Multiple sequence alignment - TraesCS4D01G010300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G010300 chr4D 100.000 3056 0 0 1 3056 4801289 4798234 0.000000e+00 5644.0
1 TraesCS4D01G010300 chr4D 92.000 50 4 0 642 691 476860739 476860788 1.520000e-08 71.3
2 TraesCS4D01G010300 chr4B 90.845 1409 56 32 714 2061 7832114 7830718 0.000000e+00 1820.0
3 TraesCS4D01G010300 chr4B 84.254 489 25 15 2395 2861 7830352 7829894 2.180000e-116 429.0
4 TraesCS4D01G010300 chr4A 92.481 1197 43 20 994 2164 598731948 598730773 0.000000e+00 1668.0
5 TraesCS4D01G010300 chr4A 82.184 696 46 26 2199 2861 598730769 598730119 7.500000e-146 527.0
6 TraesCS4D01G010300 chr4A 92.333 300 20 3 700 997 598732275 598731977 1.010000e-114 424.0
7 TraesCS4D01G010300 chr6B 93.294 507 25 4 1549 2055 134669882 134670379 0.000000e+00 739.0
8 TraesCS4D01G010300 chr6B 77.849 465 60 19 75 526 718978304 718977870 6.540000e-62 248.0
9 TraesCS4D01G010300 chr6B 84.426 122 11 6 405 523 13706749 13706865 2.490000e-21 113.0
10 TraesCS4D01G010300 chr3B 81.470 653 81 18 1 642 241933972 241933349 1.640000e-137 499.0
11 TraesCS4D01G010300 chr3B 91.304 69 5 1 442 510 625338085 625338018 3.240000e-15 93.5
12 TraesCS4D01G010300 chr3B 96.970 33 1 0 659 691 451545945 451545913 4.260000e-04 56.5
13 TraesCS4D01G010300 chr3B 100.000 28 0 0 655 682 102971724 102971751 6.000000e-03 52.8
14 TraesCS4D01G010300 chr5B 80.032 616 100 12 1 596 559699005 559699617 4.680000e-118 435.0
15 TraesCS4D01G010300 chr5B 88.525 61 3 3 631 691 656019896 656019952 1.520000e-08 71.3
16 TraesCS4D01G010300 chr3D 84.430 456 54 11 15 455 165940096 165939643 1.680000e-117 433.0
17 TraesCS4D01G010300 chr5D 77.891 294 51 14 405 691 63093529 63093815 1.460000e-38 171.0
18 TraesCS4D01G010300 chr5D 97.059 34 1 0 658 691 416433062 416433029 1.180000e-04 58.4
19 TraesCS4D01G010300 chr2D 81.529 157 13 10 357 507 36265368 36265514 6.920000e-22 115.0
20 TraesCS4D01G010300 chr7A 89.412 85 9 0 336 420 183646893 183646977 1.160000e-19 108.0
21 TraesCS4D01G010300 chr2B 87.838 74 7 2 442 515 620856297 620856368 5.430000e-13 86.1
22 TraesCS4D01G010300 chr2A 86.076 79 6 5 434 509 558943486 558943562 2.530000e-11 80.5
23 TraesCS4D01G010300 chr7D 76.552 145 30 4 555 697 141228371 141228229 3.270000e-10 76.8
24 TraesCS4D01G010300 chr6D 79.612 103 21 0 589 691 163134652 163134754 1.180000e-09 75.0
25 TraesCS4D01G010300 chr6D 90.698 43 4 0 649 691 378734527 378734569 1.180000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G010300 chr4D 4798234 4801289 3055 True 5644.0 5644 100.000000 1 3056 1 chr4D.!!$R1 3055
1 TraesCS4D01G010300 chr4B 7829894 7832114 2220 True 1124.5 1820 87.549500 714 2861 2 chr4B.!!$R1 2147
2 TraesCS4D01G010300 chr4A 598730119 598732275 2156 True 873.0 1668 88.999333 700 2861 3 chr4A.!!$R1 2161
3 TraesCS4D01G010300 chr3B 241933349 241933972 623 True 499.0 499 81.470000 1 642 1 chr3B.!!$R1 641
4 TraesCS4D01G010300 chr5B 559699005 559699617 612 False 435.0 435 80.032000 1 596 1 chr5B.!!$F1 595

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
658 659 0.026156 AAAAAGCAAACAAAGCGCGC 59.974 45.0 26.66 26.66 37.01 6.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2369 2549 0.251341 ACTCCATTTGGAAGCCGCTT 60.251 50.0 4.98 4.98 44.91 4.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 2.280592 GTGGTTCGCGAGTGGGTT 60.281 61.111 9.59 0.00 0.00 4.11
93 94 4.919987 GCGCCGCCCGTCTAGTAC 62.920 72.222 0.00 0.00 39.71 2.73
102 103 3.909662 GTCTAGTACGGGGCGACA 58.090 61.111 0.00 0.00 0.00 4.35
103 104 1.431036 GTCTAGTACGGGGCGACAC 59.569 63.158 0.00 0.00 0.00 3.67
104 105 1.750399 TCTAGTACGGGGCGACACC 60.750 63.158 0.00 0.00 37.93 4.16
114 115 4.373116 GCGACACCGGAGCAGGAA 62.373 66.667 9.46 0.00 36.06 3.36
115 116 2.125912 CGACACCGGAGCAGGAAG 60.126 66.667 9.46 0.00 34.73 3.46
116 117 2.435059 GACACCGGAGCAGGAAGC 60.435 66.667 9.46 0.00 46.19 3.86
126 127 4.785453 CAGGAAGCCGCCCACCTC 62.785 72.222 0.00 0.00 0.00 3.85
129 130 4.388499 GAAGCCGCCCACCTCGAA 62.388 66.667 0.00 0.00 0.00 3.71
130 131 4.699522 AAGCCGCCCACCTCGAAC 62.700 66.667 0.00 0.00 0.00 3.95
132 133 4.778143 GCCGCCCACCTCGAACAT 62.778 66.667 0.00 0.00 0.00 2.71
133 134 2.046314 CCGCCCACCTCGAACATT 60.046 61.111 0.00 0.00 0.00 2.71
134 135 2.398554 CCGCCCACCTCGAACATTG 61.399 63.158 0.00 0.00 0.00 2.82
135 136 2.398554 CGCCCACCTCGAACATTGG 61.399 63.158 0.00 0.00 0.00 3.16
136 137 1.002624 GCCCACCTCGAACATTGGA 60.003 57.895 3.44 0.00 0.00 3.53
137 138 0.608035 GCCCACCTCGAACATTGGAA 60.608 55.000 3.44 0.00 0.00 3.53
138 139 1.453155 CCCACCTCGAACATTGGAAG 58.547 55.000 3.44 0.00 0.00 3.46
139 140 1.453155 CCACCTCGAACATTGGAAGG 58.547 55.000 0.00 0.00 0.00 3.46
140 141 0.804989 CACCTCGAACATTGGAAGGC 59.195 55.000 0.00 0.00 0.00 4.35
141 142 0.673644 ACCTCGAACATTGGAAGGCG 60.674 55.000 0.00 0.00 0.00 5.52
142 143 1.425428 CTCGAACATTGGAAGGCGC 59.575 57.895 0.00 0.00 0.00 6.53
143 144 1.298157 CTCGAACATTGGAAGGCGCA 61.298 55.000 10.83 0.00 0.00 6.09
144 145 1.154225 CGAACATTGGAAGGCGCAC 60.154 57.895 10.83 0.00 0.00 5.34
145 146 1.212751 GAACATTGGAAGGCGCACC 59.787 57.895 10.83 10.28 0.00 5.01
146 147 2.527547 GAACATTGGAAGGCGCACCG 62.528 60.000 10.83 0.00 42.76 4.94
147 148 3.814268 CATTGGAAGGCGCACCGG 61.814 66.667 10.83 0.00 42.76 5.28
182 183 4.933064 CGTGGCGAGCGGGAGATC 62.933 72.222 0.00 0.00 42.99 2.75
188 189 2.334653 GAGCGGGAGATCGAGCTG 59.665 66.667 8.50 0.00 40.39 4.24
189 190 3.206211 GAGCGGGAGATCGAGCTGG 62.206 68.421 8.50 0.00 40.39 4.85
190 191 3.219928 GCGGGAGATCGAGCTGGA 61.220 66.667 8.50 0.00 0.00 3.86
191 192 3.038280 CGGGAGATCGAGCTGGAG 58.962 66.667 8.50 0.00 0.00 3.86
192 193 2.733945 GGGAGATCGAGCTGGAGC 59.266 66.667 8.50 5.78 42.49 4.70
228 229 3.531207 CGGAGGAGCGCATGGAGA 61.531 66.667 11.47 0.00 0.00 3.71
229 230 2.420890 GGAGGAGCGCATGGAGAG 59.579 66.667 11.47 0.00 0.00 3.20
230 231 2.420890 GAGGAGCGCATGGAGAGG 59.579 66.667 11.47 0.00 0.00 3.69
231 232 3.160047 AGGAGCGCATGGAGAGGG 61.160 66.667 11.47 0.00 0.00 4.30
232 233 3.157252 GGAGCGCATGGAGAGGGA 61.157 66.667 11.47 0.00 0.00 4.20
233 234 2.420890 GAGCGCATGGAGAGGGAG 59.579 66.667 11.47 0.00 0.00 4.30
234 235 3.160047 AGCGCATGGAGAGGGAGG 61.160 66.667 11.47 0.00 0.00 4.30
235 236 3.474570 GCGCATGGAGAGGGAGGT 61.475 66.667 0.30 0.00 0.00 3.85
236 237 2.503061 CGCATGGAGAGGGAGGTG 59.497 66.667 0.00 0.00 0.00 4.00
237 238 2.914289 GCATGGAGAGGGAGGTGG 59.086 66.667 0.00 0.00 0.00 4.61
238 239 1.690633 GCATGGAGAGGGAGGTGGA 60.691 63.158 0.00 0.00 0.00 4.02
239 240 1.694133 GCATGGAGAGGGAGGTGGAG 61.694 65.000 0.00 0.00 0.00 3.86
240 241 1.053264 CATGGAGAGGGAGGTGGAGG 61.053 65.000 0.00 0.00 0.00 4.30
241 242 1.231751 ATGGAGAGGGAGGTGGAGGA 61.232 60.000 0.00 0.00 0.00 3.71
242 243 1.075600 GGAGAGGGAGGTGGAGGAG 60.076 68.421 0.00 0.00 0.00 3.69
243 244 1.760480 GAGAGGGAGGTGGAGGAGC 60.760 68.421 0.00 0.00 0.00 4.70
244 245 3.151022 GAGGGAGGTGGAGGAGCG 61.151 72.222 0.00 0.00 0.00 5.03
245 246 3.966930 GAGGGAGGTGGAGGAGCGT 62.967 68.421 0.00 0.00 0.00 5.07
246 247 3.775654 GGGAGGTGGAGGAGCGTG 61.776 72.222 0.00 0.00 0.00 5.34
247 248 4.459089 GGAGGTGGAGGAGCGTGC 62.459 72.222 0.00 0.00 0.00 5.34
248 249 4.459089 GAGGTGGAGGAGCGTGCC 62.459 72.222 0.00 0.00 0.00 5.01
254 255 3.755628 GAGGAGCGTGCCCGTGTA 61.756 66.667 0.00 0.00 36.15 2.90
255 256 3.701604 GAGGAGCGTGCCCGTGTAG 62.702 68.421 0.00 0.00 36.15 2.74
266 267 3.481903 CGTGTAGCGGCAGTGCAG 61.482 66.667 18.61 14.87 37.31 4.41
311 312 4.803426 GCTGGACAGACGGCGGAG 62.803 72.222 13.24 2.48 32.35 4.63
312 313 4.135153 CTGGACAGACGGCGGAGG 62.135 72.222 13.24 1.60 0.00 4.30
332 333 4.783621 GCGGTGCTGCATGGGAGA 62.784 66.667 5.27 0.00 34.15 3.71
333 334 2.513204 CGGTGCTGCATGGGAGAG 60.513 66.667 5.27 0.00 0.00 3.20
334 335 2.827642 GGTGCTGCATGGGAGAGC 60.828 66.667 5.27 0.00 0.00 4.09
335 336 3.200593 GTGCTGCATGGGAGAGCG 61.201 66.667 5.27 0.00 35.36 5.03
337 338 4.853050 GCTGCATGGGAGAGCGCT 62.853 66.667 11.27 11.27 0.00 5.92
338 339 2.124819 CTGCATGGGAGAGCGCTT 60.125 61.111 13.26 0.58 0.00 4.68
339 340 1.748122 CTGCATGGGAGAGCGCTTT 60.748 57.895 13.26 5.40 0.00 3.51
340 341 1.712977 CTGCATGGGAGAGCGCTTTC 61.713 60.000 19.14 19.14 0.00 2.62
341 342 2.476320 GCATGGGAGAGCGCTTTCC 61.476 63.158 33.25 33.25 0.00 3.13
344 345 3.403558 GGGAGAGCGCTTTCCCCT 61.404 66.667 42.56 23.29 46.15 4.79
345 346 2.124942 GGAGAGCGCTTTCCCCTG 60.125 66.667 31.59 0.00 0.00 4.45
346 347 2.124942 GAGAGCGCTTTCCCCTGG 60.125 66.667 16.78 0.00 0.00 4.45
347 348 3.689002 GAGAGCGCTTTCCCCTGGG 62.689 68.421 16.78 5.50 0.00 4.45
352 353 4.766632 GCTTTCCCCTGGGCTGGG 62.767 72.222 7.39 8.77 46.68 4.45
353 354 4.766632 CTTTCCCCTGGGCTGGGC 62.767 72.222 7.39 0.00 45.78 5.36
375 376 4.814294 GCCGGCGTTCATCGACCT 62.814 66.667 12.58 0.00 46.11 3.85
376 377 2.582498 CCGGCGTTCATCGACCTC 60.582 66.667 6.01 0.00 46.11 3.85
377 378 2.180769 CGGCGTTCATCGACCTCA 59.819 61.111 0.00 0.00 46.11 3.86
378 379 2.158959 CGGCGTTCATCGACCTCAC 61.159 63.158 0.00 0.00 46.11 3.51
379 380 1.810030 GGCGTTCATCGACCTCACC 60.810 63.158 0.00 0.00 42.54 4.02
380 381 2.158959 GCGTTCATCGACCTCACCG 61.159 63.158 0.00 0.00 42.86 4.94
381 382 1.516386 CGTTCATCGACCTCACCGG 60.516 63.158 0.00 0.00 42.86 5.28
382 383 1.810030 GTTCATCGACCTCACCGGC 60.810 63.158 0.00 0.00 35.61 6.13
383 384 3.014085 TTCATCGACCTCACCGGCC 62.014 63.158 0.00 0.00 35.61 6.13
384 385 4.530857 CATCGACCTCACCGGCCC 62.531 72.222 0.00 0.00 35.61 5.80
400 401 4.862823 CCCGGGGAGGAGGAGGAC 62.863 77.778 14.71 0.00 45.00 3.85
402 403 4.124943 CGGGGAGGAGGAGGACGA 62.125 72.222 0.00 0.00 0.00 4.20
403 404 2.442458 GGGGAGGAGGAGGACGAC 60.442 72.222 0.00 0.00 0.00 4.34
404 405 2.829458 GGGAGGAGGAGGACGACG 60.829 72.222 0.00 0.00 0.00 5.12
405 406 2.271497 GGAGGAGGAGGACGACGA 59.729 66.667 0.00 0.00 0.00 4.20
406 407 2.114051 GGAGGAGGAGGACGACGAC 61.114 68.421 0.00 0.00 0.00 4.34
407 408 2.436292 AGGAGGAGGACGACGACG 60.436 66.667 5.58 5.58 45.75 5.12
408 409 4.176851 GGAGGAGGACGACGACGC 62.177 72.222 7.30 0.07 43.96 5.19
409 410 4.176851 GAGGAGGACGACGACGCC 62.177 72.222 7.30 9.71 43.96 5.68
410 411 4.719106 AGGAGGACGACGACGCCT 62.719 66.667 18.84 18.84 44.07 5.52
411 412 2.821366 GGAGGACGACGACGCCTA 60.821 66.667 18.81 0.00 42.53 3.93
412 413 2.708255 GAGGACGACGACGCCTAG 59.292 66.667 18.81 0.00 42.53 3.02
413 414 2.821688 GAGGACGACGACGCCTAGG 61.822 68.421 18.81 3.67 42.53 3.02
414 415 3.885521 GGACGACGACGCCTAGGG 61.886 72.222 11.72 3.13 43.96 3.53
415 416 4.549516 GACGACGACGCCTAGGGC 62.550 72.222 11.72 1.76 46.75 5.19
425 426 3.774528 CCTAGGGCAGCGTGCTGA 61.775 66.667 25.09 3.48 46.30 4.26
431 432 3.352222 GCAGCGTGCTGACAGCTT 61.352 61.111 26.94 8.51 46.30 3.74
432 433 2.029288 GCAGCGTGCTGACAGCTTA 61.029 57.895 26.94 6.17 46.30 3.09
433 434 1.784062 CAGCGTGCTGACAGCTTAC 59.216 57.895 26.94 16.97 46.30 2.34
434 435 0.668706 CAGCGTGCTGACAGCTTACT 60.669 55.000 26.94 17.65 46.30 2.24
435 436 0.034059 AGCGTGCTGACAGCTTACTT 59.966 50.000 26.94 7.49 42.97 2.24
436 437 0.868406 GCGTGCTGACAGCTTACTTT 59.132 50.000 26.94 0.00 42.97 2.66
437 438 1.264288 GCGTGCTGACAGCTTACTTTT 59.736 47.619 26.94 0.00 42.97 2.27
438 439 2.287009 GCGTGCTGACAGCTTACTTTTT 60.287 45.455 26.94 0.00 42.97 1.94
468 469 9.699703 TTTATTAATGTTTAAGTGGACTTTGCC 57.300 29.630 0.00 0.00 37.40 4.52
469 470 4.600692 AATGTTTAAGTGGACTTTGCCC 57.399 40.909 0.00 0.00 37.40 5.36
470 471 1.950909 TGTTTAAGTGGACTTTGCCCG 59.049 47.619 0.00 0.00 37.40 6.13
471 472 1.268625 GTTTAAGTGGACTTTGCCCGG 59.731 52.381 0.00 0.00 37.40 5.73
472 473 0.891904 TTAAGTGGACTTTGCCCGGC 60.892 55.000 1.04 1.04 37.40 6.13
473 474 2.058125 TAAGTGGACTTTGCCCGGCA 62.058 55.000 8.43 8.43 37.40 5.69
474 475 3.365265 GTGGACTTTGCCCGGCAG 61.365 66.667 12.95 4.53 40.61 4.85
475 476 4.659172 TGGACTTTGCCCGGCAGG 62.659 66.667 12.95 12.05 40.61 4.85
476 477 4.660938 GGACTTTGCCCGGCAGGT 62.661 66.667 12.95 15.18 40.61 4.00
477 478 2.597510 GACTTTGCCCGGCAGGTT 60.598 61.111 12.95 0.00 40.61 3.50
478 479 2.912025 ACTTTGCCCGGCAGGTTG 60.912 61.111 12.95 6.82 40.61 3.77
479 480 2.597217 CTTTGCCCGGCAGGTTGA 60.597 61.111 12.95 0.00 40.61 3.18
480 481 2.909965 TTTGCCCGGCAGGTTGAC 60.910 61.111 12.95 0.00 40.61 3.18
481 482 4.966787 TTGCCCGGCAGGTTGACC 62.967 66.667 12.95 0.00 40.61 4.02
489 490 4.095590 CAGGTTGACCGGCCATTT 57.904 55.556 0.00 0.00 42.08 2.32
490 491 3.257935 CAGGTTGACCGGCCATTTA 57.742 52.632 0.00 0.00 42.08 1.40
491 492 1.762708 CAGGTTGACCGGCCATTTAT 58.237 50.000 0.00 0.00 42.08 1.40
492 493 1.405105 CAGGTTGACCGGCCATTTATG 59.595 52.381 0.00 0.00 42.08 1.90
493 494 1.005450 AGGTTGACCGGCCATTTATGT 59.995 47.619 0.00 0.00 42.08 2.29
494 495 1.822371 GGTTGACCGGCCATTTATGTT 59.178 47.619 0.00 0.00 0.00 2.71
495 496 2.232696 GGTTGACCGGCCATTTATGTTT 59.767 45.455 0.00 0.00 0.00 2.83
496 497 3.444388 GGTTGACCGGCCATTTATGTTTA 59.556 43.478 0.00 0.00 0.00 2.01
497 498 4.082136 GGTTGACCGGCCATTTATGTTTAA 60.082 41.667 0.00 0.00 0.00 1.52
498 499 5.394773 GGTTGACCGGCCATTTATGTTTAAT 60.395 40.000 0.00 0.00 0.00 1.40
499 500 5.923733 TGACCGGCCATTTATGTTTAATT 57.076 34.783 0.00 0.00 0.00 1.40
500 501 7.259161 GTTGACCGGCCATTTATGTTTAATTA 58.741 34.615 0.00 0.00 0.00 1.40
501 502 7.589958 TGACCGGCCATTTATGTTTAATTAT 57.410 32.000 0.00 0.00 0.00 1.28
502 503 7.429633 TGACCGGCCATTTATGTTTAATTATG 58.570 34.615 0.00 0.00 0.00 1.90
503 504 6.220201 ACCGGCCATTTATGTTTAATTATGC 58.780 36.000 0.00 0.00 0.00 3.14
504 505 6.041523 ACCGGCCATTTATGTTTAATTATGCT 59.958 34.615 0.00 0.00 0.00 3.79
505 506 6.928492 CCGGCCATTTATGTTTAATTATGCTT 59.072 34.615 2.24 0.00 0.00 3.91
506 507 8.085296 CCGGCCATTTATGTTTAATTATGCTTA 58.915 33.333 2.24 0.00 0.00 3.09
507 508 9.638239 CGGCCATTTATGTTTAATTATGCTTAT 57.362 29.630 2.24 0.00 0.00 1.73
516 517 8.413899 TGTTTAATTATGCTTATTTTTCGCCC 57.586 30.769 0.00 0.00 0.00 6.13
517 518 7.221067 TGTTTAATTATGCTTATTTTTCGCCCG 59.779 33.333 0.00 0.00 0.00 6.13
518 519 2.766970 TATGCTTATTTTTCGCCCGC 57.233 45.000 0.00 0.00 0.00 6.13
519 520 0.248458 ATGCTTATTTTTCGCCCGCG 60.248 50.000 0.00 0.00 41.35 6.46
520 521 1.135939 GCTTATTTTTCGCCCGCGT 59.864 52.632 4.92 0.00 40.74 6.01
521 522 1.131618 GCTTATTTTTCGCCCGCGTG 61.132 55.000 4.92 0.00 40.74 5.34
522 523 0.167251 CTTATTTTTCGCCCGCGTGT 59.833 50.000 4.92 0.00 40.74 4.49
523 524 0.110147 TTATTTTTCGCCCGCGTGTG 60.110 50.000 4.92 0.00 40.74 3.82
524 525 1.229315 TATTTTTCGCCCGCGTGTGT 61.229 50.000 4.92 0.00 40.74 3.72
525 526 1.229315 ATTTTTCGCCCGCGTGTGTA 61.229 50.000 4.92 0.00 40.74 2.90
526 527 2.103581 TTTTTCGCCCGCGTGTGTAC 62.104 55.000 4.92 0.00 40.74 2.90
552 553 2.665520 TTTTTACGGCCGCTCGCA 60.666 55.556 28.58 3.45 40.31 5.10
553 554 2.036006 TTTTTACGGCCGCTCGCAT 61.036 52.632 28.58 7.06 40.31 4.73
554 555 0.740164 TTTTTACGGCCGCTCGCATA 60.740 50.000 28.58 5.81 40.31 3.14
555 556 0.740164 TTTTACGGCCGCTCGCATAA 60.740 50.000 28.58 12.61 40.31 1.90
556 557 0.531090 TTTACGGCCGCTCGCATAAT 60.531 50.000 28.58 4.37 40.31 1.28
557 558 0.531090 TTACGGCCGCTCGCATAATT 60.531 50.000 28.58 3.48 40.31 1.40
558 559 1.218875 TACGGCCGCTCGCATAATTG 61.219 55.000 28.58 0.00 40.31 2.32
559 560 2.639286 GGCCGCTCGCATAATTGG 59.361 61.111 0.00 0.00 40.31 3.16
560 561 2.639286 GCCGCTCGCATAATTGGG 59.361 61.111 0.00 0.00 37.47 4.12
561 562 2.186826 GCCGCTCGCATAATTGGGT 61.187 57.895 0.00 0.00 37.12 4.51
562 563 1.941812 CCGCTCGCATAATTGGGTC 59.058 57.895 0.00 0.00 37.12 4.46
563 564 0.532862 CCGCTCGCATAATTGGGTCT 60.533 55.000 0.00 0.00 37.12 3.85
564 565 0.583438 CGCTCGCATAATTGGGTCTG 59.417 55.000 0.00 0.00 37.12 3.51
565 566 0.308993 GCTCGCATAATTGGGTCTGC 59.691 55.000 0.00 0.00 37.12 4.26
566 567 0.947244 CTCGCATAATTGGGTCTGCC 59.053 55.000 0.00 0.00 37.12 4.85
567 568 0.254462 TCGCATAATTGGGTCTGCCA 59.746 50.000 0.00 0.00 37.12 4.92
568 569 0.381801 CGCATAATTGGGTCTGCCAC 59.618 55.000 0.00 0.00 36.17 5.01
569 570 0.746659 GCATAATTGGGTCTGCCACC 59.253 55.000 0.00 0.00 45.97 4.61
587 588 4.690719 CGTTGGGCGCACCTACCA 62.691 66.667 7.46 1.75 41.26 3.25
588 589 2.281900 GTTGGGCGCACCTACCAA 60.282 61.111 7.46 9.36 41.66 3.67
589 590 2.281900 TTGGGCGCACCTACCAAC 60.282 61.111 7.46 0.00 39.22 3.77
590 591 3.853698 TTGGGCGCACCTACCAACC 62.854 63.158 7.46 0.00 39.22 3.77
592 593 4.338710 GGCGCACCTACCAACCCA 62.339 66.667 10.83 0.00 0.00 4.51
593 594 2.281900 GCGCACCTACCAACCCAA 60.282 61.111 0.30 0.00 0.00 4.12
594 595 1.899534 GCGCACCTACCAACCCAAA 60.900 57.895 0.30 0.00 0.00 3.28
595 596 1.248101 GCGCACCTACCAACCCAAAT 61.248 55.000 0.30 0.00 0.00 2.32
596 597 0.525761 CGCACCTACCAACCCAAATG 59.474 55.000 0.00 0.00 0.00 2.32
597 598 1.884497 CGCACCTACCAACCCAAATGA 60.884 52.381 0.00 0.00 0.00 2.57
598 599 1.818674 GCACCTACCAACCCAAATGAG 59.181 52.381 0.00 0.00 0.00 2.90
599 600 2.554344 GCACCTACCAACCCAAATGAGA 60.554 50.000 0.00 0.00 0.00 3.27
600 601 3.761897 CACCTACCAACCCAAATGAGAA 58.238 45.455 0.00 0.00 0.00 2.87
601 602 4.148838 CACCTACCAACCCAAATGAGAAA 58.851 43.478 0.00 0.00 0.00 2.52
602 603 4.586841 CACCTACCAACCCAAATGAGAAAA 59.413 41.667 0.00 0.00 0.00 2.29
603 604 4.587262 ACCTACCAACCCAAATGAGAAAAC 59.413 41.667 0.00 0.00 0.00 2.43
604 605 3.726291 ACCAACCCAAATGAGAAAACG 57.274 42.857 0.00 0.00 0.00 3.60
605 606 2.364002 ACCAACCCAAATGAGAAAACGG 59.636 45.455 0.00 0.00 0.00 4.44
606 607 2.625790 CCAACCCAAATGAGAAAACGGA 59.374 45.455 0.00 0.00 0.00 4.69
607 608 3.552068 CCAACCCAAATGAGAAAACGGAC 60.552 47.826 0.00 0.00 0.00 4.79
608 609 2.938838 ACCCAAATGAGAAAACGGACA 58.061 42.857 0.00 0.00 0.00 4.02
609 610 2.621526 ACCCAAATGAGAAAACGGACAC 59.378 45.455 0.00 0.00 0.00 3.67
611 612 2.546368 CCAAATGAGAAAACGGACACGA 59.454 45.455 0.00 0.00 44.60 4.35
612 613 3.541711 CAAATGAGAAAACGGACACGAC 58.458 45.455 0.00 0.00 44.60 4.34
613 614 1.792006 ATGAGAAAACGGACACGACC 58.208 50.000 0.00 0.00 44.60 4.79
621 622 4.353437 GGACACGACCGTCCGCTT 62.353 66.667 7.48 0.00 45.77 4.68
622 623 3.103911 GACACGACCGTCCGCTTG 61.104 66.667 0.00 0.00 0.00 4.01
623 624 4.657824 ACACGACCGTCCGCTTGG 62.658 66.667 0.00 0.00 0.00 3.61
639 640 3.857038 GGCCGGCCCGAACAGATA 61.857 66.667 36.64 0.00 0.00 1.98
640 641 2.188469 GCCGGCCCGAACAGATAA 59.812 61.111 18.11 0.00 0.00 1.75
641 642 1.450669 GCCGGCCCGAACAGATAAA 60.451 57.895 18.11 0.00 0.00 1.40
642 643 1.027792 GCCGGCCCGAACAGATAAAA 61.028 55.000 18.11 0.00 0.00 1.52
643 644 1.455248 CCGGCCCGAACAGATAAAAA 58.545 50.000 3.71 0.00 0.00 1.94
644 645 1.400494 CCGGCCCGAACAGATAAAAAG 59.600 52.381 3.71 0.00 0.00 2.27
645 646 1.202143 CGGCCCGAACAGATAAAAAGC 60.202 52.381 0.00 0.00 0.00 3.51
646 647 1.816224 GGCCCGAACAGATAAAAAGCA 59.184 47.619 0.00 0.00 0.00 3.91
647 648 2.230266 GGCCCGAACAGATAAAAAGCAA 59.770 45.455 0.00 0.00 0.00 3.91
648 649 3.305744 GGCCCGAACAGATAAAAAGCAAA 60.306 43.478 0.00 0.00 0.00 3.68
649 650 3.673338 GCCCGAACAGATAAAAAGCAAAC 59.327 43.478 0.00 0.00 0.00 2.93
650 651 4.794655 GCCCGAACAGATAAAAAGCAAACA 60.795 41.667 0.00 0.00 0.00 2.83
651 652 5.285651 CCCGAACAGATAAAAAGCAAACAA 58.714 37.500 0.00 0.00 0.00 2.83
652 653 5.751028 CCCGAACAGATAAAAAGCAAACAAA 59.249 36.000 0.00 0.00 0.00 2.83
653 654 6.074356 CCCGAACAGATAAAAAGCAAACAAAG 60.074 38.462 0.00 0.00 0.00 2.77
654 655 6.347110 CGAACAGATAAAAAGCAAACAAAGC 58.653 36.000 0.00 0.00 0.00 3.51
655 656 5.888412 ACAGATAAAAAGCAAACAAAGCG 57.112 34.783 0.00 0.00 37.01 4.68
656 657 4.209080 ACAGATAAAAAGCAAACAAAGCGC 59.791 37.500 0.00 0.00 37.01 5.92
657 658 3.425193 AGATAAAAAGCAAACAAAGCGCG 59.575 39.130 0.00 0.00 37.01 6.86
658 659 0.026156 AAAAAGCAAACAAAGCGCGC 59.974 45.000 26.66 26.66 37.01 6.86
659 660 2.076646 AAAAGCAAACAAAGCGCGCG 62.077 50.000 28.44 28.44 37.01 6.86
660 661 3.749735 AAGCAAACAAAGCGCGCGT 62.750 52.632 32.35 21.73 37.01 6.01
661 662 3.319316 GCAAACAAAGCGCGCGTT 61.319 55.556 32.35 26.36 0.00 4.84
662 663 2.829834 CAAACAAAGCGCGCGTTC 59.170 55.556 32.35 16.02 0.00 3.95
663 664 1.936880 CAAACAAAGCGCGCGTTCA 60.937 52.632 32.35 0.00 0.00 3.18
664 665 1.008995 AAACAAAGCGCGCGTTCAT 60.009 47.368 32.35 17.38 0.00 2.57
665 666 0.593773 AAACAAAGCGCGCGTTCATT 60.594 45.000 32.35 21.90 0.00 2.57
666 667 0.593773 AACAAAGCGCGCGTTCATTT 60.594 45.000 32.35 22.23 0.00 2.32
667 668 1.268113 ACAAAGCGCGCGTTCATTTG 61.268 50.000 30.92 30.92 37.00 2.32
668 669 1.729131 AAAGCGCGCGTTCATTTGG 60.729 52.632 32.35 0.00 0.00 3.28
669 670 2.123988 AAAGCGCGCGTTCATTTGGA 62.124 50.000 32.35 0.00 0.00 3.53
670 671 1.922135 AAGCGCGCGTTCATTTGGAT 61.922 50.000 32.35 4.24 0.00 3.41
671 672 1.934476 GCGCGCGTTCATTTGGATC 60.934 57.895 32.35 5.70 0.00 3.36
672 673 1.648165 CGCGCGTTCATTTGGATCG 60.648 57.895 24.19 0.00 40.76 3.69
673 674 1.297598 GCGCGTTCATTTGGATCGG 60.298 57.895 8.43 0.00 38.76 4.18
674 675 1.297598 CGCGTTCATTTGGATCGGC 60.298 57.895 0.00 0.00 38.76 5.54
675 676 1.297598 GCGTTCATTTGGATCGGCG 60.298 57.895 0.00 0.00 38.76 6.46
676 677 1.297598 CGTTCATTTGGATCGGCGC 60.298 57.895 0.00 0.00 35.56 6.53
677 678 1.297598 GTTCATTTGGATCGGCGCG 60.298 57.895 0.00 0.00 0.00 6.86
678 679 1.743623 TTCATTTGGATCGGCGCGT 60.744 52.632 8.43 0.00 0.00 6.01
679 680 1.302383 TTCATTTGGATCGGCGCGTT 61.302 50.000 8.43 0.00 0.00 4.84
680 681 1.583451 CATTTGGATCGGCGCGTTG 60.583 57.895 8.43 0.00 0.00 4.10
681 682 2.760159 ATTTGGATCGGCGCGTTGG 61.760 57.895 8.43 0.00 0.00 3.77
682 683 3.885538 TTTGGATCGGCGCGTTGGA 62.886 57.895 8.43 2.80 0.00 3.53
683 684 4.812476 TGGATCGGCGCGTTGGAG 62.812 66.667 8.43 0.00 0.00 3.86
684 685 4.814294 GGATCGGCGCGTTGGAGT 62.814 66.667 8.43 0.00 0.00 3.85
685 686 2.813908 GATCGGCGCGTTGGAGTT 60.814 61.111 8.43 0.00 0.00 3.01
686 687 3.083600 GATCGGCGCGTTGGAGTTG 62.084 63.158 8.43 0.00 0.00 3.16
689 690 4.090057 GGCGCGTTGGAGTTGCTC 62.090 66.667 8.43 0.00 0.00 4.26
690 691 3.044305 GCGCGTTGGAGTTGCTCT 61.044 61.111 8.43 0.00 0.00 4.09
691 692 3.016474 GCGCGTTGGAGTTGCTCTC 62.016 63.158 8.43 1.79 42.07 3.20
692 693 2.720758 CGCGTTGGAGTTGCTCTCG 61.721 63.158 0.00 0.00 43.60 4.04
693 694 2.383527 GCGTTGGAGTTGCTCTCGG 61.384 63.158 4.07 0.00 43.60 4.63
694 695 1.006102 CGTTGGAGTTGCTCTCGGT 60.006 57.895 4.07 0.00 43.60 4.69
695 696 1.284982 CGTTGGAGTTGCTCTCGGTG 61.285 60.000 4.07 0.00 43.60 4.94
696 697 0.951040 GTTGGAGTTGCTCTCGGTGG 60.951 60.000 4.07 0.00 43.60 4.61
697 698 1.407656 TTGGAGTTGCTCTCGGTGGT 61.408 55.000 4.07 0.00 43.60 4.16
698 699 0.541063 TGGAGTTGCTCTCGGTGGTA 60.541 55.000 4.07 0.00 43.60 3.25
705 706 2.636830 TGCTCTCGGTGGTAGTACTAC 58.363 52.381 22.53 22.53 35.40 2.73
739 741 0.951040 GCAGTCCCTTGACGTTGAGG 60.951 60.000 10.34 10.34 46.51 3.86
740 742 0.393077 CAGTCCCTTGACGTTGAGGT 59.607 55.000 14.69 0.00 46.51 3.85
758 760 2.362397 AGGTATCATGGAGCAGTACGTG 59.638 50.000 0.00 0.00 0.00 4.49
790 798 6.773976 TGTTAATGTCATGGAAATTCCCTC 57.226 37.500 9.87 0.00 35.03 4.30
899 907 1.746991 GCAGCTTTCCTTCCCTCCG 60.747 63.158 0.00 0.00 0.00 4.63
913 921 2.091166 TCCCTCCGCCCTTTATAGTACA 60.091 50.000 0.00 0.00 0.00 2.90
915 923 2.036862 CCTCCGCCCTTTATAGTACACC 59.963 54.545 0.00 0.00 0.00 4.16
992 1020 1.335810 CTACCTACCTACGCATTCGCA 59.664 52.381 0.00 0.00 39.84 5.10
993 1021 0.750850 ACCTACCTACGCATTCGCAT 59.249 50.000 0.00 0.00 39.84 4.73
1251 1314 2.504244 GTCGCCGTCGAGGAAGTG 60.504 66.667 6.70 0.00 46.46 3.16
1257 1320 2.343758 GTCGAGGAAGTGCAGGCA 59.656 61.111 0.00 0.00 0.00 4.75
1497 1578 3.782443 GGCGGGGAGTACCACCTG 61.782 72.222 7.70 7.70 42.91 4.00
1944 2054 1.236616 CGCAGTTCATGGTGAAGGCA 61.237 55.000 13.33 0.00 37.00 4.75
2069 2225 3.196613 GGTGACCGCCGAGATATTC 57.803 57.895 0.00 0.00 0.00 1.75
2071 2227 0.387929 GTGACCGCCGAGATATTCCA 59.612 55.000 0.00 0.00 0.00 3.53
2072 2228 1.000955 GTGACCGCCGAGATATTCCAT 59.999 52.381 0.00 0.00 0.00 3.41
2094 2250 9.778741 TCCATCCAAATTGTTATTACTAGCTAG 57.221 33.333 19.44 19.44 0.00 3.42
2095 2251 8.507249 CCATCCAAATTGTTATTACTAGCTAGC 58.493 37.037 20.91 6.62 0.00 3.42
2106 2268 9.291664 GTTATTACTAGCTAGCTGTATGTATGC 57.708 37.037 27.68 6.89 0.00 3.14
2115 2277 5.798125 AGCTGTATGTATGCATGTACTCT 57.202 39.130 10.16 8.33 36.58 3.24
2158 2327 0.859232 CCTCCGTCGAACACACAAAG 59.141 55.000 0.00 0.00 0.00 2.77
2168 2337 3.000773 CGAACACACAAAGCAAAAGAAGC 60.001 43.478 0.00 0.00 0.00 3.86
2170 2339 1.854126 CACACAAAGCAAAAGAAGCCG 59.146 47.619 0.00 0.00 0.00 5.52
2173 2342 0.249405 CAAAGCAAAAGAAGCCGCCA 60.249 50.000 0.00 0.00 0.00 5.69
2193 2362 2.410466 TTTTTATCCATCCGCCCGC 58.590 52.632 0.00 0.00 0.00 6.13
2194 2363 1.104577 TTTTTATCCATCCGCCCGCC 61.105 55.000 0.00 0.00 0.00 6.13
2195 2364 2.969300 TTTTATCCATCCGCCCGCCC 62.969 60.000 0.00 0.00 0.00 6.13
2262 2435 7.601073 TCATATCATATGGCGATTTGACTTC 57.399 36.000 4.76 0.00 29.44 3.01
2269 2442 1.330829 GGCGATTTGACTTCGGAATCC 59.669 52.381 0.00 0.00 37.10 3.01
2271 2444 2.418628 GCGATTTGACTTCGGAATCCAA 59.581 45.455 0.00 0.00 37.10 3.53
2288 2461 5.593679 ATCCAAGAGCCAATCAAATCAAG 57.406 39.130 0.00 0.00 0.00 3.02
2294 2467 4.154918 AGAGCCAATCAAATCAAGAACGAC 59.845 41.667 0.00 0.00 0.00 4.34
2297 2470 4.726416 CCAATCAAATCAAGAACGACCTG 58.274 43.478 0.00 0.00 0.00 4.00
2300 2473 4.600692 TCAAATCAAGAACGACCTGAGA 57.399 40.909 0.00 0.00 0.00 3.27
2301 2474 4.307432 TCAAATCAAGAACGACCTGAGAC 58.693 43.478 0.00 0.00 0.00 3.36
2302 2475 4.058124 CAAATCAAGAACGACCTGAGACA 58.942 43.478 0.00 0.00 0.00 3.41
2307 2487 5.123227 TCAAGAACGACCTGAGACATTTTT 58.877 37.500 0.00 0.00 0.00 1.94
2309 2489 6.423905 TCAAGAACGACCTGAGACATTTTTAG 59.576 38.462 0.00 0.00 0.00 1.85
2351 2531 1.976404 AGATCACCATCGGCATCATCT 59.024 47.619 0.00 0.00 33.75 2.90
2361 2541 1.676746 GGCATCATCTGACATGTGCT 58.323 50.000 1.15 0.00 30.81 4.40
2367 2547 4.146745 TCATCTGACATGTGCTGCTAAT 57.853 40.909 1.15 0.00 0.00 1.73
2368 2548 4.520179 TCATCTGACATGTGCTGCTAATT 58.480 39.130 1.15 0.00 0.00 1.40
2369 2549 5.673514 TCATCTGACATGTGCTGCTAATTA 58.326 37.500 1.15 0.00 0.00 1.40
2370 2550 6.114767 TCATCTGACATGTGCTGCTAATTAA 58.885 36.000 1.15 0.00 0.00 1.40
2386 2566 2.208132 TTAAGCGGCTTCCAAATGGA 57.792 45.000 20.06 0.00 43.73 3.41
2415 2643 1.228459 GTTTGGCCGGGAAAGAGGT 60.228 57.895 2.18 0.00 0.00 3.85
2469 2699 4.208686 GACTGCCGGCCTACCTCG 62.209 72.222 26.77 5.80 0.00 4.63
2655 2925 2.584064 CATGCAGCTACCGGTGGA 59.416 61.111 23.78 3.92 43.10 4.02
2656 2926 3.647367 ATGCAGCTACCGGTGGAT 58.353 55.556 23.78 13.84 43.52 3.41
2657 2927 1.146930 ATGCAGCTACCGGTGGATG 59.853 57.895 29.48 29.48 45.97 3.51
2658 2928 2.203070 GCAGCTACCGGTGGATGG 60.203 66.667 33.09 17.56 39.02 3.51
2659 2929 2.731571 GCAGCTACCGGTGGATGGA 61.732 63.158 33.09 5.26 39.02 3.41
2660 2930 1.144057 CAGCTACCGGTGGATGGAC 59.856 63.158 26.71 6.36 35.06 4.02
2661 2931 2.106332 GCTACCGGTGGATGGACG 59.894 66.667 23.78 0.00 0.00 4.79
2666 2936 4.508128 CGGTGGATGGACGGACGG 62.508 72.222 0.00 0.00 0.00 4.79
2722 2992 1.406887 GGCAGGTCGGAGCATTTAAGA 60.407 52.381 10.15 0.00 0.00 2.10
2852 3159 3.961414 GAGTTTGGGCCCCACCGA 61.961 66.667 22.27 0.00 40.62 4.69
2857 3164 2.566111 TTTGGGCCCCACCGATCATC 62.566 60.000 22.27 0.00 40.62 2.92
2868 3175 2.591066 CCGATCATCGACGGTACTAC 57.409 55.000 9.16 0.00 43.74 2.73
2869 3176 2.141517 CCGATCATCGACGGTACTACT 58.858 52.381 9.16 0.00 43.74 2.57
2870 3177 3.320626 CCGATCATCGACGGTACTACTA 58.679 50.000 9.16 0.00 43.74 1.82
2873 3180 5.157067 CGATCATCGACGGTACTACTAGTA 58.843 45.833 0.00 1.89 43.74 1.82
2874 3181 5.060323 CGATCATCGACGGTACTACTAGTAC 59.940 48.000 15.54 15.54 45.04 2.73
2875 3182 7.059256 CGATCATCGACGGTACTACTAGTACT 61.059 46.154 20.86 0.00 45.07 2.73
2876 3183 7.835554 CGATCATCGACGGTACTACTAGTACTA 60.836 44.444 20.86 1.89 45.07 1.82
2888 3195 9.920133 GTACTACTAGTACTAAATTTATGCCCC 57.080 37.037 16.30 0.00 45.70 5.80
2889 3196 8.794364 ACTACTAGTACTAAATTTATGCCCCT 57.206 34.615 3.76 0.00 0.00 4.79
2890 3197 9.887862 ACTACTAGTACTAAATTTATGCCCCTA 57.112 33.333 3.76 0.00 0.00 3.53
2899 3206 8.900802 ACTAAATTTATGCCCCTATAATCTCCA 58.099 33.333 0.00 0.00 0.00 3.86
2900 3207 9.753674 CTAAATTTATGCCCCTATAATCTCCAA 57.246 33.333 0.00 0.00 0.00 3.53
2901 3208 8.422577 AAATTTATGCCCCTATAATCTCCAAC 57.577 34.615 0.00 0.00 0.00 3.77
2902 3209 5.514500 TTATGCCCCTATAATCTCCAACC 57.486 43.478 0.00 0.00 0.00 3.77
2903 3210 1.697432 TGCCCCTATAATCTCCAACCG 59.303 52.381 0.00 0.00 0.00 4.44
2904 3211 1.003233 GCCCCTATAATCTCCAACCGG 59.997 57.143 0.00 0.00 0.00 5.28
2905 3212 2.616524 CCCCTATAATCTCCAACCGGA 58.383 52.381 9.46 0.00 39.79 5.14
2906 3213 2.302157 CCCCTATAATCTCCAACCGGAC 59.698 54.545 9.46 0.00 35.91 4.79
2907 3214 2.302157 CCCTATAATCTCCAACCGGACC 59.698 54.545 9.46 0.00 35.91 4.46
2908 3215 2.302157 CCTATAATCTCCAACCGGACCC 59.698 54.545 9.46 0.00 35.91 4.46
2909 3216 2.191981 ATAATCTCCAACCGGACCCT 57.808 50.000 9.46 0.00 35.91 4.34
2910 3217 2.852714 TAATCTCCAACCGGACCCTA 57.147 50.000 9.46 0.00 35.91 3.53
2911 3218 2.191981 AATCTCCAACCGGACCCTAT 57.808 50.000 9.46 0.00 35.91 2.57
2912 3219 2.191981 ATCTCCAACCGGACCCTATT 57.808 50.000 9.46 0.00 35.91 1.73
2913 3220 1.492764 TCTCCAACCGGACCCTATTC 58.507 55.000 9.46 0.00 35.91 1.75
2914 3221 1.007963 TCTCCAACCGGACCCTATTCT 59.992 52.381 9.46 0.00 35.91 2.40
2915 3222 1.413077 CTCCAACCGGACCCTATTCTC 59.587 57.143 9.46 0.00 35.91 2.87
2916 3223 1.007963 TCCAACCGGACCCTATTCTCT 59.992 52.381 9.46 0.00 35.91 3.10
2917 3224 1.413077 CCAACCGGACCCTATTCTCTC 59.587 57.143 9.46 0.00 0.00 3.20
2918 3225 1.413077 CAACCGGACCCTATTCTCTCC 59.587 57.143 9.46 0.00 0.00 3.71
2919 3226 0.105607 ACCGGACCCTATTCTCTCCC 60.106 60.000 9.46 0.00 0.00 4.30
2920 3227 0.105658 CCGGACCCTATTCTCTCCCA 60.106 60.000 0.00 0.00 0.00 4.37
2929 3236 2.717639 ATTCTCTCCCATTTGTCCGG 57.282 50.000 0.00 0.00 0.00 5.14
2951 3258 2.048127 GCAACTCGGACGCCTCTT 60.048 61.111 0.00 0.00 0.00 2.85
2961 3313 0.601841 GACGCCTCTTCGACCCAAAA 60.602 55.000 0.00 0.00 0.00 2.44
2963 3315 0.237498 CGCCTCTTCGACCCAAAAAC 59.763 55.000 0.00 0.00 0.00 2.43
2964 3316 0.596577 GCCTCTTCGACCCAAAAACC 59.403 55.000 0.00 0.00 0.00 3.27
2965 3317 0.872388 CCTCTTCGACCCAAAAACCG 59.128 55.000 0.00 0.00 0.00 4.44
2966 3318 0.237498 CTCTTCGACCCAAAAACCGC 59.763 55.000 0.00 0.00 0.00 5.68
2967 3319 0.464013 TCTTCGACCCAAAAACCGCA 60.464 50.000 0.00 0.00 0.00 5.69
2970 3322 1.299544 CGACCCAAAAACCGCAACC 60.300 57.895 0.00 0.00 0.00 3.77
2973 3325 1.110518 ACCCAAAAACCGCAACCGAT 61.111 50.000 0.00 0.00 36.29 4.18
2974 3326 0.388006 CCCAAAAACCGCAACCGATC 60.388 55.000 0.00 0.00 36.29 3.69
2975 3327 0.312416 CCAAAAACCGCAACCGATCA 59.688 50.000 0.00 0.00 36.29 2.92
2976 3328 1.269309 CCAAAAACCGCAACCGATCAA 60.269 47.619 0.00 0.00 36.29 2.57
2978 3330 2.128367 AAAACCGCAACCGATCAAAC 57.872 45.000 0.00 0.00 36.29 2.93
2979 3331 1.314730 AAACCGCAACCGATCAAACT 58.685 45.000 0.00 0.00 36.29 2.66
2980 3332 0.872388 AACCGCAACCGATCAAACTC 59.128 50.000 0.00 0.00 36.29 3.01
2983 3335 1.128692 CCGCAACCGATCAAACTCTTC 59.871 52.381 0.00 0.00 36.29 2.87
2984 3336 1.798223 CGCAACCGATCAAACTCTTCA 59.202 47.619 0.00 0.00 36.29 3.02
2985 3337 2.416547 CGCAACCGATCAAACTCTTCAT 59.583 45.455 0.00 0.00 36.29 2.57
2986 3338 3.616821 CGCAACCGATCAAACTCTTCATA 59.383 43.478 0.00 0.00 36.29 2.15
2987 3339 4.492570 CGCAACCGATCAAACTCTTCATAC 60.493 45.833 0.00 0.00 36.29 2.39
2988 3340 4.201822 GCAACCGATCAAACTCTTCATACC 60.202 45.833 0.00 0.00 0.00 2.73
2990 3342 3.123804 CCGATCAAACTCTTCATACCGG 58.876 50.000 0.00 0.00 0.00 5.28
2992 3344 3.797256 CGATCAAACTCTTCATACCGGTC 59.203 47.826 12.40 0.00 0.00 4.79
2994 3346 4.610605 TCAAACTCTTCATACCGGTCAA 57.389 40.909 12.40 1.18 0.00 3.18
2995 3347 4.963373 TCAAACTCTTCATACCGGTCAAA 58.037 39.130 12.40 2.82 0.00 2.69
2996 3348 5.369833 TCAAACTCTTCATACCGGTCAAAA 58.630 37.500 12.40 2.40 0.00 2.44
2997 3349 6.001460 TCAAACTCTTCATACCGGTCAAAAT 58.999 36.000 12.40 0.00 0.00 1.82
2998 3350 5.880054 AACTCTTCATACCGGTCAAAATG 57.120 39.130 12.40 9.95 0.00 2.32
2999 3351 4.906618 ACTCTTCATACCGGTCAAAATGT 58.093 39.130 12.40 0.12 0.00 2.71
3000 3352 5.313712 ACTCTTCATACCGGTCAAAATGTT 58.686 37.500 12.40 0.00 0.00 2.71
3001 3353 5.181245 ACTCTTCATACCGGTCAAAATGTTG 59.819 40.000 12.40 7.01 35.95 3.33
3003 3355 3.085533 TCATACCGGTCAAAATGTTGGG 58.914 45.455 12.40 0.00 35.29 4.12
3004 3356 1.912417 TACCGGTCAAAATGTTGGGG 58.088 50.000 12.40 0.00 35.29 4.96
3005 3357 0.105913 ACCGGTCAAAATGTTGGGGT 60.106 50.000 0.00 0.00 35.29 4.95
3006 3358 1.044611 CCGGTCAAAATGTTGGGGTT 58.955 50.000 0.00 0.00 35.29 4.11
3007 3359 1.270041 CCGGTCAAAATGTTGGGGTTG 60.270 52.381 0.00 0.00 35.29 3.77
3008 3360 1.410882 CGGTCAAAATGTTGGGGTTGT 59.589 47.619 0.00 0.00 35.29 3.32
3009 3361 2.159028 CGGTCAAAATGTTGGGGTTGTT 60.159 45.455 0.00 0.00 35.29 2.83
3010 3362 3.462982 GGTCAAAATGTTGGGGTTGTTC 58.537 45.455 0.00 0.00 35.29 3.18
3011 3363 3.120041 GTCAAAATGTTGGGGTTGTTCG 58.880 45.455 0.00 0.00 35.29 3.95
3012 3364 2.101582 TCAAAATGTTGGGGTTGTTCGG 59.898 45.455 0.00 0.00 35.29 4.30
3013 3365 0.391228 AAATGTTGGGGTTGTTCGGC 59.609 50.000 0.00 0.00 0.00 5.54
3014 3366 0.757188 AATGTTGGGGTTGTTCGGCA 60.757 50.000 0.00 0.00 0.00 5.69
3015 3367 1.460273 ATGTTGGGGTTGTTCGGCAC 61.460 55.000 0.00 0.00 0.00 5.01
3028 3380 2.639286 GGCACGCCTCAAACACAG 59.361 61.111 0.00 0.00 0.00 3.66
3029 3381 2.050985 GCACGCCTCAAACACAGC 60.051 61.111 0.00 0.00 0.00 4.40
3030 3382 2.639286 CACGCCTCAAACACAGCC 59.361 61.111 0.00 0.00 0.00 4.85
3031 3383 2.594592 ACGCCTCAAACACAGCCC 60.595 61.111 0.00 0.00 0.00 5.19
3032 3384 2.594303 CGCCTCAAACACAGCCCA 60.594 61.111 0.00 0.00 0.00 5.36
3033 3385 1.973281 CGCCTCAAACACAGCCCAT 60.973 57.895 0.00 0.00 0.00 4.00
3034 3386 0.676466 CGCCTCAAACACAGCCCATA 60.676 55.000 0.00 0.00 0.00 2.74
3035 3387 1.767759 GCCTCAAACACAGCCCATAT 58.232 50.000 0.00 0.00 0.00 1.78
3036 3388 2.744823 CGCCTCAAACACAGCCCATATA 60.745 50.000 0.00 0.00 0.00 0.86
3037 3389 3.490348 GCCTCAAACACAGCCCATATAT 58.510 45.455 0.00 0.00 0.00 0.86
3038 3390 3.503748 GCCTCAAACACAGCCCATATATC 59.496 47.826 0.00 0.00 0.00 1.63
3039 3391 4.747931 GCCTCAAACACAGCCCATATATCT 60.748 45.833 0.00 0.00 0.00 1.98
3040 3392 4.758674 CCTCAAACACAGCCCATATATCTG 59.241 45.833 0.00 0.00 0.00 2.90
3041 3393 4.717877 TCAAACACAGCCCATATATCTGG 58.282 43.478 0.03 0.03 35.95 3.86
3042 3394 2.867109 ACACAGCCCATATATCTGGC 57.133 50.000 12.91 12.91 45.70 4.85
3048 3400 2.283298 GCCCATATATCTGGCATCACG 58.717 52.381 15.06 0.00 44.70 4.35
3049 3401 2.093500 GCCCATATATCTGGCATCACGA 60.093 50.000 15.06 0.00 44.70 4.35
3050 3402 3.525537 CCCATATATCTGGCATCACGAC 58.474 50.000 1.52 0.00 34.77 4.34
3051 3403 3.182182 CCATATATCTGGCATCACGACG 58.818 50.000 0.00 0.00 0.00 5.12
3052 3404 3.119495 CCATATATCTGGCATCACGACGA 60.119 47.826 0.00 0.00 0.00 4.20
3053 3405 4.440663 CCATATATCTGGCATCACGACGAT 60.441 45.833 0.00 0.00 33.27 3.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 86 1.431036 GTGTCGCCCCGTACTAGAC 59.569 63.158 0.00 0.00 0.00 2.59
86 87 1.750399 GGTGTCGCCCCGTACTAGA 60.750 63.158 0.00 0.00 0.00 2.43
87 88 2.803479 GGTGTCGCCCCGTACTAG 59.197 66.667 0.00 0.00 0.00 2.57
88 89 3.133464 CGGTGTCGCCCCGTACTA 61.133 66.667 0.00 0.00 40.59 1.82
97 98 4.373116 TTCCTGCTCCGGTGTCGC 62.373 66.667 0.00 0.75 34.56 5.19
98 99 2.125912 CTTCCTGCTCCGGTGTCG 60.126 66.667 0.00 0.00 0.00 4.35
99 100 2.435059 GCTTCCTGCTCCGGTGTC 60.435 66.667 0.00 0.00 38.95 3.67
100 101 4.021925 GGCTTCCTGCTCCGGTGT 62.022 66.667 0.00 0.00 42.39 4.16
109 110 4.785453 GAGGTGGGCGGCTTCCTG 62.785 72.222 24.05 0.00 0.00 3.86
112 113 4.388499 TTCGAGGTGGGCGGCTTC 62.388 66.667 9.56 1.91 0.00 3.86
113 114 4.699522 GTTCGAGGTGGGCGGCTT 62.700 66.667 9.56 0.00 0.00 4.35
115 116 4.778143 ATGTTCGAGGTGGGCGGC 62.778 66.667 0.00 0.00 0.00 6.53
116 117 2.046314 AATGTTCGAGGTGGGCGG 60.046 61.111 0.00 0.00 0.00 6.13
117 118 2.398554 CCAATGTTCGAGGTGGGCG 61.399 63.158 0.00 0.00 0.00 6.13
118 119 0.608035 TTCCAATGTTCGAGGTGGGC 60.608 55.000 6.07 0.00 0.00 5.36
119 120 1.453155 CTTCCAATGTTCGAGGTGGG 58.547 55.000 6.07 0.00 0.00 4.61
120 121 1.453155 CCTTCCAATGTTCGAGGTGG 58.547 55.000 0.00 0.00 0.00 4.61
121 122 0.804989 GCCTTCCAATGTTCGAGGTG 59.195 55.000 0.00 0.00 0.00 4.00
122 123 0.673644 CGCCTTCCAATGTTCGAGGT 60.674 55.000 0.00 0.00 0.00 3.85
123 124 1.982073 GCGCCTTCCAATGTTCGAGG 61.982 60.000 0.00 0.00 0.00 4.63
124 125 1.298157 TGCGCCTTCCAATGTTCGAG 61.298 55.000 4.18 0.00 0.00 4.04
125 126 1.302112 TGCGCCTTCCAATGTTCGA 60.302 52.632 4.18 0.00 0.00 3.71
126 127 1.154225 GTGCGCCTTCCAATGTTCG 60.154 57.895 4.18 0.00 0.00 3.95
127 128 1.212751 GGTGCGCCTTCCAATGTTC 59.787 57.895 9.68 0.00 0.00 3.18
128 129 2.625823 CGGTGCGCCTTCCAATGTT 61.626 57.895 15.69 0.00 0.00 2.71
129 130 3.055719 CGGTGCGCCTTCCAATGT 61.056 61.111 15.69 0.00 0.00 2.71
130 131 3.814268 CCGGTGCGCCTTCCAATG 61.814 66.667 15.69 0.00 0.00 2.82
165 166 4.933064 GATCTCCCGCTCGCCACG 62.933 72.222 0.00 0.00 0.00 4.94
166 167 4.933064 CGATCTCCCGCTCGCCAC 62.933 72.222 0.00 0.00 0.00 5.01
168 169 4.335584 CTCGATCTCCCGCTCGCC 62.336 72.222 0.00 0.00 34.94 5.54
169 170 4.992294 GCTCGATCTCCCGCTCGC 62.992 72.222 0.00 0.00 34.94 5.03
170 171 3.283684 AGCTCGATCTCCCGCTCG 61.284 66.667 0.00 0.00 36.25 5.03
171 172 2.334653 CAGCTCGATCTCCCGCTC 59.665 66.667 0.00 0.00 0.00 5.03
172 173 3.222855 CCAGCTCGATCTCCCGCT 61.223 66.667 0.00 0.00 0.00 5.52
173 174 3.206211 CTCCAGCTCGATCTCCCGC 62.206 68.421 0.00 0.00 0.00 6.13
174 175 3.038280 CTCCAGCTCGATCTCCCG 58.962 66.667 0.00 0.00 0.00 5.14
175 176 2.733945 GCTCCAGCTCGATCTCCC 59.266 66.667 0.00 0.00 38.21 4.30
176 177 2.334653 CGCTCCAGCTCGATCTCC 59.665 66.667 0.00 0.00 39.32 3.71
177 178 2.354539 GCGCTCCAGCTCGATCTC 60.355 66.667 0.00 0.00 39.32 2.75
178 179 3.910490 GGCGCTCCAGCTCGATCT 61.910 66.667 7.64 0.00 39.32 2.75
211 212 3.496875 CTCTCCATGCGCTCCTCCG 62.497 68.421 9.73 0.00 0.00 4.63
212 213 2.420890 CTCTCCATGCGCTCCTCC 59.579 66.667 9.73 0.00 0.00 4.30
213 214 2.420890 CCTCTCCATGCGCTCCTC 59.579 66.667 9.73 0.00 0.00 3.71
214 215 3.160047 CCCTCTCCATGCGCTCCT 61.160 66.667 9.73 0.00 0.00 3.69
215 216 3.157252 TCCCTCTCCATGCGCTCC 61.157 66.667 9.73 0.00 0.00 4.70
216 217 2.420890 CTCCCTCTCCATGCGCTC 59.579 66.667 9.73 0.00 0.00 5.03
217 218 3.160047 CCTCCCTCTCCATGCGCT 61.160 66.667 9.73 0.00 0.00 5.92
218 219 3.474570 ACCTCCCTCTCCATGCGC 61.475 66.667 0.00 0.00 0.00 6.09
219 220 2.503061 CACCTCCCTCTCCATGCG 59.497 66.667 0.00 0.00 0.00 4.73
220 221 1.690633 TCCACCTCCCTCTCCATGC 60.691 63.158 0.00 0.00 0.00 4.06
221 222 1.053264 CCTCCACCTCCCTCTCCATG 61.053 65.000 0.00 0.00 0.00 3.66
222 223 1.231751 TCCTCCACCTCCCTCTCCAT 61.232 60.000 0.00 0.00 0.00 3.41
223 224 1.862138 TCCTCCACCTCCCTCTCCA 60.862 63.158 0.00 0.00 0.00 3.86
224 225 1.075600 CTCCTCCACCTCCCTCTCC 60.076 68.421 0.00 0.00 0.00 3.71
225 226 1.760480 GCTCCTCCACCTCCCTCTC 60.760 68.421 0.00 0.00 0.00 3.20
226 227 2.366570 GCTCCTCCACCTCCCTCT 59.633 66.667 0.00 0.00 0.00 3.69
227 228 3.151022 CGCTCCTCCACCTCCCTC 61.151 72.222 0.00 0.00 0.00 4.30
228 229 3.999285 ACGCTCCTCCACCTCCCT 61.999 66.667 0.00 0.00 0.00 4.20
229 230 3.775654 CACGCTCCTCCACCTCCC 61.776 72.222 0.00 0.00 0.00 4.30
230 231 4.459089 GCACGCTCCTCCACCTCC 62.459 72.222 0.00 0.00 0.00 4.30
231 232 4.459089 GGCACGCTCCTCCACCTC 62.459 72.222 0.00 0.00 0.00 3.85
237 238 3.701604 CTACACGGGCACGCTCCTC 62.702 68.421 9.12 0.00 46.04 3.71
238 239 3.760035 CTACACGGGCACGCTCCT 61.760 66.667 9.12 0.00 46.04 3.69
249 250 3.481903 CTGCACTGCCGCTACACG 61.482 66.667 0.00 0.00 43.15 4.49
250 251 3.793144 GCTGCACTGCCGCTACAC 61.793 66.667 9.96 0.00 35.94 2.90
294 295 4.803426 CTCCGCCGTCTGTCCAGC 62.803 72.222 0.00 0.00 0.00 4.85
295 296 4.135153 CCTCCGCCGTCTGTCCAG 62.135 72.222 0.00 0.00 0.00 3.86
315 316 4.783621 TCTCCCATGCAGCACCGC 62.784 66.667 0.00 0.00 0.00 5.68
316 317 2.513204 CTCTCCCATGCAGCACCG 60.513 66.667 0.00 0.00 0.00 4.94
317 318 2.827642 GCTCTCCCATGCAGCACC 60.828 66.667 0.00 0.00 33.06 5.01
318 319 3.200593 CGCTCTCCCATGCAGCAC 61.201 66.667 0.00 0.00 32.27 4.40
320 321 4.853050 AGCGCTCTCCCATGCAGC 62.853 66.667 2.64 0.00 0.00 5.25
321 322 1.712977 GAAAGCGCTCTCCCATGCAG 61.713 60.000 12.06 0.00 0.00 4.41
322 323 1.746615 GAAAGCGCTCTCCCATGCA 60.747 57.895 12.06 0.00 0.00 3.96
323 324 2.476320 GGAAAGCGCTCTCCCATGC 61.476 63.158 19.58 0.00 0.00 4.06
324 325 3.819188 GGAAAGCGCTCTCCCATG 58.181 61.111 19.58 0.00 0.00 3.66
328 329 2.124942 CAGGGGAAAGCGCTCTCC 60.125 66.667 22.04 22.04 36.03 3.71
329 330 2.124942 CCAGGGGAAAGCGCTCTC 60.125 66.667 12.06 6.17 0.00 3.20
330 331 3.721706 CCCAGGGGAAAGCGCTCT 61.722 66.667 12.06 0.00 37.50 4.09
358 359 4.814294 AGGTCGATGAACGCCGGC 62.814 66.667 19.07 19.07 40.86 6.13
359 360 2.582498 GAGGTCGATGAACGCCGG 60.582 66.667 0.00 0.00 40.86 6.13
360 361 2.158959 GTGAGGTCGATGAACGCCG 61.159 63.158 0.00 0.00 40.86 6.46
361 362 1.810030 GGTGAGGTCGATGAACGCC 60.810 63.158 0.00 0.00 42.26 5.68
362 363 2.158959 CGGTGAGGTCGATGAACGC 61.159 63.158 0.00 0.00 42.26 4.84
363 364 1.516386 CCGGTGAGGTCGATGAACG 60.516 63.158 0.00 0.00 44.09 3.95
364 365 1.810030 GCCGGTGAGGTCGATGAAC 60.810 63.158 1.90 0.00 43.70 3.18
365 366 2.577059 GCCGGTGAGGTCGATGAA 59.423 61.111 1.90 0.00 43.70 2.57
366 367 3.458163 GGCCGGTGAGGTCGATGA 61.458 66.667 1.90 0.00 43.70 2.92
383 384 4.862823 GTCCTCCTCCTCCCCGGG 62.863 77.778 15.80 15.80 0.00 5.73
385 386 4.124943 TCGTCCTCCTCCTCCCCG 62.125 72.222 0.00 0.00 0.00 5.73
386 387 2.442458 GTCGTCCTCCTCCTCCCC 60.442 72.222 0.00 0.00 0.00 4.81
387 388 2.829458 CGTCGTCCTCCTCCTCCC 60.829 72.222 0.00 0.00 0.00 4.30
388 389 2.114051 GTCGTCGTCCTCCTCCTCC 61.114 68.421 0.00 0.00 0.00 4.30
389 390 2.462782 CGTCGTCGTCCTCCTCCTC 61.463 68.421 0.00 0.00 0.00 3.71
390 391 2.436292 CGTCGTCGTCCTCCTCCT 60.436 66.667 0.00 0.00 0.00 3.69
391 392 4.176851 GCGTCGTCGTCCTCCTCC 62.177 72.222 3.66 0.00 39.49 4.30
392 393 4.176851 GGCGTCGTCGTCCTCCTC 62.177 72.222 3.66 0.00 39.49 3.71
393 394 3.320879 TAGGCGTCGTCGTCCTCCT 62.321 63.158 17.55 11.36 43.20 3.69
394 395 2.821366 TAGGCGTCGTCGTCCTCC 60.821 66.667 17.55 5.10 43.20 4.30
395 396 2.708255 CTAGGCGTCGTCGTCCTC 59.292 66.667 17.55 1.38 43.20 3.71
396 397 2.823147 CCTAGGCGTCGTCGTCCT 60.823 66.667 17.95 17.95 43.20 3.85
397 398 3.885521 CCCTAGGCGTCGTCGTCC 61.886 72.222 2.05 5.30 43.20 4.79
398 399 4.549516 GCCCTAGGCGTCGTCGTC 62.550 72.222 2.05 0.00 39.62 4.20
408 409 3.774528 TCAGCACGCTGCCCTAGG 61.775 66.667 14.25 0.06 46.52 3.02
409 410 2.510238 GTCAGCACGCTGCCCTAG 60.510 66.667 14.25 0.00 46.52 3.02
410 411 3.300934 CTGTCAGCACGCTGCCCTA 62.301 63.158 14.25 0.00 46.52 3.53
411 412 4.694233 CTGTCAGCACGCTGCCCT 62.694 66.667 14.25 0.00 46.52 5.19
414 415 2.029288 TAAGCTGTCAGCACGCTGC 61.029 57.895 26.23 9.85 45.56 5.25
415 416 0.668706 AGTAAGCTGTCAGCACGCTG 60.669 55.000 26.23 12.91 45.56 5.18
416 417 0.034059 AAGTAAGCTGTCAGCACGCT 59.966 50.000 26.23 16.48 45.56 5.07
417 418 0.868406 AAAGTAAGCTGTCAGCACGC 59.132 50.000 26.23 14.60 45.56 5.34
418 419 3.609103 AAAAAGTAAGCTGTCAGCACG 57.391 42.857 26.23 0.00 45.56 5.34
442 443 9.699703 GGCAAAGTCCACTTAAACATTAATAAA 57.300 29.630 0.00 0.00 34.61 1.40
443 444 8.308207 GGGCAAAGTCCACTTAAACATTAATAA 58.692 33.333 0.00 0.00 34.61 1.40
444 445 7.362229 CGGGCAAAGTCCACTTAAACATTAATA 60.362 37.037 0.00 0.00 34.61 0.98
445 446 6.571537 CGGGCAAAGTCCACTTAAACATTAAT 60.572 38.462 0.00 0.00 34.61 1.40
446 447 5.278561 CGGGCAAAGTCCACTTAAACATTAA 60.279 40.000 0.00 0.00 34.61 1.40
447 448 4.216687 CGGGCAAAGTCCACTTAAACATTA 59.783 41.667 0.00 0.00 34.61 1.90
448 449 3.005367 CGGGCAAAGTCCACTTAAACATT 59.995 43.478 0.00 0.00 34.61 2.71
449 450 2.556622 CGGGCAAAGTCCACTTAAACAT 59.443 45.455 0.00 0.00 34.61 2.71
450 451 1.950909 CGGGCAAAGTCCACTTAAACA 59.049 47.619 0.00 0.00 34.61 2.83
451 452 1.268625 CCGGGCAAAGTCCACTTAAAC 59.731 52.381 0.00 0.00 34.61 2.01
452 453 1.611519 CCGGGCAAAGTCCACTTAAA 58.388 50.000 0.00 0.00 34.61 1.52
453 454 0.891904 GCCGGGCAAAGTCCACTTAA 60.892 55.000 15.62 0.00 34.61 1.85
454 455 1.302993 GCCGGGCAAAGTCCACTTA 60.303 57.895 15.62 0.00 34.61 2.24
455 456 2.597510 GCCGGGCAAAGTCCACTT 60.598 61.111 15.62 0.00 37.91 3.16
456 457 3.850098 CTGCCGGGCAAAGTCCACT 62.850 63.158 23.94 0.00 38.41 4.00
457 458 3.365265 CTGCCGGGCAAAGTCCAC 61.365 66.667 23.94 0.00 38.41 4.02
458 459 4.659172 CCTGCCGGGCAAAGTCCA 62.659 66.667 23.94 0.00 38.41 4.02
459 460 4.660938 ACCTGCCGGGCAAAGTCC 62.661 66.667 23.94 0.00 38.41 3.85
460 461 2.597510 AACCTGCCGGGCAAAGTC 60.598 61.111 23.94 0.00 38.41 3.01
461 462 2.912025 CAACCTGCCGGGCAAAGT 60.912 61.111 23.94 19.72 38.41 2.66
462 463 2.597217 TCAACCTGCCGGGCAAAG 60.597 61.111 23.94 19.04 38.41 2.77
463 464 2.909965 GTCAACCTGCCGGGCAAA 60.910 61.111 23.94 0.15 38.41 3.68
464 465 4.966787 GGTCAACCTGCCGGGCAA 62.967 66.667 23.94 4.46 38.41 4.52
471 472 0.963355 TAAATGGCCGGTCAACCTGC 60.963 55.000 15.45 7.01 44.27 4.85
472 473 1.405105 CATAAATGGCCGGTCAACCTG 59.595 52.381 15.45 4.72 0.00 4.00
473 474 1.005450 ACATAAATGGCCGGTCAACCT 59.995 47.619 15.45 2.41 0.00 3.50
474 475 1.470051 ACATAAATGGCCGGTCAACC 58.530 50.000 15.45 0.00 0.00 3.77
475 476 3.586100 AAACATAAATGGCCGGTCAAC 57.414 42.857 15.45 0.00 0.00 3.18
476 477 5.923733 ATTAAACATAAATGGCCGGTCAA 57.076 34.783 15.45 0.00 0.00 3.18
477 478 5.923733 AATTAAACATAAATGGCCGGTCA 57.076 34.783 13.22 13.22 0.00 4.02
478 479 6.364976 GCATAATTAAACATAAATGGCCGGTC 59.635 38.462 0.00 0.00 0.00 4.79
479 480 6.041523 AGCATAATTAAACATAAATGGCCGGT 59.958 34.615 1.90 0.00 0.00 5.28
480 481 6.454795 AGCATAATTAAACATAAATGGCCGG 58.545 36.000 0.00 0.00 0.00 6.13
481 482 7.945033 AAGCATAATTAAACATAAATGGCCG 57.055 32.000 0.00 0.00 0.00 6.13
490 491 9.040939 GGGCGAAAAATAAGCATAATTAAACAT 57.959 29.630 0.00 0.00 0.00 2.71
491 492 7.221067 CGGGCGAAAAATAAGCATAATTAAACA 59.779 33.333 0.00 0.00 0.00 2.83
492 493 7.552187 CGGGCGAAAAATAAGCATAATTAAAC 58.448 34.615 0.00 0.00 0.00 2.01
493 494 6.199342 GCGGGCGAAAAATAAGCATAATTAAA 59.801 34.615 0.00 0.00 0.00 1.52
494 495 5.688176 GCGGGCGAAAAATAAGCATAATTAA 59.312 36.000 0.00 0.00 0.00 1.40
495 496 5.216648 GCGGGCGAAAAATAAGCATAATTA 58.783 37.500 0.00 0.00 0.00 1.40
496 497 4.048504 GCGGGCGAAAAATAAGCATAATT 58.951 39.130 0.00 0.00 0.00 1.40
497 498 3.638484 GCGGGCGAAAAATAAGCATAAT 58.362 40.909 0.00 0.00 0.00 1.28
498 499 2.539953 CGCGGGCGAAAAATAAGCATAA 60.540 45.455 7.38 0.00 42.83 1.90
499 500 1.003331 CGCGGGCGAAAAATAAGCATA 60.003 47.619 7.38 0.00 42.83 3.14
500 501 0.248458 CGCGGGCGAAAAATAAGCAT 60.248 50.000 7.38 0.00 42.83 3.79
501 502 1.135731 CGCGGGCGAAAAATAAGCA 59.864 52.632 7.38 0.00 42.83 3.91
502 503 1.131618 CACGCGGGCGAAAAATAAGC 61.132 55.000 20.98 0.00 42.83 3.09
503 504 0.167251 ACACGCGGGCGAAAAATAAG 59.833 50.000 20.98 1.79 42.83 1.73
504 505 0.110147 CACACGCGGGCGAAAAATAA 60.110 50.000 20.98 0.00 42.83 1.40
505 506 1.229315 ACACACGCGGGCGAAAAATA 61.229 50.000 20.98 0.00 42.83 1.40
506 507 1.229315 TACACACGCGGGCGAAAAAT 61.229 50.000 20.98 3.70 42.83 1.82
507 508 1.886313 TACACACGCGGGCGAAAAA 60.886 52.632 20.98 0.00 42.83 1.94
508 509 2.279985 TACACACGCGGGCGAAAA 60.280 55.556 20.98 0.00 42.83 2.29
509 510 3.037249 GTACACACGCGGGCGAAA 61.037 61.111 20.98 0.00 42.83 3.46
535 536 0.740164 TATGCGAGCGGCCGTAAAAA 60.740 50.000 28.70 10.83 42.61 1.94
536 537 0.740164 TTATGCGAGCGGCCGTAAAA 60.740 50.000 28.70 9.64 42.61 1.52
537 538 0.531090 ATTATGCGAGCGGCCGTAAA 60.531 50.000 28.70 8.85 42.61 2.01
538 539 0.531090 AATTATGCGAGCGGCCGTAA 60.531 50.000 28.70 16.33 42.61 3.18
539 540 1.068417 AATTATGCGAGCGGCCGTA 59.932 52.632 28.70 6.94 42.61 4.02
540 541 2.203015 AATTATGCGAGCGGCCGT 60.203 55.556 28.70 13.92 42.61 5.68
541 542 2.249309 CAATTATGCGAGCGGCCG 59.751 61.111 24.05 24.05 42.61 6.13
542 543 2.639286 CCAATTATGCGAGCGGCC 59.361 61.111 0.00 0.00 42.61 6.13
543 544 2.117941 GACCCAATTATGCGAGCGGC 62.118 60.000 0.00 0.00 43.96 6.53
544 545 0.532862 AGACCCAATTATGCGAGCGG 60.533 55.000 0.00 0.00 0.00 5.52
545 546 0.583438 CAGACCCAATTATGCGAGCG 59.417 55.000 0.00 0.00 0.00 5.03
546 547 0.308993 GCAGACCCAATTATGCGAGC 59.691 55.000 0.00 0.00 0.00 5.03
547 548 0.947244 GGCAGACCCAATTATGCGAG 59.053 55.000 0.00 0.00 39.58 5.03
548 549 0.254462 TGGCAGACCCAATTATGCGA 59.746 50.000 0.00 0.00 41.82 5.10
549 550 2.792500 TGGCAGACCCAATTATGCG 58.208 52.632 0.00 0.00 41.82 4.73
571 572 2.281900 TTGGTAGGTGCGCCCAAC 60.282 61.111 14.07 11.83 33.43 3.77
572 573 2.281900 GTTGGTAGGTGCGCCCAA 60.282 61.111 14.07 13.32 35.93 4.12
573 574 4.338710 GGTTGGTAGGTGCGCCCA 62.339 66.667 14.07 7.89 34.66 5.36
575 576 3.853698 TTGGGTTGGTAGGTGCGCC 62.854 63.158 8.71 8.71 0.00 6.53
576 577 1.248101 ATTTGGGTTGGTAGGTGCGC 61.248 55.000 0.00 0.00 0.00 6.09
577 578 0.525761 CATTTGGGTTGGTAGGTGCG 59.474 55.000 0.00 0.00 0.00 5.34
578 579 1.818674 CTCATTTGGGTTGGTAGGTGC 59.181 52.381 0.00 0.00 0.00 5.01
579 580 3.433306 TCTCATTTGGGTTGGTAGGTG 57.567 47.619 0.00 0.00 0.00 4.00
580 581 4.463050 TTTCTCATTTGGGTTGGTAGGT 57.537 40.909 0.00 0.00 0.00 3.08
581 582 4.320935 CGTTTTCTCATTTGGGTTGGTAGG 60.321 45.833 0.00 0.00 0.00 3.18
582 583 4.320935 CCGTTTTCTCATTTGGGTTGGTAG 60.321 45.833 0.00 0.00 0.00 3.18
583 584 3.570550 CCGTTTTCTCATTTGGGTTGGTA 59.429 43.478 0.00 0.00 0.00 3.25
584 585 2.364002 CCGTTTTCTCATTTGGGTTGGT 59.636 45.455 0.00 0.00 0.00 3.67
585 586 2.625790 TCCGTTTTCTCATTTGGGTTGG 59.374 45.455 0.00 0.00 0.00 3.77
586 587 3.067461 TGTCCGTTTTCTCATTTGGGTTG 59.933 43.478 0.00 0.00 0.00 3.77
587 588 3.067601 GTGTCCGTTTTCTCATTTGGGTT 59.932 43.478 0.00 0.00 0.00 4.11
588 589 2.621526 GTGTCCGTTTTCTCATTTGGGT 59.378 45.455 0.00 0.00 0.00 4.51
589 590 2.350388 CGTGTCCGTTTTCTCATTTGGG 60.350 50.000 0.00 0.00 0.00 4.12
590 591 2.546368 TCGTGTCCGTTTTCTCATTTGG 59.454 45.455 0.00 0.00 35.01 3.28
591 592 3.541711 GTCGTGTCCGTTTTCTCATTTG 58.458 45.455 0.00 0.00 35.01 2.32
592 593 2.546789 GGTCGTGTCCGTTTTCTCATTT 59.453 45.455 0.00 0.00 35.01 2.32
593 594 2.140717 GGTCGTGTCCGTTTTCTCATT 58.859 47.619 0.00 0.00 35.01 2.57
594 595 1.792006 GGTCGTGTCCGTTTTCTCAT 58.208 50.000 0.00 0.00 35.01 2.90
595 596 0.595567 CGGTCGTGTCCGTTTTCTCA 60.596 55.000 7.90 0.00 44.77 3.27
596 597 2.139210 CGGTCGTGTCCGTTTTCTC 58.861 57.895 7.90 0.00 44.77 2.87
597 598 4.331356 CGGTCGTGTCCGTTTTCT 57.669 55.556 7.90 0.00 44.77 2.52
605 606 3.103911 CAAGCGGACGGTCGTGTC 61.104 66.667 0.00 0.00 38.17 3.67
606 607 4.657824 CCAAGCGGACGGTCGTGT 62.658 66.667 0.00 0.00 0.00 4.49
622 623 2.879813 TTTATCTGTTCGGGCCGGCC 62.880 60.000 38.57 38.57 0.00 6.13
623 624 1.027792 TTTTATCTGTTCGGGCCGGC 61.028 55.000 27.98 21.18 0.00 6.13
624 625 1.400494 CTTTTTATCTGTTCGGGCCGG 59.600 52.381 27.98 10.15 0.00 6.13
625 626 1.202143 GCTTTTTATCTGTTCGGGCCG 60.202 52.381 22.51 22.51 0.00 6.13
626 627 1.816224 TGCTTTTTATCTGTTCGGGCC 59.184 47.619 0.00 0.00 0.00 5.80
627 628 3.569250 TTGCTTTTTATCTGTTCGGGC 57.431 42.857 0.00 0.00 0.00 6.13
628 629 4.865776 TGTTTGCTTTTTATCTGTTCGGG 58.134 39.130 0.00 0.00 0.00 5.14
629 630 6.562086 GCTTTGTTTGCTTTTTATCTGTTCGG 60.562 38.462 0.00 0.00 0.00 4.30
630 631 6.347110 GCTTTGTTTGCTTTTTATCTGTTCG 58.653 36.000 0.00 0.00 0.00 3.95
631 632 6.347110 CGCTTTGTTTGCTTTTTATCTGTTC 58.653 36.000 0.00 0.00 0.00 3.18
632 633 5.276820 GCGCTTTGTTTGCTTTTTATCTGTT 60.277 36.000 0.00 0.00 0.00 3.16
633 634 4.209080 GCGCTTTGTTTGCTTTTTATCTGT 59.791 37.500 0.00 0.00 0.00 3.41
634 635 4.661402 CGCGCTTTGTTTGCTTTTTATCTG 60.661 41.667 5.56 0.00 0.00 2.90
635 636 3.425193 CGCGCTTTGTTTGCTTTTTATCT 59.575 39.130 5.56 0.00 0.00 1.98
636 637 3.710362 CGCGCTTTGTTTGCTTTTTATC 58.290 40.909 5.56 0.00 0.00 1.75
637 638 2.096958 GCGCGCTTTGTTTGCTTTTTAT 60.097 40.909 26.67 0.00 0.00 1.40
638 639 1.256635 GCGCGCTTTGTTTGCTTTTTA 59.743 42.857 26.67 0.00 0.00 1.52
639 640 0.026156 GCGCGCTTTGTTTGCTTTTT 59.974 45.000 26.67 0.00 0.00 1.94
640 641 1.635810 GCGCGCTTTGTTTGCTTTT 59.364 47.368 26.67 0.00 0.00 2.27
641 642 2.576002 CGCGCGCTTTGTTTGCTTT 61.576 52.632 30.48 0.00 0.00 3.51
642 643 3.024043 CGCGCGCTTTGTTTGCTT 61.024 55.556 30.48 0.00 0.00 3.91
643 644 3.749735 AACGCGCGCTTTGTTTGCT 62.750 52.632 32.58 2.28 0.00 3.91
644 645 3.250100 GAACGCGCGCTTTGTTTGC 62.250 57.895 32.58 8.90 0.00 3.68
645 646 1.268113 ATGAACGCGCGCTTTGTTTG 61.268 50.000 32.58 13.11 0.00 2.93
646 647 0.593773 AATGAACGCGCGCTTTGTTT 60.594 45.000 32.58 16.08 0.00 2.83
647 648 0.593773 AAATGAACGCGCGCTTTGTT 60.594 45.000 32.58 23.90 0.00 2.83
648 649 1.008995 AAATGAACGCGCGCTTTGT 60.009 47.368 32.58 16.28 0.00 2.83
649 650 1.408077 CAAATGAACGCGCGCTTTG 59.592 52.632 32.58 25.00 0.00 2.77
650 651 1.729131 CCAAATGAACGCGCGCTTT 60.729 52.632 32.58 27.09 0.00 3.51
651 652 1.922135 ATCCAAATGAACGCGCGCTT 61.922 50.000 32.58 22.82 0.00 4.68
652 653 2.309764 GATCCAAATGAACGCGCGCT 62.310 55.000 32.58 20.41 0.00 5.92
653 654 1.934476 GATCCAAATGAACGCGCGC 60.934 57.895 32.58 23.91 0.00 6.86
654 655 1.648165 CGATCCAAATGAACGCGCG 60.648 57.895 30.96 30.96 32.33 6.86
655 656 1.297598 CCGATCCAAATGAACGCGC 60.298 57.895 5.73 0.00 37.88 6.86
656 657 1.297598 GCCGATCCAAATGAACGCG 60.298 57.895 3.53 3.53 37.88 6.01
657 658 1.297598 CGCCGATCCAAATGAACGC 60.298 57.895 0.00 0.00 37.88 4.84
658 659 1.297598 GCGCCGATCCAAATGAACG 60.298 57.895 0.00 0.00 38.83 3.95
659 660 1.297598 CGCGCCGATCCAAATGAAC 60.298 57.895 0.00 0.00 0.00 3.18
660 661 1.302383 AACGCGCCGATCCAAATGAA 61.302 50.000 5.73 0.00 0.00 2.57
661 662 1.743623 AACGCGCCGATCCAAATGA 60.744 52.632 5.73 0.00 0.00 2.57
662 663 1.583451 CAACGCGCCGATCCAAATG 60.583 57.895 5.73 0.00 0.00 2.32
663 664 2.760159 CCAACGCGCCGATCCAAAT 61.760 57.895 5.73 0.00 0.00 2.32
664 665 3.427425 CCAACGCGCCGATCCAAA 61.427 61.111 5.73 0.00 0.00 3.28
665 666 4.380781 TCCAACGCGCCGATCCAA 62.381 61.111 5.73 0.00 0.00 3.53
666 667 4.812476 CTCCAACGCGCCGATCCA 62.812 66.667 5.73 0.00 0.00 3.41
667 668 4.814294 ACTCCAACGCGCCGATCC 62.814 66.667 5.73 0.00 0.00 3.36
668 669 2.813908 AACTCCAACGCGCCGATC 60.814 61.111 5.73 0.00 0.00 3.69
669 670 3.118454 CAACTCCAACGCGCCGAT 61.118 61.111 5.73 0.00 0.00 4.18
672 673 4.090057 GAGCAACTCCAACGCGCC 62.090 66.667 5.73 0.00 0.00 6.53
673 674 3.016474 GAGAGCAACTCCAACGCGC 62.016 63.158 5.73 0.00 39.53 6.86
674 675 2.720758 CGAGAGCAACTCCAACGCG 61.721 63.158 3.53 3.53 42.18 6.01
675 676 2.383527 CCGAGAGCAACTCCAACGC 61.384 63.158 5.57 0.00 42.18 4.84
676 677 1.006102 ACCGAGAGCAACTCCAACG 60.006 57.895 5.57 0.00 42.18 4.10
677 678 0.951040 CCACCGAGAGCAACTCCAAC 60.951 60.000 5.57 0.00 42.18 3.77
678 679 1.371183 CCACCGAGAGCAACTCCAA 59.629 57.895 5.57 0.00 42.18 3.53
679 680 0.541063 TACCACCGAGAGCAACTCCA 60.541 55.000 5.57 0.00 42.18 3.86
680 681 0.173708 CTACCACCGAGAGCAACTCC 59.826 60.000 5.57 0.00 42.18 3.85
681 682 0.889306 ACTACCACCGAGAGCAACTC 59.111 55.000 1.59 1.59 41.79 3.01
682 683 1.817447 GTACTACCACCGAGAGCAACT 59.183 52.381 0.00 0.00 0.00 3.16
683 684 1.817447 AGTACTACCACCGAGAGCAAC 59.183 52.381 0.00 0.00 0.00 4.17
684 685 2.211250 AGTACTACCACCGAGAGCAA 57.789 50.000 0.00 0.00 0.00 3.91
685 686 2.636830 GTAGTACTACCACCGAGAGCA 58.363 52.381 20.47 0.00 0.00 4.26
696 697 4.341235 TGCAGATGTCATGGGTAGTACTAC 59.659 45.833 22.53 22.53 35.40 2.73
697 698 4.542697 TGCAGATGTCATGGGTAGTACTA 58.457 43.478 0.00 0.00 0.00 1.82
698 699 3.374764 TGCAGATGTCATGGGTAGTACT 58.625 45.455 0.00 0.00 0.00 2.73
705 706 0.393944 ACTGCTGCAGATGTCATGGG 60.394 55.000 34.28 6.65 35.18 4.00
739 741 2.128035 GCACGTACTGCTCCATGATAC 58.872 52.381 0.00 0.00 43.33 2.24
740 742 2.509052 GCACGTACTGCTCCATGATA 57.491 50.000 0.00 0.00 43.33 2.15
758 760 7.786178 TTCCATGACATTAACATAGTGTAGC 57.214 36.000 0.00 0.00 0.00 3.58
899 907 2.207590 GCGTGGTGTACTATAAAGGGC 58.792 52.381 0.00 0.00 0.00 5.19
913 921 0.747283 CCTAGGAGAGTACGCGTGGT 60.747 60.000 24.59 8.72 0.00 4.16
915 923 1.865970 CTACCTAGGAGAGTACGCGTG 59.134 57.143 24.59 2.76 0.00 5.34
1257 1320 2.759795 GGCTTTGTGGAGGCCTCT 59.240 61.111 31.36 0.00 42.31 3.69
1866 1976 1.002134 CCACATCACCTCCACCACC 60.002 63.158 0.00 0.00 0.00 4.61
2066 2222 9.646522 AGCTAGTAATAACAATTTGGATGGAAT 57.353 29.630 0.78 0.00 0.00 3.01
2069 2225 8.507249 GCTAGCTAGTAATAACAATTTGGATGG 58.493 37.037 21.62 0.00 0.00 3.51
2071 2227 9.277783 CAGCTAGCTAGTAATAACAATTTGGAT 57.722 33.333 18.86 0.00 0.00 3.41
2072 2228 8.265055 ACAGCTAGCTAGTAATAACAATTTGGA 58.735 33.333 18.86 0.00 0.00 3.53
2093 2249 5.302823 TCAGAGTACATGCATACATACAGCT 59.697 40.000 0.00 2.35 33.67 4.24
2094 2250 5.403766 GTCAGAGTACATGCATACATACAGC 59.596 44.000 0.00 0.16 33.67 4.40
2095 2251 5.923114 GGTCAGAGTACATGCATACATACAG 59.077 44.000 0.00 0.00 33.67 2.74
2158 2327 1.511850 AAAATGGCGGCTTCTTTTGC 58.488 45.000 11.43 0.00 0.00 3.68
2184 2353 4.122149 TCAATTGGGCGGGCGGAT 62.122 61.111 5.42 0.00 0.00 4.18
2189 2358 1.134946 GATCTTTGTCAATTGGGCGGG 59.865 52.381 5.42 0.00 0.00 6.13
2190 2359 1.134946 GGATCTTTGTCAATTGGGCGG 59.865 52.381 5.42 0.00 0.00 6.13
2191 2360 1.134946 GGGATCTTTGTCAATTGGGCG 59.865 52.381 5.42 0.00 0.00 6.13
2192 2361 1.134946 CGGGATCTTTGTCAATTGGGC 59.865 52.381 5.42 0.00 0.00 5.36
2193 2362 2.423538 GACGGGATCTTTGTCAATTGGG 59.576 50.000 5.42 0.00 32.91 4.12
2194 2363 2.423538 GGACGGGATCTTTGTCAATTGG 59.576 50.000 5.42 0.00 34.32 3.16
2195 2364 2.423538 GGGACGGGATCTTTGTCAATTG 59.576 50.000 0.00 0.00 34.32 2.32
2196 2365 2.308866 AGGGACGGGATCTTTGTCAATT 59.691 45.455 12.34 0.00 34.32 2.32
2197 2366 1.916181 AGGGACGGGATCTTTGTCAAT 59.084 47.619 12.34 1.13 34.32 2.57
2262 2435 2.042686 TGATTGGCTCTTGGATTCCG 57.957 50.000 0.00 0.00 0.00 4.30
2269 2442 4.855388 CGTTCTTGATTTGATTGGCTCTTG 59.145 41.667 0.00 0.00 0.00 3.02
2271 2444 4.154918 GTCGTTCTTGATTTGATTGGCTCT 59.845 41.667 0.00 0.00 0.00 4.09
2288 2461 6.541111 AACTAAAAATGTCTCAGGTCGTTC 57.459 37.500 0.00 0.00 0.00 3.95
2361 2541 7.401812 CCATTTGGAAGCCGCTTAATTAGCA 62.402 44.000 5.38 0.00 43.65 3.49
2367 2547 2.091541 CTCCATTTGGAAGCCGCTTAA 58.908 47.619 5.38 0.00 44.91 1.85
2368 2548 1.004277 ACTCCATTTGGAAGCCGCTTA 59.996 47.619 5.38 0.00 44.91 3.09
2369 2549 0.251341 ACTCCATTTGGAAGCCGCTT 60.251 50.000 4.98 4.98 44.91 4.68
2370 2550 0.618458 TACTCCATTTGGAAGCCGCT 59.382 50.000 0.18 0.00 44.91 5.52
2373 2553 4.192317 CACTACTACTCCATTTGGAAGCC 58.808 47.826 0.18 0.00 44.91 4.35
2386 2566 1.001633 CCGGCCAAACACACTACTACT 59.998 52.381 2.24 0.00 0.00 2.57
2438 2666 1.626654 GCAGTCAACCACGATCGGTG 61.627 60.000 20.98 14.44 46.57 4.94
2439 2667 1.374252 GCAGTCAACCACGATCGGT 60.374 57.895 20.98 5.55 42.71 4.69
2472 2702 2.173669 CAGTAATGCCGGCCGACTG 61.174 63.158 30.73 27.73 0.00 3.51
2473 2703 2.186903 CAGTAATGCCGGCCGACT 59.813 61.111 30.73 19.40 0.00 4.18
2474 2704 3.573491 GCAGTAATGCCGGCCGAC 61.573 66.667 30.73 18.13 0.00 4.79
2482 2714 2.124736 TGCTCCCCGCAGTAATGC 60.125 61.111 4.77 4.77 45.47 3.56
2655 2925 4.221422 CGGCATCCGTCCGTCCAT 62.221 66.667 0.00 0.00 42.73 3.41
2707 2977 0.651031 GCCGTCTTAAATGCTCCGAC 59.349 55.000 0.00 0.00 0.00 4.79
2712 2982 1.024579 CCGTGGCCGTCTTAAATGCT 61.025 55.000 0.00 0.00 0.00 3.79
2864 3171 8.794364 AGGGGCATAAATTTAGTACTAGTAGT 57.206 34.615 14.57 14.57 0.00 2.73
2873 3180 8.900802 TGGAGATTATAGGGGCATAAATTTAGT 58.099 33.333 3.94 0.00 0.00 2.24
2874 3181 9.753674 TTGGAGATTATAGGGGCATAAATTTAG 57.246 33.333 3.94 0.00 0.00 1.85
2875 3182 9.528489 GTTGGAGATTATAGGGGCATAAATTTA 57.472 33.333 0.00 0.00 0.00 1.40
2876 3183 7.454694 GGTTGGAGATTATAGGGGCATAAATTT 59.545 37.037 0.00 0.00 0.00 1.82
2877 3184 6.954102 GGTTGGAGATTATAGGGGCATAAATT 59.046 38.462 0.00 0.00 0.00 1.82
2880 3187 4.019681 CGGTTGGAGATTATAGGGGCATAA 60.020 45.833 0.00 0.00 0.00 1.90
2881 3188 3.517901 CGGTTGGAGATTATAGGGGCATA 59.482 47.826 0.00 0.00 0.00 3.14
2884 3191 1.003233 CCGGTTGGAGATTATAGGGGC 59.997 57.143 0.00 0.00 37.49 5.80
2885 3192 2.616524 TCCGGTTGGAGATTATAGGGG 58.383 52.381 0.00 0.00 40.17 4.79
2896 3203 1.007963 AGAGAATAGGGTCCGGTTGGA 59.992 52.381 0.00 0.00 43.88 3.53
2897 3204 1.413077 GAGAGAATAGGGTCCGGTTGG 59.587 57.143 0.00 0.00 0.00 3.77
2898 3205 1.413077 GGAGAGAATAGGGTCCGGTTG 59.587 57.143 0.00 0.00 0.00 3.77
2899 3206 1.691801 GGGAGAGAATAGGGTCCGGTT 60.692 57.143 0.00 0.00 0.00 4.44
2900 3207 0.105607 GGGAGAGAATAGGGTCCGGT 60.106 60.000 0.00 0.00 0.00 5.28
2901 3208 0.105658 TGGGAGAGAATAGGGTCCGG 60.106 60.000 0.00 0.00 0.00 5.14
2902 3209 2.016905 ATGGGAGAGAATAGGGTCCG 57.983 55.000 0.00 0.00 0.00 4.79
2903 3210 3.459969 ACAAATGGGAGAGAATAGGGTCC 59.540 47.826 0.00 0.00 0.00 4.46
2904 3211 4.445019 GGACAAATGGGAGAGAATAGGGTC 60.445 50.000 0.00 0.00 0.00 4.46
2905 3212 3.459969 GGACAAATGGGAGAGAATAGGGT 59.540 47.826 0.00 0.00 0.00 4.34
2906 3213 3.495100 CGGACAAATGGGAGAGAATAGGG 60.495 52.174 0.00 0.00 0.00 3.53
2907 3214 3.495100 CCGGACAAATGGGAGAGAATAGG 60.495 52.174 0.00 0.00 0.00 2.57
2908 3215 3.733337 CCGGACAAATGGGAGAGAATAG 58.267 50.000 0.00 0.00 0.00 1.73
2909 3216 3.838244 CCGGACAAATGGGAGAGAATA 57.162 47.619 0.00 0.00 0.00 1.75
2910 3217 2.717639 CCGGACAAATGGGAGAGAAT 57.282 50.000 0.00 0.00 0.00 2.40
2918 3225 2.440247 GCCCTCCCGGACAAATGG 60.440 66.667 0.73 0.00 0.00 3.16
2919 3226 1.304052 TTGCCCTCCCGGACAAATG 60.304 57.895 0.73 0.00 0.00 2.32
2920 3227 1.304134 GTTGCCCTCCCGGACAAAT 60.304 57.895 0.73 0.00 31.95 2.32
2935 3242 1.801913 CGAAGAGGCGTCCGAGTTG 60.802 63.158 2.06 0.00 0.00 3.16
2937 3244 2.359602 TCGAAGAGGCGTCCGAGT 60.360 61.111 2.06 0.00 0.00 4.18
2938 3245 2.100603 GTCGAAGAGGCGTCCGAG 59.899 66.667 7.81 0.00 36.95 4.63
2939 3246 3.437795 GGTCGAAGAGGCGTCCGA 61.438 66.667 2.06 3.21 36.95 4.55
2940 3247 4.493747 GGGTCGAAGAGGCGTCCG 62.494 72.222 2.06 0.60 39.77 4.79
2942 3249 0.601841 TTTTGGGTCGAAGAGGCGTC 60.602 55.000 0.00 0.00 36.95 5.19
2943 3250 0.179040 TTTTTGGGTCGAAGAGGCGT 60.179 50.000 0.00 0.00 36.95 5.68
2944 3251 0.237498 GTTTTTGGGTCGAAGAGGCG 59.763 55.000 0.00 0.00 36.95 5.52
2945 3252 0.596577 GGTTTTTGGGTCGAAGAGGC 59.403 55.000 0.00 0.00 36.95 4.70
2946 3253 0.872388 CGGTTTTTGGGTCGAAGAGG 59.128 55.000 0.00 0.00 36.95 3.69
2947 3254 0.237498 GCGGTTTTTGGGTCGAAGAG 59.763 55.000 0.00 0.00 36.95 2.85
2949 3256 0.382515 TTGCGGTTTTTGGGTCGAAG 59.617 50.000 0.00 0.00 0.00 3.79
2951 3258 1.726533 GGTTGCGGTTTTTGGGTCGA 61.727 55.000 0.00 0.00 0.00 4.20
2961 3313 0.872388 GAGTTTGATCGGTTGCGGTT 59.128 50.000 0.00 0.00 0.00 4.44
2963 3315 1.128692 GAAGAGTTTGATCGGTTGCGG 59.871 52.381 0.00 0.00 0.00 5.69
2964 3316 1.798223 TGAAGAGTTTGATCGGTTGCG 59.202 47.619 0.00 0.00 0.00 4.85
2965 3317 4.201822 GGTATGAAGAGTTTGATCGGTTGC 60.202 45.833 0.00 0.00 0.00 4.17
2966 3318 4.032900 CGGTATGAAGAGTTTGATCGGTTG 59.967 45.833 0.00 0.00 0.00 3.77
2967 3319 4.181578 CGGTATGAAGAGTTTGATCGGTT 58.818 43.478 0.00 0.00 0.00 4.44
2970 3322 3.782046 ACCGGTATGAAGAGTTTGATCG 58.218 45.455 4.49 0.00 0.00 3.69
2973 3325 4.610605 TTGACCGGTATGAAGAGTTTGA 57.389 40.909 7.34 0.00 0.00 2.69
2974 3326 5.682943 TTTTGACCGGTATGAAGAGTTTG 57.317 39.130 7.34 0.00 0.00 2.93
2975 3327 5.768164 ACATTTTGACCGGTATGAAGAGTTT 59.232 36.000 19.55 0.00 0.00 2.66
2976 3328 5.313712 ACATTTTGACCGGTATGAAGAGTT 58.686 37.500 19.55 0.00 0.00 3.01
2978 3330 5.391950 CCAACATTTTGACCGGTATGAAGAG 60.392 44.000 19.55 5.57 34.24 2.85
2979 3331 4.457603 CCAACATTTTGACCGGTATGAAGA 59.542 41.667 19.55 4.43 34.24 2.87
2980 3332 4.380444 CCCAACATTTTGACCGGTATGAAG 60.380 45.833 19.55 11.56 34.24 3.02
2983 3335 2.165437 CCCCAACATTTTGACCGGTATG 59.835 50.000 7.34 10.69 34.24 2.39
2984 3336 2.225167 ACCCCAACATTTTGACCGGTAT 60.225 45.455 7.34 0.00 34.24 2.73
2985 3337 1.145325 ACCCCAACATTTTGACCGGTA 59.855 47.619 7.34 0.00 34.24 4.02
2986 3338 0.105913 ACCCCAACATTTTGACCGGT 60.106 50.000 6.92 6.92 34.24 5.28
2987 3339 1.044611 AACCCCAACATTTTGACCGG 58.955 50.000 0.00 0.00 34.24 5.28
2988 3340 1.410882 ACAACCCCAACATTTTGACCG 59.589 47.619 0.00 0.00 34.24 4.79
2990 3342 3.120041 CGAACAACCCCAACATTTTGAC 58.880 45.455 0.00 0.00 34.24 3.18
2992 3344 2.478831 CCGAACAACCCCAACATTTTG 58.521 47.619 0.00 0.00 0.00 2.44
2994 3346 0.391228 GCCGAACAACCCCAACATTT 59.609 50.000 0.00 0.00 0.00 2.32
2995 3347 0.757188 TGCCGAACAACCCCAACATT 60.757 50.000 0.00 0.00 0.00 2.71
2996 3348 1.152652 TGCCGAACAACCCCAACAT 60.153 52.632 0.00 0.00 0.00 2.71
2997 3349 2.122167 GTGCCGAACAACCCCAACA 61.122 57.895 0.00 0.00 0.00 3.33
2998 3350 2.725641 GTGCCGAACAACCCCAAC 59.274 61.111 0.00 0.00 0.00 3.77
2999 3351 2.902846 CGTGCCGAACAACCCCAA 60.903 61.111 0.00 0.00 0.00 4.12
3003 3355 3.723348 GAGGCGTGCCGAACAACC 61.723 66.667 5.02 0.00 41.95 3.77
3004 3356 2.054140 TTTGAGGCGTGCCGAACAAC 62.054 55.000 16.11 3.65 41.95 3.32
3005 3357 1.820056 TTTGAGGCGTGCCGAACAA 60.820 52.632 5.02 10.52 41.95 2.83
3006 3358 2.203084 TTTGAGGCGTGCCGAACA 60.203 55.556 5.02 4.92 41.95 3.18
3007 3359 2.251371 GTTTGAGGCGTGCCGAAC 59.749 61.111 5.02 8.40 41.95 3.95
3008 3360 2.203084 TGTTTGAGGCGTGCCGAA 60.203 55.556 5.02 0.00 41.95 4.30
3009 3361 2.970324 GTGTTTGAGGCGTGCCGA 60.970 61.111 5.02 0.00 41.95 5.54
3010 3362 3.240606 CTGTGTTTGAGGCGTGCCG 62.241 63.158 5.02 0.00 41.95 5.69
3011 3363 2.639286 CTGTGTTTGAGGCGTGCC 59.361 61.111 1.67 1.67 0.00 5.01
3012 3364 2.050985 GCTGTGTTTGAGGCGTGC 60.051 61.111 0.00 0.00 0.00 5.34
3013 3365 2.639286 GGCTGTGTTTGAGGCGTG 59.361 61.111 0.00 0.00 0.00 5.34
3014 3366 2.594592 GGGCTGTGTTTGAGGCGT 60.595 61.111 0.00 0.00 36.87 5.68
3015 3367 0.676466 TATGGGCTGTGTTTGAGGCG 60.676 55.000 0.00 0.00 36.87 5.52
3016 3368 1.767759 ATATGGGCTGTGTTTGAGGC 58.232 50.000 0.00 0.00 35.29 4.70
3017 3369 4.758674 CAGATATATGGGCTGTGTTTGAGG 59.241 45.833 0.00 0.00 0.00 3.86
3018 3370 4.758674 CCAGATATATGGGCTGTGTTTGAG 59.241 45.833 8.61 0.00 36.64 3.02
3019 3371 4.717877 CCAGATATATGGGCTGTGTTTGA 58.282 43.478 8.61 0.00 36.64 2.69
3020 3372 3.254166 GCCAGATATATGGGCTGTGTTTG 59.746 47.826 17.90 0.00 44.32 2.93
3021 3373 3.490348 GCCAGATATATGGGCTGTGTTT 58.510 45.455 17.90 0.00 44.32 2.83
3022 3374 3.146104 GCCAGATATATGGGCTGTGTT 57.854 47.619 17.90 0.00 44.32 3.32
3023 3375 2.867109 GCCAGATATATGGGCTGTGT 57.133 50.000 17.90 0.00 44.32 3.72
3029 3381 3.525537 GTCGTGATGCCAGATATATGGG 58.474 50.000 17.90 0.39 40.97 4.00
3030 3382 3.119495 TCGTCGTGATGCCAGATATATGG 60.119 47.826 12.24 12.24 43.72 2.74
3031 3383 4.096732 TCGTCGTGATGCCAGATATATG 57.903 45.455 0.00 0.00 0.00 1.78
3032 3384 4.991153 ATCGTCGTGATGCCAGATATAT 57.009 40.909 0.00 0.00 35.45 0.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.