Multiple sequence alignment - TraesCS4D01G009500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4D01G009500 chr4D 100.000 5851 0 0 1 5851 4471016 4476866 0.000000e+00 10805.0
1 TraesCS4D01G009500 chr4D 100.000 2805 0 0 6104 8908 4477119 4479923 0.000000e+00 5180.0
2 TraesCS4D01G009500 chr4D 75.356 491 81 21 7009 7471 4273478 4273000 5.450000e-47 200.0
3 TraesCS4D01G009500 chr4D 73.250 557 102 35 973 1496 4488792 4489334 9.260000e-35 159.0
4 TraesCS4D01G009500 chr4A 95.378 2683 116 7 6229 8906 598793408 598790729 0.000000e+00 4261.0
5 TraesCS4D01G009500 chr4A 92.864 2116 72 21 3773 5851 598795681 598793608 0.000000e+00 2998.0
6 TraesCS4D01G009500 chr4A 96.500 800 24 2 2675 3470 598800146 598799347 0.000000e+00 1319.0
7 TraesCS4D01G009500 chr4A 94.992 659 21 8 2016 2670 598800828 598800178 0.000000e+00 1024.0
8 TraesCS4D01G009500 chr4A 93.353 662 17 11 755 1393 598805799 598805142 0.000000e+00 953.0
9 TraesCS4D01G009500 chr4A 92.765 622 29 3 1412 2017 598801480 598800859 0.000000e+00 885.0
10 TraesCS4D01G009500 chr4A 92.698 315 23 0 3817 4131 598861480 598861166 1.050000e-123 455.0
11 TraesCS4D01G009500 chr4A 87.761 335 28 7 343 670 598806145 598805817 6.530000e-101 379.0
12 TraesCS4D01G009500 chr4A 94.681 188 10 0 3574 3761 598797801 598797614 8.750000e-75 292.0
13 TraesCS4D01G009500 chr4A 91.398 186 11 3 132 315 598806321 598806139 5.340000e-62 250.0
14 TraesCS4D01G009500 chr4A 96.667 120 3 1 6104 6223 598793587 598793469 1.960000e-46 198.0
15 TraesCS4D01G009500 chr4A 73.056 553 103 32 979 1496 598781558 598781017 4.310000e-33 154.0
16 TraesCS4D01G009500 chr4A 73.834 493 83 24 7006 7471 599629704 599630177 4.310000e-33 154.0
17 TraesCS4D01G009500 chr4A 95.604 91 4 0 3468 3558 598797953 598797863 7.210000e-31 147.0
18 TraesCS4D01G009500 chr4B 91.934 1810 136 7 6229 8030 7404203 7406010 0.000000e+00 2525.0
19 TraesCS4D01G009500 chr4B 87.363 1638 108 31 4298 5837 7402079 7403715 0.000000e+00 1786.0
20 TraesCS4D01G009500 chr4B 84.819 1436 118 42 644 2006 7398231 7399639 0.000000e+00 1352.0
21 TraesCS4D01G009500 chr4B 89.177 1081 78 10 2512 3558 7400164 7401239 0.000000e+00 1312.0
22 TraesCS4D01G009500 chr4B 89.481 694 64 5 8026 8710 7418534 7419227 0.000000e+00 869.0
23 TraesCS4D01G009500 chr4B 90.657 578 31 8 3576 4131 7401301 7401877 0.000000e+00 747.0
24 TraesCS4D01G009500 chr4B 90.256 390 27 6 210 596 7860687 7860306 4.800000e-137 499.0
25 TraesCS4D01G009500 chr4B 88.917 397 29 8 207 596 7397743 7398131 8.090000e-130 475.0
26 TraesCS4D01G009500 chr4B 90.881 318 18 5 2157 2469 7399854 7400165 4.980000e-112 416.0
27 TraesCS4D01G009500 chr4B 93.827 81 5 0 6113 6193 7404009 7404089 1.210000e-23 122.0
28 TraesCS4D01G009500 chr7B 79.395 893 152 22 2680 3554 500032238 500031360 1.280000e-167 601.0
29 TraesCS4D01G009500 chr7B 77.576 495 64 21 3584 4040 500031302 500030817 1.150000e-63 255.0
30 TraesCS4D01G009500 chr7B 86.275 153 21 0 3876 4028 458354456 458354304 5.530000e-37 167.0
31 TraesCS4D01G009500 chr7A 79.190 889 154 24 2680 3551 12696144 12697018 9.960000e-164 588.0
32 TraesCS4D01G009500 chr7A 78.279 488 70 17 3584 4040 12697079 12697561 1.890000e-71 281.0
33 TraesCS4D01G009500 chr7A 87.838 74 9 0 2592 2665 12696029 12696102 4.430000e-13 87.9
34 TraesCS4D01G009500 chr7A 92.683 41 2 1 1603 1642 675040781 675040821 3.470000e-04 58.4
35 TraesCS4D01G009500 chr2B 85.953 299 30 6 2078 2369 580010775 580010482 8.690000e-80 309.0
36 TraesCS4D01G009500 chr2B 91.525 118 9 1 2897 3014 580010030 580009914 2.570000e-35 161.0
37 TraesCS4D01G009500 chr5B 77.912 498 61 24 3584 4040 181474449 181474938 1.910000e-66 265.0
38 TraesCS4D01G009500 chr5B 75.434 346 58 19 6865 7195 43246299 43246632 9.320000e-30 143.0
39 TraesCS4D01G009500 chr1A 86.928 153 20 0 3876 4028 391671990 391672142 1.190000e-38 172.0
40 TraesCS4D01G009500 chr1A 79.839 124 11 8 4652 4774 111603840 111603730 2.670000e-10 78.7
41 TraesCS4D01G009500 chr1A 95.122 41 1 1 1603 1642 553720482 553720442 7.470000e-06 63.9
42 TraesCS4D01G009500 chr1D 86.364 154 13 5 4652 4799 108744586 108744737 2.570000e-35 161.0
43 TraesCS4D01G009500 chrUn 73.834 493 83 24 7006 7471 47348118 47348591 4.310000e-33 154.0
44 TraesCS4D01G009500 chr1B 72.777 551 101 29 982 1496 46001191 46001728 3.350000e-29 141.0
45 TraesCS4D01G009500 chr1B 72.661 545 100 30 982 1487 46060100 46060634 1.560000e-27 135.0
46 TraesCS4D01G009500 chr2D 73.487 347 57 23 6865 7189 3458115 3458448 2.050000e-16 99.0
47 TraesCS4D01G009500 chr2D 90.476 42 3 1 1602 1642 62620717 62620676 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4D01G009500 chr4D 4471016 4479923 8907 False 7992.500000 10805 100.000000 1 8908 2 chr4D.!!$F2 8907
1 TraesCS4D01G009500 chr4A 598790729 598806321 15592 True 1155.090909 4261 93.814818 132 8906 11 chr4A.!!$R3 8774
2 TraesCS4D01G009500 chr4B 7397743 7406010 8267 False 1091.875000 2525 89.696875 207 8030 8 chr4B.!!$F2 7823
3 TraesCS4D01G009500 chr4B 7418534 7419227 693 False 869.000000 869 89.481000 8026 8710 1 chr4B.!!$F1 684
4 TraesCS4D01G009500 chr7B 500030817 500032238 1421 True 428.000000 601 78.485500 2680 4040 2 chr7B.!!$R2 1360
5 TraesCS4D01G009500 chr7A 12696029 12697561 1532 False 318.966667 588 81.769000 2592 4040 3 chr7A.!!$F2 1448
6 TraesCS4D01G009500 chr2B 580009914 580010775 861 True 235.000000 309 88.739000 2078 3014 2 chr2B.!!$R1 936

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
118 119 0.107654 ACGGGAGCTGCTACAATTCC 60.108 55.000 14.92 4.45 0.00 3.01 F
1231 1331 0.095935 CTTGCAGCTGTACGTGATGC 59.904 55.000 16.64 18.01 45.70 3.91 F
1349 1449 0.253630 TTGGCACCCCTCTCCCTAAT 60.254 55.000 0.00 0.00 0.00 1.73 F
3077 7072 0.318107 CAAGCTTGAGGGTTTGCACG 60.318 55.000 22.31 0.00 32.86 5.34 F
3512 8917 1.343465 TCCTCTCAACACGGAACTTCC 59.657 52.381 0.00 0.00 0.00 3.46 F
4433 11901 1.067821 GGGAGACTTACAGCGAGATGG 59.932 57.143 0.00 0.00 0.00 3.51 F
4550 12025 0.109086 CGATCAGCGACCAGACACTT 60.109 55.000 0.00 0.00 44.57 3.16 F
5295 12807 0.796870 TGTCATTCGCGTCGCTGTAG 60.797 55.000 16.36 0.00 0.00 2.74 F
6564 14227 1.019278 CAGGGTGTGTACGTCATGGC 61.019 60.000 0.00 0.00 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1519 5268 0.105913 AAAAGGGCGGGGACAAAAGA 60.106 50.000 0.00 0.00 0.00 2.52 R
2108 5929 0.802494 GGGAACTTATGGTGTGCACG 59.198 55.000 13.13 0.00 0.00 5.34 R
3262 7257 0.657312 TCGCTGTTTGTTGCTGACAG 59.343 50.000 0.00 0.00 42.75 3.51 R
4424 11892 0.179702 ACATGATGCACCATCTCGCT 59.820 50.000 0.00 0.00 41.06 4.93 R
4550 12025 0.181114 GATGTGGGCTGCCTGACATA 59.819 55.000 26.30 13.84 30.65 2.29 R
5557 13104 2.682856 CCAACACTGGTATATGCCACAC 59.317 50.000 8.67 0.00 38.00 3.82 R
6387 14050 4.040755 ACACTCCTATTGGCAGGAATACT 58.959 43.478 0.00 0.00 44.18 2.12 R
7163 14830 0.100682 CCGAGATCTACCACCACGTG 59.899 60.000 9.08 9.08 0.00 4.49 R
7937 15610 0.552848 CCCACTGTGCCAGGGATAAT 59.447 55.000 1.29 0.00 45.80 1.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.747266 GGAGATGAGGCATGCTGC 58.253 61.111 18.92 10.43 44.08 5.25
18 19 2.252346 GGAGATGAGGCATGCTGCG 61.252 63.158 18.92 0.00 46.21 5.18
19 20 2.203167 AGATGAGGCATGCTGCGG 60.203 61.111 18.92 0.00 46.21 5.69
20 21 2.515523 GATGAGGCATGCTGCGGT 60.516 61.111 18.92 0.00 46.21 5.68
21 22 2.827190 ATGAGGCATGCTGCGGTG 60.827 61.111 18.92 0.00 46.21 4.94
22 23 3.633609 ATGAGGCATGCTGCGGTGT 62.634 57.895 18.92 0.00 46.21 4.16
23 24 3.058160 GAGGCATGCTGCGGTGTT 61.058 61.111 18.92 0.00 46.21 3.32
24 25 3.332493 GAGGCATGCTGCGGTGTTG 62.332 63.158 18.92 0.00 46.21 3.33
25 26 4.424566 GGCATGCTGCGGTGTTGG 62.425 66.667 18.92 0.00 46.21 3.77
27 28 3.367743 CATGCTGCGGTGTTGGCT 61.368 61.111 0.00 0.00 0.00 4.75
28 29 2.598394 ATGCTGCGGTGTTGGCTT 60.598 55.556 0.00 0.00 0.00 4.35
29 30 2.629656 ATGCTGCGGTGTTGGCTTC 61.630 57.895 0.00 0.00 0.00 3.86
30 31 3.286751 GCTGCGGTGTTGGCTTCA 61.287 61.111 0.00 0.00 0.00 3.02
31 32 2.844451 GCTGCGGTGTTGGCTTCAA 61.844 57.895 0.00 0.00 0.00 2.69
32 33 1.283793 CTGCGGTGTTGGCTTCAAG 59.716 57.895 0.00 0.00 0.00 3.02
33 34 2.133742 CTGCGGTGTTGGCTTCAAGG 62.134 60.000 0.00 0.00 0.00 3.61
34 35 1.896660 GCGGTGTTGGCTTCAAGGA 60.897 57.895 0.00 0.00 0.00 3.36
35 36 1.949257 CGGTGTTGGCTTCAAGGAC 59.051 57.895 0.00 0.00 0.00 3.85
36 37 1.841663 CGGTGTTGGCTTCAAGGACG 61.842 60.000 0.00 0.00 0.00 4.79
37 38 1.282875 GTGTTGGCTTCAAGGACGC 59.717 57.895 0.00 0.00 0.00 5.19
38 39 1.896660 TGTTGGCTTCAAGGACGCC 60.897 57.895 6.78 6.78 45.52 5.68
41 42 3.423154 GGCTTCAAGGACGCCGTG 61.423 66.667 0.00 5.68 37.24 4.94
42 43 3.423154 GCTTCAAGGACGCCGTGG 61.423 66.667 0.00 0.00 33.92 4.94
43 44 3.423154 CTTCAAGGACGCCGTGGC 61.423 66.667 0.00 0.00 33.92 5.01
62 63 3.053291 GCGGCCATGGTGACGAAA 61.053 61.111 23.42 0.00 0.00 3.46
63 64 2.622011 GCGGCCATGGTGACGAAAA 61.622 57.895 23.42 0.00 0.00 2.29
64 65 1.209127 CGGCCATGGTGACGAAAAC 59.791 57.895 14.67 0.00 0.00 2.43
65 66 1.209127 GGCCATGGTGACGAAAACG 59.791 57.895 14.67 0.00 0.00 3.60
66 67 1.231958 GGCCATGGTGACGAAAACGA 61.232 55.000 14.67 0.00 0.00 3.85
67 68 0.110373 GCCATGGTGACGAAAACGAC 60.110 55.000 14.67 0.00 0.00 4.34
68 69 0.162933 CCATGGTGACGAAAACGACG 59.837 55.000 2.57 0.00 0.00 5.12
69 70 0.162933 CATGGTGACGAAAACGACGG 59.837 55.000 0.00 0.00 34.93 4.79
70 71 0.947180 ATGGTGACGAAAACGACGGG 60.947 55.000 0.00 0.00 34.93 5.28
71 72 1.300080 GGTGACGAAAACGACGGGA 60.300 57.895 0.00 0.00 34.93 5.14
72 73 1.280206 GGTGACGAAAACGACGGGAG 61.280 60.000 0.00 0.00 34.93 4.30
73 74 1.662446 TGACGAAAACGACGGGAGC 60.662 57.895 0.00 0.00 34.93 4.70
74 75 1.372623 GACGAAAACGACGGGAGCT 60.373 57.895 0.00 0.00 34.93 4.09
75 76 1.615107 GACGAAAACGACGGGAGCTG 61.615 60.000 0.00 0.00 34.93 4.24
76 77 2.861006 GAAAACGACGGGAGCTGC 59.139 61.111 0.00 0.00 0.00 5.25
77 78 1.959226 GAAAACGACGGGAGCTGCA 60.959 57.895 7.79 0.00 0.00 4.41
78 79 1.503818 GAAAACGACGGGAGCTGCAA 61.504 55.000 7.79 0.00 0.00 4.08
79 80 1.782028 AAAACGACGGGAGCTGCAAC 61.782 55.000 7.79 0.00 0.00 4.17
80 81 2.933878 AAACGACGGGAGCTGCAACA 62.934 55.000 7.79 0.00 0.00 3.33
81 82 2.664851 CGACGGGAGCTGCAACAA 60.665 61.111 7.79 0.00 0.00 2.83
82 83 2.946762 GACGGGAGCTGCAACAAC 59.053 61.111 7.79 0.00 0.00 3.32
83 84 1.598130 GACGGGAGCTGCAACAACT 60.598 57.895 7.79 0.00 0.00 3.16
84 85 1.569479 GACGGGAGCTGCAACAACTC 61.569 60.000 7.79 0.00 0.00 3.01
85 86 1.302033 CGGGAGCTGCAACAACTCT 60.302 57.895 7.79 0.00 28.66 3.24
86 87 1.572085 CGGGAGCTGCAACAACTCTG 61.572 60.000 7.79 0.00 28.66 3.35
87 88 0.250467 GGGAGCTGCAACAACTCTGA 60.250 55.000 7.79 0.00 28.66 3.27
88 89 1.612726 GGGAGCTGCAACAACTCTGAT 60.613 52.381 7.79 0.00 28.66 2.90
89 90 1.467734 GGAGCTGCAACAACTCTGATG 59.532 52.381 0.00 0.00 28.66 3.07
90 91 2.420642 GAGCTGCAACAACTCTGATGA 58.579 47.619 1.02 0.00 0.00 2.92
91 92 2.149578 AGCTGCAACAACTCTGATGAC 58.850 47.619 1.02 0.00 0.00 3.06
92 93 1.136141 GCTGCAACAACTCTGATGACG 60.136 52.381 0.00 0.00 0.00 4.35
93 94 2.407090 CTGCAACAACTCTGATGACGA 58.593 47.619 0.00 0.00 0.00 4.20
94 95 2.802247 CTGCAACAACTCTGATGACGAA 59.198 45.455 0.00 0.00 0.00 3.85
95 96 3.202097 TGCAACAACTCTGATGACGAAA 58.798 40.909 0.00 0.00 0.00 3.46
96 97 3.625313 TGCAACAACTCTGATGACGAAAA 59.375 39.130 0.00 0.00 0.00 2.29
97 98 3.968724 GCAACAACTCTGATGACGAAAAC 59.031 43.478 0.00 0.00 0.00 2.43
98 99 4.203828 CAACAACTCTGATGACGAAAACG 58.796 43.478 0.00 0.00 0.00 3.60
99 100 3.713288 ACAACTCTGATGACGAAAACGA 58.287 40.909 0.00 0.00 0.00 3.85
100 101 3.489785 ACAACTCTGATGACGAAAACGAC 59.510 43.478 0.00 0.00 0.00 4.34
101 102 2.316792 ACTCTGATGACGAAAACGACG 58.683 47.619 0.00 0.00 0.00 5.12
102 103 1.649171 CTCTGATGACGAAAACGACGG 59.351 52.381 0.00 0.00 34.93 4.79
103 104 0.713883 CTGATGACGAAAACGACGGG 59.286 55.000 0.00 0.00 34.93 5.28
104 105 0.314618 TGATGACGAAAACGACGGGA 59.685 50.000 0.00 0.00 34.93 5.14
105 106 0.989890 GATGACGAAAACGACGGGAG 59.010 55.000 0.00 0.00 34.93 4.30
106 107 1.012486 ATGACGAAAACGACGGGAGC 61.012 55.000 0.00 0.00 34.93 4.70
107 108 1.372623 GACGAAAACGACGGGAGCT 60.373 57.895 0.00 0.00 34.93 4.09
108 109 1.615107 GACGAAAACGACGGGAGCTG 61.615 60.000 0.00 0.00 34.93 4.24
109 110 2.861006 GAAAACGACGGGAGCTGC 59.139 61.111 0.00 0.00 0.00 5.25
110 111 1.668151 GAAAACGACGGGAGCTGCT 60.668 57.895 0.00 0.00 0.00 4.24
111 112 0.389426 GAAAACGACGGGAGCTGCTA 60.389 55.000 0.15 0.00 0.00 3.49
112 113 0.669625 AAAACGACGGGAGCTGCTAC 60.670 55.000 2.38 2.38 0.00 3.58
113 114 1.812686 AAACGACGGGAGCTGCTACA 61.813 55.000 14.92 0.00 0.00 2.74
114 115 1.812686 AACGACGGGAGCTGCTACAA 61.813 55.000 14.92 0.00 0.00 2.41
115 116 1.141881 CGACGGGAGCTGCTACAAT 59.858 57.895 14.92 0.00 0.00 2.71
116 117 0.460284 CGACGGGAGCTGCTACAATT 60.460 55.000 14.92 0.00 0.00 2.32
117 118 1.291132 GACGGGAGCTGCTACAATTC 58.709 55.000 14.92 2.55 0.00 2.17
118 119 0.107654 ACGGGAGCTGCTACAATTCC 60.108 55.000 14.92 4.45 0.00 3.01
119 120 0.107703 CGGGAGCTGCTACAATTCCA 60.108 55.000 14.92 0.00 0.00 3.53
120 121 1.678728 CGGGAGCTGCTACAATTCCAA 60.679 52.381 14.92 0.00 0.00 3.53
121 122 1.745653 GGGAGCTGCTACAATTCCAAC 59.254 52.381 14.92 0.00 0.00 3.77
122 123 1.398390 GGAGCTGCTACAATTCCAACG 59.602 52.381 7.09 0.00 0.00 4.10
123 124 2.346803 GAGCTGCTACAATTCCAACGA 58.653 47.619 0.15 0.00 0.00 3.85
124 125 2.939103 GAGCTGCTACAATTCCAACGAT 59.061 45.455 0.15 0.00 0.00 3.73
125 126 2.679837 AGCTGCTACAATTCCAACGATG 59.320 45.455 0.00 0.00 0.00 3.84
144 145 0.890996 GGCAAGCCGAGATTATGGGG 60.891 60.000 0.00 0.00 0.00 4.96
146 147 1.271597 GCAAGCCGAGATTATGGGGAT 60.272 52.381 0.00 0.00 0.00 3.85
161 162 9.492730 GATTATGGGGATATTGTTGGGAATAAT 57.507 33.333 0.00 0.00 0.00 1.28
162 163 9.857345 ATTATGGGGATATTGTTGGGAATAATT 57.143 29.630 0.00 0.00 0.00 1.40
175 176 4.405358 TGGGAATAATTTTGTCCTGGATGC 59.595 41.667 0.00 0.00 0.00 3.91
197 198 3.698463 CGGGTGTGTTCGTGCGTC 61.698 66.667 0.00 0.00 0.00 5.19
315 317 4.589700 CCGTGCGTGTGTGTGTGC 62.590 66.667 0.00 0.00 0.00 4.57
316 318 3.858989 CGTGCGTGTGTGTGTGCA 61.859 61.111 0.00 0.00 34.44 4.57
322 330 0.316937 CGTGTGTGTGTGCATGGTTC 60.317 55.000 0.00 0.00 0.00 3.62
388 396 4.697352 GGCTGTAATCAGTTTGTGAGATGT 59.303 41.667 0.00 0.00 43.05 3.06
445 454 2.203001 CCGTACATGCGGCATGGA 60.203 61.111 37.51 31.52 45.16 3.41
500 509 2.962421 CTCCATCTTCTACCTCTGTCCC 59.038 54.545 0.00 0.00 0.00 4.46
501 510 2.587777 TCCATCTTCTACCTCTGTCCCT 59.412 50.000 0.00 0.00 0.00 4.20
504 513 3.374042 TCTTCTACCTCTGTCCCTGAG 57.626 52.381 0.00 0.00 0.00 3.35
585 594 3.403936 GGCACGGATTAAGATGGCT 57.596 52.632 0.00 0.00 34.93 4.75
591 600 2.223829 ACGGATTAAGATGGCTGACGAG 60.224 50.000 0.00 0.00 0.00 4.18
641 672 3.550561 CGCGCATTTGACAAAGTTTAGA 58.449 40.909 8.75 0.00 0.00 2.10
682 743 1.718757 GGGCTGCATCCGAACACATC 61.719 60.000 0.50 0.00 0.00 3.06
707 768 1.522668 TTTCGTGGAATGGACAGCTG 58.477 50.000 13.48 13.48 0.00 4.24
730 791 1.001268 CCCATAGACAGACCATCGTCG 60.001 57.143 0.00 0.00 44.28 5.12
735 796 0.460311 GACAGACCATCGTCGGGATT 59.540 55.000 0.00 0.00 44.28 3.01
947 1022 3.266964 GCCACAGCAGCGAATTCA 58.733 55.556 6.22 0.00 39.53 2.57
1066 1146 2.867855 AAGTTCGCCGAGGTGAGCA 61.868 57.895 19.02 0.00 38.12 4.26
1109 1195 3.912614 CACCCCGTGTGTTTGTGT 58.087 55.556 0.00 0.00 40.26 3.72
1138 1228 0.179215 GCTGAGCATCACCGTTTTCG 60.179 55.000 0.00 0.00 42.56 3.46
1231 1331 0.095935 CTTGCAGCTGTACGTGATGC 59.904 55.000 16.64 18.01 45.70 3.91
1331 1431 0.517316 GAAATCGCCGTCTTGCTGTT 59.483 50.000 0.00 0.00 0.00 3.16
1347 1447 1.615424 GTTGGCACCCCTCTCCCTA 60.615 63.158 0.00 0.00 0.00 3.53
1348 1448 1.162329 TTGGCACCCCTCTCCCTAA 59.838 57.895 0.00 0.00 0.00 2.69
1349 1449 0.253630 TTGGCACCCCTCTCCCTAAT 60.254 55.000 0.00 0.00 0.00 1.73
1350 1450 0.694444 TGGCACCCCTCTCCCTAATC 60.694 60.000 0.00 0.00 0.00 1.75
1353 1453 1.428869 CACCCCTCTCCCTAATCTGG 58.571 60.000 0.00 0.00 0.00 3.86
1354 1454 1.027815 ACCCCTCTCCCTAATCTGGT 58.972 55.000 0.00 0.00 0.00 4.00
1355 1455 1.062044 ACCCCTCTCCCTAATCTGGTC 60.062 57.143 0.00 0.00 0.00 4.02
1356 1456 1.221781 CCCCTCTCCCTAATCTGGTCT 59.778 57.143 0.00 0.00 0.00 3.85
1357 1457 2.604139 CCCTCTCCCTAATCTGGTCTC 58.396 57.143 0.00 0.00 0.00 3.36
1358 1458 2.178984 CCCTCTCCCTAATCTGGTCTCT 59.821 54.545 0.00 0.00 0.00 3.10
1410 1510 4.250116 TCTTGTCTGTTTCTCTGCTCTC 57.750 45.455 0.00 0.00 0.00 3.20
1509 5252 1.662629 GCAGGTGATGATGACGACAAG 59.337 52.381 0.00 0.00 0.00 3.16
1519 5268 1.375326 GACGACAAGCCCCCTTTCT 59.625 57.895 0.00 0.00 0.00 2.52
1520 5269 0.673956 GACGACAAGCCCCCTTTCTC 60.674 60.000 0.00 0.00 0.00 2.87
1601 5353 1.885887 CGGATGTGTTTGTCATGGGTT 59.114 47.619 0.00 0.00 0.00 4.11
1630 5385 2.212110 ATGGTACGGGGATACGGGC 61.212 63.158 0.00 0.00 38.39 6.13
1666 5421 8.303876 GGCATTTTCTAAAAATGGACTTACAGA 58.696 33.333 20.66 0.00 37.92 3.41
1840 5613 2.950309 GCTCATGATCAAGTGCCAGATT 59.050 45.455 12.68 0.00 0.00 2.40
1841 5614 3.243101 GCTCATGATCAAGTGCCAGATTG 60.243 47.826 12.68 0.00 0.00 2.67
1980 5769 4.002906 ACTAAATCCACAGCTCGTTCAA 57.997 40.909 0.00 0.00 0.00 2.69
1999 5788 8.770828 TCGTTCAAGAACCAAACTATTTCTTAG 58.229 33.333 7.32 0.00 37.46 2.18
2004 5793 7.674471 AGAACCAAACTATTTCTTAGAGTGC 57.326 36.000 0.00 0.00 0.00 4.40
2039 5860 1.077212 ATGCTGGCTGCCCAAGTAG 60.077 57.895 17.53 7.44 41.58 2.57
2049 5870 2.681848 CTGCCCAAGTAGCTTCTCAATG 59.318 50.000 0.00 0.00 0.00 2.82
2060 5881 4.459330 AGCTTCTCAATGCTAAATCCTCC 58.541 43.478 0.00 0.00 37.81 4.30
2108 5929 5.883115 AGGCTAAATCTTTTAACTCTGGAGC 59.117 40.000 0.00 0.00 0.00 4.70
2213 6126 8.450578 TTCATAAAAGAGAGAAGTCAGCAAAA 57.549 30.769 0.00 0.00 0.00 2.44
2214 6127 8.450578 TCATAAAAGAGAGAAGTCAGCAAAAA 57.549 30.769 0.00 0.00 0.00 1.94
2406 6328 1.809684 GTGTAACTCTTGGTCCAGCC 58.190 55.000 0.00 0.00 37.90 4.85
2485 6411 7.504924 TGAATGAAACAGAAGGACGTATTTT 57.495 32.000 0.00 0.00 0.00 1.82
2672 6633 3.880608 TGGTGTCCCATATCCCATATCA 58.119 45.455 0.00 0.00 35.17 2.15
2673 6634 4.447474 TGGTGTCCCATATCCCATATCAT 58.553 43.478 0.00 0.00 35.17 2.45
2699 6687 3.253432 GTCCTTATCATCGGGAAAATGGC 59.747 47.826 0.00 0.00 0.00 4.40
2872 6867 7.002250 TGATCCTCTTCAATATGATGAGACC 57.998 40.000 19.21 11.00 45.91 3.85
3077 7072 0.318107 CAAGCTTGAGGGTTTGCACG 60.318 55.000 22.31 0.00 32.86 5.34
3107 7102 9.793252 CATGGAGTCCAGAAAATATTTTTGTAG 57.207 33.333 18.69 5.19 36.75 2.74
3180 7175 4.394729 GACAACCTGGACCACATTCTTTA 58.605 43.478 0.00 0.00 0.00 1.85
3503 8908 1.736681 GCTCAAGCATCCTCTCAACAC 59.263 52.381 0.00 0.00 41.59 3.32
3512 8917 1.343465 TCCTCTCAACACGGAACTTCC 59.657 52.381 0.00 0.00 0.00 3.46
3558 8963 6.852664 TCAATGCATCATATGATTGATCTGC 58.147 36.000 15.74 16.09 34.09 4.26
3560 8965 5.880054 TGCATCATATGATTGATCTGCAG 57.120 39.130 20.22 7.63 36.95 4.41
3562 8967 6.180472 TGCATCATATGATTGATCTGCAGAT 58.820 36.000 29.09 29.09 36.95 2.90
3564 8969 7.993183 TGCATCATATGATTGATCTGCAGATAT 59.007 33.333 28.78 19.43 36.95 1.63
3565 8970 8.286097 GCATCATATGATTGATCTGCAGATATG 58.714 37.037 28.78 23.71 34.09 1.78
3566 8971 9.331282 CATCATATGATTGATCTGCAGATATGT 57.669 33.333 28.78 16.75 34.09 2.29
3567 8972 8.718102 TCATATGATTGATCTGCAGATATGTG 57.282 34.615 28.78 23.10 34.37 3.21
3568 8973 7.769044 TCATATGATTGATCTGCAGATATGTGG 59.231 37.037 28.78 12.22 34.37 4.17
3571 8976 3.758755 TGATCTGCAGATATGTGGTCC 57.241 47.619 28.78 14.15 34.37 4.46
3572 8977 2.369860 TGATCTGCAGATATGTGGTCCC 59.630 50.000 28.78 13.46 34.37 4.46
3605 9065 3.070878 GGGTTTCTTGCCAAATTGAAGGA 59.929 43.478 0.00 0.00 0.00 3.36
3618 9078 7.545615 GCCAAATTGAAGGAAAGTGGTATAAAG 59.454 37.037 0.00 0.00 0.00 1.85
3768 11144 3.924918 TGTGTCTCTCTTCAGCAGTAC 57.075 47.619 0.00 0.00 0.00 2.73
3770 11146 3.004839 TGTGTCTCTCTTCAGCAGTACAC 59.995 47.826 0.00 0.00 37.18 2.90
3771 11147 3.254657 GTGTCTCTCTTCAGCAGTACACT 59.745 47.826 0.00 0.00 34.58 3.55
3776 11171 5.303078 TCTCTCTTCAGCAGTACACTCTTTT 59.697 40.000 0.00 0.00 0.00 2.27
3984 11385 5.163281 AGATGTGCTCTCACTCTTGAATT 57.837 39.130 0.00 0.00 43.49 2.17
4044 11446 6.535161 AAATCTTTCATCCCCTCCATATCA 57.465 37.500 0.00 0.00 0.00 2.15
4173 11641 8.977505 CAAAAACTTTAATCCAGTACATGTTGG 58.022 33.333 2.30 6.99 35.74 3.77
4200 11668 5.598416 TGACGGATAGTTTGATCAGACAT 57.402 39.130 17.80 9.44 0.00 3.06
4257 11725 7.169645 GTCTAGCAGAAGATGATGTCAAGATTC 59.830 40.741 0.00 0.00 0.00 2.52
4268 11736 8.723942 ATGATGTCAAGATTCCTAAGTTGTAC 57.276 34.615 0.00 0.00 0.00 2.90
4269 11737 7.676004 TGATGTCAAGATTCCTAAGTTGTACA 58.324 34.615 0.00 0.00 0.00 2.90
4270 11738 7.602644 TGATGTCAAGATTCCTAAGTTGTACAC 59.397 37.037 0.00 0.00 0.00 2.90
4274 11742 6.042781 TCAAGATTCCTAAGTTGTACACCACT 59.957 38.462 0.00 0.00 0.00 4.00
4294 11762 6.668541 CACTAGATGAAACAGTGGTATTGG 57.331 41.667 0.00 0.00 36.79 3.16
4295 11763 6.173339 CACTAGATGAAACAGTGGTATTGGT 58.827 40.000 0.00 0.00 36.79 3.67
4296 11764 7.327975 CACTAGATGAAACAGTGGTATTGGTA 58.672 38.462 0.00 0.00 36.79 3.25
4370 11838 2.626582 CTAGCCTAGCAGCAATGGC 58.373 57.895 13.46 13.46 45.21 4.40
4424 11892 2.992847 TGGAGACAGGGAGACTTACA 57.007 50.000 0.00 0.00 35.01 2.41
4433 11901 1.067821 GGGAGACTTACAGCGAGATGG 59.932 57.143 0.00 0.00 0.00 3.51
4445 11913 1.944032 CGAGATGGTGCATCATGTCA 58.056 50.000 30.04 6.60 42.72 3.58
4550 12025 0.109086 CGATCAGCGACCAGACACTT 60.109 55.000 0.00 0.00 44.57 3.16
4553 12028 2.654749 TCAGCGACCAGACACTTATG 57.345 50.000 0.00 0.00 0.00 1.90
4570 12045 2.821366 GTCAGGCAGCCCACATCG 60.821 66.667 8.22 0.00 0.00 3.84
4637 12112 4.042934 GCCCCATACTATCCCTGTTGTATT 59.957 45.833 0.00 0.00 0.00 1.89
4644 12119 5.036916 ACTATCCCTGTTGTATTCCCTTCA 58.963 41.667 0.00 0.00 0.00 3.02
4804 12285 1.595311 TCCCTGCAACATAGATGGGT 58.405 50.000 3.55 0.00 36.23 4.51
5099 12581 5.310451 GGGATAGTTGTGTTTCCAGTAACA 58.690 41.667 0.00 0.00 35.75 2.41
5105 12587 6.795399 AGTTGTGTTTCCAGTAACAGAATTG 58.205 36.000 3.67 0.00 41.44 2.32
5120 12602 1.947456 GAATTGTCGGTATTCCTGCCC 59.053 52.381 0.00 0.00 0.00 5.36
5233 12745 6.971184 TGTTCTTTCTATTCGAATACTCGGAC 59.029 38.462 13.85 8.19 45.49 4.79
5295 12807 0.796870 TGTCATTCGCGTCGCTGTAG 60.797 55.000 16.36 0.00 0.00 2.74
5508 13037 8.102800 TGAGAATAGTATTATGGCATTGCAAG 57.897 34.615 4.78 0.00 0.00 4.01
5509 13038 7.938490 TGAGAATAGTATTATGGCATTGCAAGA 59.062 33.333 4.78 0.00 0.00 3.02
5557 13104 6.985188 TTCTAATTTTCCGATCTTCCACTG 57.015 37.500 0.00 0.00 0.00 3.66
5650 13197 1.264295 ACCGAAGAAGGGTCAGTACC 58.736 55.000 0.00 0.00 45.97 3.34
5722 13289 3.449918 TCTCTCTCTCTCTCTGGTCTCA 58.550 50.000 0.00 0.00 0.00 3.27
6204 13795 2.312348 GTTTTGTTTGCCGTGTATCCG 58.688 47.619 0.00 0.00 0.00 4.18
6223 13814 7.820386 TGTATCCGTAGTTGTGTTTCATGTAAT 59.180 33.333 0.00 0.00 0.00 1.89
6225 13816 5.086058 CCGTAGTTGTGTTTCATGTAATGC 58.914 41.667 0.00 0.00 46.21 3.56
6226 13817 5.106712 CCGTAGTTGTGTTTCATGTAATGCT 60.107 40.000 0.00 0.00 46.21 3.79
6349 14012 4.090642 GCTGTCATATGCGCATAAGTAGAC 59.909 45.833 32.02 30.17 0.00 2.59
6387 14050 6.497785 TGTGTTTTCTTAACGGAACTTTCA 57.502 33.333 0.00 0.00 0.00 2.69
6409 14072 4.040755 AGTATTCCTGCCAATAGGAGTGT 58.959 43.478 0.00 0.00 46.94 3.55
6432 14095 6.017109 TGTTGTAGCTCATCAAGGAAAACTTC 60.017 38.462 0.00 0.00 37.29 3.01
6505 14168 5.185828 AGCCAATGTTAATTCCTGGTTTCTC 59.814 40.000 0.00 0.00 0.00 2.87
6518 14181 3.295093 TGGTTTCTCCACTGCATTCAAA 58.705 40.909 0.00 0.00 41.93 2.69
6522 14185 5.009610 GGTTTCTCCACTGCATTCAAAGTTA 59.990 40.000 0.00 0.00 35.97 2.24
6564 14227 1.019278 CAGGGTGTGTACGTCATGGC 61.019 60.000 0.00 0.00 0.00 4.40
6570 14233 1.024046 GTGTACGTCATGGCCATGCA 61.024 55.000 36.47 25.88 38.65 3.96
6595 14259 3.431856 TGTATCATTCGTGCTGTCGTAC 58.568 45.455 0.00 0.00 0.00 3.67
6658 14322 5.458779 GCAAGGGAATTAACAATATTCGTGC 59.541 40.000 0.00 0.00 33.73 5.34
6732 14399 8.311650 ACTATTTATTCGCTATCACATGGAAC 57.688 34.615 0.00 0.00 0.00 3.62
6853 14520 6.749139 AGTATGCTTATGTGTATCGACATGT 58.251 36.000 0.00 0.00 38.04 3.21
6903 14570 7.773224 TCAATTTCTAATTTCCCGATCTTGCTA 59.227 33.333 0.00 0.00 0.00 3.49
6982 14649 4.457603 TCCGTCGGTTCAATCATTCAAAAT 59.542 37.500 11.88 0.00 0.00 1.82
7000 14667 8.950007 TTCAAAATCCAAAGAAGGGTTAGTAT 57.050 30.769 0.00 0.00 29.99 2.12
7001 14668 8.348285 TCAAAATCCAAAGAAGGGTTAGTATG 57.652 34.615 0.00 0.00 29.99 2.39
7004 14671 5.249780 TCCAAAGAAGGGTTAGTATGCAA 57.750 39.130 0.00 0.00 0.00 4.08
7127 14794 7.768120 GCTCATACCAATCTAATATTCCCAGAG 59.232 40.741 0.00 0.00 0.00 3.35
7163 14830 5.448360 GCTAGTCTTCATTTCATCTGCAACC 60.448 44.000 0.00 0.00 0.00 3.77
7272 14939 3.726607 CATGACTAAGTCTGAGATGGCC 58.273 50.000 0.00 0.00 33.15 5.36
7465 15133 3.081804 GTCCCTTGTGTCCCTATGTTTG 58.918 50.000 0.00 0.00 0.00 2.93
7633 15302 3.997021 AGCACTTAATTTGACGTCTCTGG 59.003 43.478 17.92 3.36 0.00 3.86
7637 15306 6.363473 CACTTAATTTGACGTCTCTGGAAAC 58.637 40.000 17.92 0.00 0.00 2.78
7996 15669 2.919666 ATAGGCAATGTTCAACGTGC 57.080 45.000 7.36 7.36 32.81 5.34
8019 15692 2.202236 GAGCTTCAGTGGGGGCATCA 62.202 60.000 0.00 0.00 0.00 3.07
8084 15758 3.305720 ACCTCCTGTGACAGAACTTGTA 58.694 45.455 15.33 0.00 41.05 2.41
8092 15766 5.348986 TGTGACAGAACTTGTAGTCTTGTC 58.651 41.667 12.79 12.79 41.05 3.18
8114 15788 9.981114 TTGTCTGTGTCAGTTATATATACATGG 57.019 33.333 0.00 0.00 32.61 3.66
8212 15892 7.575414 TGTTTGTGGCTCTTTTACATTCTTA 57.425 32.000 0.00 0.00 0.00 2.10
8232 15912 2.200899 ACAAAATGTTGCTGCCGAAAC 58.799 42.857 0.00 0.00 38.39 2.78
8268 15948 7.893302 TCCCTAATCTTATTTTGGTGTTGATGT 59.107 33.333 0.00 0.00 0.00 3.06
8318 15998 3.742433 ATCAAGCTTATCTCGGGACAG 57.258 47.619 0.00 0.00 0.00 3.51
8381 16061 1.892209 TCAAAAAGGAGAAGGCGTCC 58.108 50.000 0.00 0.00 0.00 4.79
8388 16068 0.249363 GGAGAAGGCGTCCGTTATCC 60.249 60.000 0.00 0.00 39.23 2.59
8482 16163 3.449737 AGAATGTTGGGGATCATGCAAAG 59.550 43.478 0.00 0.00 0.00 2.77
8516 16197 0.249447 CTCGCCACTGTGTCAAGTCA 60.249 55.000 7.08 0.00 0.00 3.41
8571 16252 0.644380 TGATGGGATCCTCAGGTCCT 59.356 55.000 12.58 0.00 34.84 3.85
8584 16265 0.618968 AGGTCCTGGAGTCATGGGAC 60.619 60.000 15.61 15.61 45.18 4.46
8669 16351 2.362889 CCAATGTCCCCTGCCCAC 60.363 66.667 0.00 0.00 0.00 4.61
8671 16353 1.570857 CCAATGTCCCCTGCCCACTA 61.571 60.000 0.00 0.00 0.00 2.74
8710 16392 1.852157 GCATCAGGTCCTTGGGGTCA 61.852 60.000 0.00 0.00 0.00 4.02
8749 16431 0.625316 AGTGGGCATGCAACCATCTA 59.375 50.000 21.36 0.00 39.30 1.98
8793 16476 1.632018 TTCCCCAGGTCCTATTGCGG 61.632 60.000 0.00 0.00 0.00 5.69
8811 16494 2.592308 GATGTGGGGGTCTGCCTC 59.408 66.667 0.00 0.00 34.45 4.70
8820 16503 1.594310 GGTCTGCCTCAGGTGAGTC 59.406 63.158 6.25 0.00 40.48 3.36
8848 16531 1.420430 CGGGCTATTAAGTCCTGGGA 58.580 55.000 0.00 0.00 46.13 4.37
8852 16535 2.409570 GCTATTAAGTCCTGGGACCCT 58.590 52.381 13.00 6.67 45.59 4.34
8882 16565 1.067295 TGAGGCAATGGTCTGGTCTT 58.933 50.000 0.00 0.00 0.00 3.01
8892 16575 1.689892 GGTCTGGTCTTCCTAGGGAGG 60.690 61.905 17.66 0.75 45.35 4.30
8906 16589 2.823932 AGGGAGGAGGGGGTATAAGTA 58.176 52.381 0.00 0.00 0.00 2.24
8907 16590 2.453991 AGGGAGGAGGGGGTATAAGTAC 59.546 54.545 0.00 0.00 0.00 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 2.807631 GAAGCCAACACCGCAGCATG 62.808 60.000 0.00 0.00 40.87 4.06
11 12 2.598394 AAGCCAACACCGCAGCAT 60.598 55.556 0.00 0.00 0.00 3.79
12 13 3.286751 GAAGCCAACACCGCAGCA 61.287 61.111 0.00 0.00 0.00 4.41
13 14 2.737932 CTTGAAGCCAACACCGCAGC 62.738 60.000 0.00 0.00 0.00 5.25
14 15 1.283793 CTTGAAGCCAACACCGCAG 59.716 57.895 0.00 0.00 0.00 5.18
15 16 2.192861 CCTTGAAGCCAACACCGCA 61.193 57.895 0.00 0.00 0.00 5.69
16 17 1.896660 TCCTTGAAGCCAACACCGC 60.897 57.895 0.00 0.00 0.00 5.68
17 18 1.841663 CGTCCTTGAAGCCAACACCG 61.842 60.000 0.00 0.00 0.00 4.94
18 19 1.949257 CGTCCTTGAAGCCAACACC 59.051 57.895 0.00 0.00 0.00 4.16
19 20 1.282875 GCGTCCTTGAAGCCAACAC 59.717 57.895 0.00 0.00 31.28 3.32
20 21 3.744559 GCGTCCTTGAAGCCAACA 58.255 55.556 0.00 0.00 31.28 3.33
25 26 3.423154 CCACGGCGTCCTTGAAGC 61.423 66.667 10.85 0.00 36.39 3.86
26 27 3.423154 GCCACGGCGTCCTTGAAG 61.423 66.667 10.85 0.00 0.00 3.02
45 46 2.622011 TTTTCGTCACCATGGCCGC 61.622 57.895 13.04 0.32 0.00 6.53
46 47 1.209127 GTTTTCGTCACCATGGCCG 59.791 57.895 13.04 12.19 0.00 6.13
47 48 1.209127 CGTTTTCGTCACCATGGCC 59.791 57.895 13.04 0.00 38.65 5.36
48 49 0.110373 GTCGTTTTCGTCACCATGGC 60.110 55.000 13.04 0.00 44.46 4.40
49 50 0.162933 CGTCGTTTTCGTCACCATGG 59.837 55.000 11.19 11.19 44.46 3.66
50 51 0.162933 CCGTCGTTTTCGTCACCATG 59.837 55.000 0.00 0.00 44.46 3.66
51 52 0.947180 CCCGTCGTTTTCGTCACCAT 60.947 55.000 0.00 0.00 44.46 3.55
52 53 1.592131 CCCGTCGTTTTCGTCACCA 60.592 57.895 0.00 0.00 44.46 4.17
53 54 1.280206 CTCCCGTCGTTTTCGTCACC 61.280 60.000 0.00 0.00 44.46 4.02
54 55 1.883725 GCTCCCGTCGTTTTCGTCAC 61.884 60.000 0.00 0.00 44.46 3.67
55 56 1.662446 GCTCCCGTCGTTTTCGTCA 60.662 57.895 0.00 0.00 44.46 4.35
56 57 1.372623 AGCTCCCGTCGTTTTCGTC 60.373 57.895 0.00 0.00 44.46 4.20
57 58 1.663702 CAGCTCCCGTCGTTTTCGT 60.664 57.895 0.00 0.00 44.46 3.85
58 59 3.011760 GCAGCTCCCGTCGTTTTCG 62.012 63.158 0.00 0.00 45.64 3.46
59 60 1.503818 TTGCAGCTCCCGTCGTTTTC 61.504 55.000 0.00 0.00 0.00 2.29
60 61 1.525077 TTGCAGCTCCCGTCGTTTT 60.525 52.632 0.00 0.00 0.00 2.43
61 62 2.110213 TTGCAGCTCCCGTCGTTT 59.890 55.556 0.00 0.00 0.00 3.60
62 63 2.665185 GTTGCAGCTCCCGTCGTT 60.665 61.111 0.00 0.00 0.00 3.85
63 64 3.454587 TTGTTGCAGCTCCCGTCGT 62.455 57.895 1.17 0.00 0.00 4.34
64 65 2.664851 TTGTTGCAGCTCCCGTCG 60.665 61.111 1.17 0.00 0.00 5.12
65 66 1.569479 GAGTTGTTGCAGCTCCCGTC 61.569 60.000 1.17 0.00 36.05 4.79
66 67 1.598130 GAGTTGTTGCAGCTCCCGT 60.598 57.895 1.17 0.00 36.05 5.28
67 68 1.302033 AGAGTTGTTGCAGCTCCCG 60.302 57.895 1.17 0.00 41.53 5.14
68 69 0.250467 TCAGAGTTGTTGCAGCTCCC 60.250 55.000 1.17 0.00 41.53 4.30
69 70 1.467734 CATCAGAGTTGTTGCAGCTCC 59.532 52.381 1.17 0.00 41.53 4.70
70 71 2.159234 GTCATCAGAGTTGTTGCAGCTC 59.841 50.000 1.17 5.09 41.04 4.09
71 72 2.149578 GTCATCAGAGTTGTTGCAGCT 58.850 47.619 1.17 0.00 0.00 4.24
72 73 1.136141 CGTCATCAGAGTTGTTGCAGC 60.136 52.381 0.00 0.00 0.00 5.25
73 74 2.407090 TCGTCATCAGAGTTGTTGCAG 58.593 47.619 0.00 0.00 0.00 4.41
74 75 2.524569 TCGTCATCAGAGTTGTTGCA 57.475 45.000 0.00 0.00 0.00 4.08
75 76 3.878086 TTTCGTCATCAGAGTTGTTGC 57.122 42.857 0.00 0.00 0.00 4.17
76 77 4.026062 TCGTTTTCGTCATCAGAGTTGTTG 60.026 41.667 0.00 0.00 44.46 3.33
77 78 4.025979 GTCGTTTTCGTCATCAGAGTTGTT 60.026 41.667 0.00 0.00 44.46 2.83
78 79 3.489785 GTCGTTTTCGTCATCAGAGTTGT 59.510 43.478 0.00 0.00 44.46 3.32
79 80 3.420544 CGTCGTTTTCGTCATCAGAGTTG 60.421 47.826 0.00 0.00 44.46 3.16
80 81 2.724690 CGTCGTTTTCGTCATCAGAGTT 59.275 45.455 0.00 0.00 44.46 3.01
81 82 2.316792 CGTCGTTTTCGTCATCAGAGT 58.683 47.619 0.00 0.00 44.46 3.24
82 83 1.649171 CCGTCGTTTTCGTCATCAGAG 59.351 52.381 0.00 0.00 44.46 3.35
83 84 1.667756 CCCGTCGTTTTCGTCATCAGA 60.668 52.381 0.00 0.00 44.46 3.27
84 85 0.713883 CCCGTCGTTTTCGTCATCAG 59.286 55.000 0.00 0.00 44.46 2.90
85 86 0.314618 TCCCGTCGTTTTCGTCATCA 59.685 50.000 0.00 0.00 44.46 3.07
86 87 0.989890 CTCCCGTCGTTTTCGTCATC 59.010 55.000 0.00 0.00 44.46 2.92
87 88 1.012486 GCTCCCGTCGTTTTCGTCAT 61.012 55.000 0.00 0.00 44.46 3.06
88 89 1.662446 GCTCCCGTCGTTTTCGTCA 60.662 57.895 0.00 0.00 44.46 4.35
89 90 1.372623 AGCTCCCGTCGTTTTCGTC 60.373 57.895 0.00 0.00 44.46 4.20
90 91 1.663702 CAGCTCCCGTCGTTTTCGT 60.664 57.895 0.00 0.00 44.46 3.85
91 92 3.011760 GCAGCTCCCGTCGTTTTCG 62.012 63.158 0.00 0.00 45.64 3.46
92 93 0.389426 TAGCAGCTCCCGTCGTTTTC 60.389 55.000 0.00 0.00 0.00 2.29
93 94 0.669625 GTAGCAGCTCCCGTCGTTTT 60.670 55.000 0.00 0.00 0.00 2.43
94 95 1.080025 GTAGCAGCTCCCGTCGTTT 60.080 57.895 0.00 0.00 0.00 3.60
95 96 1.812686 TTGTAGCAGCTCCCGTCGTT 61.813 55.000 0.00 0.00 0.00 3.85
96 97 1.605058 ATTGTAGCAGCTCCCGTCGT 61.605 55.000 0.00 0.00 0.00 4.34
97 98 0.460284 AATTGTAGCAGCTCCCGTCG 60.460 55.000 0.00 0.00 0.00 5.12
98 99 1.291132 GAATTGTAGCAGCTCCCGTC 58.709 55.000 0.00 0.00 0.00 4.79
99 100 0.107654 GGAATTGTAGCAGCTCCCGT 60.108 55.000 0.00 0.00 0.00 5.28
100 101 0.107703 TGGAATTGTAGCAGCTCCCG 60.108 55.000 0.00 0.00 0.00 5.14
101 102 1.745653 GTTGGAATTGTAGCAGCTCCC 59.254 52.381 0.00 0.00 0.00 4.30
102 103 1.398390 CGTTGGAATTGTAGCAGCTCC 59.602 52.381 0.00 0.00 0.00 4.70
103 104 2.346803 TCGTTGGAATTGTAGCAGCTC 58.653 47.619 0.00 0.00 0.00 4.09
104 105 2.472695 TCGTTGGAATTGTAGCAGCT 57.527 45.000 0.00 0.00 0.00 4.24
105 106 2.223340 CCATCGTTGGAATTGTAGCAGC 60.223 50.000 6.68 0.00 46.92 5.25
106 107 2.223340 GCCATCGTTGGAATTGTAGCAG 60.223 50.000 16.83 0.00 46.92 4.24
107 108 1.742831 GCCATCGTTGGAATTGTAGCA 59.257 47.619 16.83 0.00 46.92 3.49
108 109 1.742831 TGCCATCGTTGGAATTGTAGC 59.257 47.619 16.83 0.00 46.92 3.58
109 110 3.731867 GCTTGCCATCGTTGGAATTGTAG 60.732 47.826 16.83 1.27 46.92 2.74
110 111 2.163412 GCTTGCCATCGTTGGAATTGTA 59.837 45.455 16.83 0.00 46.92 2.41
111 112 1.067635 GCTTGCCATCGTTGGAATTGT 60.068 47.619 16.83 0.00 46.92 2.71
112 113 1.632422 GCTTGCCATCGTTGGAATTG 58.368 50.000 16.83 3.48 46.92 2.32
113 114 0.532115 GGCTTGCCATCGTTGGAATT 59.468 50.000 16.83 0.00 46.92 2.17
114 115 1.656818 CGGCTTGCCATCGTTGGAAT 61.657 55.000 16.83 0.00 46.92 3.01
115 116 2.331893 CGGCTTGCCATCGTTGGAA 61.332 57.895 16.83 2.29 46.92 3.53
116 117 2.745884 CGGCTTGCCATCGTTGGA 60.746 61.111 16.83 0.00 46.92 3.53
117 118 2.745884 TCGGCTTGCCATCGTTGG 60.746 61.111 12.45 8.23 46.66 3.77
118 119 1.091771 ATCTCGGCTTGCCATCGTTG 61.092 55.000 12.45 0.00 0.00 4.10
119 120 0.392998 AATCTCGGCTTGCCATCGTT 60.393 50.000 12.45 0.00 0.00 3.85
120 121 0.464036 TAATCTCGGCTTGCCATCGT 59.536 50.000 12.45 0.00 0.00 3.73
121 122 1.462283 CATAATCTCGGCTTGCCATCG 59.538 52.381 12.45 0.00 0.00 3.84
122 123 1.808945 CCATAATCTCGGCTTGCCATC 59.191 52.381 12.45 0.00 0.00 3.51
123 124 1.546323 CCCATAATCTCGGCTTGCCAT 60.546 52.381 12.45 0.00 0.00 4.40
124 125 0.179020 CCCATAATCTCGGCTTGCCA 60.179 55.000 12.45 0.00 0.00 4.92
125 126 0.890996 CCCCATAATCTCGGCTTGCC 60.891 60.000 0.75 0.75 0.00 4.52
126 127 0.108585 TCCCCATAATCTCGGCTTGC 59.891 55.000 0.00 0.00 0.00 4.01
127 128 2.867109 ATCCCCATAATCTCGGCTTG 57.133 50.000 0.00 0.00 0.00 4.01
128 129 4.289672 ACAATATCCCCATAATCTCGGCTT 59.710 41.667 0.00 0.00 0.00 4.35
129 130 3.846588 ACAATATCCCCATAATCTCGGCT 59.153 43.478 0.00 0.00 0.00 5.52
130 131 4.222124 ACAATATCCCCATAATCTCGGC 57.778 45.455 0.00 0.00 0.00 5.54
144 145 9.533253 CAGGACAAAATTATTCCCAACAATATC 57.467 33.333 0.00 0.00 0.00 1.63
146 147 7.676043 TCCAGGACAAAATTATTCCCAACAATA 59.324 33.333 0.00 0.00 0.00 1.90
284 286 2.610859 ACGGCCACCTCCTGGAAT 60.611 61.111 2.24 0.00 43.95 3.01
285 287 3.636231 CACGGCCACCTCCTGGAA 61.636 66.667 2.24 0.00 43.95 3.53
298 300 4.589700 GCACACACACACGCACGG 62.590 66.667 0.00 0.00 0.00 4.94
315 317 1.004745 AGGCCACTAACCTGAACCATG 59.995 52.381 5.01 0.00 35.72 3.66
316 318 1.282157 GAGGCCACTAACCTGAACCAT 59.718 52.381 5.01 0.00 37.77 3.55
322 330 2.584608 CCGGAGGCCACTAACCTG 59.415 66.667 5.01 0.00 46.14 4.00
342 350 0.731514 TAAGTAGCAGACGCACGCAC 60.732 55.000 0.00 0.00 42.27 5.34
467 476 0.396417 AGATGGAGAGGAGGACACCG 60.396 60.000 0.00 0.00 34.73 4.94
500 509 1.873125 CTCTTGCTCGCTCGCTCAG 60.873 63.158 0.00 0.00 0.00 3.35
501 510 2.180267 CTCTTGCTCGCTCGCTCA 59.820 61.111 0.00 0.00 0.00 4.26
504 513 4.135153 TCCCTCTTGCTCGCTCGC 62.135 66.667 0.00 0.00 0.00 5.03
514 523 3.684628 TCGCCCTCCCTCCCTCTT 61.685 66.667 0.00 0.00 0.00 2.85
569 578 1.860950 CGTCAGCCATCTTAATCCGTG 59.139 52.381 0.00 0.00 0.00 4.94
570 579 1.754803 TCGTCAGCCATCTTAATCCGT 59.245 47.619 0.00 0.00 0.00 4.69
571 580 2.223829 ACTCGTCAGCCATCTTAATCCG 60.224 50.000 0.00 0.00 0.00 4.18
572 581 3.460857 ACTCGTCAGCCATCTTAATCC 57.539 47.619 0.00 0.00 0.00 3.01
573 582 3.804873 GGAACTCGTCAGCCATCTTAATC 59.195 47.826 0.00 0.00 0.00 1.75
585 594 1.863662 GAGGCGTCTGGAACTCGTCA 61.864 60.000 0.00 0.00 29.93 4.35
591 600 0.034896 TTTGGAGAGGCGTCTGGAAC 59.965 55.000 14.78 0.00 30.97 3.62
622 653 7.801547 ATTCATCTAAACTTTGTCAAATGCG 57.198 32.000 0.00 0.00 0.00 4.73
641 672 1.755959 TGCGCCTTGCCAAATATTCAT 59.244 42.857 4.18 0.00 45.60 2.57
688 749 1.522668 CAGCTGTCCATTCCACGAAA 58.477 50.000 5.25 0.00 0.00 3.46
689 750 0.321564 CCAGCTGTCCATTCCACGAA 60.322 55.000 13.81 0.00 0.00 3.85
694 755 2.440980 GGCCCAGCTGTCCATTCC 60.441 66.667 13.81 0.40 0.00 3.01
699 760 2.072487 TCTATGGGCCCAGCTGTCC 61.072 63.158 31.97 13.03 0.00 4.02
707 768 0.398318 GATGGTCTGTCTATGGGCCC 59.602 60.000 17.59 17.59 0.00 5.80
750 811 2.203139 CACCTCCCAACGTGTGCA 60.203 61.111 0.00 0.00 0.00 4.57
755 816 3.246880 GGTCCCACCTCCCAACGT 61.247 66.667 0.00 0.00 34.73 3.99
1066 1146 2.204090 ACGTTGATGGGAGGGGGT 60.204 61.111 0.00 0.00 0.00 4.95
1103 1189 0.592637 CAGCGATTCCAGCACACAAA 59.407 50.000 0.00 0.00 37.01 2.83
1109 1195 0.812811 GATGCTCAGCGATTCCAGCA 60.813 55.000 1.53 1.53 45.65 4.41
1231 1331 2.098607 TGCGTATCTTCTTGTACCTCCG 59.901 50.000 0.00 0.00 0.00 4.63
1331 1431 0.694444 GATTAGGGAGAGGGGTGCCA 60.694 60.000 0.00 0.00 0.00 4.92
1347 1447 3.766591 ACGAGAATGACAGAGACCAGATT 59.233 43.478 0.00 0.00 0.00 2.40
1348 1448 3.360867 ACGAGAATGACAGAGACCAGAT 58.639 45.455 0.00 0.00 0.00 2.90
1349 1449 2.750166 GACGAGAATGACAGAGACCAGA 59.250 50.000 0.00 0.00 0.00 3.86
1350 1450 2.752354 AGACGAGAATGACAGAGACCAG 59.248 50.000 0.00 0.00 0.00 4.00
1353 1453 4.658071 GAAGAGACGAGAATGACAGAGAC 58.342 47.826 0.00 0.00 0.00 3.36
1354 1454 3.372514 CGAAGAGACGAGAATGACAGAGA 59.627 47.826 0.00 0.00 35.09 3.10
1355 1455 3.486708 CCGAAGAGACGAGAATGACAGAG 60.487 52.174 0.00 0.00 35.09 3.35
1356 1456 2.420372 CCGAAGAGACGAGAATGACAGA 59.580 50.000 0.00 0.00 35.09 3.41
1357 1457 2.478709 CCCGAAGAGACGAGAATGACAG 60.479 54.545 0.00 0.00 35.09 3.51
1358 1458 1.472878 CCCGAAGAGACGAGAATGACA 59.527 52.381 0.00 0.00 35.09 3.58
1509 5252 1.257743 GGACAAAAGAGAAAGGGGGC 58.742 55.000 0.00 0.00 0.00 5.80
1519 5268 0.105913 AAAAGGGCGGGGACAAAAGA 60.106 50.000 0.00 0.00 0.00 2.52
1520 5269 0.756294 AAAAAGGGCGGGGACAAAAG 59.244 50.000 0.00 0.00 0.00 2.27
1546 5298 1.333619 TGCAGCGGAGAAACAAACTTC 59.666 47.619 0.00 0.00 0.00 3.01
1601 5353 4.288398 TCCCCGTACCATGTAACATAGAA 58.712 43.478 0.00 0.00 0.00 2.10
1630 5385 0.596082 AGAAAATGCCGTTTCCCGTG 59.404 50.000 5.77 0.00 38.10 4.94
1666 5421 5.183969 TCTACGCATATACTCGCCTTATCT 58.816 41.667 0.00 0.00 0.00 1.98
1704 5459 5.392767 TTGTTTGTAAAGCACCACTGAAA 57.607 34.783 0.00 0.00 36.54 2.69
1840 5613 1.281577 TGTGCATAGATGAAGGTGCCA 59.718 47.619 0.00 0.00 36.79 4.92
1841 5614 1.672881 GTGTGCATAGATGAAGGTGCC 59.327 52.381 0.00 0.00 36.79 5.01
1980 5769 7.454225 AGCACTCTAAGAAATAGTTTGGTTCT 58.546 34.615 0.00 0.00 33.01 3.01
1999 5788 6.564873 GCATCGTCCTTTTATTCATAGCACTC 60.565 42.308 0.00 0.00 0.00 3.51
2004 5793 5.334414 GCCAGCATCGTCCTTTTATTCATAG 60.334 44.000 0.00 0.00 0.00 2.23
2039 5860 4.459330 AGGAGGATTTAGCATTGAGAAGC 58.541 43.478 0.00 0.00 0.00 3.86
2040 5861 7.121759 TGAAAAGGAGGATTTAGCATTGAGAAG 59.878 37.037 0.00 0.00 0.00 2.85
2041 5862 6.947733 TGAAAAGGAGGATTTAGCATTGAGAA 59.052 34.615 0.00 0.00 0.00 2.87
2042 5863 6.484288 TGAAAAGGAGGATTTAGCATTGAGA 58.516 36.000 0.00 0.00 0.00 3.27
2043 5864 6.764308 TGAAAAGGAGGATTTAGCATTGAG 57.236 37.500 0.00 0.00 0.00 3.02
2108 5929 0.802494 GGGAACTTATGGTGTGCACG 59.198 55.000 13.13 0.00 0.00 5.34
2213 6126 4.881850 ACACGAGGAAAGTGAAGAAACATT 59.118 37.500 3.20 0.00 41.83 2.71
2214 6127 4.451900 ACACGAGGAAAGTGAAGAAACAT 58.548 39.130 3.20 0.00 41.83 2.71
2594 6520 3.222603 GAAAGAAAGGAGCACTGGGAAA 58.777 45.455 0.00 0.00 0.00 3.13
2665 6626 6.314648 CCGATGATAAGGACAACATGATATGG 59.685 42.308 0.00 0.00 33.60 2.74
2670 6631 3.709141 TCCCGATGATAAGGACAACATGA 59.291 43.478 0.00 0.00 0.00 3.07
2671 6632 4.071961 TCCCGATGATAAGGACAACATG 57.928 45.455 0.00 0.00 0.00 3.21
2672 6633 4.771114 TTCCCGATGATAAGGACAACAT 57.229 40.909 0.00 0.00 0.00 2.71
2673 6634 4.561500 TTTCCCGATGATAAGGACAACA 57.438 40.909 0.00 0.00 0.00 3.33
2699 6687 6.566197 AGTTAATTCTTGCCTTCACTGAAG 57.434 37.500 11.37 11.37 39.17 3.02
2795 6787 9.753674 ATGGTTCTTTCTAATGAGTGGAATAAA 57.246 29.630 0.00 0.00 0.00 1.40
2851 6843 5.221601 GCAGGTCTCATCATATTGAAGAGGA 60.222 44.000 9.19 0.00 41.19 3.71
2872 6867 3.358707 TTGCAGAGACAACATTTGCAG 57.641 42.857 0.00 0.00 44.52 4.41
2906 6901 3.698539 TGTTCAATGTGTTCAGGAAGCAA 59.301 39.130 0.00 0.00 0.00 3.91
3077 7072 7.396540 AAATATTTTCTGGACTCCATGTGTC 57.603 36.000 0.00 7.36 30.82 3.67
3107 7102 1.401539 GGCTTGAGGATTGAAACGCAC 60.402 52.381 0.00 0.00 0.00 5.34
3262 7257 0.657312 TCGCTGTTTGTTGCTGACAG 59.343 50.000 0.00 0.00 42.75 3.51
3389 7397 6.995091 ACCCTCTTTTGAACATCATAGCTATC 59.005 38.462 2.34 0.00 0.00 2.08
3409 7417 1.153349 GATCCTCAACGGCACCCTC 60.153 63.158 0.00 0.00 0.00 4.30
3503 8908 0.674895 CTGCAGAAGGGGAAGTTCCG 60.675 60.000 15.80 1.95 37.43 4.30
3512 8917 1.815003 GACCACATTTCTGCAGAAGGG 59.185 52.381 27.02 25.71 35.21 3.95
3558 8963 3.005897 CCTCTTACGGGACCACATATCTG 59.994 52.174 0.00 0.00 0.00 2.90
3560 8965 2.288886 GCCTCTTACGGGACCACATATC 60.289 54.545 0.00 0.00 0.00 1.63
3562 8967 1.117150 GCCTCTTACGGGACCACATA 58.883 55.000 0.00 0.00 0.00 2.29
3564 8969 1.534476 TGCCTCTTACGGGACCACA 60.534 57.895 0.00 0.00 0.00 4.17
3565 8970 1.218316 CTGCCTCTTACGGGACCAC 59.782 63.158 0.00 0.00 0.00 4.16
3566 8971 1.987855 CCTGCCTCTTACGGGACCA 60.988 63.158 0.00 0.00 35.38 4.02
3567 8972 2.732619 CCCTGCCTCTTACGGGACC 61.733 68.421 0.00 0.00 39.08 4.46
3568 8973 1.551019 AACCCTGCCTCTTACGGGAC 61.551 60.000 0.00 0.00 39.08 4.46
3571 8976 0.613777 AGAAACCCTGCCTCTTACGG 59.386 55.000 0.00 0.00 0.00 4.02
3572 8977 2.076863 CAAGAAACCCTGCCTCTTACG 58.923 52.381 0.00 0.00 0.00 3.18
3605 9065 7.221450 TGTGCACTTCTACTTTATACCACTTT 58.779 34.615 19.41 0.00 0.00 2.66
3768 11144 7.699812 CAGTGAAGAAAAGAAAGGAAAAGAGTG 59.300 37.037 0.00 0.00 0.00 3.51
3770 11146 7.989826 TCAGTGAAGAAAAGAAAGGAAAAGAG 58.010 34.615 0.00 0.00 0.00 2.85
3771 11147 7.938140 TCAGTGAAGAAAAGAAAGGAAAAGA 57.062 32.000 0.00 0.00 0.00 2.52
3776 11171 6.432162 CCATCATCAGTGAAGAAAAGAAAGGA 59.568 38.462 1.59 0.00 38.01 3.36
4044 11446 3.085952 CCCTGTGGGTTCATGTTACAT 57.914 47.619 0.00 0.00 38.25 2.29
4173 11641 2.396590 TCAAACTATCCGTCAAGGGC 57.603 50.000 0.00 0.00 41.52 5.19
4200 11668 2.170166 CTTGCTTGGGTGGATTGCTTA 58.830 47.619 0.00 0.00 0.00 3.09
4257 11725 6.525578 TCATCTAGTGGTGTACAACTTAGG 57.474 41.667 13.07 0.62 0.00 2.69
4274 11742 8.983789 TGTATACCAATACCACTGTTTCATCTA 58.016 33.333 0.00 0.00 37.72 1.98
4294 11762 5.220854 GCATGTTTCATCTGGTGGTGTATAC 60.221 44.000 0.00 0.00 0.00 1.47
4295 11763 4.881273 GCATGTTTCATCTGGTGGTGTATA 59.119 41.667 0.00 0.00 0.00 1.47
4296 11764 3.696051 GCATGTTTCATCTGGTGGTGTAT 59.304 43.478 0.00 0.00 0.00 2.29
4370 11838 1.339235 CTCCATTTTGCACGCAAGCG 61.339 55.000 13.50 13.50 46.03 4.68
4424 11892 0.179702 ACATGATGCACCATCTCGCT 59.820 50.000 0.00 0.00 41.06 4.93
4550 12025 0.181114 GATGTGGGCTGCCTGACATA 59.819 55.000 26.30 13.84 30.65 2.29
4553 12028 2.821366 CGATGTGGGCTGCCTGAC 60.821 66.667 19.68 15.57 0.00 3.51
4577 12052 0.911769 ACTTGATCCGAAGCCCATCA 59.088 50.000 0.00 0.00 0.00 3.07
4608 12083 3.846588 CAGGGATAGTATGGGGCTGTTAT 59.153 47.826 0.00 0.00 0.00 1.89
4637 12112 0.399949 ACGGCTGGGATATGAAGGGA 60.400 55.000 0.00 0.00 0.00 4.20
4644 12119 3.933861 AAGAGAAAACGGCTGGGATAT 57.066 42.857 0.00 0.00 0.00 1.63
4719 12200 1.731969 GGATACACGCCGATACGCC 60.732 63.158 0.00 0.00 36.19 5.68
4804 12285 0.947960 CAAACACCACACACGGCATA 59.052 50.000 0.00 0.00 0.00 3.14
4881 12362 5.069251 CCTCGGAATGAATACCAGTACTTCT 59.931 44.000 0.00 0.00 0.00 2.85
5099 12581 2.421529 GGGCAGGAATACCGACAATTCT 60.422 50.000 0.00 0.00 41.83 2.40
5105 12587 0.535102 CCATGGGCAGGAATACCGAC 60.535 60.000 2.85 0.00 41.83 4.79
5120 12602 2.414481 GACGAGCTATAGCATTGCCATG 59.586 50.000 26.07 8.79 45.16 3.66
5233 12745 1.108727 ACACACCCTGCACCAATGTG 61.109 55.000 11.97 11.97 44.92 3.21
5295 12807 6.890979 ATTTGGCTCTTCTAATTATGGCTC 57.109 37.500 0.00 0.00 0.00 4.70
5508 13037 5.916883 GGCATGTTGATACACATAAGCATTC 59.083 40.000 0.00 0.00 35.51 2.67
5509 13038 5.595542 AGGCATGTTGATACACATAAGCATT 59.404 36.000 0.00 0.00 35.51 3.56
5557 13104 2.682856 CCAACACTGGTATATGCCACAC 59.317 50.000 8.67 0.00 38.00 3.82
5722 13289 4.936802 ACAGATAAGACCAGTCAGTACCT 58.063 43.478 0.00 0.00 0.00 3.08
6223 13814 5.161943 AGCAGCAGATCATCAATATAGCA 57.838 39.130 0.00 0.00 0.00 3.49
6225 13816 7.764901 ACACATAGCAGCAGATCATCAATATAG 59.235 37.037 0.00 0.00 0.00 1.31
6226 13817 7.618137 ACACATAGCAGCAGATCATCAATATA 58.382 34.615 0.00 0.00 0.00 0.86
6349 14012 4.795970 AAACACAACTAAACTCAGCTCG 57.204 40.909 0.00 0.00 0.00 5.03
6387 14050 4.040755 ACACTCCTATTGGCAGGAATACT 58.959 43.478 0.00 0.00 44.18 2.12
6409 14072 5.179368 CGAAGTTTTCCTTGATGAGCTACAA 59.821 40.000 0.00 0.00 32.03 2.41
6432 14095 5.036737 ACAAGAAATGTTTGCAGAAAGACG 58.963 37.500 0.00 0.00 40.06 4.18
6505 14168 9.643693 AAATAGAAATAACTTTGAATGCAGTGG 57.356 29.630 0.00 0.00 0.00 4.00
6518 14181 9.826574 TGCTAACGTATCCAAATAGAAATAACT 57.173 29.630 0.00 0.00 0.00 2.24
6522 14185 7.226720 CCTGTGCTAACGTATCCAAATAGAAAT 59.773 37.037 0.00 0.00 0.00 2.17
6564 14227 2.615447 ACGAATGATACAAGCTGCATGG 59.385 45.455 9.85 0.00 0.00 3.66
6570 14233 2.932614 GACAGCACGAATGATACAAGCT 59.067 45.455 0.00 0.00 0.00 3.74
6595 14259 7.721286 AATTCGACTCTTCTAATTATGCCTG 57.279 36.000 0.00 0.00 28.00 4.85
6658 14322 3.009723 ACTTGCCGAGACATAACATTGG 58.990 45.455 0.00 0.00 0.00 3.16
6776 14443 4.379813 GCATTCGAACTCATGGTTGTCAAT 60.380 41.667 0.00 0.00 38.41 2.57
6853 14520 9.549078 TGACCATACTAATTAAACGATATTGCA 57.451 29.630 0.00 0.00 0.00 4.08
6982 14649 4.919774 TGCATACTAACCCTTCTTTGGA 57.080 40.909 0.00 0.00 0.00 3.53
7127 14794 3.381908 TGAAGACTAGCTAGCAGGTTAGC 59.618 47.826 20.91 7.01 45.05 3.09
7163 14830 0.100682 CCGAGATCTACCACCACGTG 59.899 60.000 9.08 9.08 0.00 4.49
7217 14884 2.355108 GCCTGGAGCTCACAAGATACAA 60.355 50.000 17.19 0.00 29.42 2.41
7662 15331 5.391950 GCCGTGTGATGACAACATTAAGAAT 60.392 40.000 0.00 0.00 36.82 2.40
7937 15610 0.552848 CCCACTGTGCCAGGGATAAT 59.447 55.000 1.29 0.00 45.80 1.28
7996 15669 1.672356 CCCCCACTGAAGCTCAACG 60.672 63.158 0.00 0.00 0.00 4.10
8053 15726 2.356667 CAGGAGGTTTGGGAGCCC 59.643 66.667 0.00 0.00 0.00 5.19
8092 15766 8.367911 ACACCCATGTATATATAACTGACACAG 58.632 37.037 0.00 0.00 37.26 3.66
8114 15788 3.124921 CGGGGCATCAACGACACC 61.125 66.667 0.00 0.00 0.00 4.16
8147 15825 6.208599 CACCAACAAACCAACCAAGTATAGAT 59.791 38.462 0.00 0.00 0.00 1.98
8212 15892 2.159114 AGTTTCGGCAGCAACATTTTGT 60.159 40.909 2.09 0.00 34.90 2.83
8225 15905 3.412386 AGGGATATAATGCAGTTTCGGC 58.588 45.455 0.00 0.00 0.00 5.54
8258 15938 4.881850 CCCTAACCTATTGACATCAACACC 59.118 45.833 0.00 0.00 38.86 4.16
8268 15948 8.978472 CGATATTAATCCTCCCTAACCTATTGA 58.022 37.037 0.00 0.00 0.00 2.57
8318 15998 4.705337 AAGATAGTCACCGAGAGACAAC 57.295 45.455 0.00 0.00 38.46 3.32
8381 16061 5.796350 AACCTTTGAATCTTCGGATAACG 57.204 39.130 0.00 0.00 46.11 3.18
8482 16163 3.493503 GTGGCGAGGTTAAGTGTATATGC 59.506 47.826 0.00 0.00 0.00 3.14
8516 16197 5.853572 TCCTAGGGTTTTACCTCAATGTT 57.146 39.130 9.46 0.00 42.09 2.71
8563 16244 0.618680 CCCATGACTCCAGGACCTGA 60.619 60.000 23.77 8.16 32.44 3.86
8565 16246 0.618968 GTCCCATGACTCCAGGACCT 60.619 60.000 5.51 0.00 42.49 3.85
8584 16265 2.614259 ACATATGACTCTAGGGGGCAG 58.386 52.381 10.38 0.00 0.00 4.85
8656 16338 0.844661 AACATAGTGGGCAGGGGACA 60.845 55.000 0.00 0.00 0.00 4.02
8669 16351 4.497006 GCATGCAGAAGGTTAGCAACATAG 60.497 45.833 14.21 0.00 42.15 2.23
8671 16353 2.165030 GCATGCAGAAGGTTAGCAACAT 59.835 45.455 14.21 0.00 42.15 2.71
8749 16431 1.345715 CCCAAGGATCGGGGCTAACT 61.346 60.000 3.12 0.00 40.35 2.24
8780 16462 0.469917 CACATCCCGCAATAGGACCT 59.530 55.000 0.00 0.00 35.85 3.85
8781 16463 0.535102 CCACATCCCGCAATAGGACC 60.535 60.000 0.00 0.00 35.85 4.46
8793 16476 3.017581 AGGCAGACCCCCACATCC 61.018 66.667 0.00 0.00 36.11 3.51
8811 16494 2.352032 GGGGACTCGGACTCACCTG 61.352 68.421 0.00 0.00 36.31 4.00
8832 16515 2.104963 CAGGGTCCCAGGACTTAATAGC 59.895 54.545 16.18 0.00 44.04 2.97
8859 16542 1.133513 ACCAGACCATTGCCTCACAAA 60.134 47.619 0.00 0.00 42.86 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.