Multiple sequence alignment - TraesCS4D01G009800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G009800 chr4D 100.000 4613 0 0 1 4613 4523946 4528558 0.000000e+00 8519.0
1 TraesCS4D01G009800 chr4D 90.591 1913 142 14 2175 4086 4628109 4629984 0.000000e+00 2501.0
2 TraesCS4D01G009800 chr4D 91.104 1675 107 17 2525 4194 4650573 4652210 0.000000e+00 2230.0
3 TraesCS4D01G009800 chr4D 84.513 2105 244 41 1874 3962 4624958 4626996 0.000000e+00 2006.0
4 TraesCS4D01G009800 chr4D 86.130 1651 122 57 556 2121 4641538 4643166 0.000000e+00 1681.0
5 TraesCS4D01G009800 chr4D 88.651 793 60 18 1352 2122 4627323 4628107 0.000000e+00 939.0
6 TraesCS4D01G009800 chr4D 75.551 1542 271 80 2020 3513 450685480 450683997 0.000000e+00 662.0
7 TraesCS4D01G009800 chr4D 79.349 1075 119 53 525 1527 4623327 4624370 0.000000e+00 660.0
8 TraesCS4D01G009800 chr4D 88.674 362 30 4 2175 2536 4643169 4643519 9.170000e-117 431.0
9 TraesCS4D01G009800 chr4D 79.800 401 59 13 129 521 4639870 4640256 5.880000e-69 272.0
10 TraesCS4D01G009800 chr4D 87.245 196 18 5 1532 1726 4525756 4525945 2.790000e-52 217.0
11 TraesCS4D01G009800 chr4D 78.571 210 34 10 4247 4451 409498692 409498895 1.350000e-25 128.0
12 TraesCS4D01G009800 chr4D 95.082 61 3 0 880 940 4641788 4641848 3.800000e-16 97.1
13 TraesCS4D01G009800 chr4D 90.164 61 6 0 880 940 4524724 4524784 3.830000e-11 80.5
14 TraesCS4D01G009800 chr4D 90.164 61 6 0 779 839 4524825 4524885 3.830000e-11 80.5
15 TraesCS4D01G009800 chrUn 90.667 2025 147 17 2175 4197 47289520 47287536 0.000000e+00 2654.0
16 TraesCS4D01G009800 chrUn 90.671 2026 146 18 2175 4197 47314499 47316484 0.000000e+00 2654.0
17 TraesCS4D01G009800 chrUn 85.985 1691 101 59 556 2122 47291200 47289522 0.000000e+00 1685.0
18 TraesCS4D01G009800 chrUn 85.985 1691 101 58 556 2122 47312819 47314497 0.000000e+00 1685.0
19 TraesCS4D01G009800 chrUn 85.380 1409 155 26 1874 3273 318053898 318052532 0.000000e+00 1413.0
20 TraesCS4D01G009800 chrUn 84.634 1230 146 20 2744 3962 363439583 363438386 0.000000e+00 1184.0
21 TraesCS4D01G009800 chrUn 88.036 886 70 10 3241 4125 331270272 331269422 0.000000e+00 1016.0
22 TraesCS4D01G009800 chrUn 88.036 886 70 10 3241 4125 364133393 364132543 0.000000e+00 1016.0
23 TraesCS4D01G009800 chrUn 83.086 875 118 17 1874 2738 373130233 373131087 0.000000e+00 769.0
24 TraesCS4D01G009800 chrUn 78.305 1074 132 55 525 1526 318055531 318054487 2.380000e-167 599.0
25 TraesCS4D01G009800 chrUn 77.603 634 77 31 880 1461 373431618 373430998 1.600000e-84 324.0
26 TraesCS4D01G009800 chrUn 87.956 274 17 11 1202 1461 373129322 373129593 4.480000e-80 309.0
27 TraesCS4D01G009800 chrUn 87.956 274 17 11 1202 1461 373711698 373711969 4.480000e-80 309.0
28 TraesCS4D01G009800 chrUn 80.798 401 57 9 129 521 47294070 47293682 3.490000e-76 296.0
29 TraesCS4D01G009800 chrUn 80.798 401 57 9 129 521 47309949 47310337 3.490000e-76 296.0
30 TraesCS4D01G009800 chrUn 91.237 194 13 4 1811 2000 47290129 47289936 1.270000e-65 261.0
31 TraesCS4D01G009800 chrUn 91.237 194 13 4 1811 2000 47313890 47314083 1.270000e-65 261.0
32 TraesCS4D01G009800 chrUn 80.952 231 18 11 594 806 367932604 367932382 4.780000e-35 159.0
33 TraesCS4D01G009800 chrUn 80.952 231 18 11 594 806 373431813 373431591 4.780000e-35 159.0
34 TraesCS4D01G009800 chrUn 80.952 231 18 11 594 806 373711157 373711379 4.780000e-35 159.0
35 TraesCS4D01G009800 chrUn 82.500 120 15 3 4396 4510 55307681 55307563 2.940000e-17 100.0
36 TraesCS4D01G009800 chrUn 95.082 61 3 0 880 940 47290950 47290890 3.800000e-16 97.1
37 TraesCS4D01G009800 chrUn 95.082 61 3 0 880 940 47313069 47313129 3.800000e-16 97.1
38 TraesCS4D01G009800 chrUn 90.164 61 2 2 779 839 47290849 47290793 4.950000e-10 76.8
39 TraesCS4D01G009800 chrUn 90.164 61 2 2 779 839 47313170 47313226 4.950000e-10 76.8
40 TraesCS4D01G009800 chr1B 83.008 2201 327 29 2043 4219 46259269 46261446 0.000000e+00 1949.0
41 TraesCS4D01G009800 chr1B 84.627 683 58 19 880 1528 46256848 46257517 1.810000e-178 636.0
42 TraesCS4D01G009800 chr1B 89.417 463 39 5 1 459 46256117 46256573 4.000000e-160 575.0
43 TraesCS4D01G009800 chr1B 89.164 323 16 4 519 839 46256605 46256910 7.240000e-103 385.0
44 TraesCS4D01G009800 chr1B 78.662 553 72 22 1527 2049 46257553 46258089 4.450000e-85 326.0
45 TraesCS4D01G009800 chr1B 87.912 91 7 4 4244 4330 199526815 199526905 2.270000e-18 104.0
46 TraesCS4D01G009800 chr4B 83.950 2081 263 37 1901 3962 7513785 7515813 0.000000e+00 1927.0
47 TraesCS4D01G009800 chr4B 88.361 1031 83 11 3096 4125 7518959 7519953 0.000000e+00 1205.0
48 TraesCS4D01G009800 chr4B 87.956 274 17 11 1202 1461 7512824 7513095 4.480000e-80 309.0
49 TraesCS4D01G009800 chr4B 86.207 87 7 5 4248 4330 97107013 97106928 6.360000e-14 89.8
50 TraesCS4D01G009800 chr5B 77.974 227 43 4 4390 4610 2553257 2553482 8.050000e-28 135.0
51 TraesCS4D01G009800 chr7D 79.141 163 30 4 295 454 120262740 120262901 4.880000e-20 110.0
52 TraesCS4D01G009800 chr7B 89.773 88 6 3 4244 4329 344469726 344469812 4.880000e-20 110.0
53 TraesCS4D01G009800 chr7B 89.412 85 6 3 4248 4329 344495112 344495196 2.270000e-18 104.0
54 TraesCS4D01G009800 chr7B 89.157 83 6 3 4249 4329 344538447 344538528 2.940000e-17 100.0
55 TraesCS4D01G009800 chr7B 86.364 88 8 4 4244 4327 595922878 595922791 4.910000e-15 93.5
56 TraesCS4D01G009800 chr5A 81.600 125 19 3 308 429 626159967 626160090 2.940000e-17 100.0
57 TraesCS4D01G009800 chr2B 86.667 90 8 4 4245 4330 315892059 315892148 3.800000e-16 97.1
58 TraesCS4D01G009800 chr5D 77.711 166 30 4 301 459 412463505 412463340 1.370000e-15 95.3
59 TraesCS4D01G009800 chr4A 80.469 128 22 3 297 422 628326809 628326935 1.370000e-15 95.3
60 TraesCS4D01G009800 chr3B 83.495 103 15 2 295 396 694328420 694328319 1.370000e-15 95.3
61 TraesCS4D01G009800 chr2D 86.047 86 8 4 4247 4329 355063774 355063858 6.360000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G009800 chr4D 4523946 4528558 4612 False 2224.250000 8519 91.893250 1 4613 4 chr4D.!!$F3 4612
1 TraesCS4D01G009800 chr4D 4650573 4652210 1637 False 2230.000000 2230 91.104000 2525 4194 1 chr4D.!!$F1 1669
2 TraesCS4D01G009800 chr4D 4623327 4629984 6657 False 1526.500000 2501 85.776000 525 4086 4 chr4D.!!$F4 3561
3 TraesCS4D01G009800 chr4D 450683997 450685480 1483 True 662.000000 662 75.551000 2020 3513 1 chr4D.!!$R1 1493
4 TraesCS4D01G009800 chr4D 4639870 4643519 3649 False 620.275000 1681 87.421500 129 2536 4 chr4D.!!$F5 2407
5 TraesCS4D01G009800 chrUn 363438386 363439583 1197 True 1184.000000 1184 84.634000 2744 3962 1 chrUn.!!$R3 1218
6 TraesCS4D01G009800 chrUn 331269422 331270272 850 True 1016.000000 1016 88.036000 3241 4125 1 chrUn.!!$R2 884
7 TraesCS4D01G009800 chrUn 364132543 364133393 850 True 1016.000000 1016 88.036000 3241 4125 1 chrUn.!!$R4 884
8 TraesCS4D01G009800 chrUn 318052532 318055531 2999 True 1006.000000 1413 81.842500 525 3273 2 chrUn.!!$R7 2748
9 TraesCS4D01G009800 chrUn 47287536 47294070 6534 True 844.983333 2654 88.988833 129 4197 6 chrUn.!!$R6 4068
10 TraesCS4D01G009800 chrUn 47309949 47316484 6535 False 844.983333 2654 88.989500 129 4197 6 chrUn.!!$F1 4068
11 TraesCS4D01G009800 chrUn 373129322 373131087 1765 False 539.000000 769 85.521000 1202 2738 2 chrUn.!!$F2 1536
12 TraesCS4D01G009800 chrUn 373430998 373431813 815 True 241.500000 324 79.277500 594 1461 2 chrUn.!!$R8 867
13 TraesCS4D01G009800 chrUn 373711157 373711969 812 False 234.000000 309 84.454000 594 1461 2 chrUn.!!$F3 867
14 TraesCS4D01G009800 chr1B 46256117 46261446 5329 False 774.200000 1949 84.975600 1 4219 5 chr1B.!!$F2 4218
15 TraesCS4D01G009800 chr4B 7512824 7519953 7129 False 1147.000000 1927 86.755667 1202 4125 3 chr4B.!!$F1 2923

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
821 3437 0.456312 GTGAGAGAGCCACCGTTACG 60.456 60.0 0.0 0.0 0.0 3.18 F
1276 3991 0.109412 GTCTTCTGTCCGTACCACCG 60.109 60.0 0.0 0.0 0.0 4.94 F
1641 7557 0.871722 CGGCAATGACGGTTTTCTCA 59.128 50.0 0.0 0.0 0.0 3.27 F
3357 14793 0.608640 CTGGAGCACTTAGTTCGGGT 59.391 55.0 0.0 0.0 0.0 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2693 10120 1.140852 ACCCTTCTTTGCTTTTTGCCC 59.859 47.619 0.00 0.0 42.0 5.36 R
3059 10494 2.224621 ACTGTCACATTCTGAAGGGGTG 60.225 50.000 4.07 8.4 0.0 4.61 R
3594 15040 0.257039 CTTAGGACCCAAGGCTGCAT 59.743 55.000 0.50 0.0 0.0 3.96 R
4503 15960 0.028770 TGTCGTTGCCGCAGAAAAAG 59.971 50.000 0.00 0.0 0.0 2.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 6.420008 GGAGTCAATTTGCATCATGCTATTTC 59.580 38.462 11.84 5.65 45.31 2.17
40 41 2.388106 TTGCATCATGCTATTTCGCG 57.612 45.000 11.84 0.00 45.31 5.87
121 122 4.162690 CCGGAGCTACACCAGGGC 62.163 72.222 0.00 0.00 0.00 5.19
162 169 1.000843 GGTTGTTGTTGGGATTGGAGC 59.999 52.381 0.00 0.00 0.00 4.70
187 194 2.154462 CCATGGTCAACTCAACAGGAC 58.846 52.381 2.57 0.00 0.00 3.85
224 232 2.061509 TAGGGTGAATCGACGGATGA 57.938 50.000 0.00 0.00 31.83 2.92
225 233 0.747255 AGGGTGAATCGACGGATGAG 59.253 55.000 0.00 0.00 31.83 2.90
227 235 0.876342 GGTGAATCGACGGATGAGGC 60.876 60.000 0.00 0.00 31.83 4.70
232 240 4.933064 CGACGGATGAGGCGGCTC 62.933 72.222 30.53 30.53 0.00 4.70
233 241 3.838271 GACGGATGAGGCGGCTCA 61.838 66.667 39.24 39.24 37.79 4.26
234 242 4.148825 ACGGATGAGGCGGCTCAC 62.149 66.667 39.90 30.54 36.05 3.51
242 253 2.125350 GGCGGCTCACCTCTTCAG 60.125 66.667 0.00 0.00 0.00 3.02
306 318 7.537596 AACATGGTTTCATCATTCTTTACCA 57.462 32.000 0.00 0.00 38.43 3.25
471 485 5.682943 TCTTCCAAATTAAAGTCCACGTG 57.317 39.130 9.08 9.08 0.00 4.49
472 486 5.369833 TCTTCCAAATTAAAGTCCACGTGA 58.630 37.500 19.30 0.00 0.00 4.35
486 500 3.119137 TCCACGTGAGATGTGAATACCAG 60.119 47.826 19.30 0.00 37.29 4.00
491 505 6.535150 CACGTGAGATGTGAATACCAGTAAAT 59.465 38.462 10.90 0.00 37.29 1.40
492 506 7.064609 CACGTGAGATGTGAATACCAGTAAATT 59.935 37.037 10.90 0.00 37.29 1.82
493 507 7.606456 ACGTGAGATGTGAATACCAGTAAATTT 59.394 33.333 0.00 0.00 0.00 1.82
496 510 9.513906 TGAGATGTGAATACCAGTAAATTTTCA 57.486 29.630 0.00 0.00 0.00 2.69
521 535 7.453980 ACAAATACATTTAGCATTTCGCATG 57.546 32.000 0.00 0.00 46.13 4.06
523 537 8.187480 ACAAATACATTTAGCATTTCGCATGTA 58.813 29.630 0.00 0.00 46.13 2.29
690 3291 2.419198 CTGTAGCTAGCTGGCCCG 59.581 66.667 27.68 7.60 0.00 6.13
691 3292 3.154473 TGTAGCTAGCTGGCCCGG 61.154 66.667 27.68 0.00 0.00 5.73
707 3308 2.046892 GGGGCATCCATCGATCCG 60.047 66.667 0.00 0.00 35.00 4.18
818 3434 2.651361 CGTGAGAGAGCCACCGTT 59.349 61.111 0.00 0.00 0.00 4.44
821 3437 0.456312 GTGAGAGAGCCACCGTTACG 60.456 60.000 0.00 0.00 0.00 3.18
825 3441 3.475774 GAGCCACCGTTACGTGCG 61.476 66.667 3.52 2.41 32.10 5.34
841 3457 1.078848 GCGTGCACTCCTCTCCAAT 60.079 57.895 16.19 0.00 0.00 3.16
955 3583 1.074084 TCTCCTGTCCTCGTCAACTCT 59.926 52.381 0.00 0.00 0.00 3.24
1084 3748 1.815421 CGTGCCTCCCCTCAATTCG 60.815 63.158 0.00 0.00 0.00 3.34
1103 3771 3.675619 ATAGCGGCCGTGTGGTTCC 62.676 63.158 28.70 7.06 37.67 3.62
1123 3792 0.819666 GGGCTGGAATTCGGTCCATC 60.820 60.000 13.53 1.06 46.66 3.51
1128 3797 3.201290 CTGGAATTCGGTCCATCTTCTG 58.799 50.000 0.00 0.00 46.66 3.02
1191 3891 4.094887 CGAATATTACCAACAGCTGCAGTT 59.905 41.667 15.27 6.37 0.00 3.16
1220 3935 3.118956 GGACGAGGTCATCAACATCTTCT 60.119 47.826 0.00 0.00 37.19 2.85
1258 3973 2.865119 TGCTCAATGACATCACCAGT 57.135 45.000 0.00 0.00 0.00 4.00
1270 3985 2.281539 TCACCAGTCTTCTGTCCGTA 57.718 50.000 0.00 0.00 39.82 4.02
1273 3988 1.254026 CCAGTCTTCTGTCCGTACCA 58.746 55.000 0.00 0.00 39.82 3.25
1274 3989 1.067776 CCAGTCTTCTGTCCGTACCAC 60.068 57.143 0.00 0.00 39.82 4.16
1275 3990 1.067776 CAGTCTTCTGTCCGTACCACC 60.068 57.143 0.00 0.00 36.97 4.61
1276 3991 0.109412 GTCTTCTGTCCGTACCACCG 60.109 60.000 0.00 0.00 0.00 4.94
1284 4003 3.773630 CGTACCACCGCGCACAAG 61.774 66.667 8.75 0.00 0.00 3.16
1285 4004 4.084888 GTACCACCGCGCACAAGC 62.085 66.667 8.75 0.00 37.42 4.01
1544 7458 3.572255 AGTGTCCAACGGCAATGTTATTT 59.428 39.130 0.00 0.00 0.00 1.40
1568 7483 4.387862 TGGCTCGACGAGAAATTAAAACTC 59.612 41.667 28.43 5.66 0.00 3.01
1630 7545 1.732941 ATTCAGCGTAACGGCAATGA 58.267 45.000 0.00 0.00 34.64 2.57
1639 7554 1.314730 AACGGCAATGACGGTTTTCT 58.685 45.000 14.88 0.00 39.02 2.52
1640 7555 0.872388 ACGGCAATGACGGTTTTCTC 59.128 50.000 14.88 0.00 39.02 2.87
1641 7557 0.871722 CGGCAATGACGGTTTTCTCA 59.128 50.000 0.00 0.00 0.00 3.27
1686 7602 0.944386 GTCGGTGCTGTGTCATTTGT 59.056 50.000 0.00 0.00 0.00 2.83
1717 7636 8.173775 GTCGTATACGCATAAATAGAAGAGCTA 58.826 37.037 20.42 0.00 39.60 3.32
1739 7668 8.262933 AGCTAGGTTTAGTATAACGGAATTGTT 58.737 33.333 0.00 0.00 35.86 2.83
1791 7725 9.471084 AAAACTCGTTAAGGAAATAATTGTTGG 57.529 29.630 0.00 0.00 0.00 3.77
1792 7726 6.617879 ACTCGTTAAGGAAATAATTGTTGGC 58.382 36.000 0.00 0.00 0.00 4.52
1827 7774 0.947244 CTCGGCAATGTTATGGCTCC 59.053 55.000 0.00 0.00 43.23 4.70
1938 8131 4.567159 GTCTGTCCACATTTCTATTCGGAC 59.433 45.833 0.00 0.00 42.64 4.79
1974 8167 1.266019 CGTTTGCGGTTGTCGTATACG 60.266 52.381 19.23 19.23 46.57 3.06
2002 8195 6.976636 AATAGAAGAGCTGAGTTTAGTTGC 57.023 37.500 0.00 0.00 0.00 4.17
2017 8210 8.895932 AGTTTAGTTGCGTTTCATATTTCATC 57.104 30.769 0.00 0.00 0.00 2.92
2097 9477 5.828299 TTGTCGTCTTGTGGAAATTTCTT 57.172 34.783 17.42 0.00 0.00 2.52
2123 9507 9.996554 TGTACTATTGGATGATATTCGACAATT 57.003 29.630 0.00 0.00 31.71 2.32
2130 9518 6.202762 TGGATGATATTCGACAATTGCAGTAC 59.797 38.462 5.05 0.00 0.00 2.73
2150 9538 6.256757 CAGTACTCTAGGTCAGCAATAAAAGC 59.743 42.308 0.00 0.00 0.00 3.51
2173 9563 8.930846 AGCTGCCATTCAGAAAATATTACTAT 57.069 30.769 0.00 0.00 45.72 2.12
2203 9593 4.207955 TGATCTCCTGCTCTATGTAACGT 58.792 43.478 0.00 0.00 0.00 3.99
2255 9653 9.770097 CCACTACATATATTGATGTTGTCTCTT 57.230 33.333 3.60 0.00 41.73 2.85
2264 9662 5.964958 TGATGTTGTCTCTTTTTGGATCC 57.035 39.130 4.20 4.20 0.00 3.36
2315 9713 2.658268 GCCTTGTGCGGTTTGTGC 60.658 61.111 0.00 0.00 0.00 4.57
2318 9716 1.945662 CTTGTGCGGTTTGTGCTGC 60.946 57.895 0.00 0.00 40.94 5.25
2352 9751 5.033326 AGTTCGAAGAGACGAGTTTAGTC 57.967 43.478 0.00 0.00 43.04 2.59
2474 9893 7.601886 CACATAAGGCCAACAATGTTATTTTCA 59.398 33.333 5.01 0.00 30.32 2.69
2581 10006 3.229293 TGTGAATCAACATTCCTTGGCA 58.771 40.909 0.00 0.00 38.14 4.92
2582 10007 3.256383 TGTGAATCAACATTCCTTGGCAG 59.744 43.478 0.00 0.00 38.14 4.85
2584 10009 3.256383 TGAATCAACATTCCTTGGCAGTG 59.744 43.478 0.00 0.00 38.14 3.66
2651 10078 3.063997 GCATGTATCAGTGTTGGTGCTAC 59.936 47.826 0.00 0.00 0.00 3.58
2693 10120 1.068474 CACTTTCGCCAGTTCTACGG 58.932 55.000 0.00 0.00 0.00 4.02
2764 10193 9.109393 TGTTGCACAATAATTATTCTCTACTCC 57.891 33.333 7.76 0.00 0.00 3.85
2896 10325 5.662657 TCACTTCATCTCCAATCAGGTGATA 59.337 40.000 0.00 0.00 46.24 2.15
3035 10470 4.401519 TCAAACAACGGGTTACAATTTCCA 59.598 37.500 0.00 0.00 39.29 3.53
3059 10494 6.535274 AAGCATTTCAATTCAGTTTGCTTC 57.465 33.333 1.68 0.00 43.32 3.86
3202 10637 4.136796 GCATCTTATGTGCCTATGTTGGA 58.863 43.478 0.00 0.00 36.61 3.53
3212 10647 5.304101 TGTGCCTATGTTGGATTTTGACTTT 59.696 36.000 0.00 0.00 0.00 2.66
3232 10667 5.177696 ACTTTCAACTTCTCACAAGTATCGC 59.822 40.000 0.00 0.00 0.00 4.58
3260 14696 9.692749 AATACATAGACTGGTCGTATATTGTTG 57.307 33.333 0.00 0.00 27.85 3.33
3355 14791 2.743636 TTCTGGAGCACTTAGTTCGG 57.256 50.000 0.00 0.00 0.00 4.30
3357 14793 0.608640 CTGGAGCACTTAGTTCGGGT 59.391 55.000 0.00 0.00 0.00 5.28
3405 14841 9.445786 TCGTTGAATGTTTCTGTCTTAATTTTC 57.554 29.630 0.00 0.00 0.00 2.29
3497 14935 4.382386 ACTTAACCTTTGCCATGTACCT 57.618 40.909 0.00 0.00 0.00 3.08
3498 14936 5.508280 ACTTAACCTTTGCCATGTACCTA 57.492 39.130 0.00 0.00 0.00 3.08
3528 14966 4.137116 TCCGACATAACTTAAGCAGCAT 57.863 40.909 1.29 0.00 0.00 3.79
3552 14990 7.400599 TTGTACTTCGTAGACCTGTCATAAT 57.599 36.000 0.00 0.00 34.32 1.28
3555 14993 6.716934 ACTTCGTAGACCTGTCATAATCAT 57.283 37.500 0.00 0.00 34.32 2.45
3594 15040 3.706086 TGATGTAGTTGGAGCAGCAGATA 59.294 43.478 0.00 0.00 0.00 1.98
3617 15067 2.188817 CAGCCTTGGGTCCTAAGTAGT 58.811 52.381 13.49 0.00 0.00 2.73
3628 15078 8.669055 TGGGTCCTAAGTAGTAGTAATTGAAA 57.331 34.615 0.55 0.00 0.00 2.69
3755 15207 3.663025 TCACATGACGATTCTTGCTTCA 58.337 40.909 0.00 0.00 31.41 3.02
3756 15208 4.064388 TCACATGACGATTCTTGCTTCAA 58.936 39.130 0.00 0.00 31.41 2.69
3822 15274 4.295870 TGTGTGTCGATGTCTTTGTCTAC 58.704 43.478 0.00 0.00 0.00 2.59
3830 15282 5.465390 TCGATGTCTTTGTCTACCAAAACTG 59.535 40.000 0.00 0.00 42.31 3.16
3854 15306 0.448990 CTTGTGTGTCATGGATGGCG 59.551 55.000 0.00 0.00 34.48 5.69
3886 15338 7.298507 TGTGCGTAAACTCTATATTTGGTTC 57.701 36.000 0.00 0.00 0.00 3.62
3933 15385 8.865001 TCTTGTATGTTGTTTGCTGTTTTTAAC 58.135 29.630 0.00 0.00 0.00 2.01
4030 15484 4.634012 TCTTGTTGTTGGCTGGTATACT 57.366 40.909 2.25 0.00 0.00 2.12
4113 15570 1.768112 AAACTGACCGTTTGTCCGCG 61.768 55.000 0.00 0.00 43.90 6.46
4125 15582 0.965866 TGTCCGCGAGAGGAGAACAT 60.966 55.000 8.23 0.00 41.68 2.71
4139 15596 4.103785 AGGAGAACATGAGATATGTTGGGG 59.896 45.833 9.73 0.00 41.76 4.96
4197 15654 1.527034 GTCATGAAGCTTGCAGTCCA 58.473 50.000 2.10 0.00 0.00 4.02
4200 15657 1.303799 ATGAAGCTTGCAGTCCAGCG 61.304 55.000 2.10 0.00 37.31 5.18
4219 15676 1.663695 GGCGAGGCAGTTGCTTAATA 58.336 50.000 3.88 0.00 41.70 0.98
4220 15677 2.014128 GGCGAGGCAGTTGCTTAATAA 58.986 47.619 3.88 0.00 41.70 1.40
4221 15678 2.422127 GGCGAGGCAGTTGCTTAATAAA 59.578 45.455 3.88 0.00 41.70 1.40
4222 15679 3.426323 GCGAGGCAGTTGCTTAATAAAC 58.574 45.455 3.88 0.00 41.70 2.01
4223 15680 3.119990 GCGAGGCAGTTGCTTAATAAACA 60.120 43.478 3.88 0.00 41.70 2.83
4224 15681 4.438744 GCGAGGCAGTTGCTTAATAAACAT 60.439 41.667 3.88 0.00 41.70 2.71
4225 15682 5.220777 GCGAGGCAGTTGCTTAATAAACATA 60.221 40.000 3.88 0.00 41.70 2.29
4226 15683 6.676943 GCGAGGCAGTTGCTTAATAAACATAA 60.677 38.462 3.88 0.00 41.70 1.90
4227 15684 7.247728 CGAGGCAGTTGCTTAATAAACATAAA 58.752 34.615 3.88 0.00 41.70 1.40
4228 15685 7.218204 CGAGGCAGTTGCTTAATAAACATAAAC 59.782 37.037 3.88 0.00 41.70 2.01
4229 15686 7.320399 AGGCAGTTGCTTAATAAACATAAACC 58.680 34.615 3.88 0.00 41.70 3.27
4230 15687 6.533723 GGCAGTTGCTTAATAAACATAAACCC 59.466 38.462 3.88 0.00 41.70 4.11
4231 15688 7.320399 GCAGTTGCTTAATAAACATAAACCCT 58.680 34.615 0.00 0.00 38.21 4.34
4232 15689 7.817478 GCAGTTGCTTAATAAACATAAACCCTT 59.183 33.333 0.00 0.00 38.21 3.95
4276 15733 8.686739 ATAATATTAGGTGGGTCTATTCTGCT 57.313 34.615 1.02 0.00 0.00 4.24
4277 15734 9.784376 ATAATATTAGGTGGGTCTATTCTGCTA 57.216 33.333 1.02 0.00 0.00 3.49
4278 15735 8.506196 AATATTAGGTGGGTCTATTCTGCTAA 57.494 34.615 0.00 0.00 0.00 3.09
4279 15736 5.609533 TTAGGTGGGTCTATTCTGCTAAC 57.390 43.478 0.00 0.00 0.00 2.34
4280 15737 3.450904 AGGTGGGTCTATTCTGCTAACA 58.549 45.455 0.00 0.00 0.00 2.41
4281 15738 3.197983 AGGTGGGTCTATTCTGCTAACAC 59.802 47.826 0.00 0.00 0.00 3.32
4282 15739 3.532542 GTGGGTCTATTCTGCTAACACC 58.467 50.000 0.00 0.00 0.00 4.16
4283 15740 2.504175 TGGGTCTATTCTGCTAACACCC 59.496 50.000 0.00 0.00 42.20 4.61
4284 15741 2.772515 GGGTCTATTCTGCTAACACCCT 59.227 50.000 0.00 0.00 39.23 4.34
4285 15742 3.200165 GGGTCTATTCTGCTAACACCCTT 59.800 47.826 0.00 0.00 39.23 3.95
4286 15743 4.407945 GGGTCTATTCTGCTAACACCCTTA 59.592 45.833 0.00 0.00 39.23 2.69
4287 15744 5.104652 GGGTCTATTCTGCTAACACCCTTAA 60.105 44.000 0.00 0.00 39.23 1.85
4288 15745 6.049790 GGTCTATTCTGCTAACACCCTTAAG 58.950 44.000 0.00 0.00 0.00 1.85
4289 15746 6.127140 GGTCTATTCTGCTAACACCCTTAAGA 60.127 42.308 3.36 0.00 0.00 2.10
4290 15747 7.328737 GTCTATTCTGCTAACACCCTTAAGAA 58.671 38.462 3.36 0.00 0.00 2.52
4291 15748 7.278203 GTCTATTCTGCTAACACCCTTAAGAAC 59.722 40.741 3.36 0.00 0.00 3.01
4292 15749 4.281898 TCTGCTAACACCCTTAAGAACC 57.718 45.455 3.36 0.00 0.00 3.62
4293 15750 3.908103 TCTGCTAACACCCTTAAGAACCT 59.092 43.478 3.36 0.00 0.00 3.50
4294 15751 4.349930 TCTGCTAACACCCTTAAGAACCTT 59.650 41.667 3.36 0.00 0.00 3.50
4295 15752 5.544948 TCTGCTAACACCCTTAAGAACCTTA 59.455 40.000 3.36 0.00 0.00 2.69
4296 15753 6.214819 TCTGCTAACACCCTTAAGAACCTTAT 59.785 38.462 3.36 0.00 0.00 1.73
4297 15754 6.786122 TGCTAACACCCTTAAGAACCTTATT 58.214 36.000 3.36 0.00 0.00 1.40
4298 15755 7.235804 TGCTAACACCCTTAAGAACCTTATTT 58.764 34.615 3.36 0.00 0.00 1.40
4299 15756 7.726738 TGCTAACACCCTTAAGAACCTTATTTT 59.273 33.333 3.36 0.00 0.00 1.82
4300 15757 8.027189 GCTAACACCCTTAAGAACCTTATTTTG 58.973 37.037 3.36 0.00 0.00 2.44
4301 15758 6.340962 ACACCCTTAAGAACCTTATTTTGC 57.659 37.500 3.36 0.00 0.00 3.68
4302 15759 5.836358 ACACCCTTAAGAACCTTATTTTGCA 59.164 36.000 3.36 0.00 0.00 4.08
4303 15760 6.156519 CACCCTTAAGAACCTTATTTTGCAC 58.843 40.000 3.36 0.00 0.00 4.57
4304 15761 5.836358 ACCCTTAAGAACCTTATTTTGCACA 59.164 36.000 3.36 0.00 0.00 4.57
4305 15762 6.156519 CCCTTAAGAACCTTATTTTGCACAC 58.843 40.000 3.36 0.00 0.00 3.82
4306 15763 6.239176 CCCTTAAGAACCTTATTTTGCACACA 60.239 38.462 3.36 0.00 0.00 3.72
4307 15764 7.206687 CCTTAAGAACCTTATTTTGCACACAA 58.793 34.615 3.36 0.00 0.00 3.33
4308 15765 7.708752 CCTTAAGAACCTTATTTTGCACACAAA 59.291 33.333 3.36 0.00 43.97 2.83
4309 15766 9.260002 CTTAAGAACCTTATTTTGCACACAAAT 57.740 29.630 0.00 0.84 44.96 2.32
4310 15767 7.713764 AAGAACCTTATTTTGCACACAAATC 57.286 32.000 0.00 0.00 44.96 2.17
4311 15768 6.223120 AGAACCTTATTTTGCACACAAATCC 58.777 36.000 0.00 0.00 44.96 3.01
4312 15769 4.893608 ACCTTATTTTGCACACAAATCCC 58.106 39.130 0.00 0.00 44.96 3.85
4313 15770 4.592778 ACCTTATTTTGCACACAAATCCCT 59.407 37.500 0.00 0.00 44.96 4.20
4314 15771 5.170748 CCTTATTTTGCACACAAATCCCTC 58.829 41.667 0.00 0.00 44.96 4.30
4315 15772 5.279406 CCTTATTTTGCACACAAATCCCTCA 60.279 40.000 0.00 0.00 44.96 3.86
4316 15773 4.895668 ATTTTGCACACAAATCCCTCAT 57.104 36.364 0.00 0.00 44.96 2.90
4317 15774 4.686191 TTTTGCACACAAATCCCTCATT 57.314 36.364 0.00 0.00 44.96 2.57
4318 15775 3.940209 TTGCACACAAATCCCTCATTC 57.060 42.857 0.00 0.00 31.21 2.67
4319 15776 3.159213 TGCACACAAATCCCTCATTCT 57.841 42.857 0.00 0.00 0.00 2.40
4320 15777 2.821378 TGCACACAAATCCCTCATTCTG 59.179 45.455 0.00 0.00 0.00 3.02
4321 15778 2.416431 GCACACAAATCCCTCATTCTGC 60.416 50.000 0.00 0.00 0.00 4.26
4322 15779 3.087031 CACACAAATCCCTCATTCTGCT 58.913 45.455 0.00 0.00 0.00 4.24
4323 15780 4.264253 CACACAAATCCCTCATTCTGCTA 58.736 43.478 0.00 0.00 0.00 3.49
4324 15781 4.701651 CACACAAATCCCTCATTCTGCTAA 59.298 41.667 0.00 0.00 0.00 3.09
4325 15782 4.702131 ACACAAATCCCTCATTCTGCTAAC 59.298 41.667 0.00 0.00 0.00 2.34
4326 15783 4.701651 CACAAATCCCTCATTCTGCTAACA 59.298 41.667 0.00 0.00 0.00 2.41
4327 15784 4.702131 ACAAATCCCTCATTCTGCTAACAC 59.298 41.667 0.00 0.00 0.00 3.32
4328 15785 3.567478 ATCCCTCATTCTGCTAACACC 57.433 47.619 0.00 0.00 0.00 4.16
4329 15786 1.559682 TCCCTCATTCTGCTAACACCC 59.440 52.381 0.00 0.00 0.00 4.61
4330 15787 1.408822 CCCTCATTCTGCTAACACCCC 60.409 57.143 0.00 0.00 0.00 4.95
4331 15788 1.408822 CCTCATTCTGCTAACACCCCC 60.409 57.143 0.00 0.00 0.00 5.40
4332 15789 1.281867 CTCATTCTGCTAACACCCCCA 59.718 52.381 0.00 0.00 0.00 4.96
4333 15790 1.004277 TCATTCTGCTAACACCCCCAC 59.996 52.381 0.00 0.00 0.00 4.61
4334 15791 0.331616 ATTCTGCTAACACCCCCACC 59.668 55.000 0.00 0.00 0.00 4.61
4335 15792 0.770557 TTCTGCTAACACCCCCACCT 60.771 55.000 0.00 0.00 0.00 4.00
4336 15793 1.198759 TCTGCTAACACCCCCACCTC 61.199 60.000 0.00 0.00 0.00 3.85
4337 15794 2.198304 CTGCTAACACCCCCACCTCC 62.198 65.000 0.00 0.00 0.00 4.30
4338 15795 2.228480 GCTAACACCCCCACCTCCA 61.228 63.158 0.00 0.00 0.00 3.86
4339 15796 1.683441 CTAACACCCCCACCTCCAC 59.317 63.158 0.00 0.00 0.00 4.02
4340 15797 2.180159 CTAACACCCCCACCTCCACG 62.180 65.000 0.00 0.00 0.00 4.94
4345 15802 4.489771 CCCCACCTCCACGCCATC 62.490 72.222 0.00 0.00 0.00 3.51
4346 15803 4.838152 CCCACCTCCACGCCATCG 62.838 72.222 0.00 0.00 42.43 3.84
4359 15816 4.888325 CATCGCCCCTCCCCTCCT 62.888 72.222 0.00 0.00 0.00 3.69
4360 15817 4.565850 ATCGCCCCTCCCCTCCTC 62.566 72.222 0.00 0.00 0.00 3.71
4367 15824 4.150454 CTCCCCTCCTCGCCTCCT 62.150 72.222 0.00 0.00 0.00 3.69
4368 15825 2.698788 TCCCCTCCTCGCCTCCTA 60.699 66.667 0.00 0.00 0.00 2.94
4369 15826 2.522193 CCCCTCCTCGCCTCCTAC 60.522 72.222 0.00 0.00 0.00 3.18
4370 15827 2.279073 CCCTCCTCGCCTCCTACA 59.721 66.667 0.00 0.00 0.00 2.74
4371 15828 1.830408 CCCTCCTCGCCTCCTACAG 60.830 68.421 0.00 0.00 0.00 2.74
4372 15829 2.494530 CCTCCTCGCCTCCTACAGC 61.495 68.421 0.00 0.00 0.00 4.40
4373 15830 1.754621 CTCCTCGCCTCCTACAGCA 60.755 63.158 0.00 0.00 0.00 4.41
4374 15831 1.733402 CTCCTCGCCTCCTACAGCAG 61.733 65.000 0.00 0.00 0.00 4.24
4383 15840 3.854669 CTACAGCAGGAGGGCCGG 61.855 72.222 0.00 0.00 39.96 6.13
4412 15869 4.806339 CCCTTCCCCTCTCCGCCT 62.806 72.222 0.00 0.00 0.00 5.52
4413 15870 3.157949 CCTTCCCCTCTCCGCCTC 61.158 72.222 0.00 0.00 0.00 4.70
4414 15871 3.157949 CTTCCCCTCTCCGCCTCC 61.158 72.222 0.00 0.00 0.00 4.30
4415 15872 3.684628 TTCCCCTCTCCGCCTCCT 61.685 66.667 0.00 0.00 0.00 3.69
4416 15873 2.299727 CTTCCCCTCTCCGCCTCCTA 62.300 65.000 0.00 0.00 0.00 2.94
4417 15874 2.522193 CCCCTCTCCGCCTCCTAC 60.522 72.222 0.00 0.00 0.00 3.18
4418 15875 2.522193 CCCTCTCCGCCTCCTACC 60.522 72.222 0.00 0.00 0.00 3.18
4419 15876 2.907917 CCTCTCCGCCTCCTACCG 60.908 72.222 0.00 0.00 0.00 4.02
4420 15877 3.597728 CTCTCCGCCTCCTACCGC 61.598 72.222 0.00 0.00 0.00 5.68
4461 15918 3.855853 GCCCTCCTCGCCTCCTTC 61.856 72.222 0.00 0.00 0.00 3.46
4462 15919 2.364317 CCCTCCTCGCCTCCTTCA 60.364 66.667 0.00 0.00 0.00 3.02
4463 15920 2.430610 CCCTCCTCGCCTCCTTCAG 61.431 68.421 0.00 0.00 0.00 3.02
4464 15921 1.684049 CCTCCTCGCCTCCTTCAGT 60.684 63.158 0.00 0.00 0.00 3.41
4465 15922 1.515020 CTCCTCGCCTCCTTCAGTG 59.485 63.158 0.00 0.00 0.00 3.66
4466 15923 1.954362 CTCCTCGCCTCCTTCAGTGG 61.954 65.000 0.00 0.00 0.00 4.00
4467 15924 2.581354 CTCGCCTCCTTCAGTGGG 59.419 66.667 0.00 0.00 0.00 4.61
4468 15925 1.984570 CTCGCCTCCTTCAGTGGGA 60.985 63.158 0.00 0.00 0.00 4.37
4470 15927 2.270527 GCCTCCTTCAGTGGGAGC 59.729 66.667 9.36 3.10 46.48 4.70
4471 15928 2.581354 CCTCCTTCAGTGGGAGCG 59.419 66.667 9.36 1.27 46.48 5.03
4472 15929 2.581354 CTCCTTCAGTGGGAGCGG 59.419 66.667 2.86 0.00 42.95 5.52
4473 15930 3.672295 CTCCTTCAGTGGGAGCGGC 62.672 68.421 2.86 0.00 42.95 6.53
4474 15931 4.785453 CCTTCAGTGGGAGCGGCC 62.785 72.222 0.00 0.00 0.00 6.13
4475 15932 4.020617 CTTCAGTGGGAGCGGCCA 62.021 66.667 2.24 0.00 38.95 5.36
4476 15933 3.965539 CTTCAGTGGGAGCGGCCAG 62.966 68.421 2.24 0.00 38.95 4.85
4487 15944 3.108289 CGGCCAGCAGCGATATCG 61.108 66.667 20.79 20.79 45.17 2.92
4497 15954 4.425099 CGATATCGCCCCTCTCCT 57.575 61.111 12.95 0.00 0.00 3.69
4498 15955 2.185238 CGATATCGCCCCTCTCCTC 58.815 63.158 12.95 0.00 0.00 3.71
4499 15956 1.316706 CGATATCGCCCCTCTCCTCC 61.317 65.000 12.95 0.00 0.00 4.30
4500 15957 0.973496 GATATCGCCCCTCTCCTCCC 60.973 65.000 0.00 0.00 0.00 4.30
4501 15958 1.447964 ATATCGCCCCTCTCCTCCCT 61.448 60.000 0.00 0.00 0.00 4.20
4502 15959 2.373338 TATCGCCCCTCTCCTCCCTG 62.373 65.000 0.00 0.00 0.00 4.45
4504 15961 4.814041 GCCCCTCTCCTCCCTGCT 62.814 72.222 0.00 0.00 0.00 4.24
4505 15962 2.041928 CCCCTCTCCTCCCTGCTT 59.958 66.667 0.00 0.00 0.00 3.91
4506 15963 1.617839 CCCCTCTCCTCCCTGCTTT 60.618 63.158 0.00 0.00 0.00 3.51
4507 15964 1.210885 CCCCTCTCCTCCCTGCTTTT 61.211 60.000 0.00 0.00 0.00 2.27
4508 15965 0.701147 CCCTCTCCTCCCTGCTTTTT 59.299 55.000 0.00 0.00 0.00 1.94
4509 15966 1.340502 CCCTCTCCTCCCTGCTTTTTC 60.341 57.143 0.00 0.00 0.00 2.29
4510 15967 1.632920 CCTCTCCTCCCTGCTTTTTCT 59.367 52.381 0.00 0.00 0.00 2.52
4511 15968 2.617532 CCTCTCCTCCCTGCTTTTTCTG 60.618 54.545 0.00 0.00 0.00 3.02
4512 15969 1.172175 CTCCTCCCTGCTTTTTCTGC 58.828 55.000 0.00 0.00 0.00 4.26
4513 15970 0.606401 TCCTCCCTGCTTTTTCTGCG 60.606 55.000 0.00 0.00 0.00 5.18
4514 15971 1.589716 CCTCCCTGCTTTTTCTGCGG 61.590 60.000 0.00 0.00 36.63 5.69
4515 15972 2.205243 CTCCCTGCTTTTTCTGCGGC 62.205 60.000 0.00 0.00 35.62 6.53
4516 15973 2.563798 CCCTGCTTTTTCTGCGGCA 61.564 57.895 1.29 1.29 35.62 5.69
4517 15974 1.363443 CCTGCTTTTTCTGCGGCAA 59.637 52.632 3.44 0.00 35.62 4.52
4518 15975 0.940991 CCTGCTTTTTCTGCGGCAAC 60.941 55.000 3.44 0.00 35.62 4.17
4530 15987 2.359850 GGCAACGACATGGGAGCA 60.360 61.111 0.00 0.00 0.00 4.26
4531 15988 2.690778 GGCAACGACATGGGAGCAC 61.691 63.158 0.00 0.00 0.00 4.40
4532 15989 2.690778 GCAACGACATGGGAGCACC 61.691 63.158 0.00 0.00 40.81 5.01
4533 15990 2.047274 AACGACATGGGAGCACCG 60.047 61.111 0.00 0.00 44.64 4.94
4534 15991 2.579657 AACGACATGGGAGCACCGA 61.580 57.895 0.00 0.00 44.64 4.69
4535 15992 1.899437 AACGACATGGGAGCACCGAT 61.899 55.000 0.00 0.00 44.64 4.18
4538 15995 2.903855 CATGGGAGCACCGATGGC 60.904 66.667 15.82 0.00 44.81 4.40
4539 15996 4.195334 ATGGGAGCACCGATGGCC 62.195 66.667 0.00 0.00 44.64 5.36
4545 16002 4.740822 GCACCGATGGCCCACCTT 62.741 66.667 0.00 0.00 36.63 3.50
4546 16003 2.035626 CACCGATGGCCCACCTTT 59.964 61.111 0.00 0.00 36.63 3.11
4547 16004 2.046285 CACCGATGGCCCACCTTTC 61.046 63.158 0.00 0.00 36.63 2.62
4548 16005 2.440247 CCGATGGCCCACCTTTCC 60.440 66.667 0.00 0.00 36.63 3.13
4549 16006 2.354729 CGATGGCCCACCTTTCCA 59.645 61.111 0.00 0.00 36.63 3.53
4550 16007 1.304052 CGATGGCCCACCTTTCCAA 60.304 57.895 0.00 0.00 36.63 3.53
4551 16008 1.315257 CGATGGCCCACCTTTCCAAG 61.315 60.000 0.00 0.00 36.63 3.61
4552 16009 1.607801 GATGGCCCACCTTTCCAAGC 61.608 60.000 0.00 0.00 36.63 4.01
4553 16010 2.997315 GGCCCACCTTTCCAAGCC 60.997 66.667 0.00 0.00 0.00 4.35
4554 16011 2.118294 GCCCACCTTTCCAAGCCT 59.882 61.111 0.00 0.00 0.00 4.58
4555 16012 1.533994 GCCCACCTTTCCAAGCCTT 60.534 57.895 0.00 0.00 0.00 4.35
4556 16013 1.536073 GCCCACCTTTCCAAGCCTTC 61.536 60.000 0.00 0.00 0.00 3.46
4557 16014 0.113190 CCCACCTTTCCAAGCCTTCT 59.887 55.000 0.00 0.00 0.00 2.85
4558 16015 1.481242 CCCACCTTTCCAAGCCTTCTT 60.481 52.381 0.00 0.00 0.00 2.52
4559 16016 1.889170 CCACCTTTCCAAGCCTTCTTC 59.111 52.381 0.00 0.00 0.00 2.87
4560 16017 2.489802 CCACCTTTCCAAGCCTTCTTCT 60.490 50.000 0.00 0.00 0.00 2.85
4561 16018 2.555757 CACCTTTCCAAGCCTTCTTCTG 59.444 50.000 0.00 0.00 0.00 3.02
4562 16019 1.543358 CCTTTCCAAGCCTTCTTCTGC 59.457 52.381 0.00 0.00 0.00 4.26
4563 16020 1.198637 CTTTCCAAGCCTTCTTCTGCG 59.801 52.381 0.00 0.00 0.00 5.18
4564 16021 1.237285 TTCCAAGCCTTCTTCTGCGC 61.237 55.000 0.00 0.00 0.00 6.09
4565 16022 2.694760 CCAAGCCTTCTTCTGCGCC 61.695 63.158 4.18 0.00 0.00 6.53
4566 16023 1.968017 CAAGCCTTCTTCTGCGCCA 60.968 57.895 4.18 0.00 0.00 5.69
4567 16024 1.673665 AAGCCTTCTTCTGCGCCAG 60.674 57.895 4.18 2.24 0.00 4.85
4568 16025 3.808656 GCCTTCTTCTGCGCCAGC 61.809 66.667 4.18 0.00 45.41 4.85
4606 16063 3.732849 CCACCCCTCCAGGCCTTC 61.733 72.222 0.00 0.00 0.00 3.46
4607 16064 2.612115 CACCCCTCCAGGCCTTCT 60.612 66.667 0.00 0.00 0.00 2.85
4608 16065 2.211279 ACCCCTCCAGGCCTTCTT 59.789 61.111 0.00 0.00 0.00 2.52
4609 16066 1.925972 ACCCCTCCAGGCCTTCTTC 60.926 63.158 0.00 0.00 0.00 2.87
4610 16067 1.617839 CCCCTCCAGGCCTTCTTCT 60.618 63.158 0.00 0.00 0.00 2.85
4611 16068 1.606531 CCCTCCAGGCCTTCTTCTG 59.393 63.158 0.00 0.00 0.00 3.02
4612 16069 1.204113 CCCTCCAGGCCTTCTTCTGT 61.204 60.000 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.134694 GCAAATTGACTCCCGCGAC 59.865 57.895 8.23 0.00 0.00 5.19
121 122 1.981254 CATAAGTTGCAAAGCCCACG 58.019 50.000 0.00 0.00 0.00 4.94
144 145 0.958091 CGCTCCAATCCCAACAACAA 59.042 50.000 0.00 0.00 0.00 2.83
162 169 1.131126 GTTGAGTTGACCATGGCATCG 59.869 52.381 13.04 0.00 0.00 3.84
225 233 2.125350 CTGAAGAGGTGAGCCGCC 60.125 66.667 0.00 0.00 40.50 6.13
227 235 1.153939 CGTCTGAAGAGGTGAGCCG 60.154 63.158 0.00 0.00 40.50 5.52
231 239 1.474478 GCTGATCGTCTGAAGAGGTGA 59.526 52.381 0.00 0.00 0.00 4.02
232 240 1.470632 GGCTGATCGTCTGAAGAGGTG 60.471 57.143 0.00 0.00 0.00 4.00
233 241 0.820871 GGCTGATCGTCTGAAGAGGT 59.179 55.000 0.00 0.00 0.00 3.85
234 242 0.248825 CGGCTGATCGTCTGAAGAGG 60.249 60.000 0.00 0.00 0.00 3.69
302 314 3.449377 TGACATCCGTGCTATTCTTGGTA 59.551 43.478 0.00 0.00 0.00 3.25
303 315 2.236146 TGACATCCGTGCTATTCTTGGT 59.764 45.455 0.00 0.00 0.00 3.67
306 318 5.431765 AGAAATGACATCCGTGCTATTCTT 58.568 37.500 0.00 0.00 0.00 2.52
413 426 6.661805 GGAACCCCTGTGAATAGTAAATTTGA 59.338 38.462 0.00 0.00 0.00 2.69
450 464 5.468746 TCTCACGTGGACTTTAATTTGGAAG 59.531 40.000 17.00 0.00 0.00 3.46
492 506 8.431593 GCGAAATGCTAAATGTATTTGTTGAAA 58.568 29.630 0.27 0.00 40.25 2.69
493 507 7.596621 TGCGAAATGCTAAATGTATTTGTTGAA 59.403 29.630 0.27 0.00 46.63 2.69
496 510 7.545265 ACATGCGAAATGCTAAATGTATTTGTT 59.455 29.630 0.00 0.00 46.63 2.83
531 649 9.159364 AGTGCACATATGTATATTGCTAATGAG 57.841 33.333 21.04 0.00 32.77 2.90
690 3291 2.046892 CGGATCGATGGATGCCCC 60.047 66.667 0.54 0.00 37.70 5.80
691 3292 1.374758 GACGGATCGATGGATGCCC 60.375 63.158 0.54 0.00 37.70 5.36
702 3303 2.354821 GCTACATTTTGGTGGACGGATC 59.645 50.000 0.00 0.00 0.00 3.36
707 3308 1.885887 TGCAGCTACATTTTGGTGGAC 59.114 47.619 0.00 0.00 32.94 4.02
821 3437 2.433318 GGAGAGGAGTGCACGCAC 60.433 66.667 22.36 14.28 46.50 5.34
825 3441 1.830477 AGAGATTGGAGAGGAGTGCAC 59.170 52.381 9.40 9.40 0.00 4.57
841 3457 1.762370 TGGCCGCTATCAATGAAGAGA 59.238 47.619 0.00 0.00 0.00 3.10
864 3485 4.167268 GAGTGCTCGTTAAACTCTACTGG 58.833 47.826 0.00 0.00 37.84 4.00
927 3550 0.324275 GAGGACAGGAGAGGAGTGCT 60.324 60.000 0.00 0.00 36.62 4.40
955 3583 1.308069 GGAATTCGAAGCTGCTGGCA 61.308 55.000 1.35 0.00 44.79 4.92
1069 3733 1.609320 GCTATCGAATTGAGGGGAGGC 60.609 57.143 0.00 0.00 0.00 4.70
1084 3748 2.125269 AACCACACGGCCGCTATC 60.125 61.111 28.58 0.00 34.57 2.08
1103 3771 2.513897 GGACCGAATTCCAGCCCG 60.514 66.667 0.00 0.00 35.49 6.13
1191 3891 1.934220 GATGACCTCGTCCTGCGTCA 61.934 60.000 0.00 0.00 42.13 4.35
1193 3893 1.532604 TTGATGACCTCGTCCTGCGT 61.533 55.000 0.00 0.00 42.13 5.24
1220 3935 4.351938 CCTGTCGGCGTCGTGGAA 62.352 66.667 10.18 0.00 37.69 3.53
1258 3973 1.870055 GCGGTGGTACGGACAGAAGA 61.870 60.000 0.00 0.00 0.00 2.87
1282 4001 0.043334 TAAGGAGAGCAGAGGGGCTT 59.957 55.000 0.00 0.00 45.99 4.35
1284 4003 0.684535 GATAAGGAGAGCAGAGGGGC 59.315 60.000 0.00 0.00 0.00 5.80
1285 4004 1.347062 GGATAAGGAGAGCAGAGGGG 58.653 60.000 0.00 0.00 0.00 4.79
1419 4146 1.963515 GGGAAACAAATCACCTGCAGT 59.036 47.619 13.81 0.00 0.00 4.40
1544 7458 4.753107 AGTTTTAATTTCTCGTCGAGCCAA 59.247 37.500 17.61 12.48 0.00 4.52
1630 7545 4.819105 TGTGGATAGATGAGAAAACCGT 57.181 40.909 0.00 0.00 0.00 4.83
1686 7602 6.737118 TCTATTTATGCGTATACGACAACCA 58.263 36.000 28.66 16.17 43.02 3.67
1717 7636 6.094464 GCCAACAATTCCGTTATACTAAACCT 59.906 38.462 0.00 0.00 0.00 3.50
1756 7690 9.758651 ATTTCCTTAACGAGTTTTAGCATTTTT 57.241 25.926 0.00 0.00 0.00 1.94
1791 7725 1.601430 CGAGTACTCCCGTTAGGTAGC 59.399 57.143 17.23 0.00 36.75 3.58
1792 7726 2.216898 CCGAGTACTCCCGTTAGGTAG 58.783 57.143 17.23 0.00 36.75 3.18
1827 7774 7.123830 AGACGACAAAGTTTTAATTTCTCGTG 58.876 34.615 7.43 0.00 40.01 4.35
1858 7805 7.766278 GCATATCACTAGTAATAACAGGATGGG 59.234 40.741 0.00 0.00 43.62 4.00
1938 8131 1.415288 AACGACACAACACCGACACG 61.415 55.000 0.00 0.00 0.00 4.49
1974 8167 8.655651 ACTAAACTCAGCTCTTCTATTTATGC 57.344 34.615 0.00 0.00 0.00 3.14
2002 8195 9.158364 CAATTCCGTTAGATGAAATATGAAACG 57.842 33.333 0.00 0.00 38.28 3.60
2017 8210 2.031683 GGAATGCCGACAATTCCGTTAG 59.968 50.000 7.63 0.00 35.12 2.34
2097 9477 9.996554 AATTGTCGAATATCATCCAATAGTACA 57.003 29.630 0.00 0.00 0.00 2.90
2123 9507 2.215942 TGCTGACCTAGAGTACTGCA 57.784 50.000 0.00 0.00 35.56 4.41
2169 9559 8.663209 AGAGCAGGAGATCATTAATACATAGT 57.337 34.615 0.00 0.00 30.99 2.12
2173 9563 8.427902 ACATAGAGCAGGAGATCATTAATACA 57.572 34.615 0.00 0.00 30.99 2.29
2218 9616 9.588096 TCAATATATGTAGTGGAGAGAAGCTAA 57.412 33.333 0.00 0.00 0.00 3.09
2219 9617 9.760926 ATCAATATATGTAGTGGAGAGAAGCTA 57.239 33.333 0.00 0.00 0.00 3.32
2221 9619 8.310382 ACATCAATATATGTAGTGGAGAGAAGC 58.690 37.037 0.00 0.00 38.31 3.86
2225 9623 9.416794 GACAACATCAATATATGTAGTGGAGAG 57.583 37.037 0.00 0.00 39.16 3.20
2226 9624 9.147732 AGACAACATCAATATATGTAGTGGAGA 57.852 33.333 0.00 0.00 39.16 3.71
2239 9637 7.148255 CGGATCCAAAAAGAGACAACATCAATA 60.148 37.037 13.41 0.00 0.00 1.90
2255 9653 2.030401 CACGCCGACGGATCCAAAA 61.030 57.895 20.50 0.00 46.04 2.44
2315 9713 2.927477 TCGAACTATTGCTAAACGGCAG 59.073 45.455 0.00 0.00 43.39 4.85
2318 9716 5.004535 GTCTCTTCGAACTATTGCTAAACGG 59.995 44.000 0.00 0.00 0.00 4.44
2327 9725 7.143514 ACTAAACTCGTCTCTTCGAACTATT 57.856 36.000 0.00 0.00 39.34 1.73
2331 9729 3.839655 CGACTAAACTCGTCTCTTCGAAC 59.160 47.826 0.00 0.00 39.34 3.95
2352 9751 4.516359 CATTTCCATTTGCACAAAACACG 58.484 39.130 0.00 0.00 33.56 4.49
2442 9861 5.890985 ACATTGTTGGCCTTATGTGCTATAA 59.109 36.000 3.32 0.00 30.51 0.98
2651 10078 1.399727 CGCAGGCAAGGTTAACTTTCG 60.400 52.381 5.42 0.07 37.29 3.46
2693 10120 1.140852 ACCCTTCTTTGCTTTTTGCCC 59.859 47.619 0.00 0.00 42.00 5.36
2764 10193 4.277672 CAGAGGGGATTTGATAAGCACATG 59.722 45.833 0.00 0.00 0.00 3.21
2859 10288 5.564550 AGATGAAGTGAACAAGCAGGTTAT 58.435 37.500 0.00 0.00 0.00 1.89
2945 10378 6.364706 CAGAAGTCTAGAGTAACAAGTTGCAG 59.635 42.308 1.81 0.00 0.00 4.41
3035 10470 6.930667 AAGCAAACTGAATTGAAATGCTTT 57.069 29.167 4.41 0.00 46.97 3.51
3059 10494 2.224621 ACTGTCACATTCTGAAGGGGTG 60.225 50.000 4.07 8.40 0.00 4.61
3202 10637 7.830739 ACTTGTGAGAAGTTGAAAGTCAAAAT 58.169 30.769 0.00 0.00 38.22 1.82
3212 10647 4.251543 TGCGATACTTGTGAGAAGTTGA 57.748 40.909 0.00 0.00 0.00 3.18
3232 10667 9.692749 ACAATATACGACCAGTCTATGTATTTG 57.307 33.333 0.00 6.84 0.00 2.32
3332 14768 4.319549 CCGAACTAAGTGCTCCAGAAAAAC 60.320 45.833 0.00 0.00 0.00 2.43
3333 14769 3.813166 CCGAACTAAGTGCTCCAGAAAAA 59.187 43.478 0.00 0.00 0.00 1.94
3334 14770 3.399330 CCGAACTAAGTGCTCCAGAAAA 58.601 45.455 0.00 0.00 0.00 2.29
3363 14799 5.092554 TCAACGAGCAAATGGGACTATAA 57.907 39.130 0.00 0.00 0.00 0.98
3364 14800 4.746535 TCAACGAGCAAATGGGACTATA 57.253 40.909 0.00 0.00 0.00 1.31
3366 14802 3.410631 TTCAACGAGCAAATGGGACTA 57.589 42.857 0.00 0.00 0.00 2.59
3405 14841 8.259872 CGTATACATCTAACGAAACATTGTGAG 58.740 37.037 3.32 0.00 38.89 3.51
3507 14945 3.603158 TGCTGCTTAAGTTATGTCGGA 57.397 42.857 4.02 0.00 0.00 4.55
3528 14966 6.822667 TTATGACAGGTCTACGAAGTACAA 57.177 37.500 0.00 0.00 45.11 2.41
3594 15040 0.257039 CTTAGGACCCAAGGCTGCAT 59.743 55.000 0.50 0.00 0.00 3.96
3617 15067 8.458843 GCTATGCTCTTTTGGTTTCAATTACTA 58.541 33.333 0.00 0.00 32.28 1.82
3628 15078 0.394352 CGGGGCTATGCTCTTTTGGT 60.394 55.000 0.00 0.00 0.00 3.67
3772 15224 1.251251 AGTTCCATTTGCAGAGTGGC 58.749 50.000 8.71 0.00 33.01 5.01
3777 15229 3.953612 AGACAACAAGTTCCATTTGCAGA 59.046 39.130 0.00 0.00 0.00 4.26
3822 15274 6.612247 TGACACACAAGTATACAGTTTTGG 57.388 37.500 5.50 0.00 0.00 3.28
3830 15282 4.273480 GCCATCCATGACACACAAGTATAC 59.727 45.833 0.00 0.00 0.00 1.47
3854 15306 1.082104 GTTTACGCACAGCCAGCAC 60.082 57.895 0.00 0.00 0.00 4.40
3886 15338 1.650825 AACCAAGCCAAAAAGCAACG 58.349 45.000 0.00 0.00 34.23 4.10
3933 15385 6.918022 GGAAACAACATTTCACAAGAAGGTAG 59.082 38.462 2.14 0.00 34.71 3.18
4004 15458 4.058721 ACCAGCCAACAACAAGATTTTC 57.941 40.909 0.00 0.00 0.00 2.29
4030 15484 0.397941 CCAGGAAGCAACACCTCTCA 59.602 55.000 0.00 0.00 33.91 3.27
4057 15514 4.020307 TGCTGTGAGATTCTGATTGTGGTA 60.020 41.667 0.00 0.00 0.00 3.25
4063 15520 2.871022 GCGATGCTGTGAGATTCTGATT 59.129 45.455 0.00 0.00 0.00 2.57
4113 15570 6.222389 CCAACATATCTCATGTTCTCCTCTC 58.778 44.000 0.00 0.00 39.94 3.20
4125 15582 1.140312 GCCCTCCCCAACATATCTCA 58.860 55.000 0.00 0.00 0.00 3.27
4139 15596 0.329596 ATCACCTTTCAGTGGCCCTC 59.670 55.000 0.00 0.00 38.34 4.30
4200 15657 1.663695 TATTAAGCAACTGCCTCGCC 58.336 50.000 0.00 0.00 43.38 5.54
4202 15659 4.678509 TGTTTATTAAGCAACTGCCTCG 57.321 40.909 0.00 0.00 43.38 4.63
4250 15707 9.784376 AGCAGAATAGACCCACCTAATATTATA 57.216 33.333 0.00 0.00 0.00 0.98
4251 15708 8.686739 AGCAGAATAGACCCACCTAATATTAT 57.313 34.615 0.00 0.00 0.00 1.28
4252 15709 9.610104 TTAGCAGAATAGACCCACCTAATATTA 57.390 33.333 0.00 0.00 0.00 0.98
4253 15710 8.376270 GTTAGCAGAATAGACCCACCTAATATT 58.624 37.037 0.00 0.00 0.00 1.28
4254 15711 7.512746 TGTTAGCAGAATAGACCCACCTAATAT 59.487 37.037 0.00 0.00 0.00 1.28
4255 15712 6.842280 TGTTAGCAGAATAGACCCACCTAATA 59.158 38.462 0.00 0.00 0.00 0.98
4256 15713 5.665812 TGTTAGCAGAATAGACCCACCTAAT 59.334 40.000 0.00 0.00 0.00 1.73
4257 15714 5.027460 TGTTAGCAGAATAGACCCACCTAA 58.973 41.667 0.00 0.00 0.00 2.69
4258 15715 4.404715 GTGTTAGCAGAATAGACCCACCTA 59.595 45.833 0.00 0.00 0.00 3.08
4259 15716 3.197983 GTGTTAGCAGAATAGACCCACCT 59.802 47.826 0.00 0.00 0.00 4.00
4260 15717 3.532542 GTGTTAGCAGAATAGACCCACC 58.467 50.000 0.00 0.00 0.00 4.61
4261 15718 3.532542 GGTGTTAGCAGAATAGACCCAC 58.467 50.000 0.00 0.00 0.00 4.61
4262 15719 2.504175 GGGTGTTAGCAGAATAGACCCA 59.496 50.000 0.00 0.00 41.17 4.51
4263 15720 2.772515 AGGGTGTTAGCAGAATAGACCC 59.227 50.000 0.00 0.00 41.74 4.46
4264 15721 4.489306 AAGGGTGTTAGCAGAATAGACC 57.511 45.455 0.00 0.00 0.00 3.85
4265 15722 6.875076 TCTTAAGGGTGTTAGCAGAATAGAC 58.125 40.000 1.85 0.00 0.00 2.59
4266 15723 7.328737 GTTCTTAAGGGTGTTAGCAGAATAGA 58.671 38.462 1.85 0.00 0.00 1.98
4267 15724 6.539103 GGTTCTTAAGGGTGTTAGCAGAATAG 59.461 42.308 1.85 0.00 0.00 1.73
4268 15725 6.214819 AGGTTCTTAAGGGTGTTAGCAGAATA 59.785 38.462 1.85 0.00 0.00 1.75
4269 15726 5.014228 AGGTTCTTAAGGGTGTTAGCAGAAT 59.986 40.000 1.85 0.00 0.00 2.40
4270 15727 4.349930 AGGTTCTTAAGGGTGTTAGCAGAA 59.650 41.667 1.85 0.00 0.00 3.02
4271 15728 3.908103 AGGTTCTTAAGGGTGTTAGCAGA 59.092 43.478 1.85 0.00 0.00 4.26
4272 15729 4.287766 AGGTTCTTAAGGGTGTTAGCAG 57.712 45.455 1.85 0.00 0.00 4.24
4273 15730 4.717279 AAGGTTCTTAAGGGTGTTAGCA 57.283 40.909 1.85 0.00 0.00 3.49
4274 15731 7.698506 AAATAAGGTTCTTAAGGGTGTTAGC 57.301 36.000 1.85 0.00 0.00 3.09
4275 15732 8.027189 GCAAAATAAGGTTCTTAAGGGTGTTAG 58.973 37.037 1.85 0.00 0.00 2.34
4276 15733 7.506261 TGCAAAATAAGGTTCTTAAGGGTGTTA 59.494 33.333 1.85 0.00 0.00 2.41
4277 15734 6.325286 TGCAAAATAAGGTTCTTAAGGGTGTT 59.675 34.615 1.85 0.00 0.00 3.32
4278 15735 5.836358 TGCAAAATAAGGTTCTTAAGGGTGT 59.164 36.000 1.85 0.00 0.00 4.16
4279 15736 6.156519 GTGCAAAATAAGGTTCTTAAGGGTG 58.843 40.000 1.85 0.00 0.00 4.61
4280 15737 5.836358 TGTGCAAAATAAGGTTCTTAAGGGT 59.164 36.000 1.85 0.00 0.00 4.34
4281 15738 6.156519 GTGTGCAAAATAAGGTTCTTAAGGG 58.843 40.000 1.85 0.00 0.00 3.95
4282 15739 6.744112 TGTGTGCAAAATAAGGTTCTTAAGG 58.256 36.000 1.85 0.00 0.00 2.69
4283 15740 8.641499 TTTGTGTGCAAAATAAGGTTCTTAAG 57.359 30.769 0.00 0.00 41.15 1.85
4284 15741 9.255304 GATTTGTGTGCAAAATAAGGTTCTTAA 57.745 29.630 0.00 0.00 46.23 1.85
4285 15742 7.870445 GGATTTGTGTGCAAAATAAGGTTCTTA 59.130 33.333 0.00 0.00 46.23 2.10
4286 15743 6.705825 GGATTTGTGTGCAAAATAAGGTTCTT 59.294 34.615 0.00 0.00 46.23 2.52
4287 15744 6.223120 GGATTTGTGTGCAAAATAAGGTTCT 58.777 36.000 0.00 0.00 46.23 3.01
4288 15745 5.408299 GGGATTTGTGTGCAAAATAAGGTTC 59.592 40.000 0.00 0.00 46.23 3.62
4289 15746 5.071653 AGGGATTTGTGTGCAAAATAAGGTT 59.928 36.000 0.00 0.00 46.23 3.50
4290 15747 4.592778 AGGGATTTGTGTGCAAAATAAGGT 59.407 37.500 0.00 0.00 46.23 3.50
4291 15748 5.151297 AGGGATTTGTGTGCAAAATAAGG 57.849 39.130 0.00 0.00 46.23 2.69
4292 15749 5.782047 TGAGGGATTTGTGTGCAAAATAAG 58.218 37.500 0.00 0.00 46.23 1.73
4293 15750 5.798125 TGAGGGATTTGTGTGCAAAATAA 57.202 34.783 0.00 0.00 46.23 1.40
4294 15751 5.999205 ATGAGGGATTTGTGTGCAAAATA 57.001 34.783 0.00 0.00 46.23 1.40
4295 15752 4.895668 ATGAGGGATTTGTGTGCAAAAT 57.104 36.364 0.00 0.00 46.23 1.82
4296 15753 4.344679 AGAATGAGGGATTTGTGTGCAAAA 59.655 37.500 0.00 0.00 46.23 2.44
4297 15754 4.262121 CAGAATGAGGGATTTGTGTGCAAA 60.262 41.667 0.00 0.00 43.56 3.68
4298 15755 3.256383 CAGAATGAGGGATTTGTGTGCAA 59.744 43.478 0.00 0.00 39.69 4.08
4299 15756 2.821378 CAGAATGAGGGATTTGTGTGCA 59.179 45.455 0.00 0.00 39.69 4.57
4300 15757 2.416431 GCAGAATGAGGGATTTGTGTGC 60.416 50.000 0.00 0.00 39.69 4.57
4301 15758 3.087031 AGCAGAATGAGGGATTTGTGTG 58.913 45.455 0.00 0.00 39.69 3.82
4302 15759 3.446442 AGCAGAATGAGGGATTTGTGT 57.554 42.857 0.00 0.00 39.69 3.72
4303 15760 4.701651 TGTTAGCAGAATGAGGGATTTGTG 59.298 41.667 0.00 0.00 39.69 3.33
4304 15761 4.702131 GTGTTAGCAGAATGAGGGATTTGT 59.298 41.667 0.00 0.00 39.69 2.83
4305 15762 4.096984 GGTGTTAGCAGAATGAGGGATTTG 59.903 45.833 0.00 0.00 39.69 2.32
4306 15763 4.273318 GGTGTTAGCAGAATGAGGGATTT 58.727 43.478 0.00 0.00 39.69 2.17
4307 15764 3.372025 GGGTGTTAGCAGAATGAGGGATT 60.372 47.826 0.00 0.00 39.69 3.01
4308 15765 2.173569 GGGTGTTAGCAGAATGAGGGAT 59.826 50.000 0.00 0.00 39.69 3.85
4309 15766 1.559682 GGGTGTTAGCAGAATGAGGGA 59.440 52.381 0.00 0.00 39.69 4.20
4310 15767 1.408822 GGGGTGTTAGCAGAATGAGGG 60.409 57.143 0.00 0.00 39.69 4.30
4311 15768 1.408822 GGGGGTGTTAGCAGAATGAGG 60.409 57.143 0.00 0.00 39.69 3.86
4312 15769 1.281867 TGGGGGTGTTAGCAGAATGAG 59.718 52.381 0.00 0.00 39.69 2.90
4313 15770 1.004277 GTGGGGGTGTTAGCAGAATGA 59.996 52.381 0.00 0.00 39.69 2.57
4314 15771 1.463674 GTGGGGGTGTTAGCAGAATG 58.536 55.000 0.00 0.00 40.87 2.67
4315 15772 0.331616 GGTGGGGGTGTTAGCAGAAT 59.668 55.000 0.00 0.00 0.00 2.40
4316 15773 0.770557 AGGTGGGGGTGTTAGCAGAA 60.771 55.000 0.00 0.00 0.00 3.02
4317 15774 1.151899 AGGTGGGGGTGTTAGCAGA 60.152 57.895 0.00 0.00 0.00 4.26
4318 15775 1.299976 GAGGTGGGGGTGTTAGCAG 59.700 63.158 0.00 0.00 0.00 4.24
4319 15776 2.228480 GGAGGTGGGGGTGTTAGCA 61.228 63.158 0.00 0.00 0.00 3.49
4320 15777 2.228480 TGGAGGTGGGGGTGTTAGC 61.228 63.158 0.00 0.00 0.00 3.09
4321 15778 1.683441 GTGGAGGTGGGGGTGTTAG 59.317 63.158 0.00 0.00 0.00 2.34
4322 15779 2.218454 CGTGGAGGTGGGGGTGTTA 61.218 63.158 0.00 0.00 0.00 2.41
4323 15780 3.566210 CGTGGAGGTGGGGGTGTT 61.566 66.667 0.00 0.00 0.00 3.32
4328 15785 4.489771 GATGGCGTGGAGGTGGGG 62.490 72.222 0.00 0.00 0.00 4.96
4329 15786 4.838152 CGATGGCGTGGAGGTGGG 62.838 72.222 0.00 0.00 0.00 4.61
4342 15799 4.888325 AGGAGGGGAGGGGCGATG 62.888 72.222 0.00 0.00 0.00 3.84
4343 15800 4.565850 GAGGAGGGGAGGGGCGAT 62.566 72.222 0.00 0.00 0.00 4.58
4350 15807 2.769120 TAGGAGGCGAGGAGGGGAG 61.769 68.421 0.00 0.00 0.00 4.30
4351 15808 2.698788 TAGGAGGCGAGGAGGGGA 60.699 66.667 0.00 0.00 0.00 4.81
4352 15809 2.522193 GTAGGAGGCGAGGAGGGG 60.522 72.222 0.00 0.00 0.00 4.79
4353 15810 1.830408 CTGTAGGAGGCGAGGAGGG 60.830 68.421 0.00 0.00 0.00 4.30
4354 15811 2.494530 GCTGTAGGAGGCGAGGAGG 61.495 68.421 0.00 0.00 0.00 4.30
4355 15812 1.733402 CTGCTGTAGGAGGCGAGGAG 61.733 65.000 0.00 0.00 0.00 3.69
4356 15813 1.754621 CTGCTGTAGGAGGCGAGGA 60.755 63.158 0.00 0.00 0.00 3.71
4357 15814 2.811101 CTGCTGTAGGAGGCGAGG 59.189 66.667 0.00 0.00 0.00 4.63
4366 15823 3.854669 CCGGCCCTCCTGCTGTAG 61.855 72.222 0.00 0.00 35.80 2.74
4395 15852 4.806339 AGGCGGAGAGGGGAAGGG 62.806 72.222 0.00 0.00 0.00 3.95
4396 15853 3.157949 GAGGCGGAGAGGGGAAGG 61.158 72.222 0.00 0.00 0.00 3.46
4397 15854 2.299727 TAGGAGGCGGAGAGGGGAAG 62.300 65.000 0.00 0.00 0.00 3.46
4398 15855 2.322156 TAGGAGGCGGAGAGGGGAA 61.322 63.158 0.00 0.00 0.00 3.97
4399 15856 2.698788 TAGGAGGCGGAGAGGGGA 60.699 66.667 0.00 0.00 0.00 4.81
4400 15857 2.522193 GTAGGAGGCGGAGAGGGG 60.522 72.222 0.00 0.00 0.00 4.79
4401 15858 2.522193 GGTAGGAGGCGGAGAGGG 60.522 72.222 0.00 0.00 0.00 4.30
4402 15859 2.907917 CGGTAGGAGGCGGAGAGG 60.908 72.222 0.00 0.00 0.00 3.69
4403 15860 3.597728 GCGGTAGGAGGCGGAGAG 61.598 72.222 0.00 0.00 0.00 3.20
4444 15901 3.855853 GAAGGAGGCGAGGAGGGC 61.856 72.222 0.00 0.00 0.00 5.19
4445 15902 2.364317 TGAAGGAGGCGAGGAGGG 60.364 66.667 0.00 0.00 0.00 4.30
4446 15903 1.684049 ACTGAAGGAGGCGAGGAGG 60.684 63.158 0.00 0.00 0.00 4.30
4447 15904 1.515020 CACTGAAGGAGGCGAGGAG 59.485 63.158 0.00 0.00 0.00 3.69
4448 15905 1.984570 CCACTGAAGGAGGCGAGGA 60.985 63.158 0.00 0.00 0.00 3.71
4449 15906 2.581354 CCACTGAAGGAGGCGAGG 59.419 66.667 0.00 0.00 0.00 4.63
4450 15907 1.954362 CTCCCACTGAAGGAGGCGAG 61.954 65.000 9.09 0.00 46.14 5.03
4451 15908 1.984570 CTCCCACTGAAGGAGGCGA 60.985 63.158 9.09 0.00 46.14 5.54
4452 15909 2.581354 CTCCCACTGAAGGAGGCG 59.419 66.667 9.09 0.00 46.14 5.52
4456 15913 3.706373 GCCGCTCCCACTGAAGGA 61.706 66.667 0.00 0.00 0.00 3.36
4457 15914 4.785453 GGCCGCTCCCACTGAAGG 62.785 72.222 0.00 0.00 0.00 3.46
4458 15915 3.965539 CTGGCCGCTCCCACTGAAG 62.966 68.421 0.00 0.00 0.00 3.02
4459 15916 4.020617 CTGGCCGCTCCCACTGAA 62.021 66.667 0.00 0.00 0.00 3.02
4467 15924 3.873026 ATATCGCTGCTGGCCGCTC 62.873 63.158 18.14 10.36 40.11 5.03
4468 15925 3.873026 GATATCGCTGCTGGCCGCT 62.873 63.158 18.14 3.07 40.11 5.52
4469 15926 3.418068 GATATCGCTGCTGGCCGC 61.418 66.667 11.92 11.92 37.74 6.53
4470 15927 3.108289 CGATATCGCTGCTGGCCG 61.108 66.667 12.95 0.00 37.74 6.13
4480 15937 1.316706 GGAGGAGAGGGGCGATATCG 61.317 65.000 20.79 20.79 43.27 2.92
4481 15938 0.973496 GGGAGGAGAGGGGCGATATC 60.973 65.000 0.00 0.00 0.00 1.63
4482 15939 1.079438 GGGAGGAGAGGGGCGATAT 59.921 63.158 0.00 0.00 0.00 1.63
4483 15940 2.091924 AGGGAGGAGAGGGGCGATA 61.092 63.158 0.00 0.00 0.00 2.92
4484 15941 3.443479 AGGGAGGAGAGGGGCGAT 61.443 66.667 0.00 0.00 0.00 4.58
4485 15942 4.465446 CAGGGAGGAGAGGGGCGA 62.465 72.222 0.00 0.00 0.00 5.54
4487 15944 4.814041 AGCAGGGAGGAGAGGGGC 62.814 72.222 0.00 0.00 0.00 5.80
4488 15945 1.210885 AAAAGCAGGGAGGAGAGGGG 61.211 60.000 0.00 0.00 0.00 4.79
4489 15946 0.701147 AAAAAGCAGGGAGGAGAGGG 59.299 55.000 0.00 0.00 0.00 4.30
4490 15947 1.632920 AGAAAAAGCAGGGAGGAGAGG 59.367 52.381 0.00 0.00 0.00 3.69
4491 15948 2.709213 CAGAAAAAGCAGGGAGGAGAG 58.291 52.381 0.00 0.00 0.00 3.20
4492 15949 1.271597 GCAGAAAAAGCAGGGAGGAGA 60.272 52.381 0.00 0.00 0.00 3.71
4493 15950 1.172175 GCAGAAAAAGCAGGGAGGAG 58.828 55.000 0.00 0.00 0.00 3.69
4494 15951 0.606401 CGCAGAAAAAGCAGGGAGGA 60.606 55.000 0.00 0.00 0.00 3.71
4495 15952 1.589716 CCGCAGAAAAAGCAGGGAGG 61.590 60.000 0.00 0.00 0.00 4.30
4496 15953 1.878775 CCGCAGAAAAAGCAGGGAG 59.121 57.895 0.00 0.00 0.00 4.30
4497 15954 2.268076 GCCGCAGAAAAAGCAGGGA 61.268 57.895 0.00 0.00 0.00 4.20
4498 15955 2.086251 TTGCCGCAGAAAAAGCAGGG 62.086 55.000 0.00 0.00 36.44 4.45
4499 15956 0.940991 GTTGCCGCAGAAAAAGCAGG 60.941 55.000 0.00 0.00 36.44 4.85
4500 15957 1.270777 CGTTGCCGCAGAAAAAGCAG 61.271 55.000 0.00 0.00 36.44 4.24
4501 15958 1.299014 CGTTGCCGCAGAAAAAGCA 60.299 52.632 0.00 0.00 0.00 3.91
4502 15959 1.008995 TCGTTGCCGCAGAAAAAGC 60.009 52.632 0.00 0.00 0.00 3.51
4503 15960 0.028770 TGTCGTTGCCGCAGAAAAAG 59.971 50.000 0.00 0.00 0.00 2.27
4504 15961 0.665835 ATGTCGTTGCCGCAGAAAAA 59.334 45.000 0.00 0.00 0.00 1.94
4505 15962 0.040514 CATGTCGTTGCCGCAGAAAA 60.041 50.000 0.00 0.00 0.00 2.29
4506 15963 1.573932 CATGTCGTTGCCGCAGAAA 59.426 52.632 0.00 0.00 0.00 2.52
4507 15964 2.324330 CCATGTCGTTGCCGCAGAA 61.324 57.895 0.00 0.00 0.00 3.02
4508 15965 2.741985 CCATGTCGTTGCCGCAGA 60.742 61.111 0.00 0.00 0.00 4.26
4509 15966 3.803082 CCCATGTCGTTGCCGCAG 61.803 66.667 0.00 0.00 0.00 5.18
4510 15967 4.321966 TCCCATGTCGTTGCCGCA 62.322 61.111 0.00 0.00 0.00 5.69
4511 15968 3.499737 CTCCCATGTCGTTGCCGC 61.500 66.667 0.00 0.00 0.00 6.53
4512 15969 3.499737 GCTCCCATGTCGTTGCCG 61.500 66.667 0.00 0.00 0.00 5.69
4513 15970 2.359850 TGCTCCCATGTCGTTGCC 60.360 61.111 0.00 0.00 0.00 4.52
4514 15971 2.690778 GGTGCTCCCATGTCGTTGC 61.691 63.158 0.00 0.00 0.00 4.17
4515 15972 2.390599 CGGTGCTCCCATGTCGTTG 61.391 63.158 0.00 0.00 0.00 4.10
4516 15973 1.899437 ATCGGTGCTCCCATGTCGTT 61.899 55.000 0.00 0.00 0.00 3.85
4517 15974 2.359169 ATCGGTGCTCCCATGTCGT 61.359 57.895 0.00 0.00 0.00 4.34
4518 15975 1.884464 CATCGGTGCTCCCATGTCG 60.884 63.158 4.43 0.00 0.00 4.35
4519 15976 1.524621 CCATCGGTGCTCCCATGTC 60.525 63.158 10.85 0.00 0.00 3.06
4520 15977 2.591753 CCATCGGTGCTCCCATGT 59.408 61.111 10.85 0.00 0.00 3.21
4521 15978 2.903855 GCCATCGGTGCTCCCATG 60.904 66.667 5.52 5.52 0.00 3.66
4522 15979 4.195334 GGCCATCGGTGCTCCCAT 62.195 66.667 0.00 0.00 0.00 4.00
4528 15985 4.740822 AAGGTGGGCCATCGGTGC 62.741 66.667 10.70 0.00 37.19 5.01
4529 15986 2.035626 AAAGGTGGGCCATCGGTG 59.964 61.111 10.70 0.00 37.19 4.94
4530 15987 2.355115 GAAAGGTGGGCCATCGGT 59.645 61.111 10.70 1.17 37.19 4.69
4531 15988 2.440247 GGAAAGGTGGGCCATCGG 60.440 66.667 10.70 0.00 37.19 4.18
4532 15989 1.304052 TTGGAAAGGTGGGCCATCG 60.304 57.895 10.70 0.00 37.19 3.84
4533 15990 1.607801 GCTTGGAAAGGTGGGCCATC 61.608 60.000 10.70 10.00 46.35 3.51
4534 15991 1.610379 GCTTGGAAAGGTGGGCCAT 60.610 57.895 10.70 0.00 46.35 4.40
4535 15992 2.203625 GCTTGGAAAGGTGGGCCA 60.204 61.111 0.00 0.00 46.35 5.36
4536 15993 2.997315 GGCTTGGAAAGGTGGGCC 60.997 66.667 0.00 0.00 46.35 5.80
4537 15994 1.533994 AAGGCTTGGAAAGGTGGGC 60.534 57.895 0.00 0.00 46.35 5.36
4538 15995 0.113190 AGAAGGCTTGGAAAGGTGGG 59.887 55.000 3.46 0.00 46.35 4.61
4539 15996 1.889170 GAAGAAGGCTTGGAAAGGTGG 59.111 52.381 3.46 0.00 46.35 4.61
4540 15997 2.555757 CAGAAGAAGGCTTGGAAAGGTG 59.444 50.000 3.46 0.00 46.35 4.00
4541 15998 2.868899 CAGAAGAAGGCTTGGAAAGGT 58.131 47.619 3.46 0.00 46.35 3.50
4542 15999 1.543358 GCAGAAGAAGGCTTGGAAAGG 59.457 52.381 3.46 0.00 46.35 3.11
4544 16001 1.238439 CGCAGAAGAAGGCTTGGAAA 58.762 50.000 3.46 0.00 33.61 3.13
4545 16002 1.237285 GCGCAGAAGAAGGCTTGGAA 61.237 55.000 3.46 0.00 33.61 3.53
4546 16003 1.672356 GCGCAGAAGAAGGCTTGGA 60.672 57.895 3.46 0.00 33.61 3.53
4547 16004 2.694760 GGCGCAGAAGAAGGCTTGG 61.695 63.158 10.83 0.00 33.61 3.61
4548 16005 1.919956 CTGGCGCAGAAGAAGGCTTG 61.920 60.000 10.83 0.00 33.61 4.01
4549 16006 1.673665 CTGGCGCAGAAGAAGGCTT 60.674 57.895 10.83 0.00 36.96 4.35
4550 16007 2.046507 CTGGCGCAGAAGAAGGCT 60.047 61.111 10.83 0.00 32.44 4.58
4551 16008 3.808656 GCTGGCGCAGAAGAAGGC 61.809 66.667 10.83 0.00 32.44 4.35
4552 16009 3.494336 CGCTGGCGCAGAAGAAGG 61.494 66.667 10.83 0.00 32.44 3.46
4553 16010 3.494336 CCGCTGGCGCAGAAGAAG 61.494 66.667 10.83 1.61 38.24 2.85
4589 16046 3.732849 GAAGGCCTGGAGGGGTGG 61.733 72.222 5.69 0.00 35.18 4.61
4590 16047 2.203549 GAAGAAGGCCTGGAGGGGTG 62.204 65.000 5.69 0.00 35.18 4.61
4591 16048 1.925972 GAAGAAGGCCTGGAGGGGT 60.926 63.158 5.69 0.00 35.18 4.95
4592 16049 1.617839 AGAAGAAGGCCTGGAGGGG 60.618 63.158 5.69 0.00 35.18 4.79
4593 16050 1.204113 ACAGAAGAAGGCCTGGAGGG 61.204 60.000 5.69 0.00 34.85 4.30
4594 16051 2.381445 ACAGAAGAAGGCCTGGAGG 58.619 57.895 5.69 0.00 34.85 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.