.081 41.667 0.00 0.00 35.08 5.36
229 230 6.865726 CGATCTAACAGATGAGAATAACTGGG 59.134 42.308 0.00 0.00 34.53 4.45
230 231 6.364706 GCGATCTAACAGATGAGAATAACTGG 59.635 42.308 0.00 0.00 34.53 4.00
231 232 6.364706 GGCGATCTAACAGATGAGAATAACTG 59.635 42.308 0.00 0.00 34.53 3.16
232 233 6.451393 GGCGATCTAACAGATGAGAATAACT 58.549 40.000 0.00 0.00 34.53 2.24
233 234 5.635700 GGGCGATCTAACAGATGAGAATAAC 59.364 44.000 0.00 0.00 34.53 1.89
234 235 5.304357 TGGGCGATCTAACAGATGAGAATAA 59.696 40.000 0.00 0.00 34.53 1.40
235 236 4.832823 TGGGCGATCTAACAGATGAGAATA 59.167 41.667 0.00 0.00 34.53 1.75
236 237 3.643320 TGGGCGATCTAACAGATGAGAAT 59.357 43.478 0.00 0.00 34.53 2.40
237 238 3.031013 TGGGCGATCTAACAGATGAGAA 58.969 45.455 0.00 0.00 34.53 2.87
238 239 2.666317 TGGGCGATCTAACAGATGAGA 58.334 47.619 0.00 0.00 34.53 3.27
239 240 3.674528 ATGGGCGATCTAACAGATGAG 57.325 47.619 0.00 0.00 34.53 2.90
240 241 6.850752 TTATATGGGCGATCTAACAGATGA 57.149 37.500 0.00 0.00 34.53 2.92
241 242 8.197439 TGTATTATATGGGCGATCTAACAGATG 58.803 37.037 0.00 0.00 34.53 2.90
242 243 8.306313 TGTATTATATGGGCGATCTAACAGAT 57.694 34.615 0.00 0.00 37.73 2.90
243 244 7.712204 TGTATTATATGGGCGATCTAACAGA 57.288 36.000 0.00 0.00 0.00 3.41
244 245 7.981789 ACATGTATTATATGGGCGATCTAACAG 59.018 37.037 0.00 0.00 0.00 3.16
245 246 7.763985 CACATGTATTATATGGGCGATCTAACA 59.236 37.037 0.00 0.00 0.00 2.41
246 247 7.254455 GCACATGTATTATATGGGCGATCTAAC 60.254 40.741 11.27 0.00 44.10 2.34
247 248 6.761242 GCACATGTATTATATGGGCGATCTAA 59.239 38.462 11.27 0.00 44.10 2.10
248 249 6.280643 GCACATGTATTATATGGGCGATCTA 58.719 40.000 11.27 0.00 44.10 1.98
249 250 5.118990 GCACATGTATTATATGGGCGATCT 58.881 41.667 11.27 0.00 44.10 2.75
250 251 5.409643 GCACATGTATTATATGGGCGATC 57.590 43.478 11.27 0.00 44.10 3.69
255 256 5.645067 CACCAGAGCACATGTATTATATGGG 59.355 44.000 0.00 2.28 32.10 4.00
256 257 6.233434 ACACCAGAGCACATGTATTATATGG 58.767 40.000 0.00 4.55 0.00 2.74
257 258 9.440773 AATACACCAGAGCACATGTATTATATG 57.559 33.333 13.10 0.00 43.21 1.78
263 264 9.440773 CATTATAATACACCAGAGCACATGTAT 57.559 33.333 0.00 0.00 39.39 2.29
264 265 7.387673 GCATTATAATACACCAGAGCACATGTA 59.612 37.037 0.00 0.00 32.38 2.29
265 266 6.205464 GCATTATAATACACCAGAGCACATGT 59.795 38.462 0.00 0.00 0.00 3.21
266 267 6.205270 TGCATTATAATACACCAGAGCACATG 59.795 38.462 0.00 0.00 0.00 3.21
267 268 6.205464 GTGCATTATAATACACCAGAGCACAT 59.795 38.462 20.03 0.00 45.57 3.21
268 269 5.527214 GTGCATTATAATACACCAGAGCACA 59.473 40.000 20.03 0.00 45.57 4.57
269 270 5.990408 GTGCATTATAATACACCAGAGCAC 58.010 41.667 15.35 14.60 41.22 4.40
276 277 9.738832 AAATTTTACGGTGCATTATAATACACC 57.261 29.630 27.91 27.91 45.41 4.16
278 279 9.953697 GGAAATTTTACGGTGCATTATAATACA 57.046 29.630 0.00 0.00 0.00 2.29
279 280 9.401873 GGGAAATTTTACGGTGCATTATAATAC 57.598 33.333 0.00 0.00 0.00 1.89
280 281 9.357161 AGGGAAATTTTACGGTGCATTATAATA 57.643 29.630 0.00 0.00 0.00 0.98
281 282 8.245195 AGGGAAATTTTACGGTGCATTATAAT 57.755 30.769 0.00 0.00 0.00 1.28
282 283 7.648039 AGGGAAATTTTACGGTGCATTATAA 57.352 32.000 0.00 0.00 0.00 0.98
283 284 7.648039 AAGGGAAATTTTACGGTGCATTATA 57.352 32.000 0.00 0.00 0.00 0.98
284 285 6.538945 AAGGGAAATTTTACGGTGCATTAT 57.461 33.333 0.00 0.00 0.00 1.28
285 286 5.986501 AAGGGAAATTTTACGGTGCATTA 57.013 34.783 0.00 0.00 0.00 1.90
286 287 4.882842 AAGGGAAATTTTACGGTGCATT 57.117 36.364 0.00 0.00 0.00 3.56
287 288 4.767928 TGTAAGGGAAATTTTACGGTGCAT 59.232 37.500 0.00 0.00 33.52 3.96
288 289 4.142790 TGTAAGGGAAATTTTACGGTGCA 58.857 39.130 0.00 0.00 33.52 4.57
289 290 4.456566 TCTGTAAGGGAAATTTTACGGTGC 59.543 41.667 0.00 0.00 37.40 5.01
290 291 6.563222 TTCTGTAAGGGAAATTTTACGGTG 57.437 37.500 0.00 0.00 37.40 4.94
291 292 6.943718 TCATTCTGTAAGGGAAATTTTACGGT 59.056 34.615 0.00 0.00 37.40 4.83
292 293 7.120726 AGTCATTCTGTAAGGGAAATTTTACGG 59.879 37.037 0.00 0.00 37.45 4.02
293 294 8.040716 AGTCATTCTGTAAGGGAAATTTTACG 57.959 34.615 0.00 0.00 33.52 3.18
296 297 9.588096 ACTAAGTCATTCTGTAAGGGAAATTTT 57.412 29.630 0.00 0.00 0.00 1.82
297 298 9.588096 AACTAAGTCATTCTGTAAGGGAAATTT 57.412 29.630 0.00 0.00 0.00 1.82
298 299 9.014297 CAACTAAGTCATTCTGTAAGGGAAATT 57.986 33.333 0.00 0.00 0.00 1.82
299 300 7.611855 CCAACTAAGTCATTCTGTAAGGGAAAT 59.388 37.037 0.00 0.00 0.00 2.17
300 301 6.940298 CCAACTAAGTCATTCTGTAAGGGAAA 59.060 38.462 0.00 0.00 0.00 3.13
301 302 6.472887 CCAACTAAGTCATTCTGTAAGGGAA 58.527 40.000 0.00 0.00 0.00 3.97
302 303 5.045869 CCCAACTAAGTCATTCTGTAAGGGA 60.046 44.000 0.00 0.00 31.73 4.20
303 304 5.045869 TCCCAACTAAGTCATTCTGTAAGGG 60.046 44.000 0.00 0.00 0.00 3.95
304 305 6.049955 TCCCAACTAAGTCATTCTGTAAGG 57.950 41.667 0.00 0.00 0.00 2.69
305 306 8.478877 ACTATCCCAACTAAGTCATTCTGTAAG 58.521 37.037 0.00 0.00 0.00 2.34
381 382 2.093658 TCCGCAACTAATCTTCACCCTC 60.094 50.000 0.00 0.00 0.00 4.30
603 1302 5.125417 GGCCATTTACTATGTTGTGATGTGT 59.875 40.000 0.00 0.00 0.00 3.72
977 1765 0.171231 GGGCGAAACAAAGCAGATCC 59.829 55.000 0.00 0.00 34.54 3.36
1115 1906 3.577313 GGCGAGAAAGCGATGCCC 61.577 66.667 0.00 0.00 39.83 5.36
1126 1917 2.755876 ATGAGGAGCACGGCGAGA 60.756 61.111 16.62 0.00 0.00 4.04
1236 2027 1.440618 TGGCTCTGGTTTGGGTTCTA 58.559 50.000 0.00 0.00 0.00 2.10
1261 2052 3.265791 CTCTGAGTGTGGCATAGGTTTC 58.734 50.000 0.00 0.00 0.00 2.78
1362 2180 1.456196 TTTCGGTTTTGGCATCGGCA 61.456 50.000 0.00 0.00 43.71 5.69
1381 2199 1.898574 CTCGGGCTTGTGCTTTGGT 60.899 57.895 0.00 0.00 39.59 3.67
1466 2284 2.569853 TCGGTTCAGATTTAGGCTTGGA 59.430 45.455 0.00 0.00 0.00 3.53
1478 2296 1.722011 GGCTTCGATTTCGGTTCAGA 58.278 50.000 0.00 0.00 40.29 3.27
1490 2308 4.129737 CTTCGGAGGCGGCTTCGA 62.130 66.667 35.76 35.76 35.61 3.71
1515 2333 3.119137 CCATCAACTGTGAGATGTCGGTA 60.119 47.826 17.10 0.00 39.92 4.02
1523 2341 4.352893 TCAGTATCCCATCAACTGTGAGA 58.647 43.478 0.00 0.00 41.12 3.27
1598 2437 8.041323 ACAAGGAATACTACACCACTTATTCTG 58.959 37.037 0.00 0.00 33.32 3.02
1746 2614 8.461222 TGGACAAAATAGTTCATTCATGCTAAG 58.539 33.333 0.00 0.00 0.00 2.18
1792 2683 0.251386 TGCGCCCCATAGGTCAAAAA 60.251 50.000 4.18 0.00 38.26 1.94
1797 2688 0.603975 GAGATTGCGCCCCATAGGTC 60.604 60.000 4.18 0.00 38.26 3.85
1798 2689 1.056700 AGAGATTGCGCCCCATAGGT 61.057 55.000 4.18 0.00 38.26 3.08
1800 2691 0.107456 ACAGAGATTGCGCCCCATAG 59.893 55.000 4.18 0.00 0.00 2.23
1801 2692 0.106708 GACAGAGATTGCGCCCCATA 59.893 55.000 4.18 0.00 0.00 2.74
1802 2693 1.153086 GACAGAGATTGCGCCCCAT 60.153 57.895 4.18 0.00 0.00 4.00
1803 2694 0.975556 TAGACAGAGATTGCGCCCCA 60.976 55.000 4.18 0.00 0.00 4.96
1804 2695 0.394565 ATAGACAGAGATTGCGCCCC 59.605 55.000 4.18 0.00 0.00 5.80
1808 2699 2.748605 GTCCCATAGACAGAGATTGCG 58.251 52.381 0.00 0.00 45.55 4.85
1879 2808 4.014569 AGGAGTGCTTCTCTTCCTTTTC 57.985 45.455 8.78 0.00 42.40 2.29
1900 2829 9.249053 TCATTTGTGTTGCTATTTAGGGAATAA 57.751 29.630 0.00 0.00 30.07 1.40
1925 2861 0.921347 CCACGCGCACACTATACTTC 59.079 55.000 5.73 0.00 0.00 3.01
1926 2862 0.459585 CCCACGCGCACACTATACTT 60.460 55.000 5.73 0.00 0.00 2.24
2012 2955 6.299141 GGGACTTGGTTCATATGTGATATGT 58.701 40.000 1.90 0.00 42.49 2.29
2013 2956 5.409520 CGGGACTTGGTTCATATGTGATATG 59.590 44.000 1.90 0.00 43.09 1.78
2014 2957 5.306937 TCGGGACTTGGTTCATATGTGATAT 59.693 40.000 1.90 0.00 33.56 1.63
2015 2958 4.651962 TCGGGACTTGGTTCATATGTGATA 59.348 41.667 1.90 0.00 33.56 2.15
2016 2959 3.454447 TCGGGACTTGGTTCATATGTGAT 59.546 43.478 1.90 0.00 33.56 3.06
2084 3256 1.978617 GGGGAGTGCCAACATGGTG 60.979 63.158 2.91 2.91 40.46 4.17
2086 3258 1.679977 CAGGGGAGTGCCAACATGG 60.680 63.158 1.97 0.00 41.55 3.66
2087 3259 1.679977 CCAGGGGAGTGCCAACATG 60.680 63.158 1.97 0.00 35.15 3.21
2092 3264 2.204136 ATGTCCAGGGGAGTGCCA 60.204 61.111 1.97 0.00 35.15 4.92
2094 3266 1.078143 GTCATGTCCAGGGGAGTGC 60.078 63.158 0.00 0.00 29.39 4.40
2095 3267 1.200760 TGGTCATGTCCAGGGGAGTG 61.201 60.000 7.66 0.00 33.19 3.51
2096 3268 0.253347 ATGGTCATGTCCAGGGGAGT 60.253 55.000 16.79 0.00 41.05 3.85
2097 3269 0.182061 CATGGTCATGTCCAGGGGAG 59.818 60.000 16.79 1.74 41.05 4.30
2098 3270 2.310251 CATGGTCATGTCCAGGGGA 58.690 57.895 16.79 0.00 41.05 4.81
2099 3271 4.993307 CATGGTCATGTCCAGGGG 57.007 61.111 16.79 5.88 41.05 4.79
2107 3279 2.048444 CCAGGAGGAACATGGTCATG 57.952 55.000 13.90 9.19 44.34 3.07
2118 3290 0.689080 GATGAGCCAGTCCAGGAGGA 60.689 60.000 0.00 0.00 43.21 3.71
2119 3291 0.690411 AGATGAGCCAGTCCAGGAGG 60.690 60.000 0.00 0.00 0.00 4.30
2120 3292 1.134461 CAAGATGAGCCAGTCCAGGAG 60.134 57.143 0.00 0.00 0.00 3.69
2121 3293 0.907486 CAAGATGAGCCAGTCCAGGA 59.093 55.000 0.00 0.00 0.00 3.86
2122 3294 0.907486 TCAAGATGAGCCAGTCCAGG 59.093 55.000 0.00 0.00 0.00 4.45
2123 3295 2.312722 CTCAAGATGAGCCAGTCCAG 57.687 55.000 0.00 0.00 37.72 3.86
2151 3687 9.773328 TCTGCATTAATGAATTTACTTTCGAAG 57.227 29.630 19.73 0.00 0.00 3.79
2154 3690 9.003112 CACTCTGCATTAATGAATTTACTTTCG 57.997 33.333 19.73 0.00 0.00 3.46
2200 3791 6.389830 GATGGCTCGATATCTGTCATATCT 57.610 41.667 11.07 0.00 0.00 1.98
2230 3821 3.001634 CGCACTCGACTGCATCAAAATAT 59.998 43.478 15.82 0.00 36.94 1.28
2232 3823 1.129251 CGCACTCGACTGCATCAAAAT 59.871 47.619 15.82 0.00 36.94 1.82
2233 3824 0.512518 CGCACTCGACTGCATCAAAA 59.487 50.000 15.82 0.00 36.94 2.44
2237 3828 1.560923 ATAACGCACTCGACTGCATC 58.439 50.000 15.82 0.00 36.94 3.91
2246 3837 9.178427 CCTAGTTGTATAAGTTATAACGCACTC 57.822 37.037 9.91 3.70 0.00 3.51
2256 3847 6.925165 GGCGCATTACCTAGTTGTATAAGTTA 59.075 38.462 10.83 0.00 0.00 2.24
2266 3857 1.470979 CGAGTGGCGCATTACCTAGTT 60.471 52.381 10.83 0.00 0.00 2.24
2267 3858 0.102481 CGAGTGGCGCATTACCTAGT 59.898 55.000 10.83 0.00 0.00 2.57
2268 3859 0.102481 ACGAGTGGCGCATTACCTAG 59.898 55.000 10.83 0.00 46.04 3.02
2282 3873 7.633193 TTATTAAATGCCCACAATAACGAGT 57.367 32.000 0.00 0.00 0.00 4.18
2284 3875 8.226819 TCATTATTAAATGCCCACAATAACGA 57.773 30.769 0.00 0.00 41.96 3.85
2285 3876 8.864069 TTCATTATTAAATGCCCACAATAACG 57.136 30.769 0.00 0.00 41.96 3.18
2435 4165 4.563374 GCTTGTTGTAGGGCAAATGGAAAT 60.563 41.667 0.00 0.00 39.03 2.17
2482 4212 3.125316 CCCGTTGTTGAGCTATGAAGAAC 59.875 47.826 0.00 0.00 0.00 3.01
2497 4227 0.252284 AGTCCATCTCTCCCCGTTGT 60.252 55.000 0.00 0.00 0.00 3.32
2539 4667 1.038130 CGTCCATCTCTCCCCGTTCT 61.038 60.000 0.00 0.00 0.00 3.01
2540 4668 1.035932 TCGTCCATCTCTCCCCGTTC 61.036 60.000 0.00 0.00 0.00 3.95
2558 4688 3.648339 TCAGCTTCAGGCACATTTTTC 57.352 42.857 0.00 0.00 44.79 2.29
2594 4724 3.627123 ACCCAGTTTGGTTAACGTGTAAC 59.373 43.478 0.00 10.36 41.78 2.50
2611 4741 1.420138 ACCACTAGACCAAACACCCAG 59.580 52.381 0.00 0.00 0.00 4.45
2685 4815 5.521544 GCCAACAACACCGTCTAAAAATTA 58.478 37.500 0.00 0.00 0.00 1.40
2686 4816 4.364860 GCCAACAACACCGTCTAAAAATT 58.635 39.130 0.00 0.00 0.00 1.82
2703 4833 4.090588 TGGGGTCCGATCGCCAAC 62.091 66.667 10.32 7.26 45.16 3.77
2721 4851 3.181465 ACCGTCTAAATAGTGGCAGATGG 60.181 47.826 7.06 7.06 45.74 3.51
2730 4860 4.807304 CGCCAATAACACCGTCTAAATAGT 59.193 41.667 0.00 0.00 0.00 2.12
2731 4861 5.045215 TCGCCAATAACACCGTCTAAATAG 58.955 41.667 0.00 0.00 0.00 1.73
2732 4862 5.008619 TCGCCAATAACACCGTCTAAATA 57.991 39.130 0.00 0.00 0.00 1.40
2737 4867 1.801395 CGATCGCCAATAACACCGTCT 60.801 52.381 0.26 0.00 0.00 4.18
2738 4868 0.575390 CGATCGCCAATAACACCGTC 59.425 55.000 0.26 0.00 0.00 4.79
2740 4870 0.528901 TCCGATCGCCAATAACACCG 60.529 55.000 10.32 0.00 0.00 4.94
2742 4872 0.935196 GGTCCGATCGCCAATAACAC 59.065 55.000 10.32 0.00 0.00 3.32
2744 4874 0.883370 GGGGTCCGATCGCCAATAAC 60.883 60.000 10.32 0.36 39.71 1.89
2748 4878 2.132089 AAAAGGGGTCCGATCGCCAA 62.132 55.000 10.32 0.00 41.92 4.52
2750 4880 1.378119 AAAAAGGGGTCCGATCGCC 60.378 57.895 10.32 6.39 40.15 5.54
2751 4881 4.313819 AAAAAGGGGTCCGATCGC 57.686 55.556 10.32 0.00 0.00 4.58
2771 5016 5.659440 AGTAGCAGAAGAAAAGGAGAGAG 57.341 43.478 0.00 0.00 0.00 3.20
2774 5019 7.246171 ACATTAGTAGCAGAAGAAAAGGAGA 57.754 36.000 0.00 0.00 0.00 3.71
2783 5028 3.487574 GCTGCGTACATTAGTAGCAGAAG 59.512 47.826 18.30 0.00 45.25 2.85
2784 5029 3.444916 GCTGCGTACATTAGTAGCAGAA 58.555 45.455 18.30 0.00 45.25 3.02
2787 5032 1.478916 TGGCTGCGTACATTAGTAGCA 59.521 47.619 9.88 1.01 45.71 3.49
2788 5033 2.218953 TGGCTGCGTACATTAGTAGC 57.781 50.000 0.00 0.00 43.71 3.58
2789 5034 3.977427 TGATGGCTGCGTACATTAGTAG 58.023 45.455 0.00 0.00 0.00 2.57
2874 6649 9.788960 GACTGATTTCCCTTTGATTGTAATTAC 57.211 33.333 8.75 8.75 0.00 1.89
2880 6655 5.388654 AGTGACTGATTTCCCTTTGATTGT 58.611 37.500 0.00 0.00 0.00 2.71
2883 6658 6.380079 AGTAGTGACTGATTTCCCTTTGAT 57.620 37.500 0.00 0.00 33.41 2.57
2884 6659 5.825593 AGTAGTGACTGATTTCCCTTTGA 57.174 39.130 0.00 0.00 33.41 2.69
2885 6660 6.464222 TGTAGTAGTGACTGATTTCCCTTTG 58.536 40.000 0.00 0.00 36.28 2.77
2887 6662 6.644347 CATGTAGTAGTGACTGATTTCCCTT 58.356 40.000 0.00 0.00 36.28 3.95
2888 6663 5.395768 GCATGTAGTAGTGACTGATTTCCCT 60.396 44.000 0.00 0.00 36.28 4.20
2889 6664 4.811557 GCATGTAGTAGTGACTGATTTCCC 59.188 45.833 0.00 0.00 36.28 3.97
2890 6665 5.665459 AGCATGTAGTAGTGACTGATTTCC 58.335 41.667 0.00 0.00 36.28 3.13
2891 6666 7.201565 GGAAAGCATGTAGTAGTGACTGATTTC 60.202 40.741 0.00 0.00 36.28 2.17
2894 6669 5.665459 GGAAAGCATGTAGTAGTGACTGAT 58.335 41.667 0.00 0.00 36.28 2.90
2895 6670 4.380550 CGGAAAGCATGTAGTAGTGACTGA 60.381 45.833 0.00 0.00 36.28 3.41
2896 6671 3.859961 CGGAAAGCATGTAGTAGTGACTG 59.140 47.826 0.00 0.00 36.28 3.51
2912 6687 1.081892 CTGGACTCACATGCGGAAAG 58.918 55.000 0.00 0.00 0.00 2.62
2915 6690 1.902765 ATGCTGGACTCACATGCGGA 61.903 55.000 0.00 0.00 0.00 5.54
2916 6691 1.450848 ATGCTGGACTCACATGCGG 60.451 57.895 0.00 0.00 0.00 5.69
2917 6692 1.719709 CATGCTGGACTCACATGCG 59.280 57.895 0.00 0.00 35.24 4.73
2949 6724 2.740668 GGCACATGCGGAATTGTTG 58.259 52.632 0.00 0.00 43.26 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.